Query 023343
Match_columns 283
No_of_seqs 134 out of 1507
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08588 succinyl-diaminopimel 100.0 8.9E-39 1.9E-43 285.0 24.5 249 2-282 113-364 (377)
2 TIGR01910 DapE-ArgE acetylorni 100.0 7.9E-39 1.7E-43 285.1 21.9 252 2-282 118-372 (375)
3 PRK13013 succinyl-diaminopimel 100.0 4.2E-38 9.1E-43 285.1 25.5 260 2-282 136-410 (427)
4 PRK06915 acetylornithine deace 100.0 9E-38 1.9E-42 282.4 24.0 257 2-282 147-406 (422)
5 PRK13009 succinyl-diaminopimel 100.0 7.2E-37 1.6E-41 272.6 24.5 244 2-282 112-362 (375)
6 TIGR01246 dapE_proteo succinyl 100.0 1.2E-36 2.6E-41 270.7 24.0 244 2-282 109-359 (370)
7 PRK08651 succinyl-diaminopimel 100.0 1.2E-36 2.6E-41 272.9 23.8 249 2-282 127-379 (394)
8 PRK13983 diaminopimelate amino 100.0 2.2E-36 4.7E-41 271.7 24.9 251 2-282 130-389 (400)
9 PRK08652 acetylornithine deace 100.0 1.8E-36 4E-41 267.3 23.0 226 11-282 107-333 (347)
10 TIGR01892 AcOrn-deacetyl acety 100.0 1.9E-36 4E-41 268.9 22.6 245 2-282 111-356 (364)
11 PRK07522 acetylornithine deace 100.0 5.7E-36 1.2E-40 267.7 22.6 254 2-282 117-372 (385)
12 PRK06837 acetylornithine deace 100.0 6.8E-36 1.5E-40 270.2 23.2 255 2-282 151-410 (427)
13 PRK00466 acetyl-lysine deacety 100.0 8.9E-36 1.9E-40 262.7 22.4 218 13-282 112-331 (346)
14 TIGR03526 selenium_YgeY putati 100.0 9.4E-36 2E-40 266.9 22.4 246 2-282 121-382 (395)
15 TIGR03320 ygeY M20/DapE family 100.0 1.1E-35 2.4E-40 266.5 22.5 246 2-282 121-382 (395)
16 PRK08596 acetylornithine deace 100.0 2.1E-35 4.5E-40 266.6 24.0 255 2-282 131-404 (421)
17 TIGR01900 dapE-gram_pos succin 100.0 4.8E-35 1E-39 260.1 24.5 246 8-275 124-373 (373)
18 PRK08737 acetylornithine deace 100.0 6.7E-35 1.4E-39 258.0 24.1 235 11-282 117-353 (364)
19 PRK07338 hypothetical protein; 100.0 2.3E-35 5.1E-40 265.1 21.4 239 2-282 142-386 (402)
20 PRK13004 peptidase; Reviewed 100.0 4E-35 8.7E-40 263.2 22.3 247 2-282 123-384 (399)
21 PRK08201 hypothetical protein; 100.0 5.8E-35 1.3E-39 266.4 23.7 256 2-282 133-442 (456)
22 PRK04443 acetyl-lysine deacety 100.0 3.9E-35 8.4E-40 258.7 21.7 229 8-282 107-337 (348)
23 TIGR01880 Ac-peptdase-euk N-ac 100.0 2.9E-35 6.3E-40 264.3 20.4 253 2-282 125-386 (400)
24 PRK05111 acetylornithine deace 100.0 2E-34 4.2E-39 257.6 23.4 244 2-282 124-369 (383)
25 PRK06133 glutamate carboxypept 100.0 1.6E-34 3.5E-39 259.9 22.3 239 2-282 149-395 (410)
26 PRK13007 succinyl-diaminopimel 100.0 4.9E-34 1.1E-38 252.3 22.6 232 10-282 112-343 (352)
27 TIGR01883 PepT-like peptidase 100.0 2.9E-34 6.3E-39 254.6 21.0 236 2-282 113-352 (361)
28 PRK07473 carboxypeptidase; Pro 100.0 2E-33 4.4E-38 249.8 21.3 234 2-282 125-364 (376)
29 PRK09104 hypothetical protein; 100.0 5.7E-33 1.2E-37 253.7 24.2 256 2-282 141-450 (464)
30 TIGR01902 dapE-lys-deAc N-acet 100.0 3E-33 6.4E-38 245.7 21.1 221 11-282 100-322 (336)
31 PRK07906 hypothetical protein; 100.0 2.9E-33 6.4E-38 253.2 21.5 248 2-282 118-415 (426)
32 PRK06446 hypothetical protein; 100.0 2.6E-33 5.7E-38 253.9 20.9 250 3-282 117-422 (436)
33 PRK12892 allantoate amidohydro 100.0 5.1E-33 1.1E-37 250.8 21.1 242 2-282 106-398 (412)
34 TIGR01879 hydantase amidase, h 100.0 5.3E-33 1.1E-37 249.5 20.4 244 1-282 98-390 (401)
35 PRK09133 hypothetical protein; 100.0 4.7E-33 1E-37 254.8 19.5 248 2-282 154-457 (472)
36 PRK09290 allantoate amidohydro 100.0 1E-32 2.3E-37 248.6 21.0 242 2-282 105-398 (413)
37 PRK12893 allantoate amidohydro 100.0 6.8E-33 1.5E-37 249.9 19.5 243 2-282 108-397 (412)
38 PRK07907 hypothetical protein; 100.0 4.3E-32 9.4E-37 247.0 24.4 251 8-282 140-435 (449)
39 PRK12891 allantoate amidohydro 100.0 1.5E-32 3.2E-37 247.5 19.5 241 1-282 107-397 (414)
40 PLN02280 IAA-amino acid hydrol 100.0 3.7E-32 8E-37 246.9 22.2 242 2-282 199-462 (478)
41 COG0624 ArgE Acetylornithine d 100.0 4.9E-32 1.1E-36 244.1 22.9 248 2-282 129-395 (409)
42 PRK12890 allantoate amidohydro 100.0 3.5E-32 7.6E-37 245.3 21.3 246 2-282 106-399 (414)
43 TIGR01886 dipeptidase dipeptid 100.0 7.6E-32 1.6E-36 245.8 22.2 243 1-282 129-453 (466)
44 PRK07079 hypothetical protein; 100.0 1.4E-31 3E-36 244.8 23.4 253 2-282 140-443 (469)
45 PRK08262 hypothetical protein; 100.0 5.8E-32 1.3E-36 248.4 19.2 252 2-282 167-472 (486)
46 PRK13381 peptidase T; Provisio 100.0 1.8E-31 3.8E-36 240.0 20.4 235 2-282 151-391 (404)
47 TIGR03176 AllC allantoate amid 100.0 5.1E-30 1.1E-34 229.9 19.6 244 1-282 100-391 (406)
48 PRK05469 peptidase T; Provisio 100.0 5.9E-30 1.3E-34 230.4 19.0 236 2-282 153-393 (408)
49 TIGR01882 peptidase-T peptidas 100.0 9.6E-31 2.1E-35 235.3 13.9 236 2-282 155-395 (410)
50 PRK07318 dipeptidase PepV; Rev 100.0 7.5E-30 1.6E-34 233.1 18.0 245 2-282 131-453 (466)
51 PLN02693 IAA-amino acid hydrol 100.0 6.7E-29 1.4E-33 224.1 23.3 241 2-281 149-408 (437)
52 TIGR01891 amidohydrolases amid 100.0 2.7E-28 5.8E-33 216.5 21.8 236 3-278 104-358 (363)
53 COG1473 AbgB Metal-dependent a 100.0 4.5E-28 9.7E-33 212.8 22.6 240 2-279 116-374 (392)
54 TIGR01893 aa-his-dipept aminoa 100.0 6.2E-28 1.3E-32 221.1 21.8 242 11-282 127-465 (477)
55 PRK07205 hypothetical protein; 100.0 1.8E-27 3.9E-32 216.4 22.1 241 2-282 129-430 (444)
56 PRK06156 hypothetical protein; 100.0 1.2E-27 2.5E-32 220.9 21.1 246 2-282 167-503 (520)
57 PRK13590 putative bifunctional 100.0 7E-28 1.5E-32 224.8 19.0 243 1-282 282-575 (591)
58 PRK15026 aminoacyl-histidine d 100.0 1.5E-27 3.3E-32 217.3 20.5 250 2-281 125-470 (485)
59 PRK08554 peptidase; Reviewed 100.0 2.1E-27 4.5E-32 214.8 20.5 244 2-282 116-425 (438)
60 KOG2275 Aminoacylase ACY1 and 100.0 6.4E-28 1.4E-32 206.2 15.5 253 1-282 141-406 (420)
61 PRK13799 unknown domain/N-carb 100.0 3.1E-27 6.6E-32 220.3 20.6 245 1-282 282-577 (591)
62 TIGR01887 dipeptidaselike dipe 100.0 3.6E-27 7.7E-32 213.6 20.3 241 2-282 119-439 (447)
63 KOG2276 Metalloexopeptidases [ 99.9 5E-24 1.1E-28 180.9 20.1 260 1-282 144-459 (473)
64 COG2195 PepD Di- and tripeptid 99.8 4.4E-20 9.6E-25 162.5 11.2 234 9-282 165-400 (414)
65 PF07687 M20_dimer: Peptidase 99.8 1.6E-18 3.5E-23 127.7 7.7 109 62-175 1-109 (111)
66 PF01546 Peptidase_M20: Peptid 99.4 5.3E-13 1.1E-17 107.5 5.9 65 216-282 111-179 (189)
67 COG4187 RocB Arginine degradat 98.6 1.9E-07 4.1E-12 81.5 7.6 153 9-172 159-324 (553)
68 PRK09961 exoaminopeptidase; Pr 97.4 0.00027 5.9E-09 62.2 5.0 65 215-282 254-322 (344)
69 TIGR03107 glu_aminopep glutamy 96.7 0.0021 4.6E-08 56.6 4.8 65 215-282 263-330 (350)
70 PF05343 Peptidase_M42: M42 gl 94.0 0.043 9.4E-07 47.2 2.9 65 215-282 221-289 (292)
71 COG1363 FrvX Cellulase M and r 93.7 0.12 2.6E-06 45.5 5.0 64 216-282 268-335 (355)
72 PF04389 Peptidase_M28: Peptid 93.3 0.027 5.9E-07 44.6 0.3 51 2-55 39-89 (179)
73 PRK09864 putative peptidase; P 92.4 0.25 5.5E-06 43.7 5.2 65 215-282 262-330 (356)
74 TIGR03106 trio_M42_hydro hydro 91.3 0.39 8.4E-06 42.4 5.1 64 215-282 264-331 (343)
75 PF05343 Peptidase_M42: M42 gl 90.8 0.16 3.5E-06 43.7 2.2 38 10-55 153-190 (292)
76 TIGR03107 glu_aminopep glutamy 90.8 0.25 5.5E-06 43.7 3.4 40 10-57 197-236 (350)
77 PRK09864 putative peptidase; P 90.7 0.21 4.5E-06 44.2 2.9 46 3-57 186-231 (356)
78 COG1363 FrvX Cellulase M and r 90.2 0.23 5.1E-06 43.7 2.7 42 8-57 197-238 (355)
79 PRK10199 alkaline phosphatase 88.9 0.3 6.5E-06 42.9 2.4 34 2-40 156-189 (346)
80 PRK09961 exoaminopeptidase; Pr 88.6 0.48 1E-05 41.9 3.5 40 10-57 185-224 (344)
81 PRK02256 putative aminopeptida 84.4 1.2 2.7E-05 40.8 3.9 65 215-282 380-451 (462)
82 TIGR03106 trio_M42_hydro hydro 80.7 0.86 1.9E-05 40.2 1.4 26 2-27 196-221 (343)
83 PRK02813 putative aminopeptida 76.0 3.5 7.6E-05 37.6 3.9 65 216-282 347-417 (428)
84 PTZ00371 aspartyl aminopeptida 74.7 4.2 9.2E-05 37.5 4.1 66 215-282 373-444 (465)
85 COG2234 Iap Predicted aminopep 59.0 7.8 0.00017 35.3 2.6 35 2-41 241-275 (435)
86 KOG2195 Transferrin receptor a 55.9 7.4 0.00016 37.7 1.9 35 3-40 387-421 (702)
87 KOG2194 Aminopeptidases of the 50.1 9 0.0002 37.6 1.5 49 2-55 176-225 (834)
88 COG1362 LAP4 Aspartyl aminopep 48.9 36 0.00077 30.8 4.9 64 216-281 355-424 (437)
89 PRK15026 aminoacyl-histidine d 46.6 31 0.00067 32.1 4.4 33 140-172 353-385 (485)
90 COG3150 Predicted esterase [Ge 35.7 73 0.0016 25.2 4.2 61 218-279 44-123 (191)
91 PHA02448 hypothetical protein 32.9 2.1E+02 0.0045 21.3 6.1 72 8-94 22-100 (192)
92 PRK02813 putative aminopeptida 31.2 33 0.00072 31.4 2.0 24 12-35 252-275 (428)
93 cd06411 PB1_p51 The PB1 domain 28.3 1.9E+02 0.0042 19.5 5.7 30 144-173 4-33 (78)
94 PRK05943 50S ribosomal protein 26.2 69 0.0015 22.3 2.5 20 244-263 15-35 (94)
95 PF02127 Peptidase_M18: Aminop 23.7 1.3E+02 0.0028 27.6 4.4 63 216-281 354-423 (432)
96 PF05268 GP38: Phage tail fibr 23.4 1E+02 0.0022 25.3 3.2 46 221-276 61-106 (260)
97 cd06406 PB1_P67 A PB1 domain i 22.1 2.6E+02 0.0057 18.9 6.1 29 144-172 8-36 (80)
98 cd00495 Ribosomal_L25_TL5_CTC 20.5 1E+02 0.0023 21.2 2.5 19 244-262 14-33 (91)
No 1
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=8.9e-39 Score=285.02 Aligned_cols=249 Identities=23% Similarity=0.276 Sum_probs=207.2
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hs 81 (283)
+.|++.+..++++|.|+|++|||.|+ .|+.++++++++++ +|++++.+|+...++++++|..+++|+++|+++|+
T Consensus 113 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~G~~~~~~~~~~~~--~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Hs 187 (377)
T PRK08588 113 IELKEQGQLLNGTIRLLATAGEEVGE---LGAKQLTEKGYADD--LDALIIGEPSGHGIVYAHKGSMDYKVTSTGKAAHS 187 (377)
T ss_pred HHHHHcCCCCCCcEEEEEEcccccCc---hhHHHHHhcCccCC--CCEEEEecCCCceeEEEEEEEEEEEEEEEeechhc
Confidence 45777777889999999999999987 79999999876543 57899999988888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHH
Q 023343 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (283)
Q Consensus 82 s~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~ 161 (283)
|.|+.|.||+..+++++..++++.. .+... ..+....+++++.|+ +|...|+||++|++.+|+|+.|+++.++
T Consensus 188 s~p~~g~nAi~~~~~~l~~l~~~~~-~~~~~-----~~~~~~~t~~v~~i~-gG~~~nvip~~~~~~~d~R~~p~~~~~~ 260 (377)
T PRK08588 188 SMPELGVNAIDPLLEFYNEQKEYFD-SIKKH-----NPYLGGLTHVVTIIN-GGEQVNSVPDEAELEFNIRTIPEYDNDQ 260 (377)
T ss_pred cCCccccCHHHHHHHHHHHHHHHhh-hhccc-----CccCCCCceeeeEEe-CCCcCCcCCCeEEEEEEeccCCCCCHHH
Confidence 9999999999999999999987632 22211 011234688999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCce-eec
Q 023343 162 VMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPY-SIT 240 (283)
Q Consensus 162 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~-~~~ 240 (283)
+.+.|++.+++.... .+.++++++...+||+..++++++++.+++++++++|.++.. ...
T Consensus 261 v~~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 321 (377)
T PRK08588 261 VISLLQEIINEVNQN-------------------GAAQLSLDIYSNHRPVASDKDSKLVQLAKDVAKSYVGQDIPLSAIP 321 (377)
T ss_pred HHHHHHHHHHHHhhc-------------------cCCceEEEEecCCCCcCCCCCCHHHHHHHHHHHHhhCCCCceecCC
Confidence 999999998875321 124567776667888888889999999999999988875443 345
Q ss_pred CCchhhHhhhh--CCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 241 GTLPLIRELQD--EGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 241 gg~~da~~~~~--~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
|+ +|+++|.. .|+|++.||||...++|++||++++++|.++
T Consensus 322 g~-tD~~~~~~~~~~ip~i~~Gpg~~~~~H~~~E~i~~~~l~~~ 364 (377)
T PRK08588 322 GA-TDASSFLKKKPDFPVIIFGPGNNLTAHQVDEYVEKDMYLKF 364 (377)
T ss_pred Cc-ccHHHHhhhcCCCCEEEECCCCCccCCCCCceeEHHHHHHH
Confidence 56 58888775 4899999999966689999999999999875
No 2
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=7.9e-39 Score=285.13 Aligned_cols=252 Identities=21% Similarity=0.239 Sum_probs=205.4
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCC-CCCceeccCCceeEEEEEeecCCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~-~~~i~~~~~G~~~~~i~v~G~~~H 80 (283)
+.|++.+.+++++|.|+|+++||.|+ .|++++++++.++ ++|++++.+|+ ...++++++|..+++|+++|+++|
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~~~--~~d~~i~~~~~~~~~v~~~~~G~~~~~i~~~G~~~H 192 (375)
T TIGR01910 118 KAIREAGIKPNGNIILQSVVDEESGE---AGTLYLLQRGYFK--DADGVLIPEPSGGDNIVIGHKGSIWFKLRVKGKQAH 192 (375)
T ss_pred HHHHHcCCCCCccEEEEEEcCcccCc---hhHHHHHHcCCCC--CCCEEEECCCCCCCceEEEecceEEEEEEEeeeecc
Confidence 45667777789999999999999987 7999999987654 36889999988 477889999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHH
Q 023343 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (283)
Q Consensus 81 ss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~ 160 (283)
+|.|+.|.||+..|+++|++|.++........ .........+++++.|+ +|...|+||++|++.+|+|+.|+++.+
T Consensus 193 s~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~---~~~~~~~~~t~~i~~i~-gG~~~nviP~~~~~~~diR~~~~~~~~ 268 (375)
T TIGR01910 193 ASFPQFGVNAIMKLAKLITELNELEEHIYARN---SYGFIPGPITFNPGVIK-GGDWVNSVPDYCEFSIDVRIIPEENLD 268 (375)
T ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc---cccccCCCccccceeEE-CCCCcCcCCCEEEEEEEeeeCCCCCHH
Confidence 99999999999999999999987642211100 00011124688999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCC-ccccCCCCHHHHHHHHHHHHHhCCCC-cee
Q 023343 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATN-GVACNLDSRGFHVLCKATEEVVGHVN-PYS 238 (283)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~ 238 (283)
++.++|++.++..... .+.+++++....+| ++..++++++++++.+++++.+|.++ +..
T Consensus 269 ~~~~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 329 (375)
T TIGR01910 269 EVKQIIEDVVKALSKS-------------------DGWLYENEPVVKWSGPNETPPDSRLVKALEAIIKKVRGIEPEVLV 329 (375)
T ss_pred HHHHHHHHHHHHHhhc-------------------CcHHhhCCCeeeecCCcCCCCCCHHHHHHHHHHHHHhCCCCeEee
Confidence 9999999999865321 12344443333455 67788999999999999999888653 444
Q ss_pred ecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 239 ITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 239 ~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
+.|+ +|++++.+.|+|++.||||..+++|++|||+++++|.++
T Consensus 330 ~~g~-tD~~~~~~~gip~v~~Gpg~~~~~H~~~E~v~~~~~~~~ 372 (375)
T TIGR01910 330 STGG-TDARFLRKAGIPSIVYGPGDLETAHQVNEYISIKNLVES 372 (375)
T ss_pred eccc-hhHHHHHHcCCcEEEECCCCccccCCCCceeEHHHHHHH
Confidence 5666 599999999999999999976789999999999999875
No 3
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=4.2e-38 Score=285.10 Aligned_cols=260 Identities=14% Similarity=0.172 Sum_probs=204.5
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC-CceeccCCceeEEEEEeecCCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFH 80 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~-~i~~~~~G~~~~~i~v~G~~~H 80 (283)
++|++.+.+++++|.|+|++|||+|+. .|..+|++++.++..++|++++.||+.. .+.++++|.++++|+++|+++|
T Consensus 136 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~l~~~~~~~~~~~d~~i~~ep~~~~~i~~~~~G~~~~~i~v~G~~~H 213 (427)
T PRK13013 136 EAFLAVYPDFAGSIEISGTADEESGGF--GGVAYLAEQGRFSPDRVQHVIIPEPLNKDRICLGHRGVWWAEVETRGRIAH 213 (427)
T ss_pred HHHHHhCCCCCccEEEEEEeccccCCh--hHHHHHHhcCCccccCCCEEEEecCCCCCceEEeeeeEEEEEEEEEccccc
Confidence 567777778899999999999999872 3788888887655334689999999874 6889999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcc-cc-ccccCCCcccceEEecCCCcc----------ceecCccEEE
Q 023343 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKE-QV-YGFETPSTMKPTQWSYPGGGI----------NQIPGECTVS 148 (283)
Q Consensus 81 ss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~~~g~~~----------nviP~~~~~~ 148 (283)
+|.|+.|.||+..|++++.+|++............ .. .......+++++.|+ +|... |+||++|++.
T Consensus 214 ~~~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~~~~~~~~~~~n~IPd~a~~~ 292 (427)
T PRK13013 214 GSMPFLGDSAIRHMGAVLAEIEERLFPLLATRRTAMPVVPEGARQSTLNINSIH-GGEPEQDPDYTGLPAPCVADRCRIV 292 (427)
T ss_pred cCCCCcCcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCcccCCCceeeeEEe-CCCccccccccccccccCCceEEEE
Confidence 99999999999999999999976432111100000 00 000123688999999 77665 9999999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHH
Q 023343 149 GDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATE 228 (283)
Q Consensus 149 ~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~ 228 (283)
+|+|++|+++.+++.++|++.+.+..+... +.+++++....+|++..++++++++.+.++++
T Consensus 293 idiR~~p~~~~~~v~~~i~~~i~~~~~~~~------------------~~~~~~~~~~~~~p~~~~~~~~lv~~l~~a~~ 354 (427)
T PRK13013 293 IDRRFLIEEDLDEVKAEITALLERLKRARP------------------GFAYEIRDLFEVLPTMTDRDAPVVRSVAAAIE 354 (427)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhhCC------------------CceeEEEEcccCCcccCCCCCHHHHHHHHHHH
Confidence 999999999999999999999987643210 24455555556788888889999999999999
Q ss_pred HHhCCCCceeecCCchhhHhhhhCC-C-cEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 229 EVVGHVNPYSITGTLPLIRELQDEG-F-DVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 229 ~~~g~~~~~~~~gg~~da~~~~~~g-~-p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
+.+|.++.....++++|++++.+.| + |++.||||....+|++||||++++|.++
T Consensus 355 ~~~g~~~~~~~~~g~~D~~~~~~~g~~~~~v~fGPg~~~~aH~~nE~v~i~~l~~~ 410 (427)
T PRK13013 355 RVLGRQADYVVSPGTYDQKHIDRIGKLKNCIAYGPGILDLAHQPDEWVGIADMVDS 410 (427)
T ss_pred HhhCCCCceeecCccCCHHHHHhcCCCCCEEEECCCCccccCCCCceeEHHHHHHH
Confidence 9888765444434446999999887 4 6999999977789999999999999875
No 4
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=9e-38 Score=282.42 Aligned_cols=257 Identities=16% Similarity=0.154 Sum_probs=203.5
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hs 81 (283)
++|++.+.+++++|.|+|++|||+|+ .|+.+++.+++ ++|++++.||+...++.+++|..+++|+++|+++|+
T Consensus 147 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~~----~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~H~ 219 (422)
T PRK06915 147 EALIESGIELKGDVIFQSVIEEESGG---AGTLAAILRGY----KADGAIIPEPTNMKFFPKQQGSMWFRLHVKGKAAHG 219 (422)
T ss_pred HHHHHcCCCCCCcEEEEEecccccCC---cchHHHHhcCc----CCCEEEECCCCCccceeecccEEEEEEEEEeecccc
Confidence 46777777888999999999999987 69888887653 578999999998888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHH
Q 023343 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (283)
Q Consensus 82 s~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~ 161 (283)
|.|+.|.||+..+++++..|+++...............+..+.+++++.|+ ||...|+||++|++.+|+|+.|+++.++
T Consensus 220 s~p~~g~nAi~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~a~~~~d~R~~p~~~~~~ 298 (422)
T PRK06915 220 GTRYEGVSAIEKSMFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIE-GGSWPSSVPDSVILEGRCGIAPNETIEA 298 (422)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEee-CCCCCCccCcEEEEEEEEEECCCCCHHH
Confidence 999999999999999999998764211000000000111234689999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcC-CCCccccCCCCHHHHHHHHHHHHHhCCCCc-eee
Q 023343 162 VMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSI 239 (283)
Q Consensus 162 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~-~~~ 239 (283)
+.+.|++.+++...+... ..+..+++++.. .++++.++.|+++++.+++++++++|..+. ...
T Consensus 299 v~~~i~~~l~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~~d~~lv~~l~~a~~~~~G~~~~~~~~ 363 (422)
T PRK06915 299 AKEEFENWIAELNDVDEW---------------FVEHPVEVEWFGARWVPGELEENHPLMTTLEHNFVEIEGNKPIIEAS 363 (422)
T ss_pred HHHHHHHHHHHHhccChh---------------hhcCCceEEeecccCCcccCCCCCHHHHHHHHHHHHHhCCCCeecee
Confidence 999999999876432110 001123444432 245667778999999999999998887543 334
Q ss_pred cCCchhhHhhhhC-CCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 240 TGTLPLIRELQDE-GFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 240 ~gg~~da~~~~~~-g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.|+ +|+++|.+. |+|++.||||..+.+|++||++++++|.++
T Consensus 364 ~g~-tD~~~~~~~~giP~v~fGpg~~~~aH~~dE~v~~~~l~~~ 406 (422)
T PRK06915 364 PWG-TDGGLLTQIAGVPTIVFGPGETKVAHYPNEYIEVDKMIAA 406 (422)
T ss_pred eee-ccHHHHhccCCCCEEEECCCCccccCCCCceeEHHHHHHH
Confidence 556 589999987 999999999977789999999999999865
No 5
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=7.2e-37 Score=272.60 Aligned_cols=244 Identities=22% Similarity=0.202 Sum_probs=196.0
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC-----CceeccCCceeEEEEEee
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~-----~i~~~~~G~~~~~i~v~G 76 (283)
+.|++.+.+++++|+|+|++|||.++. .|++.+++.....+.++|++++.||+.. .+.++++|..+++|+++|
T Consensus 112 ~~l~~~~~~~~~~i~~~~~~~EE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~g~~g~~~~~i~v~G 189 (375)
T PRK13009 112 ERFVAAHPDHKGSIAFLITSDEEGPAI--NGTVKVLEWLKARGEKIDYCIVGEPTSTERLGDVIKNGRRGSLTGKLTVKG 189 (375)
T ss_pred HHHHHhcCCCCceEEEEEEeecccccc--cCHHHHHHHHHHcCcCCCEEEEcCCCcccCCCCeEEEecceEEEEEEEEEe
Confidence 456677777899999999999998652 5999998765434456899999998753 356799999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCC-ccceecCccEEEEEEEeCC
Q 023343 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (283)
Q Consensus 77 ~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~-~~nviP~~~~~~~~~R~~p 155 (283)
+++|+|.|+.|.||+..+++++.+|+....+.. ..+..+.+++++.|+ +|. ..|+||++|++.+|+|++|
T Consensus 190 ~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~--------~~~~~~~~~~i~~i~-~G~~~~nvip~~~~~~~diR~~~ 260 (375)
T PRK13009 190 VQGHVAYPHLADNPIHLAAPALAELAATEWDEG--------NEFFPPTSLQITNID-AGTGATNVIPGELEAQFNFRFST 260 (375)
T ss_pred cCcccCCCCcccCHHHHHHHHHHHHHhhhccCC--------CccCCCceEEEEEEe-cCCCCCcccCCcEEEEEEEecCC
Confidence 999999999999999999999999987532110 112234688999998 664 7899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC
Q 023343 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN 235 (283)
Q Consensus 156 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~ 235 (283)
+++.+++.++|++.++.. +.++++++...++++..+. +++++.+.+++++++|.++
T Consensus 261 ~~~~e~i~~~i~~~~~~~-----------------------~~~~~~~~~~~~~p~~~~~-~~~~~~l~~a~~~~~g~~~ 316 (375)
T PRK13009 261 EHTAESLKARVEAILDKH-----------------------GLDYTLEWTLSGEPFLTPP-GKLVDAVVAAIEAVTGITP 316 (375)
T ss_pred CCCHHHHHHHHHHHHHhc-----------------------CCCeEEEEecCCCcccCCC-cHHHHHHHHHHHHHhCCCc
Confidence 999999999998888742 1345555555566666554 8999999999999888765
Q ss_pred ce-eecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 236 PY-SITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 236 ~~-~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.. ...|+ +|++++.+.|+|++.|||+. ..+|++||||++++|.++
T Consensus 317 ~~~~~~g~-tda~~~~~~g~p~v~~Gp~~-~~~H~~~E~i~~~~l~~~ 362 (375)
T PRK13009 317 ELSTSGGT-SDARFIADYGAQVVEFGPVN-ATIHKVNECVSVADLEKL 362 (375)
T ss_pred eeeccCCC-ccHHHHHHcCCCeEEeccCc-ccCCCCCCcEEHHHHHHH
Confidence 43 34455 59999999999999999995 579999999999999865
No 6
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=1.2e-36 Score=270.69 Aligned_cols=244 Identities=22% Similarity=0.186 Sum_probs=194.2
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC-----CceeccCCceeEEEEEee
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~-----~i~~~~~G~~~~~i~v~G 76 (283)
+.|++.+.+++++|+|+|++|||.++. .|++.+++........+|++++.||+.. .++.+++|..+++++++|
T Consensus 109 ~~l~~~~~~~~~~v~~~~~~dEE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~~~~G~~~~~v~v~G 186 (370)
T TIGR01246 109 ERFVKKNPDHKGSISLLITSDEEGTAI--DGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGNLTIKG 186 (370)
T ss_pred HHHHHhcCCCCCcEEEEEEeccccCCC--cCHHHHHHHHHhcCCCCCEEEEcCCCCcccCCceEEEeeeEEEEEEEEEEc
Confidence 345566667889999999999998752 5999988754323346799999998653 367799999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCC-ccceecCccEEEEEEEeCC
Q 023343 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (283)
Q Consensus 77 ~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~-~~nviP~~~~~~~~~R~~p 155 (283)
+++|+|.|+.|.||+..|+++++.|...... . ...+..+.+++++.|+ +|. ..|+||++|++.+|+|++|
T Consensus 187 ~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~---~-----~~~~~~~~t~~i~~i~-~g~~~~nvvP~~~~~~~diR~~~ 257 (370)
T TIGR01246 187 IQGHVAYPHLANNPIHKAAPALAELTAIKWD---E-----GNEFFPPTSLQITNIH-AGTGANNVIPGELYVQFNLRFST 257 (370)
T ss_pred cCcccCCcccCCCHHHHHHHHHHHHhhhhhc---c-----CCccCCCCceEeeeee-cCCCCCcccCCceEEEEEEecCC
Confidence 9999999999999999999999998764221 1 0112235688999998 665 6899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC
Q 023343 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN 235 (283)
Q Consensus 156 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~ 235 (283)
+++.+++.+.|++.+++. +.++++++....+|+..+ |+++++++.+++++.+|.++
T Consensus 258 ~~~~~~v~~~i~~~~~~~-----------------------~~~~~v~~~~~~~p~~~~-~~~~~~~~~~a~~~~~g~~~ 313 (370)
T TIGR01246 258 EVSDEILKQRVEAILDQH-----------------------GLDYDLEWSLSGEPFLTN-DGKLIDKAREAIEETNGIKP 313 (370)
T ss_pred CCCHHHHHHHHHHHHHHc-----------------------CCCEEEEEecCCcceeCC-CCHHHHHHHHHHHHHhCCCC
Confidence 999999988888877642 134455554445566555 89999999999999888765
Q ss_pred cee-ecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 236 PYS-ITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 236 ~~~-~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
... ..|+ +|++++...|+|++.|||+. ..+|++||++++++|.++
T Consensus 314 ~~~~~~g~-~d~~~~~~~g~p~~~~Gp~~-~~~H~~~E~i~i~~l~~~ 359 (370)
T TIGR01246 314 ELSTGGGT-SDGRFIALMGAEVVEFGPVN-ATIHKVNECVSIEDLEKL 359 (370)
T ss_pred ceecCCCC-chHHHHHHcCCCEEEecCCc-ccCCCCCceeEHHHHHHH
Confidence 444 4555 59999998999999999995 569999999999999875
No 7
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.2e-36 Score=272.89 Aligned_cols=249 Identities=20% Similarity=0.256 Sum_probs=201.6
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC-CceeccCCceeEEEEEeecCCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFH 80 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~-~i~~~~~G~~~~~i~v~G~~~H 80 (283)
+.|++.+ +++|.|+|++|||+|+ .|++++++++.+ ++|++++.+++.. .++++++|..+++|+++|+++|
T Consensus 127 ~~l~~~~---~~~v~~~~~~~EE~g~---~G~~~~~~~~~~---~~d~~i~~~~~~~~~i~~~~~G~~~~~i~v~G~~~H 197 (394)
T PRK08651 127 ERLDPAG---DGNIELAIVPDEETGG---TGTGYLVEEGKV---TPDYVIVGEPSGLDNICIGHRGLVWGVVKVYGKQAH 197 (394)
T ss_pred HHHHhcC---CCCEEEEEecCccccc---hhHHHHHhccCC---CCCEEEEecCCCCCceEEecccEEEEEEEEEEeccc
Confidence 3454443 7899999999999987 799999987653 3688999998876 7889999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceE--EecCCCccceecCccEEEEEEEeCCCCC
Q 023343 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ--WSYPGGGINQIPGECTVSGDVRLTPFYN 158 (283)
Q Consensus 81 ss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~g~~~nviP~~~~~~~~~R~~p~~~ 158 (283)
+|.|+.|.||+..|++++.+|++...+...... .........+++++. |+ +|.+.|+||++|++.+|+|++|+++
T Consensus 198 ~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~i~-gG~~~nviP~~a~~~~diR~~~~~~ 274 (394)
T PRK08651 198 ASTPWLGINAFEAAAKIAERLKSSLSTIKSKYE--YDDERGAKPTVTLGGPTVE-GGTKTNIVPGYCAFSIDRRLIPEET 274 (394)
T ss_pred cCCCccccCHHHHHHHHHHHHHHHHHhhhcccc--ccccccCCCceeecceeee-CCCCCCccCCEEEEEEEeeeCCCCC
Confidence 999999999999999999999865321111000 000011234677888 88 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCC-Cce
Q 023343 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPY 237 (283)
Q Consensus 159 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~-~~~ 237 (283)
.+++++.+++.++..... ++++++++....+|++..++++++++.+++++++++|.+ .+.
