Query 023344
Match_columns 283
No_of_seqs 253 out of 1864
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:18:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0035 Upp Uracil phosphoribo 100.0 3.4E-70 7.3E-75 476.6 23.0 207 73-282 2-210 (210)
2 PF14681 UPRTase: Uracil phosp 100.0 7E-67 1.5E-71 462.0 22.5 204 77-281 1-207 (207)
3 PLN02541 uracil phosphoribosyl 100.0 2.7E-65 5.8E-70 460.2 25.0 208 74-282 32-244 (244)
4 TIGR01091 upp uracil phosphori 100.0 1.2E-61 2.6E-66 428.6 25.6 205 74-282 1-207 (207)
5 PRK00129 upp uracil phosphorib 100.0 2.3E-60 5E-65 420.9 25.4 205 74-282 3-209 (209)
6 KOG4203 Armadillo/beta-Catenin 100.0 2.1E-53 4.6E-58 414.8 10.0 281 1-282 174-473 (473)
7 KOG1017 Predicted uracil phosp 100.0 2.3E-47 5E-52 327.6 15.4 204 70-282 63-267 (267)
8 COG0572 Udk Uridine kinase [Nu 99.5 6.1E-15 1.3E-19 130.8 5.1 67 1-67 128-212 (218)
9 PLN02369 ribose-phosphate pyro 99.5 9.9E-13 2.1E-17 122.7 14.1 114 142-259 151-266 (302)
10 PTZ00301 uridine kinase; Provi 99.4 6.2E-13 1.4E-17 118.0 6.6 65 1-65 127-209 (210)
11 TIGR01203 HGPRTase hypoxanthin 99.4 6.4E-12 1.4E-16 107.7 11.8 95 143-239 27-126 (166)
12 PRK03092 ribose-phosphate pyro 99.3 6.8E-11 1.5E-15 110.5 14.3 103 142-246 148-252 (304)
13 PRK05205 bifunctional pyrimidi 99.3 2.2E-11 4.8E-16 105.1 9.2 141 97-260 8-166 (176)
14 PRK01259 ribose-phosphate pyro 99.0 6.7E-09 1.5E-13 97.4 13.0 114 142-260 158-273 (309)
15 cd02029 PRK_like Phosphoribulo 99.0 3.6E-10 7.7E-15 103.6 3.7 37 1-37 141-177 (277)
16 PRK02812 ribose-phosphate pyro 99.0 8.1E-09 1.8E-13 97.6 12.6 109 142-255 179-289 (330)
17 PRK15423 hypoxanthine phosphor 98.9 2.5E-08 5.5E-13 86.5 14.2 120 97-239 10-134 (178)
18 COG2065 PyrR Pyrimidine operon 98.9 1.1E-08 2.4E-13 86.6 11.4 117 97-236 8-136 (179)
19 PLN02318 phosphoribulokinase/u 98.9 5.7E-10 1.2E-14 111.7 4.0 69 1-69 177-274 (656)
20 PRK06827 phosphoribosylpyropho 98.9 1.6E-08 3.4E-13 97.2 13.0 111 142-255 207-326 (382)
21 PRK09162 hypoxanthine-guanine 98.9 5.3E-08 1.2E-12 84.5 14.5 121 93-238 14-138 (181)
22 TIGR01251 ribP_PPkin ribose-ph 98.9 4.1E-08 8.9E-13 92.0 14.2 109 142-254 159-269 (308)
23 PTZ00271 hypoxanthine-guanine 98.9 2.8E-08 6.2E-13 88.3 12.1 126 96-240 28-161 (211)
24 PF00156 Pribosyltran: Phospho 98.9 1E-08 2.2E-13 82.3 8.3 87 146-234 31-125 (125)
25 PRK00934 ribose-phosphate pyro 98.8 7.8E-08 1.7E-12 89.2 13.3 107 143-255 155-263 (285)
26 PTZ00149 hypoxanthine phosphor 98.8 3.9E-08 8.5E-13 89.0 10.9 119 95-239 57-192 (241)
27 PRK15453 phosphoribulokinase; 98.8 5.6E-09 1.2E-13 96.4 5.3 37 1-37 147-183 (290)
28 PLN02238 hypoxanthine phosphor 98.8 7.9E-08 1.7E-12 84.1 11.5 119 96-239 12-139 (189)
29 PRK05480 uridine/cytidine kina 98.8 1.4E-08 3E-13 89.2 6.5 65 1-65 126-208 (209)
30 cd02023 UMPK Uridine monophosp 98.7 2.6E-08 5.7E-13 86.6 6.1 61 1-61 119-197 (198)
31 COG1926 Predicted phosphoribos 98.7 6.6E-08 1.4E-12 85.0 8.0 68 188-259 117-184 (220)
32 PRK04923 ribose-phosphate pyro 98.6 4.5E-07 9.8E-12 85.4 12.6 109 142-255 166-276 (319)
33 TIGR01090 apt adenine phosphor 98.6 3.5E-07 7.5E-12 78.4 10.5 102 145-254 49-165 (169)
34 COG0634 Hpt Hypoxanthine-guani 98.6 4.4E-07 9.5E-12 77.9 11.0 96 142-239 35-135 (178)
35 TIGR00235 udk uridine kinase. 98.6 7.9E-08 1.7E-12 84.5 6.4 63 1-63 126-206 (207)
36 PRK02269 ribose-phosphate pyro 98.6 6.3E-07 1.4E-11 84.5 12.7 110 142-255 165-276 (320)
37 PRK02458 ribose-phosphate pyro 98.6 8.5E-07 1.8E-11 83.7 12.9 107 142-255 169-277 (323)
38 PRK07199 phosphoribosylpyropho 98.5 1.9E-06 4E-11 80.7 14.1 108 143-255 161-270 (301)
39 PRK02304 adenine phosphoribosy 98.5 8.9E-07 1.9E-11 76.2 10.8 96 144-244 53-163 (175)
40 COG0462 PrsA Phosphoribosylpyr 98.5 1.6E-06 3.5E-11 80.9 12.0 99 144-246 165-265 (314)
41 PF00485 PRK: Phosphoribulokin 98.5 8.8E-08 1.9E-12 83.4 3.3 37 1-37 127-163 (194)
42 PRK00553 ribose-phosphate pyro 98.4 3.9E-06 8.5E-11 79.5 13.2 100 142-246 168-269 (332)
43 PRK00455 pyrE orotate phosphor 98.4 4.7E-06 1E-10 73.4 11.7 102 145-254 67-169 (202)
44 PRK02277 orotate phosphoribosy 98.3 5E-06 1.1E-10 73.3 10.8 95 145-243 88-185 (200)
45 TIGR00336 pyrE orotate phospho 98.3 9.6E-06 2.1E-10 69.8 11.7 105 145-254 57-166 (173)
46 PLN02293 adenine phosphoribosy 98.3 9.1E-06 2E-10 71.0 11.4 94 145-244 65-174 (187)
47 cd02028 UMPK_like Uridine mono 98.2 7.6E-07 1.6E-11 77.0 3.6 43 1-45 118-161 (179)
48 PF14572 Pribosyl_synth: Phosp 98.2 2.4E-06 5.2E-11 74.3 6.5 57 188-246 76-134 (184)
49 TIGR01367 pyrE_Therm orotate p 98.2 1.1E-05 2.4E-10 70.5 10.2 89 144-240 60-148 (187)
50 PTZ00145 phosphoribosylpyropho 98.2 2.7E-05 5.9E-10 76.1 12.6 106 145-255 282-394 (439)
51 PRK13811 orotate phosphoribosy 98.1 3.9E-05 8.5E-10 66.0 11.3 100 145-253 59-159 (170)
52 PRK07322 adenine phosphoribosy 98.1 2E-05 4.4E-10 68.2 9.2 90 145-239 55-162 (178)
53 PRK09177 xanthine-guanine phos 98.1 2.3E-05 5E-10 66.5 9.1 86 144-239 33-121 (156)
54 PLN02348 phosphoribulokinase 98.0 3.4E-06 7.3E-11 81.3 3.9 37 1-37 183-219 (395)
55 PRK08558 adenine phosphoribosy 98.0 6.9E-05 1.5E-09 67.9 11.7 98 145-247 114-227 (238)
56 PRK13812 orotate phosphoribosy 98.0 9.3E-05 2E-09 64.1 11.6 101 145-254 61-163 (176)
57 PLN02297 ribose-phosphate pyro 98.0 4.3E-05 9.3E-10 72.2 9.6 57 188-246 223-281 (326)
58 PRK06031 phosphoribosyltransfe 97.9 0.00013 2.8E-09 65.9 11.5 103 145-249 87-207 (233)
59 PRK05793 amidophosphoribosyltr 97.9 5.8E-05 1.3E-09 74.7 9.9 84 145-232 291-388 (469)
60 PRK12560 adenine phosphoribosy 97.8 0.00025 5.5E-09 61.9 11.1 58 192-252 111-170 (187)
61 COG2236 Predicted phosphoribos 97.8 7.4E-05 1.6E-09 65.6 7.6 83 143-225 30-117 (192)
62 PRK08525 amidophosphoribosyltr 97.8 0.00012 2.7E-09 72.0 10.0 106 145-256 278-400 (445)
63 TIGR00201 comF comF family pro 97.7 4.7E-05 1E-09 66.3 5.5 40 192-233 149-188 (190)
64 COG1040 ComFC Predicted amidop 97.7 4E-05 8.7E-10 68.9 5.1 149 74-237 68-224 (225)
65 cd02026 PRK Phosphoribulokinas 97.7 2.5E-05 5.3E-10 72.1 3.6 37 1-37 116-152 (273)
66 PRK13810 orotate phosphoribosy 97.7 0.00064 1.4E-08 59.5 12.1 99 146-254 77-178 (187)
67 COG0856 Orotate phosphoribosyl 97.7 0.00013 2.9E-09 62.7 7.4 93 145-244 89-187 (203)
68 PRK13809 orotate phosphoribosy 97.7 0.00042 9.2E-09 61.5 11.0 93 146-245 71-167 (206)
69 PLN02440 amidophosphoribosyltr 97.7 0.00019 4.2E-09 71.3 9.5 86 145-233 278-376 (479)
70 PRK07429 phosphoribulokinase; 97.7 3.9E-05 8.5E-10 72.6 3.9 37 1-37 125-161 (327)
71 KOG1448 Ribose-phosphate pyrop 97.6 0.00014 2.9E-09 67.3 7.2 92 187-280 206-305 (316)
72 cd02025 PanK Pantothenate kina 97.6 2.4E-05 5.2E-10 69.9 2.1 39 1-39 129-170 (220)
73 PRK11595 DNA utilization prote 97.6 0.00011 2.3E-09 66.1 6.0 43 191-235 183-225 (227)
74 PRK09123 amidophosphoribosyltr 97.6 0.00042 9.2E-09 68.8 10.5 83 145-232 298-395 (479)
75 KOG3367 Hypoxanthine-guanine p 97.6 0.00028 6.1E-09 60.5 7.6 94 142-237 60-165 (216)
76 COG0503 Apt Adenine/guanine ph 97.5 0.0006 1.3E-08 59.2 9.5 87 145-237 56-155 (179)
77 TIGR01744 XPRTase xanthine pho 97.5 0.0015 3.3E-08 57.2 12.0 50 194-245 116-167 (191)
78 PRK08341 amidophosphoribosyltr 97.5 0.00047 1E-08 67.9 9.5 84 145-232 274-369 (442)
79 COG0461 PyrE Orotate phosphori 97.5 0.0015 3.2E-08 57.8 11.3 89 151-247 70-162 (201)
80 PRK09246 amidophosphoribosyltr 97.5 0.00048 1E-08 68.8 9.2 86 145-233 296-394 (501)
81 PRK09219 xanthine phosphoribos 97.4 0.0019 4.1E-08 56.6 11.1 50 194-245 116-167 (189)
82 TIGR01743 purR_Bsub pur operon 97.3 0.0035 7.7E-08 57.8 11.6 94 145-243 131-240 (268)
83 PRK07349 amidophosphoribosyltr 97.2 0.002 4.4E-08 64.3 9.7 83 145-231 315-411 (500)
84 KOG1712 Adenine phosphoribosyl 97.1 0.00053 1.1E-08 58.3 4.3 48 194-243 121-170 (183)
85 PRK07272 amidophosphoribosyltr 97.1 0.00097 2.1E-08 66.3 6.1 84 146-233 289-386 (484)
86 PRK09213 pur operon repressor; 97.0 0.0098 2.1E-07 55.0 11.7 94 145-243 133-242 (271)
87 TIGR01134 purF amidophosphorib 97.0 0.0025 5.5E-08 62.7 8.3 41 189-231 332-372 (442)
88 PRK07847 amidophosphoribosyltr 96.9 0.0042 9.1E-08 62.2 8.8 42 187-230 359-400 (510)
89 PRK07631 amidophosphoribosyltr 96.9 0.0042 9E-08 61.8 8.5 44 186-231 339-382 (475)
90 PRK06781 amidophosphoribosyltr 96.8 0.0044 9.6E-08 61.5 8.6 80 145-225 286-378 (471)
91 PRK06388 amidophosphoribosyltr 96.8 0.00092 2E-08 66.3 3.7 39 187-225 348-386 (474)
92 PRK05500 bifunctional orotidin 96.8 0.013 2.8E-07 58.3 11.3 194 25-245 213-442 (477)
93 TIGR00554 panK_bact pantothena 96.4 0.0019 4E-08 60.3 2.3 40 1-40 197-239 (290)
94 PF15609 PRTase_2: Phosphoribo 96.4 0.15 3.3E-06 44.7 13.9 59 195-255 121-184 (191)
95 PRK14732 coaE dephospho-CoA ki 96.3 0.01 2.2E-07 52.1 6.3 44 1-48 122-177 (196)
96 PRK08233 hypothetical protein; 96.1 0.0082 1.8E-07 50.7 4.8 63 1-67 98-179 (182)
97 PRK14734 coaE dephospho-CoA ki 96.1 0.014 3E-07 51.3 6.4 45 1-49 126-182 (200)
98 PRK14730 coaE dephospho-CoA ki 96.0 0.016 3.6E-07 50.6 6.2 54 1-62 126-191 (195)
99 COG0034 PurF Glutamine phospho 95.6 0.015 3.2E-07 57.0 4.5 113 103-231 267-382 (470)
100 KOG0572 Glutamine phosphoribos 95.6 0.0052 1.1E-07 58.9 1.3 79 151-232 312-393 (474)
101 PRK03333 coaE dephospho-CoA ki 94.4 0.14 3E-06 49.8 7.7 96 1-113 124-237 (395)
102 PRK06696 uridine kinase; Valid 94.2 0.049 1.1E-06 48.3 3.6 40 1-41 147-186 (223)
103 PRK01184 hypothetical protein; 93.5 0.23 4.9E-06 42.3 6.5 53 3-55 106-172 (184)
104 PRK05439 pantothenate kinase; 93.4 0.05 1.1E-06 51.3 2.4 40 1-40 217-259 (311)
105 PLN02422 dephospho-CoA kinase 93.3 0.23 5E-06 44.9 6.4 43 1-47 126-180 (232)
106 PRK14731 coaE dephospho-CoA ki 93.2 0.25 5.3E-06 43.5 6.3 45 1-49 134-190 (208)
107 PTZ00451 dephospho-CoA kinase; 92.8 0.29 6.3E-06 44.5 6.4 41 1-45 137-189 (244)
108 PRK14733 coaE dephospho-CoA ki 91.9 0.22 4.7E-06 44.2 4.3 42 1-46 129-182 (204)
109 PRK09270 nucleoside triphospha 91.9 0.19 4.1E-06 44.7 3.9 37 1-38 161-197 (229)