T Consensus 275 ~e~i~~~i~~~~~~~~~~-------------------~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~g~~~~~~ 335 (394)
T PRK08651 275 AEEVRDELEALLDEVAPE-------------------LGIEVEFEITPFSEAFVTDPDSELVKALREAIREVLGVEPKKT 335 (394)
T ss_pred HHHHHHHHHHHHHHHhhc-------------------cCCCeeEEEecccCCccCCCCCHHHHHHHHHHHHHhCCCCcee
Confidence 999999999999875432 234566766666788888889999999999999988864 344
Q ss_pred eecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 238 SITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 238 ~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
...|+ +|+++|...|+|++.||||....+|++||++++++|.++
T Consensus 336 ~~~g~-tD~~~~~~~gip~v~~Gpg~~~~~H~~~E~i~~~~l~~~ 379 (394)
T PRK08651 336 ISLGG-TDARFFGAKGIPTVVYGPGELELAHAPDEYVEVKDVEKA 379 (394)
T ss_pred eecCc-ccHHHHhhCCCcEEEECCCChHhcCCCCceeEHHHHHHH
Confidence 55677 589999999999999999975689999999999999865
No 8
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=2.2e-36 Score=271.75 Aligned_cols=251 Identities=23% Similarity=0.282 Sum_probs=197.4
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHc--cccccCCCCceEEec---CCCCCceeccCCceeEEEEEee
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD--GLLNKLKGGPLYWID---TADKQPCIGTGGMIPWKLHVTG 76 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~--~~~~~~~~d~~~~~e---~~~~~i~~~~~G~~~~~i~v~G 76 (283)
++|++.+.+++++|.|+|++|||.|+. .|+.++++. +.+. +.|++++.+ |+...++++++|.++++|+++|
T Consensus 130 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~~~~~--~~d~~i~~~~~~~~~~~i~~~~~G~~~~~v~v~G 205 (400)
T PRK13983 130 KALMDLGIRPKYNLGLAFVSDEETGSK--YGIQYLLKKHPELFK--KDDLILVPDAGNPDGSFIEIAEKSILWLKFTVKG 205 (400)
T ss_pred HHHHHhCCCCCCcEEEEEEeccccCCc--ccHHHHHhhcccccC--CCCEEEEecCCCCCCceeEEeecceEEEEEEEEe
Confidence 567777878999999999999998873 489999986 3332 246788744 4455578899999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccC-CCcccceEEecCC-CccceecCccEEEEEEEeC
Q 023343 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQWSYPG-GGINQIPGECTVSGDVRLT 154 (283)
Q Consensus 77 ~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~g-~~~nviP~~~~~~~~~R~~ 154 (283)
+++|+|.|+.|+||+..+++++..+++.....+... ...+.+ ..+++++.+. +| ...|+||++|++.+|+|++
T Consensus 206 ~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~g~~~~nvvp~~~~~~~diR~~ 280 (400)
T PRK13983 206 KQCHASTPENGINAHRAAADFALELDEALHEKFNAK----DPLFDPPYSTFEPTKKE-ANVDNINTIPGRDVFYFDCRVL 280 (400)
T ss_pred EccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc----ccccCCCCcccccceee-cCCcCCcccCCeeEEEEEEEeC
Confidence 999999999999999999999999987222222211 001111 1366777887 55 6889999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcC-CCCccccCCCCHHHHHHHHHHHHHhCC
Q 023343 155 PFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGH 233 (283)
Q Consensus 155 p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~d~~~~~~l~~~~~~~~g~ 233 (283)
|+++.+++++.|++.++..... .+.+++++... .++++.+++|+++++.+.+++++++|.
T Consensus 281 p~~~~~~v~~~l~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~g~ 341 (400)
T PRK13983 281 PDYDLDEVLKDIKEIADEFEEE-------------------YGVKIEVEIVQREQAPPPTPPDSEIVKKLKRAIKEVRGI 341 (400)
T ss_pred CCCCHHHHHHHHHHHHHHhccc-------------------cCcceeEEEeeccCCccCCCCCcHHHHHHHHHHHHhcCC
Confidence 9999999999999998865321 12455665544 456777889999999999999999886
Q ss_pred CC-ceeecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 234 VN-PYSITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 234 ~~-~~~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
++ +..+.|+ +|++++...|+|++.|||+. ..+|++||||+++++.++
T Consensus 342 ~~~~~~~~g~-td~~~~~~~gip~v~~Gp~~-~~~H~~nE~v~i~~l~~~ 389 (400)
T PRK13983 342 EPKVGGIGGG-TVAAFLRKKGYPAVVWSTLD-ETAHQPNEYAKISNLIED 389 (400)
T ss_pred CceeeeecCc-HHHHHHHHcCCCEEEeCCcc-ccCCCCCceeeHHHHHHH
Confidence 54 4445556 69999988899999999985 589999999999999876
No 9
>PRK08652 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=1.8e-36 Score=267.30 Aligned_cols=226 Identities=19% Similarity=0.250 Sum_probs=187.3
Q ss_pred CceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCcCCCCCCCCH
Q 023343 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (283)
Q Consensus 11 ~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hss~p~~g~na 90 (283)
++++|.|+|++|||.|+ .|+++++++. ++|++++.||+...+.++++|..+++|+++|+++|++.|+.|.||
T Consensus 107 ~~~~v~~~~~~dEE~g~---~G~~~~~~~~-----~~d~~i~~ep~~~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nA 178 (347)
T PRK08652 107 EDLNVGIAFVSDEEEGG---RGSALFAERY-----RPKMAIVLEPTDLKVAIAHYGNLEAYVEVKGKPSHGACPESGVNA 178 (347)
T ss_pred cCCCEEEEEecCcccCC---hhHHHHHHhc-----CCCEEEEecCCCCceeeecccEEEEEEEEEeeecccCCCCcCcCH
Confidence 45799999999999987 7999998752 357999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHH
Q 023343 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (283)
Q Consensus 91 i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l 170 (283)
+..|++++..|+++... ... .+. .+++++.|+ +|...|+||++|++.+|+|++|+++.+++.+++++.+
T Consensus 179 i~~~a~~i~~l~~~~~~-~~~-------~~~--~~~~~~~i~-gg~~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~ 247 (347)
T PRK08652 179 IEKAFEMLEKLKELLKA-LGK-------YFD--PHIGIQEII-GGSPEYSIPALCRLRLDARIPPEVEVEDVLDEIDPIL 247 (347)
T ss_pred HHHHHHHHHHHHHHHHh-hhc-------ccC--CCCcceeee-cCCCCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999999999875321 110 111 145677788 8889999999999999999999999999999998888
Q ss_pred HHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCC-CceeecCCchhhHhh
Q 023343 171 DDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIREL 249 (283)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~-~~~~~~gg~~da~~~ 249 (283)
+.. .+++++...+|++.+++|+++++++.+++++. |.+ .+....|+ +|+++|
T Consensus 248 ~~~-------------------------~v~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~-g~~~~~~~~~g~-tDa~~~ 300 (347)
T PRK08652 248 DEY-------------------------TVKYEYTEIWDGFELDEDEEIVQLLEKAMKEV-GLEPEFTVMRSW-TDAINF 300 (347)
T ss_pred Hhc-------------------------CceEEEeccCCcccCCCCCHHHHHHHHHHHHh-CCCCCcCcCCcc-chhHHH
Confidence 531 12333334457777788999999999999998 754 34445666 599999
Q ss_pred hhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 250 QDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 250 ~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.+.|+|++.||||....+|++|||+++++|.++
T Consensus 301 ~~~gip~v~~Gpg~~~~~H~~nE~i~i~~l~~~ 333 (347)
T PRK08652 301 RYNGTKTVVWGPGELDLCHTKFERIDVREVEKA 333 (347)
T ss_pred HHCCCCEEEECCCchhhcCCCCceeeHHHHHHH
Confidence 889999999999976789999999999999875
No 10
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=1.9e-36 Score=268.92 Aligned_cols=245 Identities=18% Similarity=0.215 Sum_probs=196.5
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hs 81 (283)
++|++. .++++|.|+|++|||.|+ .|++++++++. .++|++++.+|+...++.+++|..+++|+++|+++|+
T Consensus 111 ~~l~~~--~~~~~v~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~v~v~G~~~Hs 182 (364)
T TIGR01892 111 PDLAAE--QLKKPLHLALTADEEVGC---TGAPKMIEAGA---GRPRHAIIGEPTRLIPVRAHKGYASAEVTVRGRSGHS 182 (364)
T ss_pred HHHHhc--CcCCCEEEEEEeccccCC---cCHHHHHHhcC---CCCCEEEECCCCCceeEEeeceEEEEEEEEEcccccc
Confidence 345554 467899999999999987 79999998864 3578999999988877889999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccccc-CCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHH
Q 023343 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (283)
Q Consensus 82 s~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~ 160 (283)
|.|+.|.||+..+++++.+|+++... +... .....|. ...+++++.|+ +|...|+||++|++.+|+|++|+++.+
T Consensus 183 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~~--~~~~~~~~~~~~~~i~~i~-gg~~~nviP~~~~~~~diR~~p~~~~~ 258 (364)
T TIGR01892 183 SYPDSGVNAIFRAGRFLQRLVHLADT-LLRE--DLDEGFTPPYTTLNIGVIQ-GGKAVNIIPGACEFVFEWRPIPGMDPE 258 (364)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHHH-hccC--CCCccCCCCCceEEEeeee-cCCCCcccCCeEEEEEEeecCCCCCHH
Confidence 99999999999999999999875321 1100 0011121 13588999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceeec
Q 023343 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSIT 240 (283)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~ 240 (283)
++.+.|++.++...+. ..+.+++++....+|++.+++|+++++.+.++ .+.++.. ..
T Consensus 259 ~v~~~i~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~-~~ 315 (364)
T TIGR01892 259 ELLQLLETIAQALVRD------------------EPGFEVQIEVVSTDPGVNTEPDAELVAFLEEL----SGNAPEV-VS 315 (364)
T ss_pred HHHHHHHHHHHHHHhh------------------CCCceEEEEEccCCCCcCCCCCCHHHHHHHHH----hCCCCce-ec
Confidence 9999999998875321 11355666666678888888999999988654 3543322 34
Q ss_pred CCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 241 GTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 241 gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
+| +|+++|...|+|++.||||....+|++|||+++++|.++
T Consensus 316 ~~-tD~~~~~~~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~ 356 (364)
T TIGR01892 316 YG-TEAPQFQELGAEAVVCGPGDIRQAHQPDEYVEIEDLVRC 356 (364)
T ss_pred cc-ccHHHHHhCCCcEEEECCCChHhCCCCCceeeHHHHHHH
Confidence 56 489999989999999999976789999999999999875
No 11
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=5.7e-36 Score=267.72 Aligned_cols=254 Identities=17% Similarity=0.240 Sum_probs=197.6
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hs 81 (283)
++|++. .++++|.|+|++|||.|+ .|+++|+++......++|++++.+|+...++++++|..+++|+++|+++|+
T Consensus 117 ~~l~~~--~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~~~~~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~Hs 191 (385)
T PRK07522 117 PELAAA--PLRRPLHLAFSYDEEVGC---LGVPSMIARLPERGVKPAGCIVGEPTSMRPVVGHKGKAAYRCTVRGRAAHS 191 (385)
T ss_pred HHHHhC--CCCCCEEEEEEeccccCC---ccHHHHHHHhhhcCCCCCEEEEccCCCCeeeeeecceEEEEEEEEeecccc
Confidence 345554 467899999999999987 799999986533344678999999988889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccC-CCcccceEEecCCCccceecCccEEEEEEEeCCCCCHH
Q 023343 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (283)
Q Consensus 82 s~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~ 160 (283)
|.|+.|.||+..|++++.+|+++..+..... .....|.. ..+++++.|+ +|...|+||++|++.+|+|++|+++.+
T Consensus 192 ~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~t~~i~~i~-gG~~~nviP~~a~~~~diR~~~~~~~~ 268 (385)
T PRK07522 192 SLAPQGVNAIEYAARLIAHLRDLADRLAAPG--PFDALFDPPYSTLQTGTIQ-GGTALNIVPAECEFDFEFRNLPGDDPE 268 (385)
T ss_pred CCCccCcCHHHHHHHHHHHHHHHHHHHhhcC--CCCcCCCCCcceeEEeeee-cCccccccCCceEEEEEEccCCCCCHH
Confidence 9999999999999999999987532111100 00111222 2578999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-hhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceee
Q 023343 161 DVMKRLQEYVDDIN-ENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSI 239 (283)
Q Consensus 161 ~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~ 239 (283)
++.+.|++.+++.. ... .. ...+++++++....+|++..++++++++.+++++ ++......
T Consensus 269 ~i~~~i~~~i~~~~~~~~---~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~ 330 (385)
T PRK07522 269 AILARIRAYAEAELLPEM---RA-----------VHPEAAIEFEPLSAYPGLDTAEDAAAARLVRALT----GDNDLRKV 330 (385)
T ss_pred HHHHHHHHHHHhhcchhh---hh-----------hcCCCcEEEEeccCCCCCCCCCCcHHHHHHHHHh----CCCCcceE
Confidence 99999999887621 000 00 1123566666666789998888999999877644 44333334
Q ss_pred cCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 240 TGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 240 ~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.++ +|+++|...|+|++.||||....+|++||+|++++|.++
T Consensus 331 ~~~-td~~~~~~~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~ 372 (385)
T PRK07522 331 AYG-TEAGLFQRAGIPTVVCGPGSIEQAHKPDEFVELAQLAAC 372 (385)
T ss_pred eee-cchHHhccCCCCEEEECCCChhhCCCCCccccHHHHHHH
Confidence 456 589999888999999999976789999999999999875
No 12
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=6.8e-36 Score=270.24 Aligned_cols=255 Identities=14% Similarity=0.153 Sum_probs=201.2
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hs 81 (283)
++|++.+..++++|.|+|++|||.++ .|+..++..++ .+|++++.||+...++++++|..+++|+++|+++|+
T Consensus 151 ~~l~~~~~~~~~~i~~~~~~dEE~~g---~g~~~~~~~~~----~~d~~iv~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs 223 (427)
T PRK06837 151 DALRAAGLAPAARVHFQSVIEEESTG---NGALSTLQRGY----RADACLIPEPTGEKLVRAQVGVIWFRLRVRGAPVHV 223 (427)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---HhHHHHHhcCc----CCCEEEEcCCCCCccccccceeEEEEEEEEeecccc
Confidence 45677777889999999999999887 68888877653 568999999998888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCC--ccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCH
Q 023343 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHP--KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (283)
Q Consensus 82 s~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~ 159 (283)
|.|+.|.||+..+++++++|+++... +.... .....++..+.+++++.|+ +|...|+||++|++.+++|+.|+++.
T Consensus 224 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~~~~~~~~~~~~~~~~t~ni~~i~-gG~~~nvVP~~~~~~~~ir~~p~~~~ 301 (427)
T PRK06837 224 REAGTGANAIDAAYHLIQALRELEAE-WNARKASDPHFEDVPHPINFNVGIIK-GGDWASSVPAWCDLDCRIAIYPGVTA 301 (427)
T ss_pred CCcccCcCHHHHHHHHHHHHHHHHHH-HhhcccCCCcccCCCCceeEeeeeEe-CCCCCCccCCEEEEEEEEeECCCCCH
Confidence 99999999999999999999875321 11000 0000011234588999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcC-CCCccccCCCCHHHHHHHHHHHHHhCCCC-ce
Q 023343 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGHVN-PY 237 (283)
Q Consensus 160 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~ 237 (283)
+++.+.|++.++....+..... +..+++++.. ..+++.+++|+++++.+.+++++.+|.+. +.
T Consensus 302 ~~v~~~i~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~~~~g~~~~~~ 366 (427)
T PRK06837 302 ADAQAEIEACLAAAARDDRFLS---------------NNPPEVVWSGFLAEGYVLEPGSEAEAALARAHAAVFGGPLRSF 366 (427)
T ss_pred HHHHHHHHHHHHHHHhcChhhh---------------hCCCeEEEEecccCCcCCCCCCHHHHHHHHHHHHHhCCCCeee
Confidence 9999999999986543211000 1123344322 46788899999999999999999888654 34
Q ss_pred eecCCchhhHhhhh-CCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 238 SITGTLPLIRELQD-EGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 238 ~~~gg~~da~~~~~-~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.+.|+ +|++++.. .|+|++.||||. .++|++||+|++++|.++
T Consensus 367 ~~~g~-tDa~~~~~~~gip~v~~Gp~~-~~~H~~nE~i~i~~l~~~ 410 (427)
T PRK06837 367 VTTAY-TDTRFYGLYYGIPALCYGPSG-EGIHGFDERVDLESVRKV 410 (427)
T ss_pred EEeec-cchHHHhccCCCCEEEECCCC-CccCCCCceEEHHHHHHH
Confidence 45666 59999985 799999999994 579999999999999875
No 13
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=100.00 E-value=8.9e-36 Score=262.67 Aligned_cols=218 Identities=18% Similarity=0.202 Sum_probs=182.3
Q ss_pred eeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC-CCceeccCCceeEEEEEeecCCCcCCCCCCCCHH
Q 023343 13 STVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPL 91 (283)
Q Consensus 13 ~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~-~~i~~~~~G~~~~~i~v~G~~~Hss~p~~g~nai 91 (283)
.+|.|+|++|||.|+ .|++++++++. ++|++++.||+. ..++++++|..+++|+++|+++|+|.|+ .||+
T Consensus 112 ~~i~~~~~~dEE~g~---~G~~~l~~~~~----~~d~~i~~ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p~--~nAi 182 (346)
T PRK00466 112 IKVMVSGLADEESTS---IGAKELVSKGF----NFKHIIVGEPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSAK--SNLI 182 (346)
T ss_pred CCEEEEEEcCcccCC---ccHHHHHhcCC----CCCEEEEcCCCCCCceEEEeeEEEEEEEEEEeeccccCCCC--cCHH
Confidence 468999999999987 79999998753 578999999987 4688999999999999999999999886 5999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 023343 92 ELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171 (283)
Q Consensus 92 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~ 171 (283)
..|++++.+|.+.. ..+ ...+++++.|+ +|.+.|+||++|++.+|+|++|+++.+++.++|++.+.
T Consensus 183 ~~~~~~l~~l~~~~-~~~------------~~~t~~~~~i~-gG~~~NvvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~ 248 (346)
T PRK00466 183 VDISKKIIEVYKQP-ENY------------DKPSIVPTIIR-AGESYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQ 248 (346)
T ss_pred HHHHHHHHHHHhcc-ccC------------CCCcceeeEEe-cCCcCcccCCceEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 99999999986532 111 12578999999 99999999999999999999999999998888887765
Q ss_pred HhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-ceeecCCchhhHhhh
Q 023343 172 DINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQ 250 (283)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~~~gg~~da~~~~ 250 (283)
+ ++++....+|++.+++++|+++++.+++++. |.++ +..+.|+ +|+++|.
T Consensus 249 ~---------------------------~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~-g~~~~~~~~~g~-tD~~~~~ 299 (346)
T PRK00466 249 E---------------------------CGLKIVDETPPVKVSINNPVVKALMRALLKQ-NIKPRLVRKAGT-SDMNILQ 299 (346)
T ss_pred h---------------------------CcEeeccCCCCcccCCCCHHHHHHHHHHHHh-CCCceEEecCCc-CcHHHHH
Confidence 3 1223334578888888999999999999985 6544 3334556 5999999
Q ss_pred hCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 251 DEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 251 ~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
+.++|++.||||....+|++|||+++++|.++
T Consensus 300 ~~~~~~v~fGpg~~~~aH~~nE~i~i~~l~~~ 331 (346)
T PRK00466 300 KITTSIATYGPGNSMLEHTNQEKITLDEIYIA 331 (346)
T ss_pred HhCCCEEEECCCCcccccCCCceeeHHHHHHH
Confidence 88899999999977789999999999999875
No 14
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=9.4e-36 Score=266.94 Aligned_cols=246 Identities=15% Similarity=0.065 Sum_probs=191.7
Q ss_pred cccccccCCCceeEEEEEEecccc-CCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEEN-SAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFH 80 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~-g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~H 80 (283)
+.|++.+..++++|.|+++++||. ++ .|+.+++++.. +++|++++.||+...+..+++|..+++|+++|+++|
T Consensus 121 ~~l~~~~~~~~~~v~~~~~~dEE~~~g---~~~~~~~~~~~---~~~d~~i~~ep~~~~i~~g~~G~~~~~v~v~G~~~H 194 (395)
T TIGR03526 121 KIIKDLGLLDDYTLLVTGTVQEEDCDG---LCWQYIIEEDK---IKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCH 194 (395)
T ss_pred HHHHHcCCCCCceEEEEEecccccCCc---HhHHHHHhccC---CCCCEEEecCCCCceEEEEcceEEEEEEEEecCCCc
Confidence 456777767788999999999994 33 57778876543 357899999999888899999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCC-CccceecCccEEEEEEEeCCCCCH
Q 023343 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNV 159 (283)
Q Consensus 81 ss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~nviP~~~~~~~~~R~~p~~~~ 159 (283)
+|.|+.|.||+..|++++.+|+++... +.. ..+....+++++.|+ +| ...|+||++|++.+|+|++|+++.
T Consensus 195 s~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~------~~~~~~~~~~v~~i~-~g~~~~nviP~~~~~~~d~R~~~~~~~ 266 (395)
T TIGR03526 195 GSAPERGDNAIYKMAPILKELSQLNAN-LVE------DPFLGKGTLTVSEIF-FSSPSRCAVADGCTISIDRRLTWGETW 266 (395)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHhhhh-hcC------CcccCccceeeeeee-cCCCCCCccCCeEEEEEEEecCCCCCH
Confidence 999999999999999999999875321 110 011123588999998 55 479999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEE-------------EcCCCCccccCCCCHHHHHHHHH
Q 023343 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLT-------------FDEATNGVACNLDSRGFHVLCKA 226 (283)
Q Consensus 160 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~p~~~~~~d~~~~~~l~~~ 226 (283)
+++.+.|++.++.... +.++++. ....+|++.+++++|+++++.++
T Consensus 267 ~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 325 (395)
T TIGR03526 267 EYALEQIRNLPAVQGA---------------------EAEVEMYEYDRPSYTGLVYPTECYFPTWVLPEDHLITKAALET 325 (395)
T ss_pred HHHHHHHHHHHHhcCC---------------------cceEEEeccccccccccccccccccCccccCCCCHHHHHHHHH
Confidence 9999999888654210 0112211 11246888888999999999999
Q ss_pred HHHHhCCCCceeecCCchhh-HhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 227 TEEVVGHVNPYSITGTLPLI-RELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 227 ~~~~~g~~~~~~~~gg~~da-~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
+++++|..+.....++++|+ .++.+.|+|++.||||...++|++||||++++|.++
T Consensus 326 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~dE~i~i~~l~~~ 382 (395)
T TIGR03526 326 YKRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVKA 382 (395)
T ss_pred HHHHhCCCCceeeeeeecccceehhhcCCCEEEECCcchhhccCCCceEEHHHHHHH
Confidence 99999875433322222345 555668999999999976789999999999999875
No 15
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=1.1e-35 Score=266.55 Aligned_cols=246 Identities=15% Similarity=0.083 Sum_probs=191.5
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hs 81 (283)
++|++.+..++++|.|++++|||.++ +.|..++++.. .+++|++++.||+...++++++|..+++|+++|+++|+
T Consensus 121 ~~l~~~g~~~~~~i~~~~~~dEE~~~--g~~~~~~~~~~---~~~~d~~iv~ep~~~~i~~g~~G~~~~~v~~~G~~~Hs 195 (395)
T TIGR03320 121 KIIKDLGLLDDYTLLVTGTVQEEDCD--GLCWQYIIEED---GIKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHG 195 (395)
T ss_pred HHHHHcCCCCCceEEEEecccccccC--chHHHHHHHhc---CCCCCEEEEcCCCccceEEecceEEEEEEEEeeecccc
Confidence 46777777788899999999999753 13456676543 23578999999998889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCC-CccceecCccEEEEEEEeCCCCCHH
Q 023343 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVT 160 (283)
Q Consensus 82 s~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~nviP~~~~~~~~~R~~p~~~~~ 160 (283)
|.|+.|.||+..+++++..|+++... ... ..+..+.+++++.|+ +| ...|+||++|++.+|+|++|+++.+
T Consensus 196 s~p~~g~nAi~~~~~~l~~l~~~~~~-~~~------~~~~~~~t~~v~~i~-~g~~~~NviP~~~~~~~diR~~p~~~~~ 267 (395)
T TIGR03320 196 SAPERGDNAIYKMAPILKELSQLNAN-LVE------DPFLGKGTLTVSEIF-FSSPSRCAVADGCTISIDRRLTWGETWE 267 (395)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHh-hcC------CcccCcCceeeeeee-cCCCCcCccCCEEEEEEEEecCCCCCHH
Confidence 99999999999999999999875321 110 011123588899998 55 4789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEE-------------EcCCCCccccCCCCHHHHHHHHHH
Q 023343 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLT-------------FDEATNGVACNLDSRGFHVLCKAT 227 (283)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~p~~~~~~d~~~~~~l~~~~ 227 (283)
++.+.|++.+..... ..++++. ....+|++.+++++|+++.+.+++
T Consensus 268 ~i~~~i~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 326 (395)
T TIGR03320 268 YALEQIRNLPAVQGA---------------------EAKVEMYNYDRPSYTGLVYPTECYFPTWVLPEDHLITKAALETY 326 (395)
T ss_pred HHHHHHHHHHhhcCC---------------------CceEeeeccCcccccccccccccccCccccCCCCHHHHHHHHHH
Confidence 999999887653210 0122211 112478888889999999999999
Q ss_pred HHHhCCCCcee-ecCCchhh-HhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 228 EEVVGHVNPYS-ITGTLPLI-RELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 228 ~~~~g~~~~~~-~~gg~~da-~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
++++|.++... ..+++ |+ +++...|+|++.||||...++|++||||++++|.++
T Consensus 327 ~~~~g~~~~~~~~~~~~-~~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~ 382 (395)
T TIGR03320 327 KRLFGKEPGVDKWTFST-NGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVRA 382 (395)
T ss_pred HHHhCCCCceeecceec-ccceehhhcCCCEEEECCCchhhccCCCcEEEHHHHHHH
Confidence 99998764333 33333 44 566778999999999976789999999999999875
No 16
>PRK08596 acetylornithine deacetylase; Validated
Probab=100.00 E-value=2.1e-35 Score=266.63 Aligned_cols=255 Identities=19% Similarity=0.200 Sum_probs=199.3
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecC---
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKL--- 78 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~--- 78 (283)
++|++.+..++++|.|+|++|||+|+ .|+.++++++. .+|++++.||+... +++++|...++++++|+.
T Consensus 131 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~~----~~d~~i~~ep~~~~-~~~~~G~~~~~~~v~g~~~~~ 202 (421)
T PRK08596 131 QLLHEAGIELPGDLIFQSVIGEEVGE---AGTLQCCERGY----DADFAVVVDTSDLH-MQGQGGVITGWITVKSPQTFH 202 (421)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---cCHHHHHhcCC----CCCEEEECCCCCCc-cccccceeeEEEEEEeecccc
Confidence 56777887889999999999999987 79999998753 47899999997765 489999998888888764
Q ss_pred -------CCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccc-cCCCcccceEEecCCCccceecCccEEEEE
Q 023343 79 -------FHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF-ETPSTMKPTQWSYPGGGINQIPGECTVSGD 150 (283)
Q Consensus 79 -------~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~g~~~nviP~~~~~~~~ 150 (283)
+|++.|+.|.||+..|++++..|+++... +.... ....+ ....+++++.|+ +|...|+||++|++.+|
T Consensus 203 ~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~~~~~~d 278 (421)
T PRK08596 203 DGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELERH-WAVMK--SYPGFPPGTNTINPAVIE-GGRHAAFIADECRLWIT 278 (421)
T ss_pred cccccccccccCCccCcCHHHHHHHHHHHHHHHHHH-Hhhcc--cCccCCCCCcceeeeeee-CCCCCCccCceEEEEEE
Confidence 79999999999999999999999875311 10000 00111 123688999999 99999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEE------EE-cCCCCccccCCCCHHHHHH
Q 023343 151 VRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTL------TF-DEATNGVACNLDSRGFHVL 223 (283)
Q Consensus 151 ~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~p~~~~~~d~~~~~~l 223 (283)
+|+.|+++.+++.++|++.+.+......+++. . ...+++ +. ...+|++.+++++|+++++
T Consensus 279 ~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 345 (421)
T PRK08596 279 VHFYPNETYEQVIKEIEEYIGKVAAADPWLRE-----------N--PPQFKWGGESMIEDRGEIFPSLEIDSEHPAVKTL 345 (421)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHhcChhhhh-----------C--CceeEEecccccccccccCCCccCCCCchHHHHH
Confidence 99999999999999999999875432110110 0 011211 11 1247888899999999999
Q ss_pred HHHHHHHhCCCCcee-ecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 224 CKATEEVVGHVNPYS-ITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 224 ~~~~~~~~g~~~~~~-~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.+++++++|.++... ..|+ +|++++...|+|++.||||....+|++|||+++++|.++
T Consensus 346 ~~a~~~~~g~~~~~~~~~g~-tD~~~~~~~gip~v~~Gpg~~~~~H~~~E~v~i~~~~~~ 404 (421)
T PRK08596 346 SSAHESVLSKNAILDMSTTV-TDGGWFAEFGIPAVIYGPGTLEEAHSVNEKVEIEQLIEY 404 (421)
T ss_pred HHHHHHHhCCCCeeeEEeee-cchhhhhhcCCCEEEECCCcccccCCCCceEEHHHHHHH
Confidence 999999988765433 4455 699999889999999999976789999999999999875
No 17
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=4.8e-35 Score=260.12 Aligned_cols=246 Identities=16% Similarity=0.163 Sum_probs=187.5
Q ss_pred cCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCcCCCCCC
Q 023343 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKA 87 (283)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hss~p~~g 87 (283)
+..++++|.|+|++|||+++. ..|+.+++++.. ...++|++++.||+...++++++|.++++|+++|+++|+|.|+.|
T Consensus 124 ~~~~~~~i~~~~~~dEE~~~~-~~G~~~~~~~~~-~~~~~d~~iv~Ept~~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g 201 (373)
T TIGR01900 124 ETELKHDLTLIAYDCEEVAAE-KNGLGHIRDAHP-DWLAADFAIIGEPTGGGIEAGCNGNIRFDVTAHGVAAHSARAWLG 201 (373)
T ss_pred ccCCCCCEEEEEEecccccCC-CCCHHHHHHhCc-ccccCCEEEEECCCCCcccccceeeEEEEEEEEeeccccCCCCCC
Confidence 456889999999999998641 149999998642 223578999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHH
Q 023343 88 INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167 (283)
Q Consensus 88 ~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~ 167 (283)
.||+..|++++.+|+++....... ..+....+++++.|+ +|.+.|+||++|++.+|+|+.|+++.+++.++|+
T Consensus 202 ~NAi~~~~~~i~~l~~l~~~~~~~------~~~~~~~t~~v~~I~-GG~~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~ 274 (373)
T TIGR01900 202 DNAIHKAADIINKLAAYEAAEVNI------DGLDYREGLNATFCE-GGKANNVIPDEARMHLNFRFAPDKDLAEAKALMM 274 (373)
T ss_pred CCHHHHHHHHHHHHHHhhcccccc------cCCcccceEEEEEEe-CCCCCcccCCeEEEEEEEecCCCcCHHHHHHHHH
Confidence 999999999999998753221110 011112578999999 9999999999999999999999999999999997
Q ss_pred HHHHHhh----hhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCc
Q 023343 168 EYVDDIN----ENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTL 243 (283)
Q Consensus 168 ~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~ 243 (283)
+.++... +... + +. .+ + . ..+++++.....+++..+.++++++.+.+++++++|.++.. ..|+|
T Consensus 275 ~~~~~~~~~~~~~~~--~-~~---~~--~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~g~t 342 (373)
T TIGR01900 275 GADAGAELGNGEHVA--E-GG---EF--D-G--QDGIEIAMEDEAGGALPGLGAPLAQDLIDAVGEEKGRDPLA-KFGWT 342 (373)
T ss_pred hhhhhhhhhHHHHHH--h-hc---cc--c-c--cccceEEEcccCCCCCCCCCCHHHHHHHHHHHhccCCCccc-ccCCc
Confidence 7654310 0000 0 00 00 0 0 01344444334455556678999999999999988865433 55664
Q ss_pred hhhHhhhhCCCcEEEEcCCCCccCCCCCcccc
Q 023343 244 PLIRELQDEGFDVQTAGYGLMATYHADNEYCL 275 (283)
Q Consensus 244 ~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~ 275 (283)
|+++|...|+|++.||||...++|++||||.
T Consensus 343 -D~~~~~~~gip~v~~Gpg~~~~aH~~dE~v~ 373 (373)
T TIGR01900 343 -DVARFSALGIPALNFGAGDPLFAHKHDEQCP 373 (373)
T ss_pred -cHHHHHhcCCCEEEeCCCChhhccCCCCCCC
Confidence 8888888899999999997678999999984
No 18
>PRK08737 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=6.7e-35 Score=258.02 Aligned_cols=235 Identities=12% Similarity=0.100 Sum_probs=179.7
Q ss_pred CceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCcCCC-CCCCC
Q 023343 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLP-HKAIN 89 (283)
Q Consensus 11 ~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hss~p-~~g~n 89 (283)
+.++|.|+|++|||.|+. .|++++++.+. ++|++++.||+...+++++||..+++|+++|+++|+|.| +.|+|
T Consensus 117 ~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~----~~~~~iv~Ept~~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~N 190 (364)
T PRK08737 117 GDGDAAFLFSSDEEANDP--RCVAAFLARGI----PYEAVLVAEPTMSEAVLAHRGISSVLMRFAGRAGHASGKQDPSAS 190 (364)
T ss_pred cCCCEEEEEEcccccCch--hhHHHHHHhCC----CCCEEEEcCCCCceeEEecceeEEEEEEEEeeccccCCCcccCCC
Confidence 457999999999999862 48889988753 468999999999989999999999999999999999998 58999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHH
Q 023343 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (283)
Q Consensus 90 ai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~ 169 (283)
|+..|++++.++.+.......+. ... ..+.+++++.|+ ||.+.|+||++|++.+|+|+.|+++.+++.++|++.