110 PRK00081 coaE dephospho-CoA ki 91.8 0.49 1.1E-05 41.1 6.3 55 1-63 125-191 (194)
111 cd02020 CMPK Cytidine monophos 90.7 0.35 7.5E-06 39.0 4.1 37 1-37 83-120 (147)
112 PRK13477 bifunctional pantoate 90.3 0.7 1.5E-05 46.5 6.5 35 2-37 422-459 (512)
113 PRK04182 cytidylate kinase; Pr 89.9 1.1 2.5E-05 37.3 6.7 21 2-22 93-113 (180)
114 TIGR02173 cyt_kin_arch cytidyl 89.7 1 2.2E-05 37.4 6.1 31 2-36 93-123 (171)
115 PRK07261 topology modulation p 88.4 0.62 1.3E-05 39.7 4.0 35 1-35 79-113 (171)
116 KOG1503 Phosphoribosylpyrophos 87.1 0.86 1.9E-05 41.6 4.2 67 192-261 244-313 (354)
117 PRK00023 cmk cytidylate kinase 86.9 1.9 4.1E-05 38.5 6.4 21 2-22 141-161 (225)
118 COG0237 CoaE Dephospho-CoA kin 86.6 2 4.3E-05 38.0 6.2 54 1-55 124-186 (201)
119 PRK09518 bifunctional cytidyla 85.3 1.8 4E-05 45.1 6.3 61 2-65 156-235 (712)
120 PRK06762 hypothetical protein; 85.1 2.5 5.5E-05 35.1 6.0 58 3-64 98-163 (166)
121 COG1102 Cmk Cytidylate kinase 82.9 3.8 8.3E-05 35.4 6.1 49 2-54 92-164 (179)
122 PF01488 Shikimate_DH: Shikima 82.0 5 0.00011 32.7 6.4 59 192-258 9-67 (135)
123 TIGR00017 cmk cytidylate kinas 81.3 3.1 6.7E-05 37.0 5.2 36 2-37 139-175 (217)
124 TIGR00152 dephospho-CoA kinase 80.9 2.3 4.9E-05 36.4 4.1 33 1-37 124-156 (188)
125 PRK11860 bifunctional 3-phosph 80.9 2.4 5.2E-05 44.0 5.0 35 2-37 575-611 (661)
126 PF15610 PRTase_3: PRTase ComF 79.4 3.6 7.7E-05 38.1 5.0 40 184-224 128-167 (274)
127 TIGR03263 guanyl_kin guanylate 76.6 6.6 0.00014 32.9 5.6 49 3-56 114-175 (180)
128 PRK13949 shikimate kinase; Pro 74.7 9.3 0.0002 32.4 6.1 20 2-22 95-114 (169)
129 COG0703 AroK Shikimate kinase 74.5 11 0.00024 32.6 6.4 58 3-61 97-168 (172)
130 PRK13946 shikimate kinase; Pro 73.4 11 0.00025 32.1 6.4 64 2-65 104-180 (184)
131 COG3954 PrkB Phosphoribulokina 72.3 8.5 0.00019 34.4 5.3 26 11-36 157-182 (289)
132 PRK00131 aroK shikimate kinase 70.9 14 0.0003 30.3 6.2 59 2-62 98-172 (175)
133 PF00919 UPF0004: Uncharacteri 69.3 12 0.00026 29.1 5.1 63 192-255 33-98 (98)
134 PF02224 Cytidylate_kin: Cytid 69.0 11 0.00023 32.2 5.1 35 2-37 81-117 (157)
135 PRK02812 ribose-phosphate pyro 67.0 62 0.0013 30.8 10.3 86 142-234 20-109 (330)
136 PRK05057 aroK shikimate kinase 65.9 19 0.00042 30.4 6.1 58 2-64 98-170 (172)
137 PRK14737 gmk guanylate kinase; 65.9 11 0.00023 32.6 4.6 51 3-58 118-181 (186)
138 PRK08356 hypothetical protein; 65.5 19 0.00042 30.9 6.2 21 3-23 117-137 (195)
139 PRK13947 shikimate kinase; Pro 64.6 19 0.00042 29.7 5.9 57 2-61 95-163 (171)
140 PRK02269 ribose-phosphate pyro 64.5 84 0.0018 29.7 10.7 84 144-234 6-93 (320)
141 PF13793 Pribosyltran_N: N-ter 64.0 74 0.0016 25.5 8.9 77 151-233 7-87 (116)
142 KOG3220 Similar to bacterial d 63.4 10 0.00022 33.9 4.0 47 3-50 128-183 (225)
143 PRK08118 topology modulation p 62.3 6.5 0.00014 33.3 2.5 30 1-30 79-108 (167)
144 smart00450 RHOD Rhodanese Homo 62.1 19 0.0004 26.1 4.8 45 194-248 55-99 (100)
145 PRK00698 tmk thymidylate kinas 62.1 19 0.00042 30.5 5.5 21 2-22 129-149 (205)
146 PRK00934 ribose-phosphate pyro 61.8 78 0.0017 29.3 9.8 77 151-233 6-85 (285)
147 PRK00300 gmk guanylate kinase; 61.2 23 0.00049 30.3 5.8 53 3-64 118-183 (205)
148 COG0283 Cmk Cytidylate kinase 59.1 26 0.00056 31.6 5.8 35 2-37 139-175 (222)
149 PF09960 DUF2194: Uncharacteri 58.3 27 0.00059 35.9 6.5 51 209-262 377-432 (585)
150 PF00625 Guanylate_kin: Guanyl 57.5 12 0.00027 31.6 3.5 53 3-60 116-181 (183)
151 PRK06217 hypothetical protein; 57.2 14 0.00031 31.4 3.8 28 1-28 84-111 (183)
152 PRK13973 thymidylate kinase; P 56.9 33 0.00072 30.0 6.2 22 1-22 129-150 (213)
153 PF01555 N6_N4_Mtase: DNA meth 56.0 8.5 0.00018 32.9 2.2 22 196-217 191-212 (231)
154 COG1428 Deoxynucleoside kinase 55.9 26 0.00057 31.4 5.3 25 2-31 128-152 (216)
155 smart00072 GuKc Guanylate kina 55.8 31 0.00068 29.2 5.7 52 3-59 116-180 (184)
156 PRK10078 ribose 1,5-bisphospho 55.2 37 0.00081 28.8 6.1 53 4-64 114-175 (186)
157 PRK04040 adenylate kinase; Pro 54.7 29 0.00063 30.0 5.4 20 2-21 112-131 (188)
158 COG0379 NadA Quinolinate synth 54.5 36 0.00079 32.3 6.2 125 112-262 61-220 (324)
159 COG0125 Tmk Thymidylate kinase 54.2 29 0.00063 30.8 5.3 36 2-37 129-170 (208)
160 cd07409 MPP_CD73_N CD73 ecto-5 54.0 74 0.0016 29.1 8.2 75 166-256 139-213 (281)
161 TIGR01251 ribP_PPkin ribose-ph 53.9 1.1E+02 0.0025 28.5 9.6 78 151-234 7-89 (308)
162 PF11181 YflT: Heat induced st 53.4 21 0.00046 27.7 3.9 41 205-247 6-46 (103)
163 PTZ00145 phosphoribosylpyropho 51.4 1.1E+02 0.0024 30.4 9.3 85 143-234 119-207 (439)
164 TIGR02322 phosphon_PhnN phosph 50.8 46 0.001 27.7 5.9 19 3-21 113-131 (179)
165 COG1207 GlmU N-acetylglucosami 50.4 1.1E+02 0.0024 30.4 9.0 63 195-259 68-137 (460)
166 KOG3079 Uridylate kinase/adeny 49.6 16 0.00035 32.1 2.9 25 2-26 114-138 (195)
167 PRK08154 anaerobic benzoate ca 49.6 43 0.00094 31.2 6.0 59 3-62 229-302 (309)
168 PRK12269 bifunctional cytidyla 49.5 31 0.00067 37.2 5.5 62 2-67 208-287 (863)
169 PLN02297 ribose-phosphate pyro 49.0 2.4E+02 0.0053 26.8 11.9 90 141-235 14-106 (326)
170 PRK06827 phosphoribosylpyropho 48.7 1.8E+02 0.0039 28.3 10.3 85 143-234 8-131 (382)
171 PRK04923 ribose-phosphate pyro 48.4 2.2E+02 0.0047 26.9 10.6 77 151-233 13-93 (319)
172 PRK00625 shikimate kinase; Pro 48.0 48 0.001 28.3 5.6 44 2-45 97-150 (173)
173 PRK07199 phosphoribosylpyropho 48.0 1.5E+02 0.0033 27.7 9.4 77 151-233 9-88 (301)
174 cd03416 CbiX_SirB_N Sirohydroc 47.1 73 0.0016 24.1 6.0 44 210-255 45-97 (101)
175 PLN02469 hydroxyacylglutathion 46.0 57 0.0012 29.7 6.1 58 195-258 22-81 (258)
176 PRK13975 thymidylate kinase; P 45.8 34 0.00074 28.9 4.4 21 2-22 115-135 (196)
177 TIGR03574 selen_PSTK L-seryl-t 45.2 87 0.0019 27.9 7.1 93 3-119 98-205 (249)
178 PRK00553 ribose-phosphate pyro 44.6 1.6E+02 0.0035 28.0 9.1 78 151-234 16-97 (332)
179 PLN02757 sirohydrochlorine fer 44.5 51 0.0011 27.8 5.1 44 210-255 59-111 (154)
180 PRK01259 ribose-phosphate pyro 44.3 2.4E+02 0.0051 26.5 10.1 78 151-234 7-88 (309)
181 cd01672 TMPK Thymidine monopho 44.3 61 0.0013 26.9 5.7 23 2-24 127-149 (200)
182 COG0169 AroE Shikimate 5-dehyd 44.0 41 0.0009 31.3 4.9 54 188-249 119-172 (283)
183 PRK03731 aroL shikimate kinase 43.7 70 0.0015 26.4 5.9 20 2-21 95-114 (171)
184 PRK00865 glutamate racemase; P 42.3 53 0.0011 29.9 5.3 86 147-254 8-96 (261)
185 TIGR01809 Shik-DH-AROM shikima 42.0 49 0.0011 30.5 5.0 49 192-248 122-170 (282)
186 PRK05541 adenylylsulfate kinas 41.0 17 0.00036 30.5 1.7 15 3-17 104-118 (176)
187 PRK10241 hydroxyacylglutathion 40.4 1.1E+02 0.0024 27.5 7.1 51 196-256 22-78 (251)
188 PLN02384 ribose-5-phosphate is 39.9 84 0.0018 29.1 6.2 67 204-272 54-130 (264)
189 COG0120 RpiA Ribose 5-phosphat 39.6 92 0.002 28.2 6.2 67 204-275 25-102 (227)
190 PRK02458 ribose-phosphate pyro 39.2 2.3E+02 0.0049 26.9 9.2 85 143-234 9-97 (323)
191 PF02875 Mur_ligase_C: Mur lig 38.7 1.6E+02 0.0034 21.7 7.3 62 196-259 13-82 (91)
192 COG0462 PrsA Phosphoribosylpyr 38.6 1.8E+02 0.004 27.6 8.3 78 151-234 11-92 (314)
193 PF02310 B12-binding: B12 bind 38.6 1.7E+02 0.0036 22.5 7.0 59 194-259 27-91 (121)
194 PF01170 UPF0020: Putative RNA 38.1 23 0.00049 30.4 2.1 23 198-220 30-52 (179)
195 PRK03092 ribose-phosphate pyro 37.9 1.6E+02 0.0035 27.5 7.9 64 166-234 10-77 (304)
196 cd00227 CPT Chloramphenicol (C 36.5 79 0.0017 26.4 5.2 40 4-47 114-161 (175)
197 PRK13978 ribose-5-phosphate is 36.2 1.3E+02 0.0028 27.2 6.7 68 204-273 26-102 (228)
198 PRK12548 shikimate 5-dehydroge 35.5 1.4E+02 0.003 27.5 7.0 35 193-233 124-158 (289)
199 cd06353 PBP1_BmpA_Med_like Per 35.5 1.3E+02 0.0029 27.0 6.8 54 197-254 33-86 (258)
200 PLN02369 ribose-phosphate pyro 35.4 2.4E+02 0.0051 26.4 8.6 64 166-234 12-79 (302)
201 cd01444 GlpE_ST GlpE sulfurtra 35.3 54 0.0012 24.0 3.5 31 194-229 55-85 (96)
202 cd01529 4RHOD_Repeats Member o 34.9 79 0.0017 23.4 4.5 33 194-231 55-87 (96)
203 cd02030 NDUO42 NADH:Ubiquinone 34.9 94 0.002 27.2 5.5 20 2-21 144-163 (219)
204 cd00158 RHOD Rhodanese Homolog 34.0 82 0.0018 22.2 4.3 33 194-231 49-81 (89)
205 PF10662 PduV-EutP: Ethanolami 33.9 67 0.0014 26.9 4.1 40 204-246 101-140 (143)
206 PRK03846 adenylylsulfate kinas 33.8 49 0.0011 28.4 3.5 14 4-17 125-138 (198)
207 TIGR01302 IMP_dehydrog inosine 33.8 83 0.0018 31.1 5.5 60 197-259 211-275 (450)
208 PRK11524 putative methyltransf 33.7 30 0.00064 31.8 2.2 42 196-246 208-249 (284)
209 PF02384 N6_Mtase: N-6 DNA Met 33.4 46 0.001 30.6 3.5 23 199-221 49-71 (311)
210 cd01673 dNK Deoxyribonucleosid 32.6 33 0.00071 29.1 2.2 25 2-31 126-150 (193)
211 cd01453 vWA_transcription_fact 31.7 1.7E+02 0.0036 25.0 6.5 51 195-248 108-159 (183)
212 PRK13699 putative methylase; P 31.2 35 0.00077 30.5 2.2 19 199-217 166-184 (227)
213 PF03807 F420_oxidored: NADP o 30.9 1.5E+02 0.0034 21.7 5.5 44 204-248 4-47 (96)
214 PRK00258 aroE shikimate 5-dehy 30.5 1.1E+02 0.0025 27.8 5.5 51 190-248 118-168 (278)
215 PF01903 CbiX: CbiX; InterPro 30.3 36 0.00079 25.9 1.9 41 213-255 41-90 (105)
216 PF04312 DUF460: Protein of un 30.2 48 0.001 27.7 2.7 73 196-272 32-123 (138)
217 PRK00889 adenylylsulfate kinas 30.2 19 0.00041 30.1 0.3 58 4-65 103-170 (175)
218 PHA01735 hypothetical protein 29.9 83 0.0018 23.2 3.5 40 204-250 28-67 (76)
219 COG0621 MiaB 2-methylthioadeni 29.8 1.2E+02 0.0027 30.1 5.9 66 188-256 33-101 (437)
220 PLN02962 hydroxyacylglutathion 29.5 4.3E+02 0.0093 23.9 9.3 57 194-258 34-96 (251)
221 PRK12749 quinate/shikimate deh 29.5 1.3E+02 0.0028 27.9 5.7 51 192-248 121-172 (288)
222 PRK09375 quinolinate synthetas 28.8 92 0.002 29.6 4.6 101 142-254 89-212 (319)
223 PRK13384 delta-aminolevulinic 28.8 1.3E+02 0.0028 28.6 5.5 49 209-259 61-125 (322)
224 cd06306 PBP1_TorT-like TorT-li 28.7 84 0.0018 27.7 4.2 37 208-245 192-228 (268)
225 COG1072 CoaA Panthothenate kin 28.7 40 0.00087 31.5 2.1 24 1-24 211-234 (283)