T Consensus 191 AI~~~~~~l~~~~~~~~~~~~~~----~~~-~~~~t~~vg~i~-GG~~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~ 264 (364)
T PRK08737 191 ALHQAMRWGGQALDHVESLAHAR----FGG-LTGLRFNIGRVE-GGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGF 264 (364)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc----cCC-CCCCceEEeeEe-cCCCCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHH
Confidence 99999999988755422111100 000 113588999999 999999999999999999999999999998888666
Q ss_pred HHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEc-CCCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCchhhHh
Q 023343 170 VDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFD-EATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRE 248 (283)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~~da~~ 248 (283)
++.. ...+++... ..+|++..++ +++++.+.+.+.+..|.+......++ +|+++
T Consensus 265 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-tDa~~ 319 (364)
T PRK08737 265 AEPA-----------------------AATFEETFRGPSLPSGDIAR-AEERRLAARDVADALDLPIGNAVDFW-TEASL 319 (364)
T ss_pred HHHc-----------------------CCceEEEeccCCCCCcccCc-chHHHHHHHHHHhhhcCCCCceeccc-cCHHH
Confidence 5431 012333332 2456655444 46666555555444565433334445 69999
Q ss_pred hhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 249 LQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 249 ~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
|...|+|+++||||...++|++||||++++|.++
T Consensus 320 ~~~~Gip~v~~GpG~~~~aHt~dE~i~i~~l~~~ 353 (364)
T PRK08737 320 FSAAGYTALVYGPGDIAQAHTADEFVTLDQLQRY 353 (364)
T ss_pred HHHcCCCEEEECCCChhhccCCCcceeHHHHHHH
Confidence 9989999999999976789999999999999875
No 19
>PRK07338 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=265.13 Aligned_cols=239 Identities=16% Similarity=0.113 Sum_probs=192.2
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC--CCceeccCCceeEEEEEeecCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~--~~i~~~~~G~~~~~i~v~G~~~ 79 (283)
++|++.+.+++++|.|+|++|||.|+ .|++.+++++.. +.+++++.||+. +.+..+++|..+++|+++|+++
T Consensus 142 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~~---~~~~~i~~ep~~~~~~v~~~~kG~~~~~v~v~G~~a 215 (402)
T PRK07338 142 LAFERSPLADKLGYDVLINPDEEIGS---PASAPLLAELAR---GKHAALTYEPALPDGTLAGARKGSGNFTIVVTGRAA 215 (402)
T ss_pred HHHHhcCCCCCCCEEEEEECCcccCC---hhhHHHHHHHhc---cCcEEEEecCCCCCCcEEeecceeEEEEEEEEeEcc
Confidence 56777777788999999999999987 699999987532 457899999874 5677899999999999999999
Q ss_pred CcCC-CCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCC
Q 023343 80 HSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (283)
Q Consensus 80 Hss~-p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~ 158 (283)
|+|. |+.|.||+..|+++++.|+++.. .. ...+++++.|+ +|.+.|+||++|++.+|+|+.|+++
T Consensus 216 Hs~~~p~~g~nAi~~~~~~i~~l~~l~~-~~------------~~~t~~vg~i~-gG~~~nvVP~~a~~~~d~R~~~~~~ 281 (402)
T PRK07338 216 HAGRAFDEGRNAIVAAAELALALHALNG-QR------------DGVTVNVAKID-GGGPLNVVPDNAVLRFNIRPPTPED 281 (402)
T ss_pred cCCCCcccCccHHHHHHHHHHHHHhhhc-cC------------CCcEEEEEEEe-cCCCCceeccccEEEEEeccCCHHH
Confidence 9996 89999999999999999987532 11 12588999999 8999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCC-HHHHHHHHHHHHHhCCCCc-
Q 023343 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDS-RGFHVLCKATEEVVGHVNP- 236 (283)
Q Consensus 159 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~-~~~~~l~~~~~~~~g~~~~- 236 (283)
.+++.++|++.+++..+ ..+.+++++....+|++..++++ +++++++++.++ +|.++.
T Consensus 282 ~~~v~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~-~g~~~~~ 341 (402)
T PRK07338 282 AAWAEAELKKLIAQVNQ-------------------RHGVSLHLHGGFGRPPKPIDAAQQRLFEAVQACGAA-LGLTIDW 341 (402)
T ss_pred HHHHHHHHHHHHhcccc-------------------CCCeEEEEEccccCCCCCCCcchHHHHHHHHHHHHH-cCCCccc
Confidence 88888888888876421 12345555433356777666554 799999987766 565443
Q ss_pred eeecCCchhhHhhhhCCCcEE-EEcCCCCccCCCCCcccchhhhhhh
Q 023343 237 YSITGTLPLIRELQDEGFDVQ-TAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 237 ~~~~gg~~da~~~~~~g~p~v-~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
..+.|+ +|++++...|+|++ .|||+ ...+|++||||++++|.++
T Consensus 342 ~~~~g~-tDa~~~~~~giP~v~~~Gpg-~~~~H~~~E~v~i~~l~~~ 386 (402)
T PRK07338 342 KDSGGV-CDGNNLAAAGLPVVDTLGVR-GGNIHSEDEFVILDSLVER 386 (402)
T ss_pred ccCCcc-chHHHHhhcCCCeEeccCCC-CCCCCCccceEehhhHHHH
Confidence 334555 59999988899999 69998 4678999999999999875
No 20
>PRK13004 peptidase; Reviewed
Probab=100.00 E-value=4e-35 Score=263.19 Aligned_cols=247 Identities=15% Similarity=0.111 Sum_probs=192.0
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hs 81 (283)
+.|++.+..++++|.|+|++|||.++ +.|+.+++++.. +++|++++.||+...+.++++|..+++|+++|+++|+
T Consensus 123 ~~l~~~~~~~~~~i~~~~~~~EE~~~--g~~~~~~~~~~~---~~~d~~i~~e~~~~~i~~~~~G~~~~~v~v~G~~~Ha 197 (399)
T PRK13004 123 KIIKDLGLDDEYTLYVTGTVQEEDCD--GLCWRYIIEEDK---IKPDFVVITEPTDLNIYRGQRGRMEIRVETKGVSCHG 197 (399)
T ss_pred HHHHhcCCCCCCeEEEEEEcccccCc--chhHHHHHHhcC---CCCCEEEEccCCCCceEEecceEEEEEEEEecccccc
Confidence 56777787889999999999999643 157888887632 3578999999998889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHH
Q 023343 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (283)
Q Consensus 82 s~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~ 161 (283)
|.|+.|.||+..|++++..|+.+... +.. ..+..+.+++++.|..++.+.|+||++|++.+|+|++|+++.++
T Consensus 198 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~------~~~~~~~~~~v~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~~~ 270 (399)
T PRK13004 198 SAPERGDNAIYKMAPILNELEELNPN-LKE------DPFLGKGTLTVSDIFSTSPSRCAVPDSCAISIDRRLTVGETWES 270 (399)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccc-ccc------CCcCCCceEEEeeeecCCCCCCccCCEEEEEEEEcCCCCCCHHH
Confidence 99999999999999999999876321 100 11122357888888733458999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEE-------------EEEcCCCCccccCCCCHHHHHHHHHHH
Q 023343 162 VMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLT-------------LTFDEATNGVACNLDSRGFHVLCKATE 228 (283)
Q Consensus 162 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~p~~~~~~d~~~~~~l~~~~~ 228 (283)
+.+.+++.+... . ++.+++ ++....+|++.+++++++++.+.++++
T Consensus 271 v~~~i~~~~~~~--~-------------------~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~a~~ 329 (399)
T PRK13004 271 VLAEIRALPAVK--K-------------------ANAKVSMYNYDRPSYTGLVYPTECYFPTWLYPEDHEFVKAAVEAYK 329 (399)
T ss_pred HHHHHHHHHhhc--c-------------------ccceEEEecccCCCcccccccccccccccccCCCCHHHHHHHHHHH
Confidence 999988874321 0 111222 223334788888899999999999999
Q ss_pred HHhCCCCcee-ecCCchhhHhh-hhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 229 EVVGHVNPYS-ITGTLPLIREL-QDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 229 ~~~g~~~~~~-~~gg~~da~~~-~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
+++|.++... ..+++ |+..+ +..|+|++.||||....+|++||++++++|.++
T Consensus 330 ~~~g~~~~~~~~~~~t-d~~~~~~~~Gip~v~~Gpg~~~~aH~~nE~i~i~~l~~~ 384 (399)
T PRK13004 330 GLFGKAPEVDKWTFST-NGVSIAGRAGIPTIGFGPGKEPLAHAPNEYTWKEQLVKA 384 (399)
T ss_pred HHhCCCCeeccccccc-CCeEEehhcCCCEEEECCCcccccCCCCceeEHHHHHHH
Confidence 9988654322 23333 44334 457999999999976689999999999999875
No 21
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-35 Score=266.36 Aligned_cols=256 Identities=20% Similarity=0.219 Sum_probs=194.8
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC-----CceeccCCceeEEEEEee
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~-----~i~~~~~G~~~~~i~v~G 76 (283)
+.|++.+..++++|.|+|++|||.|+ .|+..++++.. ..+++|++++.||+.. .+++++||.++++|+++|
T Consensus 133 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~ii~e~~~~~~~~~~i~~g~kG~~~~~l~v~G 208 (456)
T PRK08201 133 EALLKVEGTLPVNVKFCIEGEEEIGS---PNLDSFVEEEK-DKLAADVVLISDTTLLGPGKPAICYGLRGLAALEIDVRG 208 (456)
T ss_pred HHHHHhcCCCCCCEEEEEEcccccCC---ccHHHHHHhhH-HhccCCEEEEeCCCcCCCCCEEEEEecCCeEEEEEEEEe
Confidence 45655556778899999999999998 68888887642 2245789999998753 378999999999999999
Q ss_pred cCC--CcCCCC-CCCCHHHHHHHHHHHHHhhhcC--------CCCCCCcc-------------------c-ccccc----
Q 023343 77 KLF--HSGLPH-KAINPLELAMEALKVIQTRFYK--------DFPPHPKE-------------------Q-VYGFE---- 121 (283)
Q Consensus 77 ~~~--Hss~p~-~g~nai~~~~~~l~~l~~~~~~--------~~~~~~~~-------------------~-~~~~~---- 121 (283)
+++ |||.|. .+.||+..|+++|++|++...+ .+.+.... . ...+.
T Consensus 209 ~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
T PRK08201 209 AKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGY 288 (456)
T ss_pred CCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcch
Confidence 998 999765 4579999999999999763110 00000000 0 00000
Q ss_pred -------CCCcccceEEecCC----CccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccc
Q 023343 122 -------TPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYV 190 (283)
Q Consensus 122 -------~~~~~~~~~i~~~g----~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 190 (283)
...|++++.|+ || +..|+||++|++.+|+|++|+++.+++.++|++++.+..
T Consensus 289 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~---------------- 351 (456)
T PRK08201 289 TALERTWARPTLELNGVY-GGFQGEGTKTVIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAHT---------------- 351 (456)
T ss_pred HHHHHHHhCCcEEEEeee-cCCCCCCCceEECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHhC----------------
Confidence 12377888887 54 347999999999999999999999999999999987631
Q ss_pred cCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCch--hhHhhhhCCCcEEEEcCCC-CccC
Q 023343 191 LPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLP--LIRELQDEGFDVQTAGYGL-MATY 267 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~~--da~~~~~~g~p~v~~g~g~-~~~~ 267 (283)
..+.+++++....+|++.++.++++++++.+++++++|.++.....|++. |+.|+...|+|+++||||. ..++
T Consensus 352 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~g~~~~~~~~gg~~~~~~~~~~~~gip~v~~GpG~~~~~~ 427 (456)
T PRK08201 352 ----PAGVRVTIRRFDKGPAFVAPIDHPAIQAAARAYEAVYGTEAAFTRMGGSIPVVETFSSQLHIPIVLMGFGLPSENF 427 (456)
T ss_pred ----CCCeEEEEEECCCcCceecCCCCHHHHHHHHHHHHHhCCCceecCCCCcHHHHHHHHHHhCCCEEEecCCCCCCCC
Confidence 11245565555568889999999999999999999998766555555642 6777766899999999996 4689
Q ss_pred CCCCcccchhhhhhh
Q 023343 268 HADNEYCLLSDIRLT 282 (283)
Q Consensus 268 H~~nE~i~~~~l~~~ 282 (283)
|++||||++++|.++
T Consensus 428 H~~nE~v~i~~l~~~ 442 (456)
T PRK08201 428 HAPNEHFHLENFDKG 442 (456)
T ss_pred CCCCCCcCHHHHHHH
Confidence 999999999999875
No 22
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=100.00 E-value=3.9e-35 Score=258.71 Aligned_cols=229 Identities=19% Similarity=0.118 Sum_probs=182.8
Q ss_pred cCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC-CceeccCCceeEEEEEeecCCCcCCCCC
Q 023343 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHK 86 (283)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~-~i~~~~~G~~~~~i~v~G~~~Hss~p~~ 86 (283)
+.+++++|.|+|++|||.|+ .|...++.+.. ++|++++.||++. .++++++|..+++|+++|+++|||.|
T Consensus 107 ~~~~~~~i~~~~~~dEE~g~---~~~~~~l~~~~----~~d~~iv~Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~~-- 177 (348)
T PRK04443 107 EALVRARVSFVGAVEEEAPS---SGGARLVADRE----RPDAVIIGEPSGWDGITLGYKGRLLVTYVATSESFHSAGP-- 177 (348)
T ss_pred cccCCCCEEEEEEcccccCC---hhHHHHHHhcc----CCCEEEEeCCCCccceeeecccEEEEEEEEEeCCCccCCC--
Confidence 44688999999999999988 56666665542 5789999999884 68899999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHH
Q 023343 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (283)
Q Consensus 87 g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i 166 (283)
|.||+..|+++++.|.++.. ...+ ...+..+.+++++.|+ ...|+||++|++.+|+|++|+++.+++++.+
T Consensus 178 g~NAi~~~~~~l~~l~~~~~-~~~~-----~~~~~~~~~~~i~~i~---~~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i 248 (348)
T PRK04443 178 EPNAAEDAIEWWLAVEAWFE-ANDG-----RERVFDQVTPKLVDFD---SSSDGLTVEAEMTVGLRLPPGLSPEEAREIL 248 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCcc-----ccccccccceeeeEEe---cCCCCCCceEEEEEEEccCCCCCHHHHHHHH
Confidence 79999999999999987543 1111 1112223567788887 3469999999999999999999999988888
Q ss_pred HHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCchhh
Q 023343 167 QEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLI 246 (283)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~~da 246 (283)
++.+.. +++++...+|++.++.+++++++++++++++++++......|+ +|+
T Consensus 249 ~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-tD~ 300 (348)
T PRK04443 249 DALLPT---------------------------GTVTFTGAVPAYMVSKRTPLARAFRVAIREAGGTPRLKRKTGT-SDM 300 (348)
T ss_pred HHhCCC---------------------------cEEEEecCCCceecCCCCHHHHHHHHHHHHhcCCcceeccccC-CcH
Confidence 877621 2334445678888889999999999999998775443334455 699
Q ss_pred Hhhhh-CCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 247 RELQD-EGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 247 ~~~~~-~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
++|.+ .|+|++.||||....+|++||||++++|.++
T Consensus 301 ~~~~~~~gip~v~~Gpg~~~~~H~~dE~i~i~~l~~~ 337 (348)
T PRK04443 301 NVVAPAWGCPMVAYGPGDSDLDHTPDEHLPLAEYLRA 337 (348)
T ss_pred HHHhhhcCCCEEEECCCCccccCCCcccccHHHHHHH
Confidence 99876 6999999999976679999999999999875
No 23
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=100.00 E-value=2.9e-35 Score=264.32 Aligned_cols=253 Identities=16% Similarity=0.141 Sum_probs=189.1
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEec-----CCC-CCceeccCCceeEEEEEe
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWID-----TAD-KQPCIGTGGMIPWKLHVT 75 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e-----~~~-~~i~~~~~G~~~~~i~v~ 75 (283)
+.|++.+.+++++|.|+|++|||.|+. .|++++++++.+...+ ++++.+ |+. ..++++++|..+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~l~~~~dEE~g~~--~G~~~~~~~~~~~~~~--~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~ 200 (400)
T TIGR01880 125 RNLKASGFKFKRTIHISFVPDEEIGGH--DGMEKFAKTDEFKALN--LGFALDEGLASPDDVYRVFYAERVPWWVVVTAP 200 (400)
T ss_pred HHHHHcCCCCCceEEEEEeCCcccCcH--hHHHHHHHhhhccCCc--eEEEEcCCCcccccccceeEEeeEEEEEEEEEe
Confidence 467777778899999999999999762 4999999876554433 444443 333 367889999999999999
Q ss_pred ecCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCC
Q 023343 76 GKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTP 155 (283)
Q Consensus 76 G~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p 155 (283)
|+++|+|.|. +.||+..|++++..|+++....+..........+....+++++.|+ +|.+.|+||++|++.+|+|++|
T Consensus 201 G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvIP~~a~~~~diR~~p 278 (400)
T TIGR01880 201 GNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAIGDVTSVNLTKLK-GGVQSNVIPSEAEAGFDIRLAP 278 (400)
T ss_pred cCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcCccccccccceeecceec-cCCcCCcCCCccEEEEEEeeCC
Confidence 9999999865 4699999999999887642110000000001111123689999999 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCC-ccccCCCCHHHHHHHHHHHHHhCCC
Q 023343 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATN-GVACNLDSRGFHVLCKATEEVVGHV 234 (283)
Q Consensus 156 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~d~~~~~~l~~~~~~~~g~~ 234 (283)
+++.+++.++|++.++... .+.+++++.....| +...+.++++++++.+++++..+..
T Consensus 279 ~~~~~~~~~~i~~~i~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~~~~~ 337 (400)
T TIGR01880 279 SVDFEEMENRLDEWCADAG---------------------EGVTYEFSQHSGKPLVTPHDDSNPWWVAFKDAVKEMGCTF 337 (400)
T ss_pred CCCHHHHHHHHHHHHhccC---------------------CceEEEEeecCCCCCCCCCCCCCHHHHHHHHHHHHcCCee
Confidence 9999999999988887521 12344444333333 3345578999999999999864344
Q ss_pred CceeecCCchhhHhhhhCCCcEEEEcCCCC--ccCCCCCcccchhhhhhh
Q 023343 235 NPYSITGTLPLIRELQDEGFDVQTAGYGLM--ATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 235 ~~~~~~gg~~da~~~~~~g~p~v~~g~g~~--~~~H~~nE~i~~~~l~~~ 282 (283)
.+..+.|+ +|++++...|+|++.|||+.. ..+|++||+|++++|.++
T Consensus 338 ~~~~~~g~-tDa~~~~~~gip~v~fgp~~~~~~~aH~~dE~i~i~~l~~~ 386 (400)
T TIGR01880 338 KPEILPGS-TDSRYIRAAGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRG 386 (400)
T ss_pred cceeecCc-chHHHHHhCCCCeEEECCccCCcccccCCCCceEHHHHHHH
Confidence 45566777 599999989999999999853 369999999999999875
No 24
>PRK05111 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2e-34 Score=257.63 Aligned_cols=244 Identities=23% Similarity=0.256 Sum_probs=192.2
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hs 81 (283)
+.|++. .++++|.|+|++|||.|+ .|++++++++.+ ++|++++.+|+...++++++|.++++|+++|+++|+
T Consensus 124 ~~l~~~--~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~~---~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~H~ 195 (383)
T PRK05111 124 RDIDLT--KLKKPLYILATADEETSM---AGARAFAEATAI---RPDCAIIGEPTSLKPVRAHKGHMSEAIRITGQSGHS 195 (383)
T ss_pred HHHhhc--CCCCCeEEEEEeccccCc---ccHHHHHhcCCC---CCCEEEEcCCCCCceeecccceEEEEEEEEeechhc
Confidence 344443 467899999999999987 799999987643 468899999998888899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccccc-CCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHH
Q 023343 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (283)
Q Consensus 82 s~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~ 160 (283)
|.|+.|.||+..+++++.+|+.+... +.... ....|. ...+++++.|+ +|...|+||++|++.+|+|++|+++.+
T Consensus 196 ~~p~~g~nai~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~t~~i~~i~-gg~~~NvVP~~~~~~~diR~~p~~~~~ 271 (383)
T PRK05111 196 SDPALGVNAIELMHDVIGELLQLRDE-LQERY--HNPAFTVPYPTLNLGHIH-GGDAPNRICGCCELHFDIRPLPGMTLE 271 (383)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHHH-HhccC--CCccCCCCCCceeEeeee-cCCcCcccCCceEEEEEEecCCCCCHH
Confidence 99999999999999999998775311 10000 001111 13588999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEc-CCCCccccCCCCHHHHHHHHHHHHHhCCCCceee
Q 023343 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFD-EATNGVACNLDSRGFHVLCKATEEVVGHVNPYSI 239 (283)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~ 239 (283)
++.+.+++.+++..+. ++++++++.. ..+|++..+.++++++.+.+++ |..+.. .
T Consensus 272 ~v~~~i~~~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----g~~~~~-~ 327 (383)
T PRK05111 272 DLRGLLREALAPVSER-------------------WPGRITVAPLHPPIPGYECPADHQLVRVVEKLL----GHKAEV-V 327 (383)
T ss_pred HHHHHHHHHHHHHHhh-------------------CCCeEEEeccccCCCCcCCCCCCHHHHHHHHHh----CCCCce-e
Confidence 9999999999876432 2345565543 3567777778899988876543 544322 2
Q ss_pred cCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 240 TGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 240 ~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.++ +|++++...|+|++.||||....+|++||++++++|.++
T Consensus 328 ~~~-~Da~~~~~~g~p~v~~G~g~~~~~H~~~E~v~~~~l~~~ 369 (383)
T PRK05111 328 NYC-TEAPFIQQLGCPTLVLGPGSIEQAHQPDEYLELSFIKPT 369 (383)
T ss_pred eee-ccHHHHHhcCCCEEEECCCchHhCcCCCCcccHHHHHHH
Confidence 355 489999888999999999965689999999999999764
No 25
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=100.00 E-value=1.6e-34 Score=259.85 Aligned_cols=239 Identities=21% Similarity=0.205 Sum_probs=191.9
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC--CCceeccCCceeEEEEEeecCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~--~~i~~~~~G~~~~~i~v~G~~~ 79 (283)
++|++.+.+++++|.|+|++|||.|+ .|++.++++.. . ++|++++.||+. +.+.++++|..+++|+++|+++
T Consensus 149 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~-~--~~d~~i~~ep~~~~~~v~~~~~G~~~~~v~v~G~~~ 222 (410)
T PRK06133 149 KILQQLGFKDYGTLTVLFNPDEETGS---PGSRELIAELA-A--QHDVVFSCEPGRAKDALTLATSGIATALLEVKGKAS 222 (410)
T ss_pred HHHHHcCCCCCCCEEEEEECCcccCC---ccHHHHHHHHh-c--cCCEEEEeCCCCCCCCEEEeccceEEEEEEEEeecc
Confidence 45677777788999999999999987 69999998743 2 468999999887 4688999999999999999999
Q ss_pred CcC-CCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCC
Q 023343 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (283)
Q Consensus 80 Hss-~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~ 158 (283)
|+| .|+.|.||+..+++++..|+++.. .. ...+++++.|+ +|.+.|+||++|++.+|+|+.|.++
T Consensus 223 Hsg~~p~~g~nAi~~~~~~i~~l~~~~~-~~------------~~~t~~~~~i~-gG~~~nvIP~~~~~~~diR~~~~~~ 288 (410)
T PRK06133 223 HAGAAPELGRNALYELAHQLLQLRDLGD-PA------------KGTTLNWTVAK-AGTNRNVIPASASAQADVRYLDPAE 288 (410)
T ss_pred ccCCCcccCcCHHHHHHHHHHHHHhccC-CC------------CCeEEEeeEEE-CCCCCceeCCccEEEEEEEECCHHH
Confidence 985 799999999999999999887531 11 12578999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCC-HHHHHHHHHHHHHhCCC-Cc
Q 023343 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDS-RGFHVLCKATEEVVGHV-NP 236 (283)
Q Consensus 159 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~-~~~~~l~~~~~~~~g~~-~~ 236 (283)
.+++.++|++.++.. ...+.+++++....+|++..+++. ++++++.++.++. |.+ .+
T Consensus 289 ~~~v~~~i~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 347 (410)
T PRK06133 289 FDRLEADLQEKVKNK--------------------LVPDTEVTLRFERGRPPLEANAASRALAEHAQGIYGEL-GRRLEP 347 (410)
T ss_pred HHHHHHHHHHHHhcc--------------------CCCCeEEEEEeccccCCcccCcchHHHHHHHHHHHHHc-CCCccc
Confidence 888888888888751 111356666666678887766654 6888888777764 433 22
Q ss_pred --eeecCCchhhHhhhhCCCcEEEEcCCC-CccCCCCCcccchhhhhhh
Q 023343 237 --YSITGTLPLIRELQDEGFDVQTAGYGL-MATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 237 --~~~~gg~~da~~~~~~g~p~v~~g~g~-~~~~H~~nE~i~~~~l~~~ 282 (283)
....|+ +|++++...|+|++++|+|. ...+|++||||+++++.++
T Consensus 348 ~~~~~~g~-tDa~~~~~~gip~v~~g~G~~~~~aH~~nE~i~i~~~~~~ 395 (410)
T PRK06133 348 IDMGTGGG-TDAAFAAGSGKAAVLEGFGLVGFGAHSNDEYIELNSIVPR 395 (410)
T ss_pred cccCCCCC-chHHHHHhcCCCceEecccCCCCCCCCCCcEEEcccHHHH
Confidence 345666 59999999999999966655 3579999999999998764
No 26
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=4.9e-34 Score=252.30 Aligned_cols=232 Identities=19% Similarity=0.223 Sum_probs=185.2
Q ss_pred CCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCcCCCCCCCC
Q 023343 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAIN 89 (283)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hss~p~~g~n 89 (283)
+++++|.|+|++|||.++.. .|+..+++... ...++|+++++||+...++++++|..+++|+++|+++|||.|+.|.|
T Consensus 112 ~~~~~i~~~~~~~EE~~~~~-~G~~~~~~~~~-~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~n 189 (352)
T PRK13007 112 EPAHDLTLVFYDCEEVEAEA-NGLGRLAREHP-EWLAGDFAILLEPTDGVIEAGCQGTLRVTVTFHGRRAHSARSWLGEN 189 (352)
T ss_pred ccCCCeEEEEEecccccCCc-ccHHHHHHhcc-cccCCCEEEEecCCCCceEeeccceEEEEEEEEecccccCCCccCcC
Confidence 57889999999999986521 38888887532 23467899999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHH
Q 023343 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (283)
Q Consensus 90 ai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~ 169 (283)
|+..+++++.++++......... +.....+++++.|+ +|...|+||++|++.+|+|++|+++.+++.++|++.
T Consensus 190 Ai~~~~~~i~~l~~~~~~~~~~~------~~~~~~~~~~~~i~-gG~~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~ 262 (352)
T PRK13007 190 AIHKAAPVLARLAAYEPREVVVD------GLTYREGLNAVRIS-GGVAGNVIPDECVVNVNYRFAPDRSLEEALAHVREV 262 (352)
T ss_pred HHHHHHHHHHHHHHhcccccccC------CCCccceeEeEeEe-cCCcCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 99999999999987543221110 11112478899999 999999999999999999999999999988888877
Q ss_pred HHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCchhhHhh
Q 023343 170 VDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIREL 249 (283)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~~da~~~ 249 (283)
+... + ++++...++++..+.++++++.+.+++ |..+. ...|+ +|+++|
T Consensus 263 ~~~~-----------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~-~~~g~-td~~~~ 310 (352)
T PRK13007 263 FDGF-----------------------A---EVEVTDLAPGARPGLDHPAAAALVAAV----GGEVR-AKYGW-TDVARF 310 (352)
T ss_pred hccc-----------------------c---EEEeecccCCCCCCCCCHHHHHHHHHh----CCCCc-ccccc-chHHHH
Confidence 6431 1 344444566777778999999888763 43322 24566 488888
Q ss_pred hhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 250 QDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 250 ~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
...|+|++.||||..+.+|++|||+++++|.++
T Consensus 311 ~~~Gip~v~~Gpg~~~~~H~~~E~v~i~~l~~~ 343 (352)
T PRK13007 311 SALGIPAVNFGPGDPALAHQRDEHVPVAQITAC 343 (352)
T ss_pred HhCCCCEEEeCCCchhhccCCCCceEHHHHHHH
Confidence 888999999999977789999999999999875
No 27
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=100.00 E-value=2.9e-34 Score=254.56 Aligned_cols=236 Identities=15% Similarity=0.214 Sum_probs=188.8
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC--CCceeccCCceeEEEEEeecCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~--~~i~~~~~G~~~~~i~v~G~~~ 79 (283)
+.|++.+ .++++|.|+|++|||.|+ .|++.+++.. +++++.++.+++. +.++++.+|..+++|+++|+++
T Consensus 113 ~~l~~~~-~~~~~v~~~~~~~EE~g~---~G~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~~~~i~~~G~~~ 184 (361)
T TIGR01883 113 DVLSTEE-TPHGTIEFIFTVKEELGL---IGMRLFDESK----ITAAYGYCLDAPGEVGNIQLAAPTQVKVDATIAGKDA 184 (361)
T ss_pred HHHHhcC-CCCCCEEEEEEcccccCc---hhHhHhChhh----cCcceeEEEeCCCCcceEEecCCceEEEEEEEEeeec
Confidence 3455554 577899999999999987 7999887643 3457777777644 5688899999999999999999
Q ss_pred CcC-CCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCC
Q 023343 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (283)
Q Consensus 80 Hss-~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~ 158 (283)
|+| .|+.|+||+..+++++.+|+.. .+++ ..+++++.++ +|...|+||++|++.+++|+.|..+
T Consensus 185 Ha~~~p~~g~nAi~~~~~~i~~l~~~---~~~~-----------~~~~~i~~i~-gG~~~nvVP~~~~~~~diR~~~~~~ 249 (361)
T TIGR01883 185 HAGLVPEDGISAISVARMAIHAMRLG---RIDE-----------ETTANIGSFS-GGVNTNIVQDEQLIVAEARSLSFRK 249 (361)
T ss_pred CCCCCcccCcCHHHHHHHHHHhcccc---CCCC-----------ccccccceee-cCCccCccCCceEEEEEEecCCHHH
Confidence 985 7999999999999999988542 1111 2467899998 9999999999999999999999777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCc-e
Q 023343 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-Y 237 (283)
Q Consensus 159 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~-~ 237 (283)
.+++.+++++.++..... ++.++++++...+|++.+++|+++++++++++++ .|.++. .
T Consensus 250 ~~~~~~~i~~~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~-~g~~~~~~ 309 (361)
T TIGR01883 250 AEAQVQTMRERFEQAAEK-------------------YGATLEEETRLIYEGFKIHPQHPLMNIFKKAAKK-IGLKTSEI 309 (361)
T ss_pred HHHHHHHHHHHHHHHHHH-------------------cCCEEEEEEEeccccccCCCCCHHHHHHHHHHHH-cCCCcEEE
Confidence 777777777777765322 1345566655567888888899999999999987 465443 3
Q ss_pred eecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 238 SITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 238 ~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
...|+ +|++++...|+|++.||||. ..+|++||+++++++.++
T Consensus 310 ~~~g~-tD~~~~~~~giP~v~~G~g~-~~~Hs~~E~v~i~~~~~~ 352 (361)
T TIGR01883 310 FSGGG-SDANVLNEKGVPTVNLSAGY-VHAHTEKETISIEQLVKL 352 (361)
T ss_pred ecCcc-cHHHHHhhCCCceEEECCCc-ccCcCcceeEEHHHHHHH
Confidence 34556 59999988899999999996 689999999999999865
No 28
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=2e-33 Score=249.84 Aligned_cols=234 Identities=13% Similarity=0.084 Sum_probs=178.9
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC--CCceeccCCceeEEEEEeecCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~--~~i~~~~~G~~~~~i~v~G~~~ 79 (283)
++|++.+..++.+|.|+|++|||+|+ .|++.+++++.. ++|++++.||+. ..++++++|..+++|+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~g~~~~~~~~~~---~~d~~iv~ep~~~~~~v~~~~~G~~~~~v~~~G~~a 198 (376)
T PRK07473 125 RQLARAGITTPLPITVLFTPDEEVGT---PSTRDLIEAEAA---RNKYVLVPEPGRPDNGVVTGRYAIARFNLEATGRPS 198 (376)
T ss_pred HHHHHcCCCCCCCEEEEEeCCcccCC---ccHHHHHHHhhc---cCCEEEEeCCCCCCCCEEEECeeeEEEEEEEEeEcC
Confidence 56777777778899999999999988 799999986532 468999999985 4789999999999999999999
Q ss_pred CcC-CCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCC
Q 023343 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (283)
Q Consensus 80 Hss-~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~ 158 (283)
|+| .|+.|.||+..|++++.+|+++... ..+++++.|+ +|.+.|+||++|++.++.|....
T Consensus 199 Hag~~p~~g~nAi~~~~~~i~~l~~~~~~---------------~~~~~vg~i~-gg~~~n~VP~~~~~~~d~r~~~~-- 260 (376)
T PRK07473 199 HAGATLSEGRSAIREMARQILAIDAMTTE---------------DCTFSVGIVH-GGQWVNCVATTCTGEALSMAKRQ-- 260 (376)
T ss_pred CCCCCcccCcCHHHHHHHHHHHHHHhcCC---------------CceEeEeeEE-cCCCCcCCCCceEEEEEEEeCCH--
Confidence 987 6999999999999999999875311 2478999999 88899999999999999998763
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCC-HHHHHHHHHHHHHhCCCC-c
Q 023343 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDS-RGFHVLCKATEEVVGHVN-P 236 (283)
Q Consensus 159 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~-~~~~~l~~~~~~~~g~~~-~ 236 (283)
+++.+.+.+..+.. .. ..+..++++.....|++..+.++ +++++++++.++ .|.++ .