226 TIGR03642 cas_csx13 CRISPR-ass 28.4 2.1E+02 0.0045 23.4 6.1 44 211-254 7-56 (124)
227 PRK05416 glmZ(sRNA)-inactivati 28.4 1.1E+02 0.0023 28.6 4.9 56 4-63 89-158 (288)
228 TIGR01530 nadN NAD pyrophospha 28.3 2.6E+02 0.0056 28.4 8.1 135 87-256 77-213 (550)
229 PRK07933 thymidylate kinase; V 28.1 1E+02 0.0022 27.1 4.6 20 2-21 134-153 (213)
230 cd04823 ALAD_PBGS_aspartate_ri 28.1 1.5E+02 0.0032 28.3 5.7 51 208-260 53-121 (320)
231 PRK00676 hemA glutamyl-tRNA re 27.8 1.1E+02 0.0023 29.4 5.0 36 191-232 170-205 (338)
232 PRK13948 shikimate kinase; Pro 27.7 2E+02 0.0043 24.7 6.3 58 3-61 105-175 (182)
233 TIGR03765 ICE_PFL_4695 integra 27.6 1.5E+02 0.0033 23.6 5.0 53 197-253 26-78 (105)
234 TIGR01470 cysG_Nterm siroheme 27.3 1.7E+02 0.0036 25.7 5.8 47 192-246 6-52 (205)
235 cd04824 eu_ALAD_PBGS_cysteine_ 27.2 1.5E+02 0.0033 28.2 5.7 49 209-259 51-118 (320)
236 PRK14027 quinate/shikimate deh 27.2 93 0.002 28.8 4.3 45 193-245 125-169 (283)
237 PF11072 DUF2859: Protein of u 27.1 1.5E+02 0.0033 24.8 5.1 55 196-254 63-117 (142)
238 COG0796 MurI Glutamate racemas 27.0 1.5E+02 0.0033 27.5 5.6 80 152-253 16-95 (269)
239 PRK10936 TMAO reductase system 26.5 1E+02 0.0022 28.7 4.6 39 206-245 237-275 (343)
240 PF01712 dNK: Deoxynucleoside 26.4 91 0.002 25.6 3.7 25 2-31 69-93 (146)
241 PF13241 NAD_binding_7: Putati 26.2 79 0.0017 24.3 3.1 35 192-233 4-38 (103)
242 cd04821 PA_M28_1_2 PA_M28_1_2: 26.0 1.3E+02 0.0029 25.5 4.7 38 192-231 47-99 (157)
243 PRK13808 adenylate kinase; Pro 25.9 2.1E+02 0.0046 27.3 6.6 21 1-21 107-127 (333)
244 PRK12829 short chain dehydroge 25.8 3.3E+02 0.0071 23.5 7.5 56 192-255 8-65 (264)
245 cd06259 YdcF-like YdcF-like. Y 25.7 1E+02 0.0022 24.9 3.9 63 195-259 67-130 (150)
246 PRK13974 thymidylate kinase; P 25.7 1.2E+02 0.0026 26.4 4.6 20 2-21 136-155 (212)
247 cd07408 MPP_SA0022_N Staphyloc 25.6 3.1E+02 0.0068 24.5 7.4 77 166-256 125-208 (257)
248 cd01532 4RHOD_Repeat_1 Member 25.6 98 0.0021 22.9 3.5 32 194-230 49-82 (92)
249 COG0194 Gmk Guanylate kinase [ 25.5 1.9E+02 0.0042 25.5 5.7 53 3-60 116-181 (191)
250 TIGR01360 aden_kin_iso1 adenyl 25.4 2.5E+02 0.0054 23.1 6.4 21 2-22 108-128 (188)
251 cd01518 RHOD_YceA Member of th 25.2 1.4E+02 0.0031 22.2 4.4 31 194-229 60-90 (101)
252 cd00384 ALAD_PBGS Porphobilino 25.2 1.7E+02 0.0037 27.8 5.6 49 209-259 51-115 (314)
253 PLN00203 glutamyl-tRNA reducta 25.1 2.8E+02 0.0062 28.1 7.6 56 187-250 257-313 (519)
254 PRK12773 flhB flagellar biosyn 25.1 70 0.0015 33.2 3.3 93 9-110 525-638 (646)
255 cd01533 4RHOD_Repeat_2 Member 24.8 1.3E+02 0.0029 22.8 4.3 28 194-224 65-92 (109)
256 KOG2299 Ribonuclease HI [Repli 24.8 1.8E+02 0.0038 27.1 5.5 49 209-257 123-171 (301)
257 PF00490 ALAD: Delta-aminolevu 24.5 2.1E+02 0.0045 27.3 6.1 50 208-259 56-123 (324)
258 PRK13940 glutamyl-tRNA reducta 24.2 1E+02 0.0023 30.2 4.3 50 191-248 177-226 (414)
259 PF13649 Methyltransf_25: Meth 24.0 1.7E+02 0.0038 21.7 4.7 55 200-258 1-59 (101)
260 PF02608 Bmp: Basic membrane p 24.0 2E+02 0.0043 26.6 5.9 46 207-255 46-91 (306)
261 cd01519 RHOD_HSP67B2 Member of 23.7 1.4E+02 0.0029 22.3 4.1 32 194-230 65-96 (106)
262 PRK09283 delta-aminolevulinic 23.5 2E+02 0.0043 27.4 5.8 49 209-259 59-123 (323)
263 cd07406 MPP_CG11883_N Drosophi 23.5 2E+02 0.0044 25.8 5.8 76 166-256 127-202 (257)
264 TIGR01359 UMP_CMP_kin_fam UMP- 23.2 2.7E+02 0.0059 23.0 6.2 22 2-23 105-126 (183)
265 KOG4169 15-hydroxyprostaglandi 23.1 2.7E+02 0.0058 25.7 6.2 62 192-258 2-63 (261)
266 TIGR01223 Pmev_kin_anim phosph 23.0 98 0.0021 27.1 3.4 47 3-49 117-165 (182)
267 PRK05500 bifunctional orotidin 22.8 2.8E+02 0.0061 27.9 7.0 40 213-253 168-207 (477)
268 PRK12550 shikimate 5-dehydroge 22.4 94 0.002 28.6 3.4 45 195-247 122-166 (272)
269 KOG1348 Asparaginyl peptidases 22.3 87 0.0019 30.6 3.1 24 209-232 64-87 (477)
270 PLN02924 thymidylate kinase 22.3 1.4E+02 0.003 26.5 4.3 17 2-18 137-153 (220)
271 PLN02160 thiosulfate sulfurtra 22.2 1.5E+02 0.0032 24.1 4.2 42 195-246 81-122 (136)
272 smart00785 AARP2CN AARP2CN (NU 22.2 36 0.00079 25.7 0.5 15 260-274 56-71 (83)
273 cd01528 RHOD_2 Member of the R 22.0 1.6E+02 0.0035 21.9 4.2 31 194-229 57-87 (101)
274 PF00455 DeoRC: DeoR C termina 21.8 3.4E+02 0.0073 22.6 6.4 52 193-255 17-68 (161)
275 PRK12772 bifunctional flagella 21.6 69 0.0015 33.1 2.5 62 38-106 519-598 (609)
276 PRK05320 rhodanese superfamily 21.6 2.2E+02 0.0048 25.9 5.7 47 193-249 173-219 (257)
277 PF08142 AARP2CN: AARP2CN (NUC 21.4 38 0.00083 25.6 0.5 15 260-274 58-73 (85)
278 PF14234 DUF4336: Domain of un 21.4 2.4E+02 0.0053 26.4 5.9 59 195-255 29-89 (285)
279 PRK04128 1-(5-phosphoribosyl)- 21.4 1.1E+02 0.0024 27.4 3.5 53 203-260 75-128 (228)
280 TIGR00455 apsK adenylylsulfate 21.4 1.1E+02 0.0025 25.6 3.5 15 3-17 118-132 (184)
281 PRK08156 type III secretion sy 21.4 65 0.0014 31.1 2.2 65 38-109 251-333 (361)
282 PF01202 SKI: Shikimate kinase 21.3 2.8E+02 0.0062 22.7 5.9 55 3-59 87-157 (158)
283 PRK09108 type III secretion sy 21.3 57 0.0012 31.4 1.8 64 38-108 258-338 (353)
284 COG1377 FlhB Flagellar biosynt 21.3 2.2E+02 0.0047 27.7 5.6 60 38-104 263-340 (363)
285 TIGR00067 glut_race glutamate 20.9 2.7E+02 0.0058 25.2 6.0 81 152-254 9-90 (251)
286 PF04444 Dioxygenase_N: Catech 20.8 1.2E+02 0.0027 22.4 3.1 29 83-111 11-39 (74)
287 cd01523 RHOD_Lact_B Member of 20.7 1.5E+02 0.0033 21.9 3.8 27 194-223 60-86 (100)
288 TIGR00021 rpiA ribose 5-phosph 20.3 1.7E+02 0.0037 26.1 4.5 25 194-222 14-38 (218)
289 COG1465 Predicted alternative 20.3 3.8E+02 0.0083 25.5 6.8 88 106-206 183-295 (376)
290 PF01312 Bac_export_2: FlhB Hr 20.0 53 0.0012 31.4 1.3 63 38-107 258-338 (343)
No 1
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.4e-70 Score=476.60 Aligned_cols=207 Identities=41% Similarity=0.625 Sum_probs=200.0
Q ss_pred CceeeecCchHHHHHhHhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeec-cceeEEEecc
Q 023344 73 PNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFC-KKLCGVSIVR 151 (283)
Q Consensus 73 ~~v~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~-~~i~~V~IlR 151 (283)
.++++++|| +++|++|+|||++|++.+||++++||+++|+|||++++|+++.+|+||++ +++|..+. +++|+|||||
T Consensus 2 ~~v~vi~hp-li~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~-~~~~~~~~~~~i~~V~ILR 79 (210)
T COG0035 2 MNVYVIDHP-LVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLG-PTEGVQIAGKKIVIVPILR 79 (210)
T ss_pred CceEEeCcH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCcCceeEEEEECCCc-ceeeeeecCCcEEEEEEee
Confidence 578999996 79999999999999999999999999999999999999999999999999 58888886 4599999999
Q ss_pred cchHHHHHHHHhccCceeeeEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEE
Q 023344 152 SGESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIF 230 (283)
Q Consensus 152 aG~~m~~~l~~~~p~a~~G~i~i~R~~~t~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~ 230 (283)
||++|.+|+.+++|+|++|||+++||++|+ |..||.|||++++++.|+++|||+|||+|+++|++.|+++| .+++|++
T Consensus 80 AGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G-~~~~I~~ 158 (210)
T COG0035 80 AGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRG-GPKNIKV 158 (210)
T ss_pred ccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHHhC-CCceEEE
Confidence 999999999999999999999999999998 89999999999999999999999999999999999999997 6699999
Q ss_pred EEEeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 023344 231 LNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 282 (283)
Q Consensus 231 v~~vas~~gl~~l~~~~P~v~I~ta~iD~~ln~~~~ivPGlGd~GdR~fgt~ 282 (283)
+|++|+|+|++++.++||+|+||||+||++||++|||+|||||||||||||+
T Consensus 159 v~~vAapeGi~~v~~~~p~v~I~ta~iD~~Lne~gYIvPGLGDaGDR~fGt~ 210 (210)
T COG0035 159 VSLVAAPEGIKAVEKAHPDVEIYTAAIDEGLNEKGYIVPGLGDAGDRLFGTK 210 (210)
T ss_pred EEEEecHHHHHHHHHhCCCCeEEEEEeccccccCCCCccCCCcccccccCCC
Confidence 9999999999999999999999999999999999999999999999999996
No 2
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=100.00 E-value=7e-67 Score=462.01 Aligned_cols=204 Identities=46% Similarity=0.755 Sum_probs=188.5
Q ss_pred eecCchHHHHHhHhhhcCCCChhhhHhhHHHHHHHHHHHHhCC-CCCeeEEEeCCCCceeeeeeecc-ceeEEEecccch
Q 023344 77 VIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGH-LPFTEKQVVTPTGSMYTGVDFCK-KLCGVSIVRSGE 154 (283)
Q Consensus 77 vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~-lp~~~~~v~TP~g~~~~g~~~~~-~i~~V~IlRaG~ 154 (283)
|++| |++++|+|+|||++|++.+||++++||+++|+|||+++ +|+++++|+||+|.++.|...+. ++|+|||||||+
T Consensus 1 V~~~-p~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~ 79 (207)
T PF14681_consen 1 VPQH-PLLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRAGL 79 (207)
T ss_dssp EEB--HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTTHH
T ss_pred CCCC-HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCCcH
Confidence 4555 58999999999999999999999999999999999996 99999999999999988876654 999999999999
Q ss_pred HHHHHHHHhccCceeeeEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 023344 155 SMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 233 (283)
Q Consensus 155 ~m~~~l~~~~p~a~~G~i~i~R~~~t~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~ 233 (283)
+|++++++++|+|++|||+++||++|. |++||.+||.++++++|||+|||+|||+|+++|++.|+++|+++++|+++|+
T Consensus 80 ~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ 159 (207)
T PF14681_consen 80 PMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSV 159 (207)
T ss_dssp HHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEE
T ss_pred HHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEE
Confidence 999999999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred eeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCC
Q 023344 234 ISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGT 281 (283)
Q Consensus 234 vas~~gl~~l~~~~P~v~I~ta~iD~~ln~~~~ivPGlGd~GdR~fgt 281 (283)
++|++|++++.++||+|+||||+||++||++|||+||+||||||||||