T Consensus 261 -~~~~~~~~~i~~~~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~~~~~ 319 (376)
T PRK07473 261 -ADLDRGVARMLALS-GT------------------EDDVTFTVTRGVTRPVWEPDAGTMALYEKARAIAGQ-LGLSLPH 319 (376)
T ss_pred -hHHHHHHHHHHHhh-Cc------------------CCCeEEEEEccccCCCCCCChhHHHHHHHHHHHHHH-cCCCCcc
Confidence 33333333322221 10 11244555443456776655554 688888776654 56543 3
Q ss_pred eeecCCchhhHhhhhCCCcEEE-EcCCCCccCCCCCcccchhhhhhh
Q 023343 237 YSITGTLPLIRELQDEGFDVQT-AGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 237 ~~~~gg~~da~~~~~~g~p~v~-~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
..+.|+ +|+++|...|+|++. ||||. .++|++|||+++++|.++
T Consensus 320 ~~~~g~-tDa~~~~~~giP~v~g~Gpg~-~~~H~~dE~v~i~~l~~~ 364 (376)
T PRK07473 320 GSAGGG-SDGNFTGAMGIPTLDGLGVRG-ADYHTLNEHIEVDSLAER 364 (376)
T ss_pred ccCccc-cHhhhHHhcCCCEEEeccCCC-CCCCCCCceEecccHHHH
Confidence 445566 599999988999997 99984 679999999999999865
No 29
>PRK09104 hypothetical protein; Validated
Probab=100.00 E-value=5.7e-33 Score=253.72 Aligned_cols=256 Identities=19% Similarity=0.159 Sum_probs=191.3
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC-----CceeccCCceeEEEEEee
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~-----~i~~~~~G~~~~~i~v~G 76 (283)
+.|++.+.+++++|.|+|++|||.|+ .|...++.+.. ...++|++|+.|++.. .+++++||.++++|+++|
T Consensus 141 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~~~i~~~~kG~~~~~l~v~g 216 (464)
T PRK09104 141 RAWKAVTGSLPVRVTILFEGEEESGS---PSLVPFLEANA-EELKADVALVCDTGMWDRETPAITTSLRGLVGEEVTITA 216 (464)
T ss_pred HHHHHhcCCCCCcEEEEEECccccCC---ccHHHHHHhhH-HhcCCCEEEEeCCCCCCCCCeEEEeecCCeEEEEEEEEe
Confidence 45677666788899999999999998 68888776532 2245789999997642 477899999999999999
Q ss_pred --cCCCcCC-CCCCCCHHHHHHHHHHHHHhhhcC--------CCCCCC-------cc---ccccc---------------
Q 023343 77 --KLFHSGL-PHKAINPLELAMEALKVIQTRFYK--------DFPPHP-------KE---QVYGF--------------- 120 (283)
Q Consensus 77 --~~~Hss~-p~~g~nai~~~~~~l~~l~~~~~~--------~~~~~~-------~~---~~~~~--------------- 120 (283)
+++|||. |+.|.||+..|++++.+|++.... .+.+.. +. ....|
T Consensus 217 ~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (464)
T PRK09104 217 ADRDLHSGLFGGAAANPIRVLTRILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGR 296 (464)
T ss_pred CCCCccccccCCccCCHHHHHHHHHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccH
Confidence 6899996 688999999999999998763110 000000 00 00000
Q ss_pred ------cCCCcccceEEecCCC----ccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccc
Q 023343 121 ------ETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYV 190 (283)
Q Consensus 121 ------~~~~~~~~~~i~~~g~----~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 190 (283)
....+++++.|+ +|. ..|+||++|++.+|+|++|+++.+++.+.|++.+.+...
T Consensus 297 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~~--------------- 360 (464)
T PRK09104 297 SVLEQIWSRPTCEINGIW-GGYTGEGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRARLP--------------- 360 (464)
T ss_pred HHHHHHhhCCeEEEeccc-cCCCCCCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------------
Confidence 012467888888 663 579999999999999999999999999999988875311
Q ss_pred cCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCch-h-hHhhhhCCCcEEEEcCCC-CccC
Q 023343 191 LPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLP-L-IRELQDEGFDVQTAGYGL-MATY 267 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~~-d-a~~~~~~g~p~v~~g~g~-~~~~ 267 (283)
.+.++++......|++.+++++++++.+.+++++++|.++.....||++ + +.|....|+|+++||||. ...+
T Consensus 361 -----~~~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gip~v~~g~G~~~~~a 435 (464)
T PRK09104 361 -----ADCSVEFHDHGGSPAIALPYDSPALAAAKAALSDEWGKPAVLIGSGGSIPIVGDFKRILGMDSLLVGFGLDDDRI 435 (464)
T ss_pred -----CCeEEEEEecCCCCceECCCCCHHHHHHHHHHHHHhCCCceecCCCCcHHHHHHHHHHhCCCEEEecCCCCCCCC
Confidence 1234555544567888899999999999999999998765443344432 3 444444699999999985 4579
Q ss_pred CCCCcccchhhhhhh
Q 023343 268 HADNEYCLLSDIRLT 282 (283)
Q Consensus 268 H~~nE~i~~~~l~~~ 282 (283)
|++||||++++|.++
T Consensus 436 H~~nE~i~i~~l~~~ 450 (464)
T PRK09104 436 HSPNEKYDLESFHKG 450 (464)
T ss_pred cCCCCCcCHHHHHHH
Confidence 999999999999875
No 30
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=100.00 E-value=3e-33 Score=245.71 Aligned_cols=221 Identities=18% Similarity=0.166 Sum_probs=177.5
Q ss_pred CceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC-CceeccCCceeEEEEEeecCCCcCCCCCCCC
Q 023343 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHKAIN 89 (283)
Q Consensus 11 ~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~-~i~~~~~G~~~~~i~v~G~~~Hss~p~~g~n 89 (283)
...+|.|+|++|||.|+ .|+++++++.. .+++++.||+.. .+.++++|..+++++++|+++|+|.|. |
T Consensus 100 ~~~~i~~~~~~dEE~g~---~G~~~~~~~~~-----~~~~ii~ept~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~---~ 168 (336)
T TIGR01902 100 KGIKVIVSGLVDEESSS---KGAREVIDKNY-----PFYVIVGEPSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG---N 168 (336)
T ss_pred CCCcEEEEEEeCcccCC---ccHHHHHhhcC-----CCEEEEecCCCCcceeeeeeeEEEEEEEEEecCcccCCCh---h
Confidence 34689999999999987 79999998743 348899999874 688999999999999999999999875 5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHH
Q 023343 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (283)
Q Consensus 90 ai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~ 169 (283)
|+..|.++++.|.+.+..... + ...+++++.++ +|.+.|+||++|++.+|+|++|+++.+++.+++++.
T Consensus 169 ai~~~~~~~~~l~~~~~~~~~---------~-~~~~~~~~~i~-gg~~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~~ 237 (336)
T TIGR01902 169 AAELLIDYSKKIIEVYKQPEN---------Y-DKPSIVPTIIR-FGESYNDTPAKLELHFDLRYPPNNKPEEAIKEITDK 237 (336)
T ss_pred HHHHHHHHHHHHHHHhccccC---------C-CCCcceeEEEE-ccCCCcCCCceEEEEEEEeeCCCCCHHHHHHHHHhc
Confidence 899999999998743222111 1 12467888888 899999999999999999999999988877766651
Q ss_pred HHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCchhhHhh
Q 023343 170 VDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIREL 249 (283)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~~da~~~ 249 (283)
..++++....+||+.+++|+++++.++++++++..++......|+ +|+++|
T Consensus 238 ----------------------------~~~~~~~~~~~~p~~~~~~~~lv~~~~~a~~~~~~~~~~~~~~g~-tD~~~~ 288 (336)
T TIGR01902 238 ----------------------------FPICLEIVDETPPYKVSRNNPLVRAFVRAIRKQGMKPRLKKKTGT-SDMNIL 288 (336)
T ss_pred ----------------------------cCceEEEEeccCceecCCCCHHHHHHHHHHHHcCCCeEEeecccc-Ccccee
Confidence 012344445678888889999999999999987534343444566 599999
Q ss_pred hhC-CCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 250 QDE-GFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 250 ~~~-g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.+. |+|++.||||....+|++|||+++++|.++
T Consensus 289 ~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~ 322 (336)
T TIGR01902 289 APIWTVPMVAYGPGDSTLDHTPQEKISLAEYLIG 322 (336)
T ss_pred ccccCCCeEEECCCCcccCCCCcceeEHHHHHHH
Confidence 885 999999999976679999999999999875
No 31
>PRK07906 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=253.23 Aligned_cols=248 Identities=18% Similarity=0.207 Sum_probs=182.6
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC-----------CceeccCCceeE
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----------QPCIGTGGMIPW 70 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~-----------~i~~~~~G~~~~ 70 (283)
++|++.+..++++|.|+|++|||+++. .|+++++++.. ..++...+++.|++.. .++++++|..++
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~dEE~g~~--~g~~~l~~~~~-~~~~~~~~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~ 194 (426)
T PRK07906 118 RHLARTGRRPPRDLVFAFVADEEAGGT--YGAHWLVDNHP-ELFEGVTEAISEVGGFSLTVPGRDRLYLIETAEKGLAWM 194 (426)
T ss_pred HHHHHcCCCCCccEEEEEecCcccchh--hhHHHHHHHHH-HhccchheEEECCCceeeccCCCccEEEEEeccceEEEE
Confidence 567777888999999999999999762 59999987642 1111123445565432 367899999999
Q ss_pred EEEEeecCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCC--------------------CCCCCc----------cccccc
Q 023343 71 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD--------------------FPPHPK----------EQVYGF 120 (283)
Q Consensus 71 ~i~v~G~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~--------------------~~~~~~----------~~~~~~ 120 (283)
+|+++|+++|+|.|+. .||+..|++++++|.+..... +.+... .....+
T Consensus 195 ~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 273 (426)
T PRK07906 195 RLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGA 273 (426)
T ss_pred EEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhh
Confidence 9999999999999875 899999999999997542110 000000 000000
Q ss_pred cCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeE
Q 023343 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSL 200 (283)
Q Consensus 121 ~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (283)
....+++++.|+ +|.+.|+||++|++.+|+|++|+++ +++.+.+++.+. .++
T Consensus 274 ~~~~t~~~~~i~-gG~~~NviP~~~~~~~d~R~~p~~~-~~i~~~i~~~~~--------------------------~~v 325 (426)
T PRK07906 274 TLRNTANPTMLK-AGYKVNVIPGTAEAVVDGRFLPGRE-EEFLATVDELLG--------------------------PDV 325 (426)
T ss_pred hhcccccceeEe-ccCccccCCCceEEEEEEeECCCCc-HHHHHHHHHHhC--------------------------CCe
Confidence 013588999999 8889999999999999999999875 444444433321 134
Q ss_pred EEEEcCCCCccccCCCCHHHHHHHHHHHHHhCC--CCceeecCCchhhHhhhhCCCcEEEEcCCC-------CccCCCCC
Q 023343 201 TLTFDEATNGVACNLDSRGFHVLCKATEEVVGH--VNPYSITGTLPLIRELQDEGFDVQTAGYGL-------MATYHADN 271 (283)
Q Consensus 201 ~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~--~~~~~~~gg~~da~~~~~~g~p~v~~g~g~-------~~~~H~~n 271 (283)
++++...+|++.++.|+++++.++++++++++. +.++...||| |+++|...|+|++.|||+. ..++|++|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~~~~~~~~~~~~ggt-Da~~~~~~g~p~~~~gp~~~~~~~~~~~~~H~~~ 404 (426)
T PRK07906 326 EREWVHRDPALETPFDGPLVDAMNAALLAEDPGARVVPYMLSGGT-DAKAFSRLGIRCYGFAPLRLPPDLDFAALFHGVD 404 (426)
T ss_pred EEEEecCCCCCCCCCCcHHHHHHHHHHHHHCCCCeEeeeeecccC-cHHHHHhcCCceEEEeccccCccccccccCcCCC
Confidence 555555678888889999999999999998643 3445566774 9999999999999999974 25799999
Q ss_pred cccchhhhhhh
Q 023343 272 EYCLLSDIRLT 282 (283)
Q Consensus 272 E~i~~~~l~~~ 282 (283)
||+++++|.++
T Consensus 405 E~v~~~~l~~~ 415 (426)
T PRK07906 405 ERVPVDALRFG 415 (426)
T ss_pred CceeHHHHHHH
Confidence 99999999875
No 32
>PRK06446 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=253.93 Aligned_cols=250 Identities=18% Similarity=0.175 Sum_probs=187.6
Q ss_pred ccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC------CceeccCCceeEEEEEee
Q 023343 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK------QPCIGTGGMIPWKLHVTG 76 (283)
Q Consensus 3 ~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~------~i~~~~~G~~~~~i~v~G 76 (283)
.|++.+ .++++|.|+|++|||.|+ .|+..++++.. +.+++|++++ ||+.. .++++++|.++++|+++|
T Consensus 117 ~l~~~~-~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~vi~-E~~~~~~~~~~~i~~~~kG~~~~~l~v~G 190 (436)
T PRK06446 117 HLIDKH-KLNVNVKFLYEGEEEIGS---PNLEDFIEKNK-NKLKADSVIM-EGAGLDPKGRPQIVLGVKGLLYVELVLRT 190 (436)
T ss_pred HHHHcC-CCCCCEEEEEEcccccCC---HhHHHHHHHHH-HHhCCCEEEE-CCCCccCCCCeEEEEecCeEEEEEEEEEe
Confidence 344443 578899999999999998 78888887631 2245678764 77654 678999999999999999
Q ss_pred --cCCCcCCCCCCCCHHHHHHHHHHHHHhhhc--------CCCCCCC---------------------------ccc---
Q 023343 77 --KLFHSGLPHKAINPLELAMEALKVIQTRFY--------KDFPPHP---------------------------KEQ--- 116 (283)
Q Consensus 77 --~~~Hss~p~~g~nai~~~~~~l~~l~~~~~--------~~~~~~~---------------------------~~~--- 116 (283)
+++|||.|+.|.||+..|++++++|.+... +.+.+.. ...
T Consensus 191 ~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 270 (436)
T PRK06446 191 GTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRKALGFKELKYSDREK 270 (436)
T ss_pred CCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCccc
Confidence 999999999999999999999999975310 0000000 000
Q ss_pred -cccccCCCcccceEEecCC----CccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCccccc
Q 023343 117 -VYGFETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (283)
Q Consensus 117 -~~~~~~~~~~~~~~i~~~g----~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 191 (283)
........++|++.|. +| ...|+||++|++.+|+|++|+++.+++.+.+++.+.+..
T Consensus 271 ~~~~~~~~~t~nv~~i~-~g~~~~~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~l~~~~~~~~----------------- 332 (436)
T PRK06446 271 IAEALLTEPTCNIDGFY-SGYTGKGSKTIVPSRAFAKLDFRLVPNQDPYKIFELLKKHLQKVG----------------- 332 (436)
T ss_pred HHHHHHhCCcEEEeeee-ccccCCCCCcEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHHcC-----------------
Confidence 0001123578888887 54 467999999999999999999999999999999987531
Q ss_pred CCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCce-eecCCchhhHhhhh-CCCcEEE--EcCCC-Ccc
Q 023343 192 PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPY-SITGTLPLIRELQD-EGFDVQT--AGYGL-MAT 266 (283)
Q Consensus 192 ~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~-~~~gg~~da~~~~~-~g~p~v~--~g~g~-~~~ 266 (283)
..+++++....+++.++.++|+++++.+++++++|..+.. ...+|++|+++|.+ .|+|+++ +|+|+ ...
T Consensus 333 ------~~~~~~~~~~~~p~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~~g~~d~~~~~~~~gip~v~~~~g~g~~~~~ 406 (436)
T PRK06446 333 ------FNGEIIVHGFEYPVRTSVNSKVVKAMIESAKRVYGTEPVVIPNSAGTQPMGLFVYKLGIRDIVSAIGVGGYYSN 406 (436)
T ss_pred ------CCeEEEEcCCcceeecCCCCHHHHHHHHHHHHHhCCCCceecCCCCcchHHHHHHHhCCCcceeecccCCCCcC
Confidence 2345555556788888899999999999999998875443 23444457666655 7999765 66654 468
Q ss_pred CCCCCcccchhhhhhh
Q 023343 267 YHADNEYCLLSDIRLT 282 (283)
Q Consensus 267 ~H~~nE~i~~~~l~~~ 282 (283)
+|++||||++++|.++
T Consensus 407 ~H~~dE~i~i~~l~~~ 422 (436)
T PRK06446 407 AHAPNENIRIDDYYKA 422 (436)
T ss_pred CcCCCCCcCHHHHHHH
Confidence 9999999999999875
No 33
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=5.1e-33 Score=250.76 Aligned_cols=242 Identities=18% Similarity=0.127 Sum_probs=187.7
Q ss_pred cccccccCCCceeEEEEEEeccccC----CCCCcCHHHHHHcccc---------------------ccCCCCceEEecCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENS----AITGVGVDALVKDGLL---------------------NKLKGGPLYWIDTA 56 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g----~~~~~G~~~l~~~~~~---------------------~~~~~d~~~~~e~~ 56 (283)
+.|++.+..++++|.|++++|||.+ +. .|+++++.+... .++.+|.+++.||+
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~--~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~ 183 (412)
T PRK12892 106 RALNEHGIATRHPLDVVAWCDEEGSRFTPGF--LGSRAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADRA 183 (412)
T ss_pred HHHHHcCCCCCCCeEEEEecCcccccccCcc--ccHHHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhccccccc
Confidence 5678888889999999999999984 31 599999853210 12345566666654
Q ss_pred C---------------------CCceeccCCceeEEEEEeecCCCcCC-CC-CCCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 023343 57 D---------------------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (283)
Q Consensus 57 ~---------------------~~i~~~~~G~~~~~i~v~G~~~Hss~-p~-~g~nai~~~~~~l~~l~~~~~~~~~~~~ 113 (283)
. ..++++++|..+++|+++|+++|+|. |+ .|.||+..+++++.+|+++.....
T Consensus 184 ~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~~~---- 259 (412)
T PRK12892 184 RPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPRVC---- 259 (412)
T ss_pred CccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcC----
Confidence 2 23678999999999999999999975 64 689999999999999987542221
Q ss_pred ccccccccCCCcccceEEecCC-CccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccC
Q 023343 114 KEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (283)
Q Consensus 114 ~~~~~~~~~~~~~~~~~i~~~g-~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (283)
.+.+++++.|+ +| .+.|+||++|++.+|+|++|+++.+++.++|++.++.....
T Consensus 260 --------~~~~~~vg~i~-gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~---------------- 314 (412)
T PRK12892 260 --------GPAVVTVGRVA-LDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEALCREIARR---------------- 314 (412)
T ss_pred --------CCcEEEEEEEE-ecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 13588999999 65 79999999999999999999999898999988888875422
Q ss_pred CCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-ceeecCCchhhHhhhhCCCcE-EEEcCCCCccCCCC
Q 023343 193 DENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQDEGFDV-QTAGYGLMATYHAD 270 (283)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~~~gg~~da~~~~~~g~p~-v~~g~g~~~~~H~~ 270 (283)
++++++++....+|++. .|+++++++++++++ .|.++ .....|+ +|+++|.+. +|+ +.|||+....+|++
T Consensus 315 ---~~~~~e~~~~~~~~~~~--~d~~lv~~~~~a~~~-~g~~~~~~~~~g~-tDa~~~~~~-ip~~~~~gp~~~~~~H~~ 386 (412)
T PRK12892 315 ---RGCRVSVDRIAEYAPAP--CDAALVDALRAAAEA-AGGPYLEMPSGAG-HDAQNMARI-APSAMLFVPSKGGISHNP 386 (412)
T ss_pred ---hCCeEEEEEEecCCCcC--CCHHHHHHHHHHHHH-cCCCccccCcchH-HHHHHHHhH-CCEEEEEeccCCCCCCCC
Confidence 13556666555677764 678999999999998 67543 3445566 589999876 785 67899876679999
Q ss_pred Ccccchhhhhhh
Q 023343 271 NEYCLLSDIRLT 282 (283)
Q Consensus 271 nE~i~~~~l~~~ 282 (283)
||++++++|.++
T Consensus 387 ~E~v~i~~l~~~ 398 (412)
T PRK12892 387 AEDTSPADLAQG 398 (412)
T ss_pred CCCCCHHHHHHH
Confidence 999999999865
No 34
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=100.00 E-value=5.3e-33 Score=249.48 Aligned_cols=244 Identities=15% Similarity=0.072 Sum_probs=185.8
Q ss_pred CcccccccCCCceeEEEEEEecccc-----CCCCCcCHHHHHHcccc-------c--c---------CCCCceEEecCCC
Q 023343 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALVKDGLL-------N--K---------LKGGPLYWIDTAD 57 (283)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~-----g~~~~~G~~~l~~~~~~-------~--~---------~~~d~~~~~e~~~ 57 (283)
++.|++.+.+++++|.|++++|||. ++ .|+++++..... + + ..+++++..++..
T Consensus 98 ~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~---~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 174 (401)
T TIGR01879 98 VDALKEAYVVPLHPIEVVAFTEEEGSRFPYGM---WGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPR 174 (401)
T ss_pred HHHHHHcCCCCCCCeEEEEEeCCcCcCccccc---ccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCccccccccc
Confidence 3578888989999999999999997 44 688888753210 0 0 1223333222221
Q ss_pred -----------------------CCceeccCCceeEEEEEeecCCCcCC-CC-CCCCHHHHHHHHHHHHHhhhcCCCCCC
Q 023343 58 -----------------------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPH 112 (283)
Q Consensus 58 -----------------------~~i~~~~~G~~~~~i~v~G~~~Hss~-p~-~g~nai~~~~~~l~~l~~~~~~~~~~~ 112 (283)
..++.+++|..+++|+++|+++|+|. |+ .|.||+..+++++..|+++..+. .
T Consensus 175 ~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-~-- 251 (401)
T TIGR01879 175 GDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-G-- 251 (401)
T ss_pred ccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-C--
Confidence 23678999999999999999999986 53 57999999999999998864321 1
Q ss_pred CccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccC
Q 023343 113 PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (283)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (283)
.+.+.+++.|+.++.+.|+||++|++.+|+|+.|+++.+++.+++++.++.....
T Consensus 252 ---------~~~~~~vg~i~~g~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~~---------------- 306 (401)
T TIGR01879 252 ---------DPTVGTVGKVEARPNGVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISDE---------------- 306 (401)
T ss_pred ---------CCeEEEEEEEEecCCceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 1246688999833477999999999999999999999899999998888765432
Q ss_pred CCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCC-CceeecCCchhhHhhhhCCCcEEEEcCCCCccCCCCC
Q 023343 193 DENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFDVQTAGYGLMATYHADN 271 (283)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~-~~~~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~n 271 (283)
.+.+++++....+|++ +.|+++++++.+++++. |.. ....+.|+ +|+++|.+.++|+++||||....+|++|
T Consensus 307 ---~~~~~~~~~~~~~~~~--~~d~~lv~~l~~a~~~~-g~~~~~~~~~gg-tDa~~~~~~~~~~v~fgPg~~~~aH~~d 379 (401)
T TIGR01879 307 ---RDIGIDIERWMDEEPV--PCSEELVAALTELCERL-GYNARVMVSGAG-HDAQILAPIVPIGMIFIPSINGISHNPA 379 (401)
T ss_pred ---cCceEEEEEeecCCCc--CCCHHHHHHHHHHHHHc-CCCccccccchH-HHHHHHHhhCCEEEEEecCCCCCcCCCC
Confidence 1345666655556764 46889999999999875 543 33345566 5999999888999999999877899999
Q ss_pred cccchhhhhhh
Q 023343 272 EYCLLSDIRLT 282 (283)
Q Consensus 272 E~i~~~~l~~~ 282 (283)
||+++++|.++
T Consensus 380 E~v~~e~l~~~ 390 (401)
T TIGR01879 380 EWSNITDCAEG 390 (401)
T ss_pred ccCCHHHHHHH
Confidence 99999999875
No 35
>PRK09133 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=254.79 Aligned_cols=248 Identities=19% Similarity=0.143 Sum_probs=186.5
Q ss_pred cccccccCCCceeEEEEEEeccc-cCCCCCcCHHHHHHccccccCCCCceEEecCCC------C-----CceeccCCcee
Q 023343 2 RKLGETKLKLKSTVIAVFIASEE-NSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD------K-----QPCIGTGGMIP 69 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE-~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~------~-----~i~~~~~G~~~ 69 (283)
++|++.+..++++|.|+|++||| .|+ .|+++++++.. ..+++|++++ |++. + .+++++||..+
T Consensus 154 ~~l~~~~~~~~~~i~~~~~~dEE~~g~---~G~~~l~~~~~-~~~~~~~~i~-e~~~~~~~~~gept~~~i~~g~kG~~~ 228 (472)
T PRK09133 154 IRLKREGFKPKRDIILALTGDEEGTPM---NGVAWLAENHR-DLIDAEFALN-EGGGGTLDEDGKPVLLTVQAGEKTYAD 228 (472)
T ss_pred HHHHhcCCCCCCCEEEEEECccccCcc---chHHHHHHHHh-hccCeEEEEE-CCCccccCCCCCceEEEeeeecceeEE
Confidence 56777777889999999999999 666 79999998653 3346788988 7654 2 24579999999
Q ss_pred EEEEEeecCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCC-C----------------------------CCCc------
Q 023343 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDF-P----------------------------PHPK------ 114 (283)
Q Consensus 70 ~~i~v~G~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~-~----------------------------~~~~------ 114 (283)
++|+++|+++|||.|+ +.||+..|+++|.+|++...... . +.+.
T Consensus 229 ~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (472)
T PRK09133 229 FRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALL 307 (472)
T ss_pred EEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHH
Confidence 9999999999999997 58999999999999976421100 0 0000
Q ss_pred cccccc--cCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccC
Q 023343 115 EQVYGF--ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (283)
Q Consensus 115 ~~~~~~--~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (283)
.....+ ....+++++.|+ +|.+.|+||++|++.+|+|++|+++.+++.++|++.++.
T Consensus 308 ~~~~~~~~~~~~t~~~~~i~-gG~~~NvVP~~a~~~lDiR~~p~~~~e~v~~~I~~~i~~-------------------- 366 (472)
T PRK09133 308 SADPSYNAMLRTTCVATMLE-GGHAENALPQRATANVNCRIFPGDTIEAVRATLKQVVAD-------------------- 366 (472)
T ss_pred hcCcchhheeeeeEEeeEEe-cCCcCccCCCceEEEEEEEeCCchhHHHHHHHHHHHhcC--------------------
Confidence 000011 123588999999 889999999999999999999999988888888777642
Q ss_pred CCCcceeEEEEEcC-CCCccccCCCCHHHHHHHHHHHHHh-CCC-CceeecCCchhhHhhhhCCCcEE----EEcCCCCc
Q 023343 193 DENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVV-GHV-NPYSITGTLPLIRELQDEGFDVQ----TAGYGLMA 265 (283)
Q Consensus 193 ~~~~~~~~~~~~~~-~~p~~~~~~d~~~~~~l~~~~~~~~-g~~-~~~~~~gg~~da~~~~~~g~p~v----~~g~g~~~ 265 (283)
..++++... ..++...+.+.++++.+++++++++ |.+ .+..+.|+ +|++++...|+|++ +|||+..+
T Consensus 367 -----~~v~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~gg-tDa~~~~~~gip~~~~~~i~gp~~~~ 440 (472)
T PRK09133 367 -----PAIKITRIGDPSPSPASPLRPDIMKAVEKLTAAMWPGVPVIPSMSTGA-TDGRYLRAAGIPTYGVSGLFGDPDDT 440 (472)
T ss_pred -----CCEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHHCCCCceeccccccc-cchHHHHhcCCCceeecCcccCcccc
Confidence 123343322 2334456678899999999999987 443 24446677 59999988899997 36777667
Q ss_pred cCCCCCcccchhhhhhh
Q 023343 266 TYHADNEYCLLSDIRLT 282 (283)
Q Consensus 266 ~~H~~nE~i~~~~l~~~ 282 (283)
.+|++||||++++|.++
T Consensus 441 ~aH~~dE~v~i~~l~~~ 457 (472)
T PRK09133 441 FAHGLNERIPVASFYEG 457 (472)
T ss_pred cCCCCCCceeHHHHHHH
Confidence 89999999999999875
No 36
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1e-32 Score=248.56 Aligned_cols=242 Identities=17% Similarity=0.130 Sum_probs=185.4
Q ss_pred cccccccCCCceeEEEEEEeccccC-----CCCCcCHHHHHHccc--------------------cccCCCCceEEe--c
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGL--------------------LNKLKGGPLYWI--D 54 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~l~~~~~--------------------~~~~~~d~~~~~--e 54 (283)
++|++.+.+++++|.|+|++|||.| + .|++++++... ..+.++|++++. |
T Consensus 105 ~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~e 181 (413)
T PRK09290 105 RTLNERGIRPRRPIEVVAFTNEEGSRFGPAM---LGSRVFTGALTPEDALALRDADGVSFAEALAAIGYDGDEAVGAARA 181 (413)
T ss_pred HHHHHcCCCCCCCeEEEEEcCCccccccCcc---ccHHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 5677778788999999999999984 3 58888764321 123566777654 4
Q ss_pred CCC---------------------CCceeccCCceeEEEEEeecCCCcC-CC-CCCCCHHHHHHHHHHHHHhhhcCCCCC
Q 023343 55 TAD---------------------KQPCIGTGGMIPWKLHVTGKLFHSG-LP-HKAINPLELAMEALKVIQTRFYKDFPP 111 (283)
Q Consensus 55 ~~~---------------------~~i~~~~~G~~~~~i~v~G~~~Hss-~p-~~g~nai~~~~~~l~~l~~~~~~~~~~ 111 (283)
|+. ..++.+++|..+++|+++|+++|+| .| +.|.||+..+++++++|+++..+. .
T Consensus 182 pt~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~-~- 259 (413)
T PRK09290 182 RRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH-G- 259 (413)
T ss_pred CCCccEEEEEEeccCHHHHHCCCcEEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc-C-
Confidence 442 2477899999999999999999998 68 588999999999999998764221 1
Q ss_pred CCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCccccc
Q 023343 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (283)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 191 (283)
.+.+++++.++.++.+.|+||++|++.+|+|++|+++.+++.++|++.++.....
T Consensus 260 ----------~~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~--------------- 314 (413)
T PRK09290 260 ----------PDLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVAELRAAAEAIAAR--------------- 314 (413)
T ss_pred ----------CCeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 1247788999833478999999999999999999999999999998888875432
Q ss_pred CCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-ceeecCCchhhHhhhhCCCcE-EEEcCCCCccCCC
Q 023343 192 PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQDEGFDV-QTAGYGLMATYHA 269 (283)
Q Consensus 192 ~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~~~gg~~da~~~~~~g~p~-v~~g~g~~~~~H~ 269 (283)
.+.+++++....+|++. .|+++++.+.+++++. |.++ .....|+ +|+++|.. ++|+ +.|||+....+|+
T Consensus 315 ----~~~~~e~~~~~~~~~~~--~d~~lv~~l~~a~~~~-g~~~~~~~~~g~-tDa~~~~~-~iP~~~~~gp~~~~~~H~ 385 (413)
T PRK09290 315 ----RGVEVEIELISRRPPVP--FDPGLVAALEEAAERL-GLSYRRLPSGAG-HDAQILAA-VVPTAMIFVPSVGGISHN 385 (413)
T ss_pred ----cCCeEEEEEEecCCCcc--CCHHHHHHHHHHHHHc-CCCccccCCccc-hHHHHHhc-cCCEEEEEeccCCCCCCC
Confidence 13455665555577654 6789999999999775 6443 3345566 58998864 7997 6688886667999
Q ss_pred CCcccchhhhhhh
Q 023343 270 DNEYCLLSDIRLT 282 (283)
Q Consensus 270 ~nE~i~~~~l~~~ 282 (283)
+||++++++|.++
T Consensus 386 ~dE~v~i~~l~~~ 398 (413)
T PRK09290 386 PAEFTSPEDCAAG 398 (413)
T ss_pred ccccCCHHHHHHH
Confidence 9999999999865
No 37
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=6.8e-33 Score=249.88 Aligned_cols=243 Identities=15% Similarity=0.097 Sum_probs=182.2
Q ss_pred cccccccCCCceeEEEEEEeccccC-----CCCCcCHHHHHHccccc--------------------cCCCC--------
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGLLN--------------------KLKGG-------- 48 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~l~~~~~~~--------------------~~~~d-------- 48 (283)
++|++.+..++++|.|+|++|||.| + .|+.++......+ +..++
T Consensus 108 ~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (412)
T PRK12893 108 RTLNDAGIRTRRPIEVVSWTNEEGARFAPAM---LGSGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRAV 184 (412)
T ss_pred HHHHHcCCCCCCCeEEEEEcccccccccccc---ccHHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCCc
Confidence 5677788788999999999999986 4 6888887553211 00111
Q ss_pred -ceEEec----------CCCCCceeccCCceeEEEEEeecCCCcCC-CC-CCCCHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 023343 49 -PLYWID----------TADKQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPKE 115 (283)
Q Consensus 49 -~~~~~e----------~~~~~i~~~~~G~~~~~i~v~G~~~Hss~-p~-~g~nai~~~~~~l~~l~~~~~~~~~~~~~~ 115 (283)
..+..+ +....++++++|..+++|+++|+++|+|. |+ .|.||+..|++++.+|+++..+ ..+
T Consensus 185 ~~~~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~-~~~---- 259 (412)
T PRK12893 185 DAYLELHIEQGPVLEAEGLPIGVVTGIQGIRWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAA-LAP---- 259 (412)
T ss_pred cEEEEEEeccCHHHHHCCCcEEEEeeecccEEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHh-cCC----
Confidence 111111 11235778999999999999999999985 74 7999999999999999886432 111
Q ss_pred ccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCC
Q 023343 116 QVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDEN 195 (283)
Q Consensus 116 ~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (283)
..+++++.|+.++.+.|+||++|++.+|+|++|+++.+++.++|++.++.....
T Consensus 260 -------~~~~~vg~i~ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~------------------- 313 (412)
T PRK12893 260 -------DGVATVGRLRVEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAACAKIAAA------------------- 313 (412)
T ss_pred -------CceEEEEEEEeeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 247889999833579999999999999999999999999999998888875432
Q ss_pred cceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCC-CceeecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCccc
Q 023343 196 IRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYC 274 (283)
Q Consensus 196 ~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~-~~~~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i 274 (283)
++.+++++....+|++. .|+++++++++++++. |.+ ......|+ +|+++|.+.+.+++.|||+....+|++||++
T Consensus 314 ~~~~v~~~~~~~~~~~~--~d~~l~~~l~~~~~~~-g~~~~~~~~~g~-tD~~~~~~~~p~~v~~gp~~~~~~Hs~dE~v 389 (412)
T PRK12893 314 RGVQVTVETVWDFPPVP--FDPALVALVEAAAEAL-GLSHMRMVSGAG-HDAMFLARVAPAAMIFVPCRGGISHNEAEDT 389 (412)
T ss_pred cCCeEEEEEEecCCCcC--CCHHHHHHHHHHHHHc-CCCccccCCccH-HHHHHHHhhCCEEEEEeecCCCCCCCccccC
Confidence 13455655444566654 5688999999988774 644 33344556 5899988865447889998666789999999
Q ss_pred chhhhhhh
Q 023343 275 LLSDIRLT 282 (283)
Q Consensus 275 ~~~~l~~~ 282 (283)
++++|.++
T Consensus 390 ~i~~l~~~ 397 (412)
T PRK12893 390 EPADLAAG 397 (412)
T ss_pred CHHHHHHH
Confidence 99999875
No 38
>PRK07907 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-32 Score=246.95 Aligned_cols=251 Identities=14% Similarity=0.097 Sum_probs=188.3
Q ss_pred cCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC-----CceeccCCceeEEEEEe--ecCCC
Q 023343 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVT--GKLFH 80 (283)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~-----~i~~~~~G~~~~~i~v~--G~~~H 80 (283)
+.+++++|.|++++|||.|+ .|+++++++.. +.+++|++++.||+.. .+.+++||.++++++++ |+++|
T Consensus 140 ~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~H 215 (449)
T PRK07907 140 GGDLPVGVTVFVEGEEEMGS---PSLERLLAEHP-DLLAADVIVIADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVH 215 (449)
T ss_pred ccCCCCcEEEEEEcCcccCC---ccHHHHHHhch-HhhcCCEEEEecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCC
Confidence 34577899999999999998 79999998642 2346789999998764 36789999999999998 88999
Q ss_pred cCCC-CCCCCHHHHHHHHHHHHHhhhcC----CCCCCCccccc-----cc----------------------cCCCcccc
Q 023343 81 SGLP-HKAINPLELAMEALKVIQTRFYK----DFPPHPKEQVY-----GF----------------------ETPSTMKP 128 (283)
Q Consensus 81 ss~p-~~g~nai~~~~~~l~~l~~~~~~----~~~~~~~~~~~-----~~----------------------~~~~~~~~ 128 (283)
||.| ..+.||+..|++++++|.+...+ .+......... .| ....++++
T Consensus 216 ss~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i 295 (449)
T PRK07907 216 SGQFGGAAPDALTALVRLLATLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITV 295 (449)
T ss_pred CccccccCCCHHHHHHHHHHhhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEE
Confidence 9974 66899999999999999764211 00000000000 00 11347778
Q ss_pred eEEecC--CCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcC
Q 023343 129 TQWSYP--GGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE 206 (283)
Q Consensus 129 ~~i~~~--g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (283)
+.|+.+ +...|+||++|++.+|+|++|+++.+++.+.|+++++... .++.++++++..
T Consensus 296 ~~i~~~~~g~~~nvIP~~a~~~~diR~~p~~~~e~v~~~l~~~l~~~~--------------------~~~~~~~~~~~~ 355 (449)
T PRK07907 296 IGIDAPPVAGASNALPPSARARLSLRVAPGQDAAEAQDALVAHLEAHA--------------------PWGAHVTVERGD 355 (449)
T ss_pred EeeecCCCCCCCCEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcC--------------------CCCcEEEEEECC
Confidence 888732 4678999999999999999999999999999999987631 112456666656
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCch--hhHhhhhC-CCcEEEEcCCCC-ccCCCCCcccchhhhhhh
Q 023343 207 ATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLP--LIRELQDE-GFDVQTAGYGLM-ATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 207 ~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~~--da~~~~~~-g~p~v~~g~g~~-~~~H~~nE~i~~~~l~~~ 282 (283)
.++|+.+++++++++.+++++++++|.++.....+|++ ++.+.... ++|++.||||.. .++|++||+|++++|.++
T Consensus 356 ~~~p~~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~Gpg~~~~~aH~~nE~i~i~~l~~~ 435 (449)
T PRK07907 356 AGQPFAADASGPAYDAARAAMREAWGKDPVDMGMGGSIPFIAELQEAFPQAEILVTGVEDPKTRAHSPNESVHLGELERA 435 (449)
T ss_pred CcCceeCCCCCHHHHHHHHHHHHHhCCCceecCCCCcHHHHHHHHHhcCCCcEEEeccCCCCCCCcCCCCCcCHHHHHHH
Confidence 67888888999999999999999998765443334432 23333333 589999999974 689999999999999875
No 39
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1.5e-32 Score=247.49 Aligned_cols=241 Identities=14% Similarity=0.068 Sum_probs=181.8
Q ss_pred CcccccccCCCceeEEEEEEeccccCCC--CCcCHHHH------------------------HHccccccCCCCceEEec
Q 023343 1 MRKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDAL------------------------VKDGLLNKLKGGPLYWID 54 (283)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g~~--~~~G~~~l------------------------~~~~~~~~~~~d~~~~~e 54 (283)
++.|++.+.+++++|.|++++|||.++- ...|+..+ .+.++ ..|++++.+
T Consensus 107 ~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~ 182 (414)
T PRK12891 107 VRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGY----AGAEPVGGY 182 (414)
T ss_pred HHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCC----CcccccccC
Confidence 3678888999999999999999998530 00366533 33332 223333333
Q ss_pred CC-----------------C--CCceeccCCceeEEEEEeecCCCcC-CCC-CCCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 023343 55 TA-----------------D--KQPCIGTGGMIPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (283)
Q Consensus 55 ~~-----------------~--~~i~~~~~G~~~~~i~v~G~~~Hss-~p~-~g~nai~~~~~~l~~l~~~~~~~~~~~~ 113 (283)
|. + ..++++++|..+++|+++|+++|+| .|+ .|.||+..+++++..|+++.... .
T Consensus 183 ~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~~-~--- 258 (414)
T PRK12891 183 PVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGRRD-A--- 258 (414)
T ss_pred CCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-C---
Confidence 21 1 2467899999999999999999998 575 58999999999999998864321 1
Q ss_pred ccccccccCCCcccceEEecCC-CccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccC
Q 023343 114 KEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (283)
Q Consensus 114 ~~~~~~~~~~~~~~~~~i~~~g-~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (283)
.+.+++++.|+ +| .+.|+||++|++.+|+|++|+++.+++.++|++.++.....
T Consensus 259 --------~~~t~~vg~I~-gG~~~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~~---------------- 313 (414)
T PRK12891 259 --------PDARATVGMID-ARPNSRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELARIADE---------------- 313 (414)
T ss_pred --------CCeEEEEEEEE-eeCCCcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 13588999999 65 68999999999999999999998888989988888765432
Q ss_pred CCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-ceeecCCchhhHhhhhCCCcE-EEEcCCCCccCCCC
Q 023343 193 DENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQDEGFDV-QTAGYGLMATYHAD 270 (283)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~~~gg~~da~~~~~~g~p~-v~~g~g~~~~~H~~ 270 (283)
++++++++....+|++. .|+++++.+++++++ .|.+. ...+.|| +|+.++. .|+|+ +.|||+....+|++
T Consensus 314 ---~~~~~~~~~~~~~~~~~--~d~~lv~~l~~a~~~-~G~~~~~~~~~gg-tDa~~~~-~giPt~~~~gp~~~~~aH~~ 385 (414)
T PRK12891 314 ---TGLRADIEQIFGYAPAP--FAPGCIDAVRDAARA-LGLSHMDIVSGAG-HDACFAA-RGAPTGMIFVPCVDGLSHNE 385 (414)
T ss_pred ---hCCEEEEEEEecCCCcC--CCHHHHHHHHHHHHH-cCCCceecCCcch-HHHHHHH-hhCCEEEEEEcCCCCCCCCc
Confidence 23566666555677754 577999999999866 56543 3345666 5888764 48998 67899876678999
Q ss_pred Ccccchhhhhhh
Q 023343 271 NEYCLLSDIRLT 282 (283)
Q Consensus 271 nE~i~~~~l~~~ 282 (283)
||++++++|..+
T Consensus 386 dE~v~i~~l~~~ 397 (414)
T PRK12891 386 AEAITPEWFAAG 397 (414)
T ss_pred cccCCHHHHHHH
Confidence 999999999765
No 40
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=3.7e-32 Score=246.86 Aligned_cols=242 Identities=18% Similarity=0.215 Sum_probs=184.2
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCC--------ceeccCCceeEEEE
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQ--------PCIGTGGMIPWKLH 73 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~--------i~~~~~G~~~~~i~ 73 (283)
++|++.+.+++++|.|+|++|||.| .|+++|++++.+++ +|++++.|+.... +....+|..+++|+
T Consensus 199 ~~L~~~~~~~~g~V~~if~pdEE~g----~Ga~~li~~g~~~~--~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~ 272 (478)
T PLN02280 199 KILKSREHLLKGTVVLLFQPAEEAG----NGAKRMIGDGALDD--VEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAV 272 (478)
T ss_pred HHHHhccccCCceEEEEeccccccc----chHHHHHHCCCCcC--CCEEEEEecCCCCCCceeEecccccccceeEEEEE
Confidence 4566677778999999999999985 49999999987765 4677776654221 12344599999999
Q ss_pred EeecCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEe
Q 023343 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (283)
Q Consensus 74 v~G~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~ 153 (283)
++|+++|+|.|+.|+||+..|++++..++++..+...+. .+.+++++.|+ ||.+.|+||++|++.+|+|+
T Consensus 273 v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~---------~~~tvnvg~I~-GG~~~NvIPd~~~l~~diR~ 342 (478)
T PLN02280 273 ISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPL---------DSQVVSVTTMD-GGNNLDMIPDTVVLGGTFRA 342 (478)
T ss_pred EECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCC---------CCcEEEEEEEE-ccCCCCEeCCEEEEEEEEec
Confidence 999999999999999999999999999988643322211 23578999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEc----CCCCccccCCCCHHHHHHHHHHHH
Q 023343 154 TPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFD----EATNGVACNLDSRGFHVLCKATEE 229 (283)
Q Consensus 154 ~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~d~~~~~~l~~~~~~ 229 (283)
+|+.+.+++.++|++.++..... +++++++++. ..+|+.. .+.++++.+++++.+
T Consensus 343 ~~~e~~e~l~~~I~~~~~~~a~~-------------------~g~~~~v~~~~~~~~~~pp~~--n~~~l~~~~~~~a~~ 401 (478)
T PLN02280 343 FSNTSFYQLLKRIQEVIVEQAGV-------------------FRCSATVDFFEKQNTIYPPTV--NNDAMYEHVRKVAID 401 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-------------------hCCeEEEEEeccccCCCCCcc--CCHHHHHHHHHHHHH
Confidence 99888888888888887764322 1345555542 2366643 577899999999888
Q ss_pred HhCCCC--c-eeecCCchhhHhhhhCCCcEEEEcCC-------CCccCCCCCcccchhhhhhh
Q 023343 230 VVGHVN--P-YSITGTLPLIRELQDEGFDVQTAGYG-------LMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 230 ~~g~~~--~-~~~~gg~~da~~~~~~g~p~v~~g~g-------~~~~~H~~nE~i~~~~l~~~ 282 (283)
+.|.+. . ....|+ +|+.+|.+ .+|++.||+| ....+|+++|++++++|..+
T Consensus 402 ~~G~~~~~~~~~~~g~-tD~~~~~~-~vP~i~~glG~~~~~~G~~~~~Htp~e~id~~~L~~~ 462 (478)
T PLN02280 402 LLGPANFTVVPPMMGA-EDFSFYSQ-VVPAAFYYIGIRNETLGSTHTGHSPYFMIDEDVLPIG 462 (478)
T ss_pred hcCccccccCCCCeee-chHHHHHh-hCCEEEEEEeecCCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 777541 1 123566 58888887 4999877433 22378999999999998754
No 41
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-32 Score=244.08 Aligned_cols=248 Identities=23% Similarity=0.234 Sum_probs=187.9
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHcccc-ccCCCCceEEecCC-----CCCceeccCCceeEEEEEe
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLL-NKLKGGPLYWIDTA-----DKQPCIGTGGMIPWKLHVT 75 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~-~~~~~d~~~~~e~~-----~~~i~~~~~G~~~~~i~v~ 75 (283)
+.|++.+..++++|.++|++|||+++ .|+..++.++.. .++++|++++.|++ ...++++++|..+++|+++
T Consensus 129 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~~~~~~~~~~~~~~~~~~d~~i~~E~~~~~~~~~~~~~~~kG~~~~~v~v~ 205 (409)
T COG0624 129 SALKAAGGELPGDVRLLFTADEESGG---AGGKAYLEEGEEALGIRPDYEIVGEPTLESEGGDIIVVGHKGSLWLEVTVK 205 (409)
T ss_pred HHHHHhCCCCCeEEEEEEEeccccCC---cchHHHHHhcchhhccCCCEEEeCCCCCcccCCCeEEEcceeEEEEEEEEE
Confidence 45666667889999999999999998 677777776532 23578999999983 3345679999999999999
Q ss_pred ecCCCcCC--CCCCCCHH----HHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEec-------CCCccceec
Q 023343 76 GKLFHSGL--PHKAINPL----ELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY-------PGGGINQIP 142 (283)
Q Consensus 76 G~~~Hss~--p~~g~nai----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~g~~~nviP 142 (283)
|+++|+|. |+.+.|++ ..+.+++..+.++....+. .+.+++++.+.. ++...|+||
T Consensus 206 G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~nviP 274 (409)
T COG0624 206 GKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGFD-----------GPLGLNVGLILAGPGASVNGGDKVNVIP 274 (409)
T ss_pred eecccccccCCcccccHHHHHHHHHHHHHHHhccccccccc-----------CCccccccccccCCcccccCCccCceec
Confidence 99999998 89999954 4444444444433221111 023455554441 334469999
Q ss_pred CccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHH
Q 023343 143 GECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHV 222 (283)
Q Consensus 143 ~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~ 222 (283)
++|++.+|+|+.|+++.+++.+++++.++..... .+..+++......+++.++.++++++.
T Consensus 275 ~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~ 335 (409)
T COG0624 275 GEAEATVDIRLLPGEDLDDVLEELEAELRAIAPK-------------------EGVEYEIEPGLGEPPLPVPGDSPLVAA 335 (409)
T ss_pred ceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccc-------------------cCceEEeccccCCccccCCCchHHHHH
Confidence 9999999999999999999999999999875421 023344443245667778889999999
Q ss_pred HHHHHHHHhCCCCceeecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 223 LCKATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 223 l~~~~~~~~g~~~~~~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
+.+++++.+|.++.....|+++|++|++..|+|++.||||..+.+|++|||+++++|.++
T Consensus 336 l~~~~~~~~g~~~~~~~~G~~~da~~~~~~~~~~~~fgp~~~~~~H~~~E~v~i~~l~~~ 395 (409)
T COG0624 336 LAEAAEELLGLPPEVSTGGGTHDARFFARLGIPAVIFGPGDIGLAHQPNEYVELEDLVKG 395 (409)
T ss_pred HHHHHHHhhCCCceecCCCCcchHHHHHhcCCeeEEECCCCcccccCCCceeeHHHHHHH
Confidence 999999988876444445555799999999999999999977899999999999999875
No 42
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=3.5e-32 Score=245.28 Aligned_cols=246 Identities=14% Similarity=0.048 Sum_probs=183.1
Q ss_pred cccccccCCCceeEEEEEEeccccCCC--CCcCHHHHHHccc--------------------cccCCCCceEE--ecCC-
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDALVKDGL--------------------LNKLKGGPLYW--IDTA- 56 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~--~~~G~~~l~~~~~--------------------~~~~~~d~~~~--~e~~- 56 (283)
+.|++.+..++++|.|++++|||.|+- ...|++.+..... ..+..+|++.. .+|+
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ep~~ 185 (414)
T PRK12890 106 AALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRPPGA 185 (414)
T ss_pred HHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCC
Confidence 467777778899999999999997430 0157766654321 01223343332 3442
Q ss_pred --------------------CCCceeccCCceeEEEEEeecCCCcCC-CC-CCCCHHHHHHHHHHHHHhhhcCCCCCCCc
Q 023343 57 --------------------DKQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPK 114 (283)
Q Consensus 57 --------------------~~~i~~~~~G~~~~~i~v~G~~~Hss~-p~-~g~nai~~~~~~l~~l~~~~~~~~~~~~~ 114 (283)
...++.+++|..+++|+++|+++|+|. |+ .+.||+..+++++.+|+++..+ ..
T Consensus 186 ~~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~-~~---- 260 (414)
T PRK12890 186 VAAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARA-LL---- 260 (414)
T ss_pred ccEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHh-cC----
Confidence 234778999999999999999999985 85 5589999999999999886422 11
Q ss_pred cccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCC
Q 023343 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE 194 (283)
Q Consensus 115 ~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (283)
.+.+++++.|+.++.+.|+||++|++.+|+|++|+++.+++.++|++.++.....
T Consensus 261 -------~~~~~~~g~i~~gg~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~------------------ 315 (414)
T PRK12890 261 -------HDLVATVGRLDVEPNAINVVPGRVVFTLDLRSPDDAVLEAAEAALLAELEAIAAA------------------ 315 (414)
T ss_pred -------CCeEEEEEEEEECCCCceEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 1357789999833579999999999999999999999999999998888875432
Q ss_pred CcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-ceeecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcc
Q 023343 195 NIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEY 273 (283)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~ 273 (283)
.+.+++++....+|++. .++++++++.+++++. |.++ .....|+ +|+++|.+.|.+++.|||+....+|++||+
T Consensus 316 -~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~-g~~~~~~~~~g~-tDa~~~~~~gp~~~~~gp~~~~~aHs~dE~ 390 (414)
T PRK12890 316 -RGVRIELERLSRSEPVP--CDPALVDAVEAAAARL-GYPSRRMPSGAG-HDAAAIARIGPSAMIFVPCRGGISHNPEEA 390 (414)
T ss_pred -hCCeEEEEEeecCCCcC--CCHHHHHHHHHHHHHc-CCCceecCCccc-HHHHHHHhhCCEEEEEecCCCCCCCCcCcc
Confidence 13456665555566654 5789999999999874 6543 2334566 599999988866778899876679999999
Q ss_pred cchhhhhhh
Q 023343 274 CLLSDIRLT 282 (283)
Q Consensus 274 i~~~~l~~~ 282 (283)
+++++|.++
T Consensus 391 v~i~~l~~~ 399 (414)
T PRK12890 391 MDPEDLAAG 399 (414)
T ss_pred CCHHHHHHH
Confidence 999999865
No 43
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=100.00 E-value=7.6e-32 Score=245.76 Aligned_cols=243 Identities=17% Similarity=0.093 Sum_probs=177.3
Q ss_pred CcccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEec---------CCCCCc-----------
Q 023343 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWID---------TADKQP----------- 60 (283)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e---------~~~~~i----------- 60 (283)
+++|++.+.+++++|.|+|++|||+|+ .|+.++++++. .+|++++.+ ++....
T Consensus 129 ~~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~----~~d~~~~~d~~~~~~~ge~g~~~~~~~~~~~~~~~ 201 (466)
T TIGR01886 129 MKILKELGLPPSKKIRFVVGTNEETGW---VDMDYYFKHEE----TPDFGFSPDAEFPIINGEKGNFTLELSFKGDNKGD 201 (466)
T ss_pred HHHHHHhCCCCCCCEEEEEECccccCc---ccHHHHHhcCc----CCCEEEECCCCceeEEEecceEEEEEEEecCCCCc
Confidence 356788888899999999999999998 79999998754 245654433 222110
Q ss_pred -------------------------------------eeccCCce---------eEEEEEeecCCCcCCCCCCCCHHHHH
Q 023343 61 -------------------------------------CIGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLELA 94 (283)
Q Consensus 61 -------------------------------------~~~~~G~~---------~~~i~v~G~~~Hss~p~~g~nai~~~ 94 (283)
..+++|.+ +++|+++|+++|||.|+.|+||+..|
T Consensus 202 ~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~ 281 (466)
T TIGR01886 202 YVLDSFKAGLAENMVPQVARAVISGPDAEALKAAYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFL 281 (466)
T ss_pred eeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHHHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHH
Confidence 01355544 68899999999999999999999999
Q ss_pred HHHHHHH----------Hhh---hcCC-CCCCC-ccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCH
Q 023343 95 MEALKVI----------QTR---FYKD-FPPHP-KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (283)
Q Consensus 95 ~~~l~~l----------~~~---~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~ 159 (283)
++++..+ +.+ .... +.... ......+..+.|+|++.|+ +|.. | ++|++.+|+|++|+++.
T Consensus 282 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~S~nvgvI~-gG~~-~---~~~~l~iD~R~~Pge~~ 356 (466)
T TIGR01886 282 ALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKLGIAFHDELMGDLAMNAGMFD-FDHA-N---KESKLLLNFRYPQGTSP 356 (466)
T ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCcccCCCcccccCcCceEEEeEEEE-EecC-C---ceEEEEEEEecCCCCCH
Confidence 9998873 211 1010 00000 0001122345689999999 6644 3 79999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-cee
Q 023343 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYS 238 (283)
Q Consensus 160 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~ 238 (283)
+++.++|++.+... ..+++.. ...+|+.+++++++++.+.+++++++|++. +..
T Consensus 357 eev~~eI~~~i~~~------------------------~~v~~~~-~~~~P~~~~~ds~lv~~l~~a~~~v~G~~~~~~~ 411 (466)
T TIGR01886 357 ETMQKQVLDKFGGI------------------------VDVTYNG-HFEEPHYVPGSDPLVQTLLKVYEKHTGKKGHEVI 411 (466)
T ss_pred HHHHHHHHHHHhcc------------------------cEEEEec-ccCCCcccCCCCHHHHHHHHHHHHHhCCCCceee
Confidence 99999988877631 1233221 134455677889999999999999998754 444
Q ss_pred ecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 239 ITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 239 ~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
..|+ +|+++|.. ++|+++||||...++|++||||++++|.++
T Consensus 412 ~~gg-TDa~~~~~-~i~~gv~gPG~~~~aH~~dE~V~i~el~~a 453 (466)
T TIGR01886 412 IGGG-TYGRLLER-GVAYGAMFEGGPDVMHQANEFMMLDDLILA 453 (466)
T ss_pred ecCc-cHHHhccc-ccccccccCCCCCCccCCCcceEHHHHHHH
Confidence 6666 59999984 799888999987889999999999999876
No 44
>PRK07079 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-31 Score=244.83 Aligned_cols=253 Identities=16% Similarity=0.119 Sum_probs=187.5
Q ss_pred ccccc-ccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC-----CCceeccCCceeEEEEEe
Q 023343 2 RKLGE-TKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-----KQPCIGTGGMIPWKLHVT 75 (283)
Q Consensus 2 ~~L~~-~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~-----~~i~~~~~G~~~~~i~v~ 75 (283)
++|++ .+.++.++|.|+|++|||+|+ .|++++++++. ...++|++|+.|++. ..+++++||.++++|+++
T Consensus 140 ~~l~~~~~~~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~-~~~~~d~~iv~e~~~~~~~~~~i~~g~kG~~~~~v~v~ 215 (469)
T PRK07079 140 EQVLAARGGRLGFNVKLLIEMGEEIGS---PGLAEVCRQHR-EALAADVLIASDGPRLSAERPTLFLGSRGAVNFRLRVN 215 (469)
T ss_pred HHHHHhcCCCCCCCEEEEEECccccCC---ccHHHHHHHhH-HhcCCCEEEEeCCCccCCCCeEEEEecceEEEEEEEEe
Confidence 34443 346788999999999999998 79999998753 224578999998764 247889999999999999
Q ss_pred ec--CCCcCCCCCC--CCHHHHHHHHHHHHHhhhcCC----C----------------CCCCccccc-------------
Q 023343 76 GK--LFHSGLPHKA--INPLELAMEALKVIQTRFYKD----F----------------PPHPKEQVY------------- 118 (283)
Q Consensus 76 G~--~~Hss~p~~g--~nai~~~~~~l~~l~~~~~~~----~----------------~~~~~~~~~------------- 118 (283)
|+ +.||+ ++.| .||+..+++++..+.+...+. + .........
T Consensus 216 G~~~~~hs~-~~~g~~~nai~~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (469)
T PRK07079 216 LRDGAHHSG-NWGGLLRNPGTVLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTP 294 (469)
T ss_pred eCCCCCCCC-ccccccCCHHHHHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCH
Confidence 98 44666 4444 799999999999985421100 0 000000000
Q ss_pred --cccCCCcccceEEecCC---CccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCC
Q 023343 119 --GFETPSTMKPTQWSYPG---GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPD 193 (283)
Q Consensus 119 --~~~~~~~~~~~~i~~~g---~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (283)
......+++++.|+ +| ...|+||++|++.+|+|++|+++.+++.++|++++++...
T Consensus 295 ~~~~~~~~t~nv~~i~-gG~~~~~~NvVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~~------------------ 355 (469)
T PRK07079 295 AERVFGWNTLEVLAFK-TGNPDAPVNAIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAHGF------------------ 355 (469)
T ss_pred HHHHhhCCceEEEeee-cCCCCCcceEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCC------------------
Confidence 00112478999998 66 3589999999999999999999999999999999886310
Q ss_pred CCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCce-eecCCchhhHhhhh-CCCcEEEEcCCC-CccCCCC
Q 023343 194 ENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPY-SITGTLPLIRELQD-EGFDVQTAGYGL-MATYHAD 270 (283)
Q Consensus 194 ~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~-~~~gg~~da~~~~~-~g~p~v~~g~g~-~~~~H~~ 270 (283)
..+++++...++++.+++++|+++.+.+++++++|..+.. ...+|++|+++|.. .|+|++.||++. ...+|++
T Consensus 356 ----~~v~~~~~~~~~p~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~~g~~d~~~~~~~~giP~v~~g~~~~~~~~H~~ 431 (469)
T PRK07079 356 ----PMVEVTVERGSPATRLDPDDPWVRWALASIARTTGKKPALLPNLGGSLPNDVFADILGLPTLWVPHSYPACSQHAP 431 (469)
T ss_pred ----CCeEEEEeCCCCceecCCCCHHHHHHHHHHHHHhCCCCceecCCCcchhHHHHHHHhCCCEEEecCCCCCccCcCC
Confidence 1345666667788888899999999999999998876543 33455457777775 699999886653 3468999
Q ss_pred Ccccchhhhhhh
Q 023343 271 NEYCLLSDIRLT 282 (283)
Q Consensus 271 nE~i~~~~l~~~ 282 (283)
||||++++|.++
T Consensus 432 dE~v~l~~l~~~ 443 (469)
T PRK07079 432 NEHLLASVAREG 443 (469)
T ss_pred CCCCCHHHHHHH
Confidence 999999999875
No 45
>PRK08262 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-32 Score=248.44 Aligned_cols=252 Identities=17% Similarity=0.165 Sum_probs=184.1
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceE------EecC--CC----CCceeccCCcee
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLY------WIDT--AD----KQPCIGTGGMIP 69 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~------~~e~--~~----~~i~~~~~G~~~ 69 (283)
+.|++.+.+++++|.|+|++|||+|+ .|++++++.....+.++|+++ ..++ +. ..+.++++|..+
T Consensus 167 ~~l~~~~~~l~~~I~llf~~dEE~g~---~G~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~i~~~~kG~~~ 243 (486)
T PRK08262 167 EALLAQGFQPRRTIYLAFGHDEEVGG---LGARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPVALIGVAEKGYAT 243 (486)
T ss_pred HHHHHcCCCCCCeEEEEEecccccCC---cCHHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceEEeeEEeeeeeEE
Confidence 56777777889999999999999988 699998875322233444443 1111 11 235578999999
Q ss_pred EEEEEeecCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCC-CC-----------CCCc-----------------------
Q 023343 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD-FP-----------PHPK----------------------- 114 (283)
Q Consensus 70 ~~i~v~G~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~-~~-----------~~~~----------------------- 114 (283)
++|+++|+++|||.|+. .||+..|+++|++|++..... +. +...
T Consensus 244 ~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (486)
T PRK08262 244 LELTARATGGHSSMPPR-QTAIGRLARALTRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAK 322 (486)
T ss_pred EEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhc
Confidence 99999999999999998 999999999999998641100 00 0000
Q ss_pred cccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCC
Q 023343 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE 194 (283)
Q Consensus 115 ~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (283)
..........|++++.|+ +|...|+||++|++.+|+|++|+++.+++.++|++.++..
T Consensus 323 ~~~~~~~~~~t~~i~~I~-gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~--------------------- 380 (486)
T PRK08262 323 SPETAAMLRTTTAPTMLK-GSPKDNVLPQRATATVNFRILPGDSVESVLAHVRRAVADD--------------------- 380 (486)
T ss_pred CCccceeEEeeeeeeEEe-cCCccccCCCccEEEEEEEeCCCCCHHHHHHHHHHHhccC---------------------
Confidence 000000123588999999 8889999999999999999999999999888888777541
Q ss_pred CcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCC--CceeecCCchhhHhhhhCC-----CcEEEEcCCCCccC
Q 023343 195 NIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV--NPYSITGTLPLIRELQDEG-----FDVQTAGYGLMATY 267 (283)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~--~~~~~~gg~~da~~~~~~g-----~p~v~~g~g~~~~~ 267 (283)
+.++++......|++.+++++++++++++++++++|+. .+..+.|| +|+++|...+ +|++.+|||....+
T Consensus 381 --~~~v~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~~g~~~~~~~~~~g~-tDa~~~~~~~p~~~~~~~~~~gpg~~~~~ 457 (486)
T PRK08262 381 --RVEIEVLGGNSEPSPVSSTDSAAYKLLAATIREVFPDVVVAPYLVVGA-TDSRHYSGISDNVYRFSPLRLSPEDLARF 457 (486)
T ss_pred --ceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCccccceeccc-ccHHHHHHhcCCeEEECCccCCcccccCC
Confidence 13444443334667777789999999999999998852 23345666 5899988642 34555677765689
Q ss_pred CCCCcccchhhhhhh
Q 023343 268 HADNEYCLLSDIRLT 282 (283)
Q Consensus 268 H~~nE~i~~~~l~~~ 282 (283)
|++||++++++|.++
T Consensus 458 Ht~dE~i~i~~l~~~ 472 (486)
T PRK08262 458 HGTNERISVANYARM 472 (486)
T ss_pred CCCCCceeHHHHHHH
Confidence 999999999999875
No 46
>PRK13381 peptidase T; Provisional
Probab=100.00 E-value=1.8e-31 Score=239.99 Aligned_cols=235 Identities=15% Similarity=0.141 Sum_probs=177.2
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCC-CCCceeccCCceeEEEEEeecCCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~-~~~i~~~~~G~~~~~i~v~G~~~H 80 (283)
+.|++.+ .+.++|.|+|++|||+|+ .|+++++.+++ .+|++++.|.. .+.+.++++|..+++|+++|+++|
T Consensus 151 ~~l~~~~-~~~g~i~~~~~~dEE~g~---~G~~~~~~~~~----~~d~~~~~~~~~~~~i~~~~~G~~~~~v~v~Gk~aH 222 (404)
T PRK13381 151 ENLTENE-VEHGDIVVAFVPDEEIGL---RGAKALDLARF----PVDFAYTIDCCELGEVVYENFNAASAEITITGVTAH 222 (404)
T ss_pred HHHHhcC-CCCCCEEEEEEccccccc---ccHHHHHHhcC----CCCEEEEecCCCcceEEEecCcceEEEEEEEeEecC
Confidence 3455554 467899999999999987 79999986543 35777766532 356778999999999999999999
Q ss_pred cCC-CCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCH
Q 023343 81 SGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (283)
Q Consensus 81 ss~-p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~ 159 (283)
++. |+.|.||+..|++++.+|+++..+..... ...+++++.++ ++ |++|++.+|+|+.|+++.
T Consensus 223 a~~~p~~g~NAI~~a~~~i~~l~~~~~~~~~~~---------~~~~i~v~~i~-g~------p~~~~~~~diR~~~~~~~ 286 (404)
T PRK13381 223 PMSAKGVLVNPILMANDFISHFPRQETPEHTEG---------REGYIWVNDLQ-GN------VNKAKLKLIIRDFDLDGF 286 (404)
T ss_pred CCCCcccCcCHHHHHHHHHHhCCccCCCCCCCC---------cccEEEEEeEE-eC------cceEEEEEEEecCCHHHH
Confidence 884 88899999999999999876532211100 11245666665 32 899999999999998888
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcc-eeEEEEEcCC--CCccccCCCCHHHHHHHHHHHHHhCCCCc
Q 023343 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIR-GSLTLTFDEA--TNGVACNLDSRGFHVLCKATEEVVGHVNP 236 (283)
Q Consensus 160 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~p~~~~~~d~~~~~~l~~~~~~~~g~~~~ 236 (283)
+++.+.|++.+++..+.. + +++++++... .++..++.++++++++.+++++. |.++.