T Consensus 160 ias~~Gl~~l~~~~P~v~I~ta~iD~~L~~~~~i~PGlGD~GdR~fgT 207 (207)
T PF14681_consen 160 IASPEGLERLLKAFPDVRIYTAAIDPELNENGYIVPGLGDAGDRYFGT 207 (207)
T ss_dssp EEEHHHHHHHHHHSTTSEEEEEEEESEEETTSEEESS-S-HHHHHHT-
T ss_pred EecHHHHHHHHHhCCCeEEEEEEEccccCCCCCccCCCCChHhcccCc
Confidence 999999999999999999999999999999999999999999999998
No 3
>PLN02541 uracil phosphoribosyltransferase
Probab=100.00 E-value=2.7e-65 Score=460.18 Aligned_cols=208 Identities=26% Similarity=0.390 Sum_probs=193.7
Q ss_pred ceeeecCchHHHHHhHhhhcCCCChhhhHhhHHHHHHHHHHHHhCC-CCCeeEEEeCCCCceeeeeeec--cceeEEEec
Q 023344 74 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGH-LPFTEKQVVTPTGSMYTGVDFC--KKLCGVSIV 150 (283)
Q Consensus 74 ~v~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~-lp~~~~~v~TP~g~~~~g~~~~--~~i~~V~Il 150 (283)
..+++.++|++++|+|+|||++|++.+||++++||++||+|||+++ +|+++++|+||+|.. .+.... .++|+||||
T Consensus 32 ~~~~~~~~p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~V~TP~g~~-~~~~~~~~~~i~~V~IL 110 (244)
T PLN02541 32 MLVFVPPHPLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGEVQTPMGVA-DVEFIDPREPVAVVPIL 110 (244)
T ss_pred ceEEecCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceEEECCCCeE-EEEeecCCCcEEEEeEe
Confidence 3455555679999999999999999999999999999999999876 999999999999964 344343 459999999
Q ss_pred ccchHHHHHHHHhccCceeeeEEEEecCCCC-ceeEeccCCCCCC-CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccE
Q 023344 151 RSGESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDIS-ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHI 228 (283)
Q Consensus 151 RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~-~~~~y~~lP~~i~-~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I 228 (283)
|||++|++++++++|++++|+++++||+.|. +++||.+||.+++ +++|+|+|||+|||+|+++|++.|+++|+++++|
T Consensus 111 RAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I 190 (244)
T PLN02541 111 RAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQI 190 (244)
T ss_pred CCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccE
Confidence 9999999999999999999999999999887 7899999999997 5799999999999999999999999999988999
Q ss_pred EEEEEeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 023344 229 IFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 282 (283)
Q Consensus 229 ~~v~~vas~~gl~~l~~~~P~v~I~ta~iD~~ln~~~~ivPGlGd~GdR~fgt~ 282 (283)
+++|++||++||+++.++||+|+||||+||++||++|||+|||||||||||||+
T Consensus 191 ~~v~~ias~~Gl~~i~~~fP~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt~ 244 (244)
T PLN02541 191 RVVCAVAAPPALKKLSEKFPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGTE 244 (244)
T ss_pred EEEEEEECHHHHHHHHHHCcCCEEEEEEECccccCCCcCcCCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999999999984
No 4
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=100.00 E-value=1.2e-61 Score=428.62 Aligned_cols=205 Identities=37% Similarity=0.541 Sum_probs=195.0
Q ss_pred ceeeecCchHHHHHhHhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeec-cceeEEEeccc
Q 023344 74 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFC-KKLCGVSIVRS 152 (283)
Q Consensus 74 ~v~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~-~~i~~V~IlRa 152 (283)
+||+++| |++++|+|+|||++|++.+||++++||+++|+|||++++|+++++|+||+|.+ .|.... +++|+|||||+
T Consensus 1 ~v~~~~~-p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~l~~~~~~v~tp~g~~-~~~~~~~~~i~~V~ILrg 78 (207)
T TIGR01091 1 MVVVIEH-PLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGET-EGGRILGKKIVLVPILRA 78 (207)
T ss_pred CeEecCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcE-EEeEecCCcEEEEEEeCC
Confidence 5899997 68999999999999999999999999999999999999999999999999985 455444 67999999999
Q ss_pred chHHHHHHHHhccCceeeeEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 023344 153 GESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231 (283)
Q Consensus 153 G~~m~~~l~~~~p~a~~G~i~i~R~~~t~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v 231 (283)
|++|++++++++|.+++|+++++|++.+. +..+|.++|.++++++|+|+|||+|||+|+.+|++.|+++|+ ++|.++
T Consensus 79 g~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~--~~I~v~ 156 (207)
T TIGR01091 79 GLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGA--KKIKVL 156 (207)
T ss_pred cHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHHcCC--CEEEEE
Confidence 99999999999999999999999998775 788999999999999999999999999999999999999998 579999
Q ss_pred EEeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 023344 232 NLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 282 (283)
Q Consensus 232 ~~vas~~gl~~l~~~~P~v~I~ta~iD~~ln~~~~ivPGlGd~GdR~fgt~ 282 (283)
|++++++|++++.++||+|+|||++||++||++|||+||+||||||||||+
T Consensus 157 ~ll~~~~gl~~l~~~~p~v~i~~~~id~~l~~~~yivPGlGd~Gdr~fgt~ 207 (207)
T TIGR01091 157 SIVAAPEGIEAVEKAHPDVDIYTAAIDEKLNDNGYIVPGLGDAGDRAFGTK 207 (207)
T ss_pred EEecCHHHHHHHHHHCCCCEEEEEEECCCccCCccCcCCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999999984