T Consensus 287 e~i~~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~-g~~~~ 346 (404)
T PRK13381 287 EARKQFIEEVVAKINAKY-------------------PTARVSLTLTDQYSNISNSIKDDRRAVDLAFDAMKEL-GIEPK 346 (404)
T ss_pred HHHHHHHHHHHHHHHHHc-------------------CCcEEEEEEEeCCchhhcccccCHHHHHHHHHHHHHc-CCCee
Confidence 888888888888765321 1 2445544332 34455667899999999999874 65433
Q ss_pred e-eecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 237 Y-SITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 237 ~-~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
. .+.|+ +|+++|...|+|+++||||. ..+|++||||++++|.++
T Consensus 347 ~~~~~g~-tDa~~~~~~giP~v~~GpG~-~~aH~~dE~v~i~~l~~~ 391 (404)
T PRK13381 347 VIPMRGG-TDGAALSAKGLPTPNLFTGA-HNFHSRFEFLPVSSFVKS 391 (404)
T ss_pred eccCCcc-chHHHHhcCCCCeEEECccc-cCCcCcceeEEHHHHHHH
Confidence 3 34566 59999988899999999996 569999999999999875
No 47
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.97 E-value=5.1e-30 Score=229.93 Aligned_cols=244 Identities=12% Similarity=0.038 Sum_probs=180.7
Q ss_pred CcccccccCCCceeEEEEEEeccccC-----CCCCcCHHHHHHccc-------cc-------------cC----------
Q 023343 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGL-------LN-------------KL---------- 45 (283)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~l~~~~~-------~~-------------~~---------- 45 (283)
++.|++.+.+++++|.+++..+||.+ . .|++.+..... .+ ++
T Consensus 100 ~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~---~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~ 176 (406)
T TIGR03176 100 VDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVF---WGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRD 176 (406)
T ss_pred HHHHHHcCCCCCCCeEEEEeccccCccCCccc---ccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCccccccccc
Confidence 46788898999999999999999975 4 67777763110 00 00
Q ss_pred CCCceEEecCCCC----------CceeccCCceeEEEEEeecCCCcCCCCC--CCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 023343 46 KGGPLYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSGLPHK--AINPLELAMEALKVIQTRFYKDFPPHP 113 (283)
Q Consensus 46 ~~d~~~~~e~~~~----------~i~~~~~G~~~~~i~v~G~~~Hss~p~~--g~nai~~~~~~l~~l~~~~~~~~~~~~ 113 (283)
++++.+=.|..++ .++.+.+|..+++|+++|+++|+|.|.. +.||+..+++++..+.++..+ ..
T Consensus 177 ~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~-~~--- 252 (406)
T TIGR03176 177 DIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE-IG--- 252 (406)
T ss_pred ccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-cC---
Confidence 1122332333222 2457899999999999999999997654 489999999999999876422 11
Q ss_pred ccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCC
Q 023343 114 KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPD 193 (283)
Q Consensus 114 ~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (283)
.+.+++++.|+.++...|+||++|++.+|+|++|+++.+.+.+++++.++++++.
T Consensus 253 --------~~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~----------------- 307 (406)
T TIGR03176 253 --------DPLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAAVLRNFTKELENDMKAIADE----------------- 307 (406)
T ss_pred --------CCcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 1357899999855788999999999999999999888888888888888776532
Q ss_pred CCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCchhhHhhhhCCCcE-EEEcCCCCccCCCCCc
Q 023343 194 ENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDV-QTAGYGLMATYHADNE 272 (283)
Q Consensus 194 ~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~~da~~~~~~g~p~-v~~g~g~~~~~H~~nE 272 (283)
++++++++.....++ +..|+++++.+++++++..+......+.|| +|+.+|.+. +|+ ++|||+..+.+|++||
T Consensus 308 --~g~~~ei~~~~~~~p--~~~d~~lv~~l~~a~~~~~~~~~~~~sggg-~Da~~~~~~-vP~~~ifgp~~~g~~H~p~E 381 (406)
T TIGR03176 308 --MDITIDIDLWMDEAP--VPMNKEIVAIIEQLAKAEKLNYRLMHSGAG-HDAQIFAPR-VPTAMIFVPSIGGISHNPAE 381 (406)
T ss_pred --cCCeEEEEEEecCCC--CCCCHHHHHHHHHHHHHcCCCceecCcccH-HHHHHHHHH-CCEEEEEEeCCCCCCCCccc
Confidence 235566554333333 346789999999999987665443445666 599999885 887 5689986668999999
Q ss_pred ccchhhhhhh
Q 023343 273 YCLLSDIRLT 282 (283)
Q Consensus 273 ~i~~~~l~~~ 282 (283)
++++++|..+
T Consensus 382 ~v~~e~l~~g 391 (406)
T TIGR03176 382 RTNIEDLVEG 391 (406)
T ss_pred cCCHHHHHHH
Confidence 9999999865
No 48
>PRK05469 peptidase T; Provisional
Probab=99.97 E-value=5.9e-30 Score=230.40 Aligned_cols=236 Identities=16% Similarity=0.092 Sum_probs=174.0
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCC-CCCceeccCCceeEEEEEeecCCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~-~~~i~~~~~G~~~~~i~v~G~~~H 80 (283)
++|++.+..++++|.|+|++|||+| .|++.++.+. .+.|++++.++. .+.+.++.+|..+++|+++|+++|
T Consensus 153 ~~l~~~~~~~~g~v~~~f~~dEE~g----~Ga~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~g~~~~~i~v~Gk~~H 224 (408)
T PRK05469 153 EYLIAHPEIKHGDIRVAFTPDEEIG----RGADKFDVEK----FGADFAYTVDGGPLGELEYENFNAASAKITIHGVNVH 224 (408)
T ss_pred HHHHhCCCCCCCCEEEEEecccccC----CCHHHhhhhh----cCCcEEEEecCCCcceEEeccCceeEEEEEEeeecCC
Confidence 4566666667899999999999986 3888886432 234566655543 245777889999999999999999
Q ss_pred cC-CCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCH
Q 023343 81 SG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (283)
Q Consensus 81 ss-~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~ 159 (283)
++ .|+.|.||+..++++++.|+......... ....+++++.++ + .|++|++.+++|+.|.++.
T Consensus 225 a~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~---------~~~~~i~~g~i~-g------gp~~~~i~~diR~~~~e~~ 288 (408)
T PRK05469 225 PGTAKGKMVNALLLAADFHAMLPADETPETTE---------GYEGFYHLTSIK-G------TVEEAELSYIIRDFDREGF 288 (408)
T ss_pred CCCCcccccCHHHHHHHHHHhCCCCCCCCCCC---------CceEEEEEEEEE-E------ccceEEEEEEEecCCHHHH
Confidence 87 58999999999999999887542111000 001235666665 3 3899999999999998888
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCC--ccccCCCCHHHHHHHHHHHHHhCCCCc-
Q 023343 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATN--GVACNLDSRGFHVLCKATEEVVGHVNP- 236 (283)
Q Consensus 160 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~d~~~~~~l~~~~~~~~g~~~~- 236 (283)
+++.++|++.++...+... ++++++++...++ ++.++.|+++++++++++++. |.++.
T Consensus 289 e~i~~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~a~~~~-g~~~~~ 349 (408)
T PRK05469 289 EARKALMQEIAKKVNAKYG------------------EGRVELEIKDQYYNMREKIEPHPHIVDLAKQAMEDL-GIEPII 349 (408)
T ss_pred HHHHHHHHHHHHHHHHHcC------------------CCeEEEEEeehhhhhhhhhcCCHHHHHHHHHHHHHc-CCCcEE
Confidence 8888888888777543210 2455665544443 234668889999999999884 65433
Q ss_pred eeecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 237 YSITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 237 ~~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
....|+ +|+++|...|+|++.||||. ..+|++||++++++|.++
T Consensus 350 ~~~~gg-tD~~~~~~~giP~v~~gpG~-~~~H~~~E~v~i~~l~~~ 393 (408)
T PRK05469 350 KPIRGG-TDGSQLSFMGLPCPNIFTGG-HNFHGKFEFVSLESMEKA 393 (408)
T ss_pred ecCCCc-ccHHHHhhCCCceEEECcCc-ccCcCcceeeEHHHHHHH
Confidence 335666 59999988899999999985 469999999999999865
No 49
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.97 E-value=9.6e-31 Score=235.33 Aligned_cols=236 Identities=14% Similarity=0.083 Sum_probs=169.5
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEEeecCCCc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v~G~~~Hs 81 (283)
++|++.+..++++|.|+|++|||.| .|++.+..+.. +.++++++..+|++ .+.+..+|..+++|+++|+++|+
T Consensus 155 ~~L~e~~~~~~g~I~~~ft~dEE~g----~Ga~~l~~~~~--~~~~~~~i~gep~g-~i~~~~~g~~~~~I~v~Gk~aHa 227 (410)
T TIGR01882 155 DYLINHPEIKHGTIRVAFTPDEEIG----RGAHKFDVKDF--NADFAYTVDGGPLG-ELEYETFSAAAAKITIQGNNVHP 227 (410)
T ss_pred HHHHhCCCCCCCCEEEEEECcccCC----cCcchhhhhhc--CccEEEEeCCCCCC-eEEEccccceEEEEEEEEEecCc
Confidence 4566654346889999999999986 38888765432 12233344444443 45666789999999999999999
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHH
Q 023343 82 GLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (283)
Q Consensus 82 s~p-~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~ 160 (283)
+.+ +.++||+..+.+++..+.... .+. .++-+.+.++ ++ ..|.||++|++.+++|++++++.+
T Consensus 228 ~~~~~~g~nAi~~a~~~~~~l~~~~----~~~----------~t~~~~g~i~-~g-~i~giPd~a~l~~diR~~~~e~~e 291 (410)
T TIGR01882 228 GTAKGKMINAAQIAIDLHNLLPEDD----RPE----------YTEGREGFFH-LL-SIDGTVEEAKLHYIIRDFEKENFQ 291 (410)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCcC----CCc----------cccceeEEEE-EE-eEEEecCEEEEEEEEecCCHHHHH
Confidence 975 679999999998877654321 110 0111123455 33 467799999999999999988888
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcc-eeEEEEEcCCCC--ccccCCCCHHHHHHHHHHHHHhCCC-Cc
Q 023343 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIR-GSLTLTFDEATN--GVACNLDSRGFHVLCKATEEVVGHV-NP 236 (283)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p--~~~~~~d~~~~~~l~~~~~~~~g~~-~~ 236 (283)
++.++|++.++...+. ++ ..+++++...++ ++.+++++++++.+.+++++. |.. ..
T Consensus 292 ~i~~~i~~i~~~~~~~-------------------~g~~~v~~~~~~~~~~~~~~~~~~~~lv~~~~~a~~~~-G~~~~~ 351 (410)
T TIGR01882 292 ERKELMKRIVEKMNNE-------------------YGQDRIKLDMNDQYYNMAEKIEKVMEIVDIAKQAMENL-GIEPKI 351 (410)
T ss_pred HHHHHHHHHHHHHHHH-------------------cCCceEEEEEEeeecChhhccCCCHHHHHHHHHHHHHh-CCCCcc
Confidence 8888888888775432 12 134555444444 346678899999999999874 643 33
Q ss_pred eeecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 237 YSITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 237 ~~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
....|| +|+++|...|+|++.||||. .++|++||||++++|.++
T Consensus 352 ~~~~gg-tDa~~~~~~Gip~~~~G~G~-~~aHt~dE~v~i~~l~~~ 395 (410)
T TIGR01882 352 SPIRGG-TDGSQLSYMGLPTPNIFAGG-ENMHGRFEYISVDNMVKA 395 (410)
T ss_pred ccccee-chHHHHHhCCCCCCeEcCCc-ccCcCCceEEEHHHHHHH
Confidence 334566 59999988999999999985 679999999999999875
No 50
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.97 E-value=7.5e-30 Score=233.13 Aligned_cols=245 Identities=18% Similarity=0.122 Sum_probs=173.1
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccc--cCCCCc---eEEecCCCC------------------
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDTADK------------------ 58 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~--~~~~d~---~~~~e~~~~------------------ 58 (283)
+.|++.+.+++++|.|+|++|||+|+ .|++++++..... ++.+|. ++..|++..
T Consensus 131 ~~l~~~g~~~~~~i~l~~~~DEE~g~---~G~~~l~~~~~~~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~ 207 (466)
T PRK07318 131 KIIKELGLPLSKKVRFIVGTDEESGW---KCMDYYFEHEEAPDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLV 207 (466)
T ss_pred HHHHHcCCCCCccEEEEEEcccccCc---hhHHHHHHhCCCCCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeE
Confidence 56777787888999999999999998 7999999874211 111222 233443210
Q ss_pred ----------C------------------------ceeccCCce-----eEEEEEeecCCCcCCCCCCCCHHHHHHHHHH
Q 023343 59 ----------Q------------------------PCIGTGGMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEALK 99 (283)
Q Consensus 59 ----------~------------------------i~~~~~G~~-----~~~i~v~G~~~Hss~p~~g~nai~~~~~~l~ 99 (283)
. +..++||.. +++|+++|+++|+|.|+.|.|||..|++++.
T Consensus 208 ~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~ 287 (466)
T PRK07318 208 SFKSGLRENMVPDSAEAVITGDDLDDLIAAFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLN 287 (466)
T ss_pred EEEcCccceecCcccEEEEecCCHHHHHHHHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHH
Confidence 0 002466655 7999999999999999999999999999999
Q ss_pred HHHhh------h---cCCCC--CCCc----cccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHH
Q 023343 100 VIQTR------F---YKDFP--PHPK----EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMK 164 (283)
Q Consensus 100 ~l~~~------~---~~~~~--~~~~----~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~ 164 (283)
.|+.. + ..... .... .......+..++|++.|+ ++... +|++.+|+|++|+++.+++.+
T Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~nvg~i~-gg~~~-----~~~~~iDiR~~p~~~~~~v~~ 361 (466)
T PRK07318 288 QLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAYEDDVMGDLTMNVGVFS-FDEEK-----GGTLGLNFRYPVGTDFEKIKA 361 (466)
T ss_pred hccCchhHHHHHHHHHHhcCCCCCcccCCCcccCCCccCeEEEeeEEE-EecCc-----EEEEEEEEeCCCCCCHHHHHH
Confidence 98641 0 00000 0000 000111123578888888 54321 699999999999999999988
Q ss_pred HHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-ceeecCCc
Q 023343 165 RLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTL 243 (283)
Q Consensus 165 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~~~gg~ 243 (283)
.|++.+++. .++++....+||+..+.++++++.++++++++.|.+. ...+.||
T Consensus 362 ~i~~~~~~~-------------------------~~~~~~~~~~~p~~~~~d~~lv~~l~~a~~~~~g~~~~~~~~~gg- 415 (466)
T PRK07318 362 KLEKLIGVT-------------------------GVELSEHEHQKPHYVPKDDPLVKTLLKVYEKQTGLKGEEQVIGGG- 415 (466)
T ss_pred HHHHHHHhc-------------------------CeEEEEccCCCceeeCCCCHHHHHHHHHHHHHhCCCCCeeEEcch-
Confidence 888886531 2455555567776677899999999999999888653 4456666
Q ss_pred hhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 244 PLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 244 ~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
+|+++|.. ++|...++||....+|++|||+++++|.++
T Consensus 416 tDa~~~~~-~i~~Gp~~pg~~~~aH~~dE~v~i~~l~~~ 453 (466)
T PRK07318 416 TYARLLKR-GVAFGAMFPGSEDTMHQANEYIEIDDLIKA 453 (466)
T ss_pred HhHhhCCC-eEEeCCCCCCCCCCCcCCCcceeHHHHHHH
Confidence 59999875 666555557755679999999999999875
No 51
>PLN02693 IAA-amino acid hydrolase
Probab=99.97 E-value=6.7e-29 Score=224.14 Aligned_cols=241 Identities=17% Similarity=0.227 Sum_probs=174.8
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC----CCcee----ccCCceeEEEE
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD----KQPCI----GTGGMIPWKLH 73 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~----~~i~~----~~~G~~~~~i~ 73 (283)
++|++.+..++++|.|+|++|||. + .|++.|++++.+++ .|+++..+..+ +.+.. .++|..+++|+
T Consensus 149 ~~L~~~~~~~~g~V~~if~pdEE~-~---~Ga~~~i~~g~~~~--~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~ 222 (437)
T PLN02693 149 KILQEHRHHLQGTVVLIFQPAEEG-L---SGAKKMREEGALKN--VEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAV 222 (437)
T ss_pred HHHHhCcccCCceEEEEEEEcccc-h---hhHHHHHHCCCCCC--CCEEEEEecCCCCCCeeEEeccCcccccceEEEEE
Confidence 567777667889999999999994 4 59999999987654 34555544332 22222 25789999999
Q ss_pred EeecCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEe
Q 023343 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (283)
Q Consensus 74 v~G~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~ 153 (283)
++|+++|+|.|+.|+||+..+++++..|+++..+...+. .+.+++++.|+ ||.+.|+||++|++.+++|+
T Consensus 223 v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~---------~~~ti~vg~i~-GG~~~NvVPd~a~~~~diR~ 292 (437)
T PLN02693 223 ITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPL---------DSKVVTVSKVN-GGNAFNVIPDSITIGGTLRA 292 (437)
T ss_pred EEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCC---------CCcEEEEEEEE-cCCCCceECCeEEEEEEEec
Confidence 999999999999999999999999999988643322211 24688999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcC-CCCcc-ccCCCCHHHHHHHHHHHHHh
Q 023343 154 TPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGV-ACNLDSRGFHVLCKATEEVV 231 (283)
Q Consensus 154 ~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~-~~~~d~~~~~~l~~~~~~~~ 231 (283)
.|++ +.+.++|++.++..... +++++++++.. .+|++ .+.+|.++++++.+++++++
T Consensus 293 ~~~~--~~i~~~i~~i~~~~a~~-------------------~g~~~e~~~~~~~~~~~~~~~nd~~l~~~~~~~~~~~~ 351 (437)
T PLN02693 293 FTGF--TQLQQRIKEIITKQAAV-------------------HRCNASVNLTPNGREPMPPTVNNMDLYKQFKKVVRDLL 351 (437)
T ss_pred CCHH--HHHHHHHHHHHHHHHHH-------------------hCCcEEEEEeecCccCCCCccCCHHHHHHHHHHHHHhc
Confidence 9853 45666666666553321 13445555432 23332 24466789999999999988
Q ss_pred CCCCc---eeecCCchhhHhhhhCCCcEE--EEcCCC----CccCCCCCcccchhhhhh
Q 023343 232 GHVNP---YSITGTLPLIRELQDEGFDVQ--TAGYGL----MATYHADNEYCLLSDIRL 281 (283)
Q Consensus 232 g~~~~---~~~~gg~~da~~~~~~g~p~v--~~g~g~----~~~~H~~nE~i~~~~l~~ 281 (283)
|.+.. ....|+ +|.+|+.+ .+|.+ .+|++. ....|+++++++.+.|..
T Consensus 352 G~~~~~~~~~~~gs-eDf~~~~~-~vP~~~~~lG~~~~~~~~~~~H~~~f~~de~~l~~ 408 (437)
T PLN02693 352 GQEAFVEAAPEMGS-EDFSYFAE-TIPGHFSLLGMQDETNGYASSHSPLYRINEDVLPY 408 (437)
T ss_pred CCcceeecCCCcee-chHHHHHH-HhhhhEEEEecCCCCCCCCCCCCCCcCCCHHHHHH
Confidence 86532 223456 58888877 68886 557653 126899999999988754
No 52
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.96 E-value=2.7e-28 Score=216.45 Aligned_cols=236 Identities=19% Similarity=0.228 Sum_probs=177.2
Q ss_pred ccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCC--------ceeccCCceeEEEEE
Q 023343 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQ--------PCIGTGGMIPWKLHV 74 (283)
Q Consensus 3 ~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~--------i~~~~~G~~~~~i~v 74 (283)
.|++.+..++++|.|+|++|||.+ .|+.++++++.+++ .|++++.||.... ...+++|..+++|++
T Consensus 104 ~l~~~~~~~~~~i~~~~~~dEE~~----~G~~~~~~~~~~~~--~d~~i~~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 177 (363)
T TIGR01891 104 LLKKLADLLEGTVRLIFQPAEEGG----GGATKMIEDGVLDD--VDAILGLHPDPSIPAGTVGLRPGTIMAAADKFEVTI 177 (363)
T ss_pred HHHhchhhCCceEEEEEeecCcCc----chHHHHHHCCCCCC--cCEEEEECCCCCCCCeEEEECCCcceeecceEEEEE
Confidence 456666677899999999999985 59999998876543 4789998875421 224578899999999
Q ss_pred eecCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeC
Q 023343 75 TGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLT 154 (283)
Q Consensus 75 ~G~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~ 154 (283)
+|+++|++.|+.|.||+..|++++++++++......+. .+.+++++.|+ +|.+.|+||++|++.+|+|++
T Consensus 178 ~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~---------~~~~~~i~~i~-gG~~~nvvP~~~~~~~diR~~ 247 (363)
T TIGR01891 178 HGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPS---------RPAVVTVGIIE-AGGAPNVIPDKASMSGTVRSL 247 (363)
T ss_pred EeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCC---------CCcEEEEEEEE-cCCCCcEECCeeEEEEEEEeC
Confidence 99999999999999999999999999987643222111 13578999999 888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCC
Q 023343 155 PFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV 234 (283)
Q Consensus 155 p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~ 234 (283)
|+++.+++.+.|++.++..... .+.+++++....+|+. ..++++++.+++++++++|..
T Consensus 248 ~~~~~e~~~~~i~~~~~~~~~~-------------------~~~~ve~~~~~~~p~~--~~~~~l~~~l~~a~~~~~g~~ 306 (363)
T TIGR01891 248 DPEVRDQIIDRIERIVEGAAAM-------------------YGAKVELNYDRGLPAV--TNDPALTQILKEVARHVVGPE 306 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-------------------hCCeEEEEEecCCCCc--cCCHHHHHHHHHHHHHhcCcc
Confidence 9888888888888888765422 1346666665555653 367899999999999988843
Q ss_pred -C---ceeecCCchhhHhhhhCCCcEEE-EcCCCC------ccCCCCCcccchhh
Q 023343 235 -N---PYSITGTLPLIRELQDEGFDVQT-AGYGLM------ATYHADNEYCLLSD 278 (283)
Q Consensus 235 -~---~~~~~gg~~da~~~~~~g~p~v~-~g~g~~------~~~H~~nE~i~~~~ 278 (283)
. +..+.||+ |++++... +|+++ |.|+.. ...|++ |+..-++
T Consensus 307 ~~~~~~~~~~gg~-Da~~~~~~-~P~~~~f~~~~~~~~~~~~~~h~~-~~~~~~~ 358 (363)
T TIGR01891 307 NVAEDPEVTMGSE-DFAYYSQK-VPGAFFFLGIGNEGTGLSHPLHHP-RFDIDEE 358 (363)
T ss_pred ceeccCCCCcccc-CHHHHHHh-CCeeEEEEecCCCCCCCCCCCCCC-CCcCChH
Confidence 1 22356775 99999885 88864 555442 245666 4444443
No 53
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=99.96 E-value=4.5e-28 Score=212.83 Aligned_cols=240 Identities=21% Similarity=0.299 Sum_probs=188.6
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCC----Ccee--c--cCCceeEEEE
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK----QPCI--G--TGGMIPWKLH 73 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~----~i~~--~--~~G~~~~~i~ 73 (283)
++|++.+.+++++|+|+|+|.||.++ |+..|+++|.+++. +|+++..|+.++ .+.+ | ..+...++++
T Consensus 116 ~~L~~~~~~~~Gtv~~ifQPAEE~~~----Ga~~mi~~G~~~~~-vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~ 190 (392)
T COG1473 116 LALAEHKDNLPGTVRLIFQPAEEGGG----GAKAMIEDGVFDDF-VDAVFGLHPGPGLPVGTVALRPGALMAAADEFEIT 190 (392)
T ss_pred HHHHhhhhhCCcEEEEEecccccccc----cHHHHHhcCCcccc-ccEEEEecCCCCCCCceEEeecccceeecceEEEE
Confidence 56777777899999999999999875 89999999998876 789999998644 3322 2 5567889999
Q ss_pred EeecCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEe
Q 023343 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (283)
Q Consensus 74 v~G~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~ 153 (283)
++|+++|++.||.++||+..++.++..|+.+..+..+|.+ +.+++++.++ +|...||||+++++.+++|.
T Consensus 191 ~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~---------~~vv~vg~~~-aG~a~NVIpd~A~l~gtvR~ 260 (392)
T COG1473 191 FKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLD---------SAVVTVGKIE-AGTAANVIPDSAELEGTIRT 260 (392)
T ss_pred EEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCcc---------CeEEEEEEec-CCCcCCcCCCeeEEEEEeec
Confidence 9999999999999999999999999999998777666542 3588899999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCC
Q 023343 154 TPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH 233 (283)
Q Consensus 154 ~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~ 233 (283)
.. .++.+.+.+.+++++++++ ..+++++++++...+|+.. +|..+.+.+++++++..|+
T Consensus 261 ~~----~~~~~~~~~~i~~ia~g~a---------------~~~g~~~ei~~~~~~p~~~--Nd~~~~~~~~~~~~~~~~~ 319 (392)
T COG1473 261 FS----DEVREKLEARIERIAKGIA---------------AAYGAEAEIDYERGYPPVV--NDPALTDLLAEAAEEVGGE 319 (392)
T ss_pred CC----HHHHHHHHHHHHHHHHHHH---------------HHhCCeEEEEecCCCCCcc--CCHHHHHHHHHHHHHhccc
Confidence 96 6666777777777666665 4557899999999999866 6778999999999999874
Q ss_pred C-----CceeecCCchhhHhhhhCCCcEEEE--cCCCCc----cCCCCCcccchhhh
Q 023343 234 V-----NPYSITGTLPLIRELQDEGFDVQTA--GYGLMA----TYHADNEYCLLSDI 279 (283)
Q Consensus 234 ~-----~~~~~~gg~~da~~~~~~g~p~v~~--g~g~~~----~~H~~nE~i~~~~l 279 (283)
. ....+.||+|++.|++. +|...| |.+... ..|.|.-.++.+.|
T Consensus 320 ~~~~~~~~~~~~gsEDf~~~~~~--~Pg~~~~lG~~~~~~~~~~~H~p~~~~de~~l 374 (392)
T COG1473 320 EVVVVELPPSMAGSEDFGYYLEK--VPGAFFFLGTGSADGGTYPLHHPKFDFDEAAL 374 (392)
T ss_pred cceecccCCCCCccchHHHHHHh--CCeeEEEeecCcCCCCcccccCCcCCCCHHHH
Confidence 3 12224588766666555 565544 433322 27877665554444
No 54
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.96 E-value=6.2e-28 Score=221.05 Aligned_cols=242 Identities=17% Similarity=0.160 Sum_probs=163.1
Q ss_pred CceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC-CCce----------------e--ccCCceeEE
Q 023343 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPC----------------I--GTGGMIPWK 71 (283)
Q Consensus 11 ~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~-~~i~----------------~--~~~G~~~~~ 71 (283)
++++|.++|++|||+|+ .|++++..... ..++++..++.. +.+. + .++|..+++
T Consensus 127 ~~~~i~~~~~~dEE~g~---~Gs~~l~~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~ 199 (477)
T TIGR01893 127 KHPPLELLFTVDEETGM---DGALGLDENWL----SGKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQ 199 (477)
T ss_pred CCCCEEEEEEeccccCc---hhhhhcChhhc----CCcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEE
Confidence 56799999999999987 79999976543 223444444321 1111 1 158999999
Q ss_pred EEEee-cCCCcCC-CCCC-CCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEE
Q 023343 72 LHVTG-KLFHSGL-PHKA-INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVS 148 (283)
Q Consensus 72 i~v~G-~~~Hss~-p~~g-~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~ 148 (283)
|+++| +++|||. |+.+ .||+..|++++..+.... .++++.+. ||...|+||++|++.
T Consensus 200 i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~-------------------~~~v~~~~-gg~~~N~ip~~~~~~ 259 (477)
T TIGR01893 200 ISLKGLKGGHSGADIHKGRANANKLMARVLNELKENL-------------------NFRLSDIK-GGSKRNAIPREAKAL 259 (477)
T ss_pred EEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC-------------------CeEEEEEe-CCCcccccCCceEEE
Confidence 99999 9999984 8777 599999999999887631 12466676 788888888888888
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhhhh-------------------------------------hhhcccCCCC-----
Q 023343 149 GDVRLTPFYNVTDVMKRLQEYVDDINEN-------------------------------------IEKLDTRGPV----- 186 (283)
Q Consensus 149 ~~~R~~p~~~~~~~~~~i~~~l~~~~~~-------------------------------------~~~~~~~~~~----- 186 (283)
+|+|.......+.+.+.+.+.+...... .-.+..+.+.
T Consensus 260 ~diR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~t 339 (477)
T TIGR01893 260 IAIDENDVKLLENLVKNFQSKFKSEYSELEPNITIEVSKRENSVKVFSENTTDKLINALNGLPNGVQSVSDEEPGLVESS 339 (477)
T ss_pred EEEChhHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEECCCcccccCHHHHHHHHHHHHHCCccceeeccCCCCeEEee
Confidence 8888665433344444433333322200 0000000000
Q ss_pred ------------------cccccCCCC------------cceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCc
Q 023343 187 ------------------SKYVLPDEN------------IRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP 236 (283)
Q Consensus 187 ------------------~~~~~~~~~------------~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~ 236 (283)
-|+ .|+.. ...+++++....+|++.+++|+|+++.+.+++++++|.++.
T Consensus 340 ~n~g~i~~~~~~~~~~i~~R~-~~~~~~~~i~~~i~~~~~~~~~~v~~~~~~~p~~~~~d~plv~~l~~a~~~~~g~~~~ 418 (477)
T TIGR01893 340 LNLGVVKTKENKVIFTFLIRS-SVESDKDYVTEKIESIAKLAGARVEVSAGYPSWQPDPQSNLLDTARKVYSEMFGEDPE 418 (477)
T ss_pred eeEEEEEEcCCEEEEEEEeCC-CCchhHHHHHHHHHHHhhhcCeEEEEecCCCcccCCCCCHHHHHHHHHHHHHHCCCCe
Confidence 000 00000 00134555556789999999999999999999999997654
Q ss_pred -eeecCCchhhHhhhhC--CCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 237 -YSITGTLPLIRELQDE--GFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 237 -~~~~gg~~da~~~~~~--g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
..+.|| +|+++|.+. ++|++.|||+. .++|++||+|++++|.++
T Consensus 419 ~~~~~Gg-td~~~~~~~~~~i~~v~~Gp~~-~~~H~~nE~i~i~~l~~~ 465 (477)
T TIGR01893 419 VKVIHAG-LECGIISSKIPDIDMISIGPNI-YDPHSPNERVSISSVEKV 465 (477)
T ss_pred EEEeecC-ccHHHHHhhCCCceEEEeCCCC-CCCCCCCceeeHHHHHHH
Confidence 445666 478888874 89999999984 679999999999999865
No 55
>PRK07205 hypothetical protein; Provisional
Probab=99.96 E-value=1.8e-27 Score=216.38 Aligned_cols=241 Identities=16% Similarity=0.143 Sum_probs=164.4
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccc--cCCCC--------------ceEEecCCCCC------
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGG--------------PLYWIDTADKQ------ 59 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~--~~~~d--------------~~~~~e~~~~~------ 59 (283)
++|++.+.+++++|.|+|++|||+|+ .|+..+++..... .+.+| +++..+|++..
T Consensus 129 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~g~~~~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~ 205 (444)
T PRK07205 129 KALLDAGVQFNKRIRFIFGTDEETLW---RCMNRYNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQ 205 (444)
T ss_pred HHHHHcCCCCCCcEEEEEECCcccCc---ccHHHHHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCC
Confidence 56777888889999999999999998 6888888742110 11223 13344444220
Q ss_pred -----ce---------------eccCCc----eeEEEEEeecCCCcCCCCCCCCHHHHHHHHHHHHHhh-----hcCCCC
Q 023343 60 -----PC---------------IGTGGM----IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTR-----FYKDFP 110 (283)
Q Consensus 60 -----i~---------------~~~~G~----~~~~i~v~G~~~Hss~p~~g~nai~~~~~~l~~l~~~-----~~~~~~ 110 (283)
+. +..+|. .+.+|+++|+++|||.|+.|.||+..+++++.++++. ....+.
T Consensus 206 ~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~ 285 (444)
T PRK07205 206 AFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIG 285 (444)
T ss_pred cccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhcC
Confidence 00 011231 2349999999999999999999999999999888642 001110
Q ss_pred CCCc------cccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCC
Q 023343 111 PHPK------EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRG 184 (283)
Q Consensus 111 ~~~~------~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 184 (283)
.... ..........++|++. .|+||++|++.+|+|++|+++.+++.+.+++.+++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~t~nvg~-------~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~~----------- 347 (444)
T PRK07205 286 EDATGLNIFGDIEDEPSGKLSFNIAG-------LTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQEY----------- 347 (444)
T ss_pred CCCccccCCccccCCCcCCceEEeEE-------EEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHc-----------
Confidence 0000 0000001122344433 479999999999999999999999999998876541
Q ss_pred CCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-ceeecCCchhhHhhhhCCCcEEEEc---
Q 023343 185 PVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQDEGFDVQTAG--- 260 (283)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~~~gg~~da~~~~~~g~p~v~~g--- 260 (283)
.++++....++++..++++++++++.+++++.+|.+. ...+.|+ +|++++ .|++.||
T Consensus 348 --------------~v~~~~~~~~~p~~~~~~~~lv~~l~~~~~~~~g~~~~~~~~gg~-~~~~~~----~~~i~~G~~~ 408 (444)
T PRK07205 348 --------------GLTYEEFDYLAPLYVPLDSELVSTLMSVYQEKTGDDSPAQSSGGA-TFARTM----PNCVAFGALF 408 (444)
T ss_pred --------------CcEEEEecCCCceeeCCCcHHHHHHHHHHHHHhCCCCceEEeccH-HHHHhC----CCcEEECCcc
Confidence 1233333456788888999999999999999888653 3445555 466543 4788899
Q ss_pred CCCCccCCCCCcccchhhhhhh
Q 023343 261 YGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 261 ~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
||....+|++||||++++|.++
T Consensus 409 Pg~~~~aH~~nE~v~i~~l~~~ 430 (444)
T PRK07205 409 PGAPQTEHQANEHIVLEDLYRA 430 (444)
T ss_pred CCCCCCCcCcccCccHHHHHHH
Confidence 8766789999999999999875
No 56
>PRK06156 hypothetical protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=220.94 Aligned_cols=246 Identities=14% Similarity=0.146 Sum_probs=170.2
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccC----CCCc-eEEecCCCC----------------C-
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKL----KGGP-LYWIDTADK----------------Q- 59 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~----~~d~-~~~~e~~~~----------------~- 59 (283)
+.|++.+.+++++|.|+|++|||.|+ .|+++++.++...+. +.++ +++.|++.. +
T Consensus 167 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~~~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l 243 (520)
T PRK06156 167 KAIKDSGLPLARRIELLVYTTEETDG---DPLKYYLERYTPPDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEI 243 (520)
T ss_pred HHHHHcCCCCCceEEEEEecccccCc---hhHHHHHHhcCCCCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeE
Confidence 45677787888999999999999998 799999987542111 1111 234444210 0
Q ss_pred --------------------------------------ceeccCCce---------eEEEEEeecCCCcCCCCCCCCHHH
Q 023343 60 --------------------------------------PCIGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLE 92 (283)
Q Consensus 60 --------------------------------------i~~~~~G~~---------~~~i~v~G~~~Hss~p~~g~nai~ 92 (283)
...+++|.+ +++|+++|+++|+|.|+.|.||+.
T Consensus 244 ~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~ 323 (520)
T PRK06156 244 VAMTGGAFANQIPQTAVATLSGGDPAALAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVT 323 (520)
T ss_pred EEEEcCCcCCCCCCccEEEEecCCHHHHHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHH
Confidence 012344655 899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCC--------C--CCCCc--------cccccccCCCcccceEEecCCCccceecCccEEEEEEEeC
Q 023343 93 LAMEALKVIQTRFYKD--------F--PPHPK--------EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLT 154 (283)
Q Consensus 93 ~~~~~l~~l~~~~~~~--------~--~~~~~--------~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~ 154 (283)
.+++++..|++..... + ..... .....+.++.+++++.|. +|. +.|++.+|+|++
T Consensus 324 ~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~-gg~------~~~~l~iDiR~~ 396 (520)
T PRK06156 324 RLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAYKDDFMGPLTLSPTVVG-QDD------KGTEVTVNLRRP 396 (520)
T ss_pred HHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccccCCCccCcEEeeeEEE-EeC------CeEEEEEEeeCC
Confidence 9999999987521100 0 00000 000111223355666666 432 589999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCC
Q 023343 155 PFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV 234 (283)
Q Consensus 155 p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~ 234 (283)
|+++.+++.+.|++.+.+.... .+.++++... ..+++..++++++++.+.+++++++|.+
T Consensus 397 p~~~~eev~~~I~~~i~~~~~~-------------------~gv~ve~~~~-~~~p~~~~~d~~lv~~l~~a~~~~~G~~ 456 (520)
T PRK06156 397 VGKTPELLKGEIADALAAWQAK-------------------HQVALDIDYY-WGEPMVRDPKGPWLKTLLDVFGHFTGLD 456 (520)
T ss_pred CCCCHHHHHHHHHHHHHHHHhh-------------------cCceEEEeec-CCCceeeCCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999988764321 1244444422 2345667789999999999999998865
Q ss_pred -CceeecCCchhhHhhhhCCCcEEEEcCCC---CccCCCCCcccchhhhhhh
Q 023343 235 -NPYSITGTLPLIRELQDEGFDVQTAGYGL---MATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 235 -~~~~~~gg~~da~~~~~~g~p~v~~g~g~---~~~~H~~nE~i~~~~l~~~ 282 (283)
.+..+.|+ +|++++. +++.|||+. ...+|++||||++++|.++
T Consensus 457 ~~~~~~~gg-TDa~~~~----~~v~fGP~~~g~~~~aHt~dE~V~ie~l~~~ 503 (520)
T PRK06156 457 AKPVAIAGS-TNAKLFP----NAVSFGPAMPGVKYTGHTENEFKTVEQFMLD 503 (520)
T ss_pred CceeeecCh-hhhhhCC----ccEEEcCCCCCCCCCCcCcccCCCHHHHHHH
Confidence 45556666 5999875 488999953 2468999999999999875
No 57
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.96 E-value=7e-28 Score=224.77 Aligned_cols=243 Identities=18% Similarity=0.138 Sum_probs=178.5
Q ss_pred CcccccccCCCceeEEEEEEeccccC-----CCCCcCHHHH--------HHc----cc-------cccC-----------
Q 023343 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDAL--------VKD----GL-------LNKL----------- 45 (283)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~l--------~~~----~~-------~~~~----------- 45 (283)
++.|++.+.+++++|.|++.++||.+ . .|++.+ ++. +. ..++
T Consensus 282 ~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~ 358 (591)
T PRK13590 282 VRELHRQGRRLPFGLEVVGFAEEEGQRYKATF---LGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCccccCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 46788999888999999999999973 3 566653 220 00 0001
Q ss_pred --CCCceEE--ecCC--------CCCceeccCCceeEEEEEeecCCCcCC-CC-CCCCHHHHHHHHHHHHHhhhcCCCCC
Q 023343 46 --KGGPLYW--IDTA--------DKQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPP 111 (283)
Q Consensus 46 --~~d~~~~--~e~~--------~~~i~~~~~G~~~~~i~v~G~~~Hss~-p~-~g~nai~~~~~~l~~l~~~~~~~~~~ 111 (283)
+++..+= +|++ ...++++.+|..+++|+++|+++|+|. |. .+.||+..+++++..+++.... .
T Consensus 359 ~~~~~a~~ElHiEqg~~Le~~~~~~gvV~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~--~- 435 (591)
T PRK13590 359 PARYLGFVEVHIEQGPVLNELDLPLGIVTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ--D- 435 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCceEEEeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc--C-
Confidence 1112222 3433 234678999999999999999999996 43 3689999999999999875321 1
Q ss_pred CCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCccccc
Q 023343 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (283)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 191 (283)
...+.+++.|+..|+..|+||++|++.+|+|++++++.+.+.+.+++.++.+.+.
T Consensus 436 ----------~~~v~tVG~i~~~Gg~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~--------------- 490 (591)
T PRK13590 436 ----------GDSVGTVGMLEVPGGSINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICER--------------- 490 (591)
T ss_pred ----------CCcEEEEEEEEECCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 1235688888754678999999999999999999888888888888888776532
Q ss_pred CCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-ceeecCCchhhHhhhhCCCcEEEEcCCC-CccCCC
Q 023343 192 PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQDEGFDVQTAGYGL-MATYHA 269 (283)
Q Consensus 192 ~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~~~gg~~da~~~~~~g~p~v~~g~g~-~~~~H~ 269 (283)
+++.++++.....|+ +..|.++++.+.+++++ .|... ...+.|| +|+.++...+.++++||||. .+.+|+
T Consensus 491 ----~g~~vei~~~~~~~~--~~~d~~lv~~~~~aa~~-~G~~~~~~~sggg-~Da~~~a~~~p~~mifgpg~~~g~sH~ 562 (591)
T PRK13590 491 ----RGLRYTLEETMRAAA--APSAPAWQQRWEAAVAA-LGLPLFRMPSGAG-HDAMKLHEIMPQAMLFVRGENAGISHN 562 (591)
T ss_pred ----cCCeEEEEEeecCCC--cCCCHHHHHHHHHHHHH-cCCCcccCCcchh-HHHHHHHHHCCEEEEEEeeCCCCCCCC
Confidence 235666665544454 45778899999999987 46443 3445667 59999988877788999986 467999
Q ss_pred CCcccchhhhhhh
Q 023343 270 DNEYCLLSDIRLT 282 (283)
Q Consensus 270 ~nE~i~~~~l~~~ 282 (283)
+|||+++++|..+
T Consensus 563 p~E~v~~edL~~g 575 (591)
T PRK13590 563 PLESSTADDMQLA 575 (591)
T ss_pred CccCCCHHHHHHH
Confidence 9999999999764
No 58
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.96 E-value=1.5e-27 Score=217.32 Aligned_cols=250 Identities=16% Similarity=0.162 Sum_probs=177.5
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC-CCceecc----------------
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGT---------------- 64 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~-~~i~~~~---------------- 64 (283)
.+|++.+. .+++|.|+|++|||+|+ .|++.+... . .+++++|+.||+. +.++.++
T Consensus 125 ~~l~~~~~-~~~~i~~l~t~dEE~G~---~ga~~l~~~-~---~~~~~~i~~e~~~~g~l~~g~~G~~~~~~~~~~~r~~ 196 (485)
T PRK15026 125 AVLADENV-VHGPLEVLLTMTEEAGM---DGAFGLQSN-W---LQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREA 196 (485)
T ss_pred HHHHhCCC-CCCCEEEEEEcccccCc---HhHHHhhhc-c---CCcCEEEEeCCCCCCeEEEeCCCcceEEEEEEEEEEe
Confidence 34555554 37899999999999998 799998652 2 3578999999874 5666555
Q ss_pred --CCceeEEEEEee-cCCCcC-CCCCCC-CHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccc
Q 023343 65 --GGMIPWKLHVTG-KLFHSG-LPHKAI-NPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGIN 139 (283)
Q Consensus 65 --~G~~~~~i~v~G-~~~Hss-~p~~g~-nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~n 139 (283)
+|...++|+++| +++||+ .|+.|. ||+..|+++|.++.. ..+++++.|+ ||.+.|
T Consensus 197 ~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~~-------------------~~~~~v~~i~-GG~~~N 256 (485)
T PRK15026 197 VPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE-------------------ELDLRLIDFN-GGTLRN 256 (485)
T ss_pred cCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhHh-------------------hCCeEEEEEe-CCCccC
Confidence 466789999999 999999 699999 999999999998531 1467899999 999999
Q ss_pred eecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhh------------------------------h-------hhccc
Q 023343 140 QIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN------------------------------I-------EKLDT 182 (283)
Q Consensus 140 viP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~------------------------------~-------~~~~~ 182 (283)
+||++|++.+++|.......+.+.+.+.+.+.+..+. + -.+..
T Consensus 257 aIp~~a~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Gv~~~s~ 336 (485)
T PRK15026 257 AIPREAFATIAVAADKVDALKSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSD 336 (485)
T ss_pred CCCCCcEEEEEEChhHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEEccccccccCHHHHHHHHHHHHHCCcccEEecc
Confidence 9999999999999765333344444443333321100 0 00000
Q ss_pred CCC------------------Cc--c-cccCCCC-------------cceeEEEEEcCCCCccccCCCCHHHHHHHHHHH
Q 023343 183 RGP------------------VS--K-YVLPDEN-------------IRGSLTLTFDEATNGVACNLDSRGFHVLCKATE 228 (283)
Q Consensus 183 ~~~------------------~~--~-~~~~~~~-------------~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~ 228 (283)
..+ +. . ...|... -....+++....+|+|..++|+|+++.+.++++
T Consensus 337 ~~~g~v~~S~Nlg~v~~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~~g~~~~~~~~~p~w~~~~ds~lv~~l~~~y~ 416 (485)
T PRK15026 337 VAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQ 416 (485)
T ss_pred CCCCeEEeeeEEEEEEEeCCEEEEEEEecCCCchHHHHHHHHHHHHHHHcCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Confidence 000 00 0 0000000 001234566667999999999999999999999
Q ss_pred HHhCCCC-ceeecCCchhhHhhhh--CCCcEEEEcCCCCccCCCCCcccchhhhhh
Q 023343 229 EVVGHVN-PYSITGTLPLIRELQD--EGFDVQTAGYGLMATYHADNEYCLLSDIRL 281 (283)
Q Consensus 229 ~~~g~~~-~~~~~gg~~da~~~~~--~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~ 281 (283)
+++|+++ +..+.||+ |+..|.+ .++|++.|||.. ..+|+|||+++++++..
T Consensus 417 e~~G~~~~~~~ihagl-EcG~~~~~~p~i~~VsfGP~~-~~~HspdE~v~I~s~~~ 470 (485)
T PRK15026 417 RLFNKTPNIQIIHAGL-ECGLFKKPYPEMDMVSIGPTI-TGPHSPDEQVHIESVGH 470 (485)
T ss_pred HHHCCCCeEEEEEEEe-hHHHHHhhCCCCCEEEECCCC-CCCCCCCcEEEhHHHHH
Confidence 9999764 45677886 6666664 499999999984 56999999999998854
No 59
>PRK08554 peptidase; Reviewed
Probab=99.96 E-value=2.1e-27 Score=214.78 Aligned_cols=244 Identities=18% Similarity=0.156 Sum_probs=165.4
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCCCCceeccCCceeEEEEE-------
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHV------- 74 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~~~i~~~~~G~~~~~i~v------- 74 (283)
+.|++. .++++|.|+|++|||+|+ .+..++++........+|++|+.||+...+++++++.+++++++
T Consensus 116 ~~l~~~--~~~~~i~l~~~~dEE~g~---~~~~~~~~~~~~~~~~~~~~iv~Ept~~~~~~~~~kg~~~~~~~~~~~~~~ 190 (438)
T PRK08554 116 KELSKE--PLNGKVIFAFTGDEEIGG---AMAMHIAEKLREEGKLPKYMINADGIGMKPIIRRRKGFGVTIRVPSEKVKV 190 (438)
T ss_pred HHHHhc--CCCCCEEEEEEcccccCc---cccHHHHHHHHhcCCCCCEEEEeCCCCCcchhhcCCceEEEEEeccccccc
Confidence 344443 367899999999999987 45557766543233467899999999887665555555566654
Q ss_pred eec--------------CCCcCCCCCCCC--HHHHHHHHHHHHHhhhc---CCCCCCCccccccccCCCcccceEEec-C
Q 023343 75 TGK--------------LFHSGLPHKAIN--PLELAMEALKVIQTRFY---KDFPPHPKEQVYGFETPSTMKPTQWSY-P 134 (283)
Q Consensus 75 ~G~--------------~~Hss~p~~g~n--ai~~~~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~-~ 134 (283)
+|+ .+|+|.+..|.| ++..+++++.++..... ..+... . ..+..++++.+.. +
T Consensus 191 ~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~------~-~~~~~~~~~~~~p~~ 263 (438)
T PRK08554 191 KGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNVLAVSLEGKFLKG------N-VVPGEVTLTYLEPGE 263 (438)
T ss_pred ccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCceEEEEeeeeeec------C-cccceeEEEEecCCC
Confidence 444 599998766665 57888887776653210 000000 0 0001111111110 1
Q ss_pred -----------------------------------CCcccee---cCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhh
Q 023343 135 -----------------------------------GGGINQI---PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (283)
Q Consensus 135 -----------------------------------g~~~nvi---P~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~ 176 (283)
....|++ |++|++.+|+|+.| ++.+++.+.|++.++....
T Consensus 264 g~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~- 341 (438)
T PRK08554 264 GEEVEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNVYSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLP- 341 (438)
T ss_pred CccccccccHHHHHHHHHHHHHHhhccccccccceeeccceEEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCC-
Confidence 1145565 99999999999988 6888888888777754210
Q ss_pred hhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCC-CceeecCCchhhHhhhhCCCc
Q 023343 177 IEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFD 255 (283)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~-~~~~~~gg~~da~~~~~~g~p 255 (283)
+.+++++.....|+..+++++++++++++++++ .|.+ .+....|+ +|+++|...|+|
T Consensus 342 --------------------~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~~~-~g~~~~~~~~~Gg-tDa~~~~~~Gip 399 (438)
T PRK08554 342 --------------------EAEVEIRTNEKAGYLFTPPDEEIVKVALRVLKE-LGEDAEPVEGPGA-SDSRYFTPYGVK 399 (438)
T ss_pred --------------------CceEEEEeccCCCCcCCCCChHHHHHHHHHHHH-hCCCcEEEecCCc-hHHHHHHhcCCC
Confidence 245566655455777778899999999999988 5754 44556666 699999989999
Q ss_pred EEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 256 VQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 256 ~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
++.|||+. .++|++|||+++++|.++
T Consensus 400 ~v~~Gp~~-~~~H~~~E~v~i~~l~~~ 425 (438)
T PRK08554 400 AIDFGPKG-GNIHGPNEYVEIDSLKKM 425 (438)
T ss_pred ceEECCCC-CCCCCCcceEEHHHHHHH
Confidence 99999974 589999999999999875
No 60
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.96 E-value=6.4e-28 Score=206.19 Aligned_cols=253 Identities=17% Similarity=0.185 Sum_probs=187.3
Q ss_pred CcccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecC--CC---CCceeccCCceeEEEEEe
Q 023343 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT--AD---KQPCIGTGGMIPWKLHVT 75 (283)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~--~~---~~i~~~~~G~~~~~i~v~ 75 (283)
|+.|+..|.++.++|.+.|++|||+|+. .|++.+.+...+.++.. +.+.-|+ +. ..+.+++||.++++|++.
T Consensus 141 ir~L~~~g~kp~Rti~lsfvpDEEi~G~--~Gm~~fa~~~~~~~l~~-~filDEG~~se~d~~~vfyaEkg~w~~~v~~~ 217 (420)
T KOG2275|consen 141 IRNLKASGFKPKRTIHLSFVPDEEIGGH--IGMKEFAKTEEFKKLNL-GFILDEGGATENDFATVFYAEKGPWWLKVTAN 217 (420)
T ss_pred HHHHHhcCCCcCceEEEEecCchhccCc--chHHHHhhhhhhcccce-eEEecCCCCCcccceeEEEEeeceeEEEEEec
Confidence 3567888999999999999999999873 79999988544444432 3334444 22 246789999999999999
Q ss_pred ecCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCC
Q 023343 76 GKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTP 155 (283)
Q Consensus 76 G~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p 155 (283)
|.++|||.|.. ..|+.++.++++++.+...+................+|+|++.|+ ||.+.|++|.+.++.+|+|+.|
T Consensus 218 G~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~~~~vtT~Nv~~i~-GGv~~N~~P~~~ea~~dirv~~ 295 (420)
T KOG2275|consen 218 GTPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLASGPKLALGDVTTINVGIIN-GGVQSNVLPETFEAAFDIRVRP 295 (420)
T ss_pred CCCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhcCCceeccceeEEeeeeee-cccccCcCchhheeeeeeEecc
Confidence 99999998543 478999999999888764221110000112233346899999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHH-HHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcC----CCCcc-ccCCCCHHHHHHHHHHHH
Q 023343 156 FYNVTDVMKRLQ-EYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE----ATNGV-ACNLDSRGFHVLCKATEE 229 (283)
Q Consensus 156 ~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~-~~~~d~~~~~~l~~~~~~ 229 (283)
..+..++.+++. +...+. +..++++... .+++. ..+.++|++..+..++++
T Consensus 296 ~~d~~~i~~~l~~~w~~~~-----------------------~eg~t~~f~~~~~~~~~~~t~~~~s~p~w~~~~~a~~~ 352 (420)
T KOG2275|consen 296 HVDVKAIRDQLEDEWAEEA-----------------------GEGVTLEFSQKVILDYPPVTPTDDSNPFWTAFAGALKD 352 (420)
T ss_pred CCCHHHHHHHHHHHhhhhc-----------------------CCceEEeccCcccCCCCCCCCCCCCChHHHHHHHHHHH
Confidence 999888888884 333321 1223334332 23333 344568999999999999
Q ss_pred HhCCCCceeecCCchhhHhhhhCCCcEEEEcCCC--CccCCCCCcccchhhhhhh
Q 023343 230 VVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGL--MATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 230 ~~g~~~~~~~~gg~~da~~~~~~g~p~v~~g~g~--~~~~H~~nE~i~~~~l~~~ 282 (283)
..++-.+....|+ +|+|++++.|+|+..|.|+. ....|..||++..+-+.+.
T Consensus 353 ~~~k~~~~i~~gs-tdsr~~rn~gvp~~~fsp~~nt~~~~H~hnE~l~~~~~l~g 406 (420)
T KOG2275|consen 353 EGGKGYPEIGPGS-TDSRHIRNEGVPAIGFSPIINTPMLLHDHNEFLNEKVFLRG 406 (420)
T ss_pred hcCccceeecccc-cccchhhhcCcchhcccccccccceecchhhhhCchhhhhh
Confidence 8887776666666 59999999999999998875 3578999999988876654
No 61
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.95 E-value=3.1e-27 Score=220.32 Aligned_cols=245 Identities=17% Similarity=0.134 Sum_probs=179.7
Q ss_pred CcccccccCCCceeEEEEEEecccc-----CCCCCcCHHHHHH------------ccc-------cccC-----------
Q 023343 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALVK------------DGL-------LNKL----------- 45 (283)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~-----g~~~~~G~~~l~~------------~~~-------~~~~----------- 45 (283)
++.|++.+.+++++|.|+..++||+ +. .|++.+.- +|. ..++
T Consensus 282 ~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~ 358 (591)
T PRK13799 282 VKELHEQGERLPFHFEVIAFAEEEGQRFKATF---LGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCCccCCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 4678899999999999999999997 33 57777761 121 0000
Q ss_pred --CCCceEEecCCCC----------CceeccCCceeEEEEEeecCCCcCC-C-CCCCCHHHHHHHHHHHHHhhhcCCCCC
Q 023343 46 --KGGPLYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSGL-P-HKAINPLELAMEALKVIQTRFYKDFPP 111 (283)
Q Consensus 46 --~~d~~~~~e~~~~----------~i~~~~~G~~~~~i~v~G~~~Hss~-p-~~g~nai~~~~~~l~~l~~~~~~~~~~ 111 (283)
+++..+=.|..++ .++++.+|..+++|+++|+++|+|. | +.+.||+..+++++..++++..+. +
T Consensus 359 ~~~~~a~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--~ 436 (591)
T PRK13799 359 PADVLGFIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--Q 436 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc--C
Confidence 1112222333333 3567999999999999999999996 4 458999999999999998864321 1
Q ss_pred CCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCccccc
Q 023343 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (283)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 191 (283)
. ...+++++.|+.++++.|+||++|++.+|+|++|+++.+.+.+++++.++.+++.
T Consensus 437 ~---------~~~v~tVG~I~~~~ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~--------------- 492 (591)
T PRK13799 437 H---------ASLVATMGQLNVPSGSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAAR--------------- 492 (591)
T ss_pred C---------CCcEEEEEEEEecCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 0 1246788899854568999999999999999999888888888888888776543
Q ss_pred CCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-ceeecCCchhhHhhhhCCCcEEEEcCC-CCccCCC
Q 023343 192 PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQDEGFDVQTAGYG-LMATYHA 269 (283)
Q Consensus 192 ~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~~~gg~~da~~~~~~g~p~v~~g~g-~~~~~H~ 269 (283)
+++.++++.....|+ +..|.++++.+.+++++ .|... ...+.|| +|+.+|.+.+.++++|+|+ ..+.+|+
T Consensus 493 ----~g~~~ei~~~~~~~~--~~~d~~lv~~~~~a~~~-~G~~~~~~~sgag-~Da~~~a~~~p~amif~~~g~~g~sHs 564 (591)
T PRK13799 493 ----RGIEYKAELAMKAAA--APCAPELMKQLEAATDA-AGVPLFELASGAG-HDAMKIAEIMDQAMLFTRCGNAGISHN 564 (591)
T ss_pred ----hCCeEEEEEEecCCC--cCCCHHHHHHHHHHHHH-cCCCceecCcchH-HHHHHHHhhCCEEEEEEecCCCCCCCC
Confidence 134556665544555 44677899999988876 56443 3345666 5999999988888999875 3467899
Q ss_pred CCcccchhhhhhh
Q 023343 270 DNEYCLLSDIRLT 282 (283)
Q Consensus 270 ~nE~i~~~~l~~~ 282 (283)
+|||+++++|..+
T Consensus 565 p~E~v~~edL~~g 577 (591)
T PRK13799 565 PLESMTADDMELS 577 (591)
T ss_pred ccccCCHHHHHHH
Confidence 9999999999764
No 62
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.95 E-value=3.6e-27 Score=213.65 Aligned_cols=241 Identities=18% Similarity=0.153 Sum_probs=166.5
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccc--cCCCCc---eEEecC---------------------
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDT--------------------- 55 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~--~~~~d~---~~~~e~--------------------- 55 (283)
+.|++.+.+++++|.|+|++|||.|+ .|+.+++++.... .+.+|. +++.++
T Consensus 119 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~ 195 (447)
T TIGR01887 119 KILKELGLKLKKKIRFIFGTDEETGW---ACIDYYFEHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLES 195 (447)
T ss_pred HHHHHcCCCCCCcEEEEEECCcccCc---HhHHHHHHhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEE
Confidence 46777787889999999999999998 7999988764311 112233 444343
Q ss_pred ------CCCC-----ceeccC-------------------Cce-----eEEEEEeecCCCcCCCCCCCCHHHHHHHHHHH
Q 023343 56 ------ADKQ-----PCIGTG-------------------GMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEALKV 100 (283)
Q Consensus 56 ------~~~~-----i~~~~~-------------------G~~-----~~~i~v~G~~~Hss~p~~g~nai~~~~~~l~~ 100 (283)
++.. .+++++ |.. +++|+++|+++|||.|+.|.||+..|++++..
T Consensus 196 ~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~ 275 (447)
T TIGR01887 196 FKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQ 275 (447)
T ss_pred EeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHh
Confidence 2222 244554 777 79999999999999999999999999999999
Q ss_pred HH--hhhcC-------CCC-----CCC-ccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHH
Q 023343 101 IQ--TRFYK-------DFP-----PHP-KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKR 165 (283)
Q Consensus 101 l~--~~~~~-------~~~-----~~~-~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~ 165 (283)
+. +...+ .+. ... ........+..++|++.|+ ++ +|+.|++.+|+|++|+++.++++++
T Consensus 276 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~nvg~I~-~g-----~p~~~~~~~d~R~~p~~~~e~~~~~ 349 (447)
T TIGR01887 276 LNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMNVGVID-YE-----NAEAGLIGLNVRYPVGNDPDTMLKN 349 (447)
T ss_pred ccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEEEEEEE-Ee-----CCcEEEEEEEEecCCCCCHHHHHHH
Confidence 86 21100 000 000 0000011234578888888 54 3899999999999999998877777
Q ss_pred HHHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCC-ceeecCCch
Q 023343 166 LQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLP 244 (283)
Q Consensus 166 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~-~~~~~gg~~ 244 (283)
+.+.+.. ..++......+|+..++++|+++++.+++++++|.++ +....|+ +
T Consensus 350 i~~~~~~--------------------------~~~~~~~~~~~p~~~~~~~~lv~~l~~~~~~~~g~~~~~~~~~gg-t 402 (447)
T TIGR01887 350 ELAKESG--------------------------IVEVTENGYLKPLYVPKDDPLVQTLMKVYEKQTGDEGTPVAIGGG-T 402 (447)
T ss_pred HHHHhhC--------------------------cEEEEEccCCCCeEECCCCHHHHHHHHHHHHHhCCCCCeeEecch-h
Confidence 6643221 1122222234555568899999999999999988754 4446666 4
Q ss_pred hhHhhhhCCCcEEEEcC---CCCccCCCCCcccchhhhhhh
Q 023343 245 LIRELQDEGFDVQTAGY---GLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 245 da~~~~~~g~p~v~~g~---g~~~~~H~~nE~i~~~~l~~~ 282 (283)
|++++. +++.||| |...++|++||||++++|..+
T Consensus 403 da~~~~----~~i~~Gp~~pG~~~~aH~~dE~v~i~~l~~~ 439 (447)
T TIGR01887 403 YARLME----NGVAFGALFPGEEDTMHQANEYIMIDDLLLA 439 (447)
T ss_pred hhhhCC----CcEEeCCCCCCCCCCccCCCcceeHHHHHHH
Confidence 888764 3577885 545679999999999999875
No 63
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.93 E-value=5e-24 Score=180.92 Aligned_cols=260 Identities=21% Similarity=0.308 Sum_probs=195.8
Q ss_pred CcccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHcc---ccccCCCCceEEecC---CCCCc--eeccCCceeEEE
Q 023343 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDG---LLNKLKGGPLYWIDT---ADKQP--CIGTGGMIPWKL 72 (283)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~---~~~~~~~d~~~~~e~---~~~~i--~~~~~G~~~~~i 72 (283)
+++|+++|..++.||+|+|.+.||+|+ .|...+++.. ++. +.|++.+.+. +..++ .+|.||.+.+.|
T Consensus 144 v~a~~~~g~~lpvnv~f~~EgmEEsgS---~~L~~l~~~~kD~~~~--~vD~vciSdnyWlg~kkPcltyGlRG~~yf~i 218 (473)
T KOG2276|consen 144 VKALQQLGIDLPVNVVFVFEGMEESGS---EGLDELIEKEKDKFFK--DVDFVCISDNYWLGTKKPCLTYGLRGVIYFQI 218 (473)
T ss_pred HHHHHHhCccccceEEEEEEechhccC---ccHHHHHHHHhhhhhc--cCCEEEeeCceeccCCCcccccccccceeEEE
Confidence 468899999999999999999999999 6888888753 233 3567776653 12344 479999999999
Q ss_pred EEee--cCCCcCCC-CCCCCHHHHHHHHHHHHHhh--------hcCCCCCCCccc---------------------cccc
Q 023343 73 HVTG--KLFHSGLP-HKAINPLELAMEALKVIQTR--------FYKDFPPHPKEQ---------------------VYGF 120 (283)
Q Consensus 73 ~v~G--~~~Hss~p-~~g~nai~~~~~~l~~l~~~--------~~~~~~~~~~~~---------------------~~~~ 120 (283)
+|.| +..||+.. ..-.-|+..|..++..|.+. +++.++|..++. ...+
T Consensus 219 ~v~g~~~DlHSGvfGG~~hE~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~ 298 (473)
T KOG2276|consen 219 EVEGPSKDLHSGVFGGVVHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPT 298 (473)
T ss_pred EEeecccccccccccchhHHHHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhcccccccccc
Confidence 9999 67999953 22245777777777776543 122333322110 0111
Q ss_pred c---------CC-CcccceEEe---cCCCccceecCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhhcccCCCCc
Q 023343 121 E---------TP-STMKPTQWS---YPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVS 187 (283)
Q Consensus 121 ~---------~~-~~~~~~~i~---~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 187 (283)
. +. .++++..|. .+.+...|||.++...|.+|++|+++++.+.+.+.++++...++..
T Consensus 299 ~~k~~~l~~rWryPSLsihgIeGaFs~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~n--------- 369 (473)
T KOG2276|consen 299 DDKKRILMHRWRYPSLSIHGIEGAFSGPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELN--------- 369 (473)
T ss_pred CchHHHhhhhcccCccceecccceeeCCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcC---------
Confidence 1 10 133333333 1667889999999999999999999999999999999988765422
Q ss_pred ccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCc-hhhHhhhhC-CCcEEEEcCCC-C
Q 023343 188 KYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTL-PLIRELQDE-GFDVQTAGYGL-M 264 (283)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~-~da~~~~~~-g~p~v~~g~g~-~ 264 (283)
+| .+++++......+|..+++++-+.++++++++++|.++.+...||+ +..+-|+.. |-+++.++.|. +
T Consensus 370 ---S~-----N~l~~~~~~~~~~Wv~d~~~~~y~a~krA~~~v~gvePd~~ReGgSIPvt~tfQ~~~~~~V~llP~G~~d 441 (473)
T KOG2276|consen 370 ---SP-----NKLKVSMGHAGAPWVSDPDDPHYLALKRAIETVYGVEPDFTREGGSIPVTLTFQDITGKSVLLLPYGASD 441 (473)
T ss_pred ---CC-----CceEEeecCCCCceecCCCchhHHHHHHHHHHhhCCCCCccccCCccceehHHHHHhCCCeEEecccccc
Confidence 33 3778888888888999999999999999999999999999988876 677778885 99999887775 6
Q ss_pred ccCCCCCcccchhhhhhh
Q 023343 265 ATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 265 ~~~H~~nE~i~~~~l~~~ 282 (283)
+++|+.||++.+.++.+.
T Consensus 442 D~aHsqNEkl~i~N~~~G 459 (473)
T KOG2276|consen 442 DGAHSQNEKLNITNYVEG 459 (473)
T ss_pred cchhhhcccccHHHHhhh
Confidence 789999999999988753
No 64
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.82 E-value=4.4e-20 Score=162.54 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=184.7
Q ss_pred CCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC-CCceeccCCceeEEEEEeecCCCcCC-CCC
Q 023343 9 LKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGTGGMIPWKLHVTGKLFHSGL-PHK 86 (283)
Q Consensus 9 ~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~-~~i~~~~~G~~~~~i~v~G~~~Hss~-p~~ 86 (283)
.-+.++|.+.|+++||.|+ .|+..+.-. ++.+++.+..+++. +.+.+...+...+++++.|+..|++. +..
T Consensus 165 ~i~h~~i~~g~s~~Ee~g~---rg~~~~~~a----~f~a~~ay~iDGg~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~~~ 237 (414)
T COG2195 165 EIPHGGIRGGFSPDEEIGG---RGAANKDVA----RFLADFAYTLDGGPVGEIPREAFNAAAVRATIVGPNVHPGSAKGK 237 (414)
T ss_pred cccccCeEEEecchHHhhh---hhhhhccHH----hhhcceeEecCCCccCeeeeeccchheeeeeeeccCcCccchHHH
Confidence 4578999999999999997 587776543 23567788887443 57788899999999999999999985 677
Q ss_pred CCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccceecCccEEEEEEEeCCCCCHHHHHHHH
Q 023343 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (283)
Q Consensus 87 g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nviP~~~~~~~~~R~~p~~~~~~~~~~i 166 (283)
.+||+..+.++...+... ..+. .++...|..+ .+...|.|.+++.....+|...........+.+
T Consensus 238 ~i~a~~~a~e~~~~~~~~---~~~e-----------~t~~~~Gv~~-~~~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~ 302 (414)
T COG2195 238 MINALLLAAEFILELPLE---EVPE-----------LTEGPEGVYH-LGDSTNSVEETSLNLAIIRDFDNLLFRARKDSM 302 (414)
T ss_pred HhhHHHhhhhhhhcCCcc---cccc-----------cccccceEEe-ccccccchhhhhhhhhhhhhcchhHHHHhHHHH
Confidence 789988888888765331 2111 2455677777 888899999999999999999876666666666
Q ss_pred HHHHHHhhhhhhhcccCCCCcccccCCCCcceeEEEEEcCCCCccccCCCCHHHHHHHHHHHHHhCCCCceeecCCchhh
Q 023343 167 QEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLI 246 (283)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~~~~~~~g~~~~~~~~gg~~da 246 (283)
++.+.+..++.. ....++++....||.|...++++++.+++++++++++++....+.||+ |+
T Consensus 303 ~~~~~~~~~~~g-----------------~~~~~~~~~~~~Yp~~~~~~~~~iv~~a~~a~~~l~~~p~v~~i~gGt-d~ 364 (414)
T COG2195 303 KDVVEEMAASLG-----------------KLAGAELEVKDSYPGWKIKPDSPLVDLAKKAYKELGIKPKVKPIHGGT-DG 364 (414)
T ss_pred HHHHHHHHHHhh-----------------hccceEEEEeccccCcCCCCCchHHHHHHHHHHHhCCCceEEEeeccc-ch
Confidence 666666554421 015677888899999999999999999999999998887666788996 78
Q ss_pred HhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 247 RELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 247 ~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
..+...|+|+..++.|+..+.|+++|||+++++.++
T Consensus 365 ~~is~~g~p~~~i~~Gp~~n~Hs~~E~v~I~s~ek~ 400 (414)
T COG2195 365 GVLSFKGLPTPNISTGPGENPHSPDEFVSIESMEKA 400 (414)
T ss_pred hhhhccCCCCceEecccccCCCCccceeehHHHHHH
Confidence 888888999888877766799999999999998764
No 65
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.76 E-value=1.6e-18 Score=127.69 Aligned_cols=109 Identities=27% Similarity=0.375 Sum_probs=91.5
Q ss_pred eccCCceeEEEEEeecCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCcccee
Q 023343 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQI 141 (283)
Q Consensus 62 ~~~~G~~~~~i~v~G~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nvi 141 (283)
++++|.++++|+++|+++|+|.|+.|+||+..|+++++.|++...+.... ....+..+.+++++.|+ +|...|+|
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~-gG~~~n~i 75 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFR----PEEFFPGPPTLNIGSIE-GGTAPNVI 75 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTST----HHHCTCTSEEEEEEEEE-EESSTTEE
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccc----cccccccccceeEeecc-cCCcCCEE
Confidence 57899999999999999999999999999999999999999864321100 00112234688999999 88899999
Q ss_pred cCccEEEEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 023343 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (283)
Q Consensus 142 P~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~~~ 175 (283)
|++|++.+++|++|+++.+++.+.|++.+++..+
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~~~ 109 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEKIAK 109 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999987653
No 66
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.38 E-value=5.3e-13 Score=107.46 Aligned_cols=65 Identities=25% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHhC-CCCceeecCCchhhHhhh---hCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 216 DSRGFHVLCKATEEVVG-HVNPYSITGTLPLIRELQ---DEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 216 d~~~~~~l~~~~~~~~g-~~~~~~~~gg~~da~~~~---~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
+.++++.+.+++++.++ ...+..+.|++ |++++. ..++|++.|||+. .++|++||++++++|.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-D~~~~~~~~~~~~~~i~~G~~~-~~~H~~~E~i~~~~l~~~ 179 (189)
T PF01546_consen 111 DPPLVQALQAAAQEVGGEPPEPVASGGGT-DAGFLAEVKGLGIPAIGFGPGG-SNAHTPDEYIDIEDLVKG 179 (189)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEESSSS-THHHHHCHHHTTEEEEEEESCE-ESTTSTT-EEEHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccccccceeccc-cchhhhhhhccccceeeeCCCC-CCCCCCCcEecHHHHHHH
Confidence 45689999999999877 34555667774 899888 4699999999995 899999999999999865
No 67
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.57 E-value=1.9e-07 Score=81.53 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=103.3
Q ss_pred CCCceeEEEEEEeccccCCCCCcCHHHHHHcc--ccccCCCC--ceEEecCC-------CCC-ceeccCCceeEEEEEee
Q 023343 9 LKLKSTVIAVFIASEENSAITGVGVDALVKDG--LLNKLKGG--PLYWIDTA-------DKQ-PCIGTGGMIPWKLHVTG 76 (283)
Q Consensus 9 ~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~--~~~~~~~d--~~~~~e~~-------~~~-i~~~~~G~~~~~i~v~G 76 (283)
....|||.|+.++|||.-+ .|++..+... +.++.+.+ .+|..|+. +++ +++|..|.+-.-.-|.|
T Consensus 159 ~~~~GNlLf~a~pdEE~~s---~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG 235 (553)
T COG4187 159 TDRQGNLLFMAVPDEEVES---RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVG 235 (553)
T ss_pred CCCCCcEEEEeccchhhhc---ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEe
Confidence 4789999999999999988 6888776643 22222333 44544432 334 45799999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCccccccccCCCcccceEEecCCCccce-ecCccEEEEEEEeCC
Q 023343 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQ-IPGECTVSGDVRLTP 155 (283)
Q Consensus 77 ~~~Hss~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~nv-iP~~~~~~~~~R~~p 155 (283)
+..|+|.|..|+||...++.++.+|+... .+ .+...+.--.+|+.+ .-+.-....|| .|..+.+.||+-+.
T Consensus 236 ~etHvG~~f~Gvnan~maSei~~~le~N~--~l--~dr~~Ge~t~PPs~L---~qkDlKe~Y~VqTp~~a~~~fN~l~h- 307 (553)
T COG4187 236 CETHVGYPFEGVNANFMASEITRRLELNA--DL--ADRVDGEITPPPSCL---EQKDLKESYNVQTPERAWLYFNWLYH- 307 (553)
T ss_pred eccccCCcccCCCHHHHHHHHHHHhhcCh--hh--hhhhCCeeCCCcHhh---hhhhhhhhccccCcchhhhhheehhh-
Confidence 99999999999999999999999886421 11 000011111122222 11113345666 78899999999666
Q ss_pred CCCHHHHHHHHHHHHHH
Q 023343 156 FYNVTDVMKRLQEYVDD 172 (283)
Q Consensus 156 ~~~~~~~~~~i~~~l~~ 172 (283)
+.+..++.+.+++..++
T Consensus 308 ~~ta~~~~d~l~~~a~~ 324 (553)
T COG4187 308 SRTAKELFDRLKEEAET 324 (553)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 67788887777766554
No 68
>PRK09961 exoaminopeptidase; Provisional
Probab=97.35 E-value=0.00027 Score=62.23 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCce--eecCCchhhHhhhh--CCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 215 LDSRGFHVLCKATEEVVGHVNPY--SITGTLPLIRELQD--EGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 215 ~d~~~~~~l~~~~~~~~g~~~~~--~~~gg~~da~~~~~--~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.+.++++.+.+++++. +-+... ...|| +|+..+.. .|+|++.+||+ ...+|+++|+++++|+.++
T Consensus 254 ~~~~l~~~l~~~A~~~-~Ip~Q~~~~~ggG-TDa~~~~~~~~Giptv~ig~p-~ry~Hs~~E~v~~~D~~~~ 322 (344)
T PRK09961 254 APPKLTAWIETVAAEI-GIPLQADMFSNGG-TDGGAVHLTGTGVPTVVMGPA-TRHGHCAASIADCRDILQM 322 (344)
T ss_pred CCHHHHHHHHHHHHHc-CCCcEEEecCCCc-chHHHHHHhCCCCCEEEechh-hhcccChhheEEHHHHHHH
Confidence 4678999999999886 444433 23456 48886665 69999999998 4489999999999999875
No 69
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=96.74 E-value=0.0021 Score=56.63 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCce-eecCCchhhH--hhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 215 LDSRGFHVLCKATEEVVGHVNPY-SITGTLPLIR--ELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 215 ~d~~~~~~l~~~~~~~~g~~~~~-~~~gg~~da~--~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.+..+.+.+.+++++. +-+..+ .+.||| |+. .+...|+|++.+|.+ .-.+|++.|.++++|+.++
T Consensus 263 ~~~~l~~~l~~~A~~~-~I~~Q~~~~~gGt-Da~~~~~~~~Gvpt~~i~ip-~Ry~Hs~~e~i~~~D~~~~ 330 (350)
T TIGR03107 263 MLPRMKDFLLTTAEEA-GIKYQYYVAKGGT-DAGAAHLKNSGVPSTTIGVC-ARYIHSHQTLYSIDDFLAA 330 (350)
T ss_pred CCHHHHHHHHHHHHHc-CCCcEEecCCCCc-hHHHHHHhCCCCcEEEEccC-cccccChhheeeHHHHHHH
Confidence 4556888888888875 434333 345674 888 445579999999876 4579999999999999876
No 70
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=94.04 E-value=0.043 Score=47.23 Aligned_cols=65 Identities=20% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCc--eeecCCchhhHhhhhC--CCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 215 LDSRGFHVLCKATEEVVGHVNP--YSITGTLPLIRELQDE--GFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 215 ~d~~~~~~l~~~~~~~~g~~~~--~~~~gg~~da~~~~~~--g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.+..+.+.+.+++++. +-+.. ....|| +|+..++.. |+|++.++.- .-.+|++.|.++++|+..+
T Consensus 221 ~~~~l~~~l~~~A~~~-~Ip~Q~~~~~~gg-TDa~~~~~~~~Gi~t~~i~iP-~ry~Hs~~e~~~~~Di~~~ 289 (292)
T PF05343_consen 221 PNPKLVDKLREIAEEN-GIPYQREVFSGGG-TDAGAIQLSGGGIPTAVISIP-CRYMHSPVEVIDLDDIEAT 289 (292)
T ss_dssp SHHHHHHHHHHHHHHT-T--EEEEEESSSS-STHHHHHTSTTSSEEEEEEEE-EBSTTSTTEEEEHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCCeEEEecCCcc-cHHHHHHHcCCCCCEEEEecc-cccCCCcceEEEHHHHHHH
Confidence 3457888888888875 44433 334566 588888874 9999988753 4478999999999999876
No 71
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=93.72 E-value=0.12 Score=45.54 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCce-eec-CCchhhHhhhh--CCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 216 DSRGFHVLCKATEEVVGHVNPY-SIT-GTLPLIRELQD--EGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 216 d~~~~~~l~~~~~~~~g~~~~~-~~~-gg~~da~~~~~--~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
+..+.+.|.+++++. +-+..+ ... || +|+..+.. .|+|+..+|++ ....|++.|.++++|+..+
T Consensus 268 ~~~l~~~L~~~A~~~-~Ip~Q~~v~~~gg-TDA~a~~~~g~gvpta~Igip-~ry~Hs~~e~~~~~D~~~~ 335 (355)
T COG1363 268 HPKLRKFLLELAEKN-NIPYQVDVSPGGG-TDAGAAHLTGGGVPTALIGIP-TRYIHSPVEVAHLDDLEAT 335 (355)
T ss_pred CHHHHHHHHHHHHHc-CCCeEEEecCCCC-ccHHHHHHcCCCCceEEEecc-cccccCcceeecHHHHHHH
Confidence 344777888888775 434322 233 56 47877766 47999999987 4468999999999999875
No 72
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=93.26 E-value=0.027 Score=44.57 Aligned_cols=51 Identities=27% Similarity=0.257 Sum_probs=36.8
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT 55 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~ 55 (283)
|.|++.+.+++++|+|+|..+||.|. .|+++++++......+..++|..|.
T Consensus 39 r~l~~~~~~~~~~i~fv~~~~EE~gl---~GS~~~~~~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 39 RVLKELKPQPKRTIRFVFFDGEEQGL---LGSRAFVEHDHEELDNIAAVINLDM 89 (179)
T ss_dssp HHHHHSTHSSSEEEEEEEESSGGGTS---HHHHHHHHHHHCHHHHEEEEEEECS
T ss_pred HHHHHhhcccCccEEEEEecccccCc---cchHHHHHhhhcccccceeEEeccc
Confidence 56777677789999999999999998 8999999732111122345666664
No 73
>PRK09864 putative peptidase; Provisional
Probab=92.44 E-value=0.25 Score=43.70 Aligned_cols=65 Identities=12% Similarity=-0.012 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCce-e-ecCCchhhHhhhh--CCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 215 LDSRGFHVLCKATEEVVGHVNPY-S-ITGTLPLIRELQD--EGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 215 ~d~~~~~~l~~~~~~~~g~~~~~-~-~~gg~~da~~~~~--~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.+..+.+.+.+++++. +-+..+ . ..||| |+..++. .|+|++.++.- .-.+|+|.|-++++|+..+
T Consensus 262 ~~~~l~~~l~~~A~~~-~Ip~Q~~~~~~ggT-Da~~i~~~~~Gvpt~~isiP-~RY~Hs~~e~~~~~D~e~~ 330 (356)
T PRK09864 262 PNQKLVAALKSCAAHN-DLPLQFSTMKTGAT-DGGRYNVMGGGRPVVALCLP-TRYLHANSGMISKADYDAL 330 (356)
T ss_pred CCHHHHHHHHHHHHHc-CCCceEEEcCCCCc-hHHHHHHhCCCCcEEEEeec-cCcCCCcceEeEHHHHHHH
Confidence 3456788888888875 444443 2 33675 7777765 59999888742 2368999999999999876
No 74
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=91.28 E-value=0.39 Score=42.41 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCce-e-ecCCchhhHhhhh--CCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 215 LDSRGFHVLCKATEEVVGHVNPY-S-ITGTLPLIRELQD--EGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 215 ~d~~~~~~l~~~~~~~~g~~~~~-~-~~gg~~da~~~~~--~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.+..+.+.+.+++++. +-+..+ . ..||| |+..++. .|+|++.+++. .-.+|+ -|.++++|+..+
T Consensus 264 ~~~~l~~~l~~~A~~~-~Ip~Q~~~~~~~gt-Da~~~~~~~~Gi~t~~i~iP-~Ry~Hs-~e~~~~~D~~~~ 331 (343)
T TIGR03106 264 FDYHLTRKLIRLCQDH-GIPHRRDVFRYYRS-DAASAVEAGHDIRTALVTFG-LDASHG-YERTHIDALEAL 331 (343)
T ss_pred CCHHHHHHHHHHHHHc-CCCcEEEecCCCCC-hHHHHHHcCCCCCEEEeecc-ccchhh-hhhccHHHHHHH
Confidence 3567888899888875 444333 2 33564 7777665 59999999875 446899 999999999876
No 75
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=90.83 E-value=0.16 Score=43.73 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=29.7
Q ss_pred CCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecC
Q 023343 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT 55 (283)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~ 55 (283)
.+..+|+|+|++.||.|. .|+.....+ ++||++++.|.
T Consensus 153 ~~~~~v~~v~tvqEEvG~---rGA~~aa~~-----i~PD~ai~vD~ 190 (292)
T PF05343_consen 153 ELDVDVYFVFTVQEEVGL---RGAKTAAFR-----IKPDIAIAVDV 190 (292)
T ss_dssp S-SSEEEEEEESSCTTTS---HHHHHHHHH-----H-CSEEEEEEE
T ss_pred CCCceEEEEEEeeeeecC---cceeecccc-----cCCCEEEEEee
Confidence 356999999999999998 799888754 36788887763
No 76
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=90.77 E-value=0.25 Score=43.67 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC
Q 023343 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (283)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~ 57 (283)
+++.+|+++|++.||.|. .|++..... ++||++++.|.+.
T Consensus 197 ~~~~~l~~~~tvqEEvG~---rGA~~aa~~-----i~pD~aI~vDv~~ 236 (350)
T TIGR03107 197 ELPNTLIAGANVQEEVGL---RGAHVSTTK-----FNPDIFFAVDCSP 236 (350)
T ss_pred CCCceEEEEEEChhhcCc---hhhhhHHhh-----CCCCEEEEEecCC
Confidence 478899999999999998 698876533 4688999988654
No 77
>PRK09864 putative peptidase; Provisional
Probab=90.74 E-value=0.21 Score=44.23 Aligned_cols=46 Identities=22% Similarity=0.127 Sum_probs=35.2
Q ss_pred ccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC
Q 023343 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (283)
Q Consensus 3 ~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~ 57 (283)
.|++... ++.+|+++|++.||.|. .|++..... ++||++|+.|.+.
T Consensus 186 ~l~~l~~-~~~~vy~v~TvQEEvGl---rGA~~aa~~-----i~PDiaIavDvt~ 231 (356)
T PRK09864 186 LLQTVNN-PEITLYGVGSVEEEVGL---RGAQTSAEH-----IKPDVVIVLDTAV 231 (356)
T ss_pred HHHHhhc-CCCeEEEEEEcchhcch---HHHHHHHhc-----CCCCEEEEEeccc
Confidence 3444432 78999999999999998 698887643 4688999888654
No 78
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=90.19 E-value=0.23 Score=43.72 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=33.6
Q ss_pred cCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC
Q 023343 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (283)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~ 57 (283)
+.+++.+++|+|++.||.|. .|++.... .+++|+++..+.+.
T Consensus 197 ~~~~~~~vy~v~tvqEEVGl---rGA~~~a~-----~i~pd~aiavd~~~ 238 (355)
T COG1363 197 GIELPADVYFVASVQEEVGL---RGAKTSAF-----RIKPDIAIAVDVTP 238 (355)
T ss_pred cCCCCceEEEEEecchhhcc---chhhcccc-----ccCCCEEEEEeccc
Confidence 46899999999999999998 68777653 35688999887543
No 79
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=88.93 E-value=0.3 Score=42.90 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=27.7
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHcc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDG 40 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~ 40 (283)
+.|++. +++.+|.|++.++||.|. .|+++++++.
T Consensus 156 r~l~~~--~~~~~I~fv~~~~EE~Gl---~GS~~~~~~~ 189 (346)
T PRK10199 156 ERLKNV--PTEYGIRFVATSGEEEGK---LGAENLLKRM 189 (346)
T ss_pred HHHhhC--CCCCcEEEEEECCcccCc---HHHHHHHHhc
Confidence 445543 467899999999999998 8999999874
No 80
>PRK09961 exoaminopeptidase; Provisional
Probab=88.59 E-value=0.48 Score=41.86 Aligned_cols=40 Identities=25% Similarity=0.170 Sum_probs=32.6
Q ss_pred CCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecCCC
Q 023343 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (283)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~~~ 57 (283)
+++.+|+++|+..||.|. .|++..... ++||+++..|.+.
T Consensus 185 ~~~~~v~~~~tvqEEvG~---rGa~~aa~~-----i~pd~~I~vDv~~ 224 (344)
T PRK09961 185 ELPAEVWLVASSSEEVGL---RGGQTATRA-----VSPDVAIVLDTAC 224 (344)
T ss_pred CCCceEEEEEEcccccch---HHHHHHHhc-----cCCCEEEEEeccC
Confidence 478999999999999998 688877643 4688999888553
No 81
>PRK02256 putative aminopeptidase 1; Provisional
Probab=84.37 E-value=1.2 Score=40.82 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCce--e----e-cCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 215 LDSRGFHVLCKATEEVVGHVNPY--S----I-TGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 215 ~d~~~~~~l~~~~~~~~g~~~~~--~----~-~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.|..++..+.+++++. +-+... . . .||| |+..+.+.|+|++.+|.- .--+|++.|-++.+|+..+
T Consensus 380 ~~~~~~~~i~~iA~~~-~Ip~Q~~~~~r~d~~~GgT-ig~~~s~~Gi~tvdiGiP-~l~MHS~rE~~~~~D~~~~ 451 (462)
T PRK02256 380 ANAEFVAEVRNLFNKN-NVVWQTAELGKVDQGGGGT-IAKFLANYGMEVIDCGVA-LLSMHSPFEIASKADIYET 451 (462)
T ss_pred CCHHHHHHHHHHHHHc-CCCEEEEEeecCCCCCcCh-HHHHHcCCCCcEEEechh-hhccccHHHHhhHHHHHHH
Confidence 4666778888888764 444322 2 2 4564 788877789999999864 3468999999999998764
No 82
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=80.67 E-value=0.86 Score=40.24 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=21.5
Q ss_pred cccccccCCCceeEEEEEEeccccCC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSA 27 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~ 27 (283)
+.|++.+.+++.+|.++|+++||+|+
T Consensus 196 ~~l~~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 196 KAIVEHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred HHHHhcCCCCCceEEEEEECCcccCc
Confidence 45666666688999999999999985
No 83
>PRK02813 putative aminopeptidase 2; Provisional
Probab=75.98 E-value=3.5 Score=37.60 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCc-ee-e---cCCchhhHhhh-hCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 216 DSRGFHVLCKATEEVVGHVNP-YS-I---TGTLPLIRELQ-DEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 216 d~~~~~~l~~~~~~~~g~~~~-~~-~---~gg~~da~~~~-~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
|......+++++++. +-+.. +. . .||++-+.+.. +.|+|++.+|.- .--+|++.|-++..|+..+
T Consensus 347 ~~~~~a~~~~ia~~~-~Ip~Q~~v~~~d~~gGstig~i~~s~~Gi~tvdiGiP-~l~MHS~~E~~~~~D~~~~ 417 (428)
T PRK02813 347 DAESAAVFKLLCEKA-GVPYQEFVNRSDMPCGSTIGPITAARLGIRTVDVGAP-MLAMHSARELAGVKDHAYL 417 (428)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEEecCCCCCccHHHHHHHhCCCCcEEEeChh-hcccccHHHHccHHHHHHH
Confidence 556777777777764 43322 22 2 25655555555 369999999874 3468999999999998764
No 84
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=74.68 E-value=4.2 Score=37.51 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCc-ee----ecCCchhhHhhh-hCCCcEEEEcCCCCccCCCCCcccchhhhhhh
Q 023343 215 LDSRGFHVLCKATEEVVGHVNP-YS----ITGTLPLIRELQ-DEGFDVQTAGYGLMATYHADNEYCLLSDIRLT 282 (283)
Q Consensus 215 ~d~~~~~~l~~~~~~~~g~~~~-~~----~~gg~~da~~~~-~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~~ 282 (283)
.|..++..+++.+++. +-+.. +. ..||++-+.+.. +.|+|++.+|.- .-.+|++.|-++..|+..+
T Consensus 373 td~~~~a~i~~la~~~-~Ip~Q~~~~~~d~~~GsTig~i~~s~~Gi~tvDiGiP-~l~MHS~rE~~~~~D~~~~ 444 (465)
T PTZ00371 373 TNGVTASLLKAIAKKA-NIPIQEFVVKNDSPCGSTIGPILSSNLGIRTVDIGIP-QLAMHSIREMCGVVDIYYL 444 (465)
T ss_pred cCHHHHHHHHHHHHHc-CCCEEEEEecCCCCCcchHHHHHHhCCCCcEEEechh-hcccccHHHHccHHHHHHH
Confidence 3566788888888774 43322 11 223544566655 379999999975 4468999999999998754
No 85
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=58.96 E-value=7.8 Score=35.29 Aligned_cols=35 Identities=34% Similarity=0.289 Sum_probs=29.6
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccc
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGL 41 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~ 41 (283)
|.|++.. ++.+|.|++...||.|. .|+.+++.+..
T Consensus 241 r~l~~~~--p~~~v~f~~~~aEE~Gl---~GS~~~~~~~~ 275 (435)
T COG2234 241 RVLKGNP--PKRTVRFVAFGAEESGL---LGSEAYVKRLS 275 (435)
T ss_pred HHHhcCC--CCceEEEEEecchhhcc---cccHHHHhcCC
Confidence 4555554 89999999999999998 79999998865
No 86
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=55.91 E-value=7.4 Score=37.74 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=30.5
Q ss_pred ccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHcc
Q 023343 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDG 40 (283)
Q Consensus 3 ~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~ 40 (283)
.|++.+.+|.++|+|+...+||.|. .|+-.+++..
T Consensus 387 ~~~k~gwrP~RtI~F~sWdAeEfGl---iGStE~~E~~ 421 (702)
T KOG2195|consen 387 KLKKRGWRPRRTILFASWDAEEFGL---LGSTEWAEEY 421 (702)
T ss_pred HHHHcCCCccceEEEEEccchhccc---cccHHHHHHH
Confidence 4566789999999999999999998 7998888754
No 87
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=50.07 E-value=9 Score=37.61 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=36.3
Q ss_pred cccccccCCCceeEEEEEEeccccCCCCCcCHHHHHHccc-cccCCCCceEEecC
Q 023343 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGL-LNKLKGGPLYWIDT 55 (283)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~-~~~~~~d~~~~~e~ 55 (283)
|.+.+....+..+|+|+|...||.+. .|+..++.++. ...+ .+++..|.
T Consensus 176 Rv~s~~~~~l~~~vVFLfNgaEE~~L---~gsH~FItQH~w~~~~--ka~INLea 225 (834)
T KOG2194|consen 176 RVLSKSDKLLTHSVVFLFNGAEESGL---LGSHAFITQHPWSKNI--KAVINLEA 225 (834)
T ss_pred HHhhcCCCcccccEEEEecCcccchh---hhcccceecChhhhhh--heEEeccc
Confidence 55666666789999999999999988 89999988663 2333 35665553
No 88
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=48.90 E-value=36 Score=30.85 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHhCCCC-ce-----eecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccchhhhhh
Q 023343 216 DSRGFHVLCKATEEVVGHVN-PY-----SITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDIRL 281 (283)
Q Consensus 216 d~~~~~~l~~~~~~~~g~~~-~~-----~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~ 281 (283)
|...+..+++++++. |-+. .| ...|||.=.....+.|++++-+|+- .-.+|++.|-....|+..
T Consensus 355 d~~~~a~~~~l~~~~-~Vp~Q~f~~~~d~~~Gstigpi~aa~tGi~tIDiG~~-~LsMHS~rE~~g~~D~~~ 424 (437)
T COG1362 355 DSEGIALLRKLAQKA-GVPWQVFVLRNDVPCGSTIGPILAARTGIRTIDIGPA-LLSMHSIRELSGSADLYE 424 (437)
T ss_pred CchHHHHHHHHHHHc-CCceEEEEecccCCCCcccchhHHhhcCCceeecchh-hhhhccHHHHcchhHHHH
Confidence 678888899888875 4432 11 2345543233344479999999975 457899999998888764
No 89
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=46.65 E-value=31 Score=32.13 Aligned_cols=33 Identities=9% Similarity=-0.110 Sum_probs=26.3
Q ss_pred eecCccEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 023343 140 QIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (283)
Q Consensus 140 viP~~~~~~~~~R~~p~~~~~~~~~~i~~~l~~ 172 (283)
.--+.+++.+++|++++.+.+++.+.+++..+.
T Consensus 353 ~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~ 385 (485)
T PRK15026 353 MTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKL 385 (485)
T ss_pred EeCCEEEEEEEecCCCchHHHHHHHHHHHHHHH
Confidence 445679999999999988888888888776443
No 90
>COG3150 Predicted esterase [General function prediction only]
Probab=35.71 E-value=73 Score=25.17 Aligned_cols=61 Identities=16% Similarity=0.044 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhCCCCc--eeecCCchhhHhhhh-CCCcEEEEcCC------------CCccCCCCCcc----cchhh
Q 023343 218 RGFHVLCKATEEVVGHVNP--YSITGTLPLIRELQD-EGFDVQTAGYG------------LMATYHADNEY----CLLSD 278 (283)
Q Consensus 218 ~~~~~l~~~~~~~~g~~~~--~~~~gg~~da~~~~~-~g~p~v~~g~g------------~~~~~H~~nE~----i~~~~ 278 (283)
.+.+.+.+++.+..++.+. .++.||. .+-++.. .|++.|+|-|. ...+.|+-.|| ..|++
T Consensus 44 ~a~~ele~~i~~~~~~~p~ivGssLGGY-~At~l~~~~Girav~~NPav~P~e~l~gylg~~en~ytg~~y~le~~hI~~ 122 (191)
T COG3150 44 QALKELEKAVQELGDESPLIVGSSLGGY-YATWLGFLCGIRAVVFNPAVRPYELLTGYLGRPENPYTGQEYVLESRHIAT 122 (191)
T ss_pred HHHHHHHHHHHHcCCCCceEEeecchHH-HHHHHHHHhCChhhhcCCCcCchhhhhhhcCCCCCCCCcceEEeehhhHHH
Confidence 4677788888886555432 2356665 6766766 59999988762 23466777788 45554
Q ss_pred h
Q 023343 279 I 279 (283)
Q Consensus 279 l 279 (283)
+
T Consensus 123 l 123 (191)
T COG3150 123 L 123 (191)
T ss_pred H
Confidence 4
No 91
>PHA02448 hypothetical protein
Probab=32.94 E-value=2.1e+02 Score=21.33 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=43.7
Q ss_pred cCCCceeEEEEEEeccccCCCCCcCHHHHHHccccccCCCCceEEecC----CCCCceeccCCceeEEEEEeecCC--Cc
Q 023343 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT----ADKQPCIGTGGMIPWKLHVTGKLF--HS 81 (283)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~~~~e~----~~~~i~~~~~G~~~~~i~v~G~~~--Hs 81 (283)
+..+++.|.+-|...-|..+ +. +++|-...+|| .++.+.+-+.|.+|+++++-|..- .+
T Consensus 22 gklpkggi~ld~~gh~~lt~-----------r~----l~~dplwtwep~a~~~~glp~~d~~gglwirlt~~g~tr~gyg 86 (192)
T PHA02448 22 GKLPKGGITLDFLGHGYLTA-----------RF----LDVDPLWTWEPFAVGDNGLPLLDEHGGLWIRLTLCGVTRIGYG 86 (192)
T ss_pred ccCCCCceeEEecchhhhhh-----------hh----cccCccccccccccCCCCCcccccCCCeEEEEEEeccceeecc
Confidence 34566777777765433221 21 13344555554 345677889999999999988642 22
Q ss_pred -CCCCCCCCHHHHH
Q 023343 82 -GLPHKAINPLELA 94 (283)
Q Consensus 82 -s~p~~g~nai~~~ 94 (283)
+..-.|.||+..+
T Consensus 87 d~~gk~gpnavkea 100 (192)
T PHA02448 87 DAGGKKGPNAVKEA 100 (192)
T ss_pred ccCCCcCchHHHHH
Confidence 2235678987654
No 92
>PRK02813 putative aminopeptidase 2; Provisional
Probab=31.17 E-value=33 Score=31.35 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=18.3
Q ss_pred ceeEEEEEEeccccCCCCCcCHHH
Q 023343 12 KSTVIAVFIASEENSAITGVGVDA 35 (283)
Q Consensus 12 ~~~i~~~~~~dEE~g~~~~~G~~~ 35 (283)
..++++++...||+|++.-.|+..
T Consensus 252 ~~~~~~~~~d~EEVGs~~~~GA~s 275 (428)
T PRK02813 252 DATNVLAAFDHEEVGSATKQGADS 275 (428)
T ss_pred CCeEEEEEEecCccCCCCCcccCc
Confidence 678999999999999832236663
No 93
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=28.32 E-value=1.9e+02 Score=19.50 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=26.0
Q ss_pred ccEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 023343 144 ECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 173 (283)
Q Consensus 144 ~~~~~~~~R~~p~~~~~~~~~~i~~~l~~~ 173 (283)
+|++++-+|.+++.+..++...|.+++...
T Consensus 4 h~~fTVai~v~~g~~y~~L~~~ls~kL~l~ 33 (78)
T cd06411 4 QCAFTVALRAPRGADVSSLRALLSQALPQQ 33 (78)
T ss_pred EEEEEEEEEccCCCCHHHHHHHHHHHhcCC
Confidence 578999999999999999988888888753
No 94
>PRK05943 50S ribosomal protein L25; Reviewed
Probab=26.22 E-value=69 Score=22.31 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=15.6
Q ss_pred hhhHhhhhC-CCcEEEEcCCC
Q 023343 244 PLIRELQDE-GFDVQTAGYGL 263 (283)
Q Consensus 244 ~da~~~~~~-g~p~v~~g~g~ 263 (283)
..++-+++. -+|+++||+|.
T Consensus 15 ~~~r~lR~~G~vPaViYG~~~ 35 (94)
T PRK05943 15 GASRRLRRAGKFPAIIYGGNE 35 (94)
T ss_pred hHHHHHHHCCCCCEEEECCCC
Confidence 457778876 48999999874
No 95
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=23.71 E-value=1.3e+02 Score=27.64 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHhCCCC-ce-----eecCCchhhHhhhh-CCCcEEEEcCCCCccCCCCCcccchhhhhh
Q 023343 216 DSRGFHVLCKATEEVVGHVN-PY-----SITGTLPLIRELQD-EGFDVQTAGYGLMATYHADNEYCLLSDIRL 281 (283)
Q Consensus 216 d~~~~~~l~~~~~~~~g~~~-~~-----~~~gg~~da~~~~~-~g~p~v~~g~g~~~~~H~~nE~i~~~~l~~ 281 (283)
|..-...+++.+++. +-+. .| ...|+| -+..+.. .|+++|-+|.- .--+|++.|-+...|+..
T Consensus 354 d~~~~a~~~~i~~~~-~ip~Q~f~~r~d~~~GsT-iGpi~sa~~gi~tvDiG~P-~LsMHS~rE~~g~~D~~~ 423 (432)
T PF02127_consen 354 DAASAAVFREICEKA-GIPWQEFVNRSDDPGGST-IGPILSARLGIRTVDIGIP-QLSMHSIRETAGKKDIYY 423 (432)
T ss_dssp -HHHHHHHHHHHHHH-H--EEEEESSSTSSS--H-HHHHHHHCCTSEEEEEE-E-EESTTSSSEEEEHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCCeEEEEecCCCCCCcc-HHHHHHHhcCCCEEEechh-hhhcccHHHHhccccHHH
Confidence 444555666666654 3321 11 234554 5665554 79999999974 446899999999888754
No 96
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=23.39 E-value=1e+02 Score=25.27 Aligned_cols=46 Identities=24% Similarity=0.266 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCceeecCCchhhHhhhhCCCcEEEEcCCCCccCCCCCcccch
Q 023343 221 HVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLL 276 (283)
Q Consensus 221 ~~l~~~~~~~~g~~~~~~~~gg~~da~~~~~~g~p~v~~g~g~~~~~H~~nE~i~~ 276 (283)
+.|..-+.+....+..|.+.|-. ..+ ..++|++- -|+ ..|||||.+
T Consensus 61 ~~~~~~~~~~GsaPiV~~ITG~l--VS~--S~~vp~~~-~~~-----d~pN~Yv~L 106 (260)
T PF05268_consen 61 QWFRDRCFEAGSAPIVFNITGNL--VSY--SKDVPCFF-MYG-----DTPNEYVQL 106 (260)
T ss_pred hHHHHHHHHcCCCCEEEEeccce--eec--cCCceeEe-ccC-----CCCcceEEE
Confidence 34555566654456667666543 221 25799874 355 368888865
No 97
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=22.07 E-value=2.6e+02 Score=18.94 Aligned_cols=29 Identities=0% Similarity=0.096 Sum_probs=24.7
Q ss_pred ccEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 023343 144 ECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (283)
Q Consensus 144 ~~~~~~~~R~~p~~~~~~~~~~i~~~l~~ 172 (283)
+.+..+-+|.+++.+..++.++|.+.++-
T Consensus 8 ~f~~tIaIrvp~~~~y~~L~~ki~~kLkl 36 (80)
T cd06406 8 HFKYTVAIQVARGLSYATLLQKISSKLEL 36 (80)
T ss_pred EEEEEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 35668899999999999999999998874
No 98
>cd00495 Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is found only in bacteria and some plastids. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L
Probab=20.51 E-value=1e+02 Score=21.15 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=15.0
Q ss_pred hhhHhhhhCC-CcEEEEcCC
Q 023343 244 PLIRELQDEG-FDVQTAGYG 262 (283)
Q Consensus 244 ~da~~~~~~g-~p~v~~g~g 262 (283)
..++-+++.| +|+++||++
T Consensus 14 ~~~r~lR~~G~iPavvYG~~ 33 (91)
T cd00495 14 GASRRLRRAGKVPAVIYGKG 33 (91)
T ss_pred hHHHHHHHCCCCCEEEECCC
Confidence 3577788764 899999987
Done!