No 5
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=2.3e-60 Score=420.95 Aligned_cols=205 Identities=39% Similarity=0.573 Sum_probs=197.1
Q ss_pred ceeeecCchHHHHHhHhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeec-cceeEEEeccc
Q 023344 74 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFC-KKLCGVSIVRS 152 (283)
Q Consensus 74 ~v~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~-~~i~~V~IlRa 152 (283)
++|+++| |++++|+|+|||++|++.+||++++||+++|+|||++++|+++.+|+||+| .++|..+. +++|+|+|+|+
T Consensus 3 ~v~~~~~-p~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~l~~~~~~v~tp~g-~~~g~~~~~~~~vvV~Ilrg 80 (209)
T PRK00129 3 KVHVVDH-PLIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRDLPLEEVEIETPLG-KTTGKRIAGKKLVIVPILRA 80 (209)
T ss_pred ceEecCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccceeEEEEECCCC-cEEEEEecCCeEEEEEEeCC
Confidence 7999997 689999999999999999999999999999999999999999999999999 58898876 57999999999
Q ss_pred chHHHHHHHHhccCceeeeEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 023344 153 GESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231 (283)
Q Consensus 153 G~~m~~~l~~~~p~a~~G~i~i~R~~~t~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v 231 (283)
|++|++++.+.+|.+++|+++++|++.+. +..+|.++|.++++++|||+|||++||+|+.+|++.|+++|+ ++|.++
T Consensus 81 G~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~--~~I~~~ 158 (209)
T PRK00129 81 GLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKKRGA--KNIKVL 158 (209)
T ss_pred CHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHHcCC--CEEEEE
Confidence 99999999999999999999999998775 788999999999999999999999999999999999999996 899999
Q ss_pred EEeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 023344 232 NLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 282 (283)
Q Consensus 232 ~~vas~~gl~~l~~~~P~v~I~ta~iD~~ln~~~~ivPGlGd~GdR~fgt~ 282 (283)
|++++++|++++.++||+++||||+||++||++|||+||+||||||||||+
T Consensus 159 ~ll~~~~gl~~l~~~~p~v~i~~~~iD~~l~~~~yi~PGlGd~Gdr~fgt~ 209 (209)
T PRK00129 159 CLVAAPEGIKALEEAHPDVEIYTAAIDEKLNEHGYIVPGLGDAGDRLFGTK 209 (209)
T ss_pred EEecCHHHHHHHHHHCCCcEEEEEeecCCcCCCCcCCCCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999999985
No 6
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.1e-53 Score=414.78 Aligned_cols=281 Identities=68% Similarity=1.105 Sum_probs=274.4
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------------hhccccCCCCchHHHHHHHHHHhhh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVIIPRGGDNHVAIDLIVQHIHTK 62 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------------aD~iip~~~~~~~a~~~i~~~i~~~ 62 (283)
+++|+|+|+|+|.|++||+.||+.+|||++++++.|| ||+|||++++|.+++.+++++|+..
T Consensus 174 ~~~k~fvd~~~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~ 253 (473)
T KOG4203|consen 174 FTMKLFVDTDADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSI 253 (473)
T ss_pred hcceEEEecCcchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhh
Confidence 5799999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hcccccccCCCceeeecCchHHHHHhHhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeecc
Q 023344 63 LGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCK 142 (283)
Q Consensus 63 l~~~~~~~~~~~v~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~ 142 (283)
|..++.+.++.++..+++++++++++|.+||..|++.+|.++.++++|++.++++.++|+.+..+.||.+..+.|+....
T Consensus 254 L~~~~~~~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~~ 333 (473)
T KOG4203|consen 254 LAEKSYVRLYNNVLSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFCK 333 (473)
T ss_pred hhccccccccccceecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhcccccc
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999987779
Q ss_pred ceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 143 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 143 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
++|+|+|+|+|+.|+.+++.++++.++|+|+++|++.|+ +.++|.++|.+++.. |+++||+++||+++.+|++.|.++
T Consensus 334 ~i~gv~i~r~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~~-V~ll~p~~~tg~~~~~a~~~ll~~ 412 (473)
T KOG4203|consen 334 QICGVSIPRSGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISDR-VLLLDPVLATGNSAMMAIILLLDH 412 (473)
T ss_pred hhccCCCCcchhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCccccccc-eeeecchhhcchhHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998 799999999999888 999999999999999999999999
Q ss_pred CCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 023344 222 GVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 282 (283)
Q Consensus 222 G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ta~iD~~ln~~~~ivPGlGd~GdR~fgt~ 282 (283)
|+++++|.+++++++++|++++..+||.+++|++++|+.+|+++|++||+|||||||||+.
T Consensus 413 gv~~~~i~~~~ll~~~~~~~~~~~~f~~v~~v~~~~d~~~~~~~~~~pg~g~~~dryfg~~ 473 (473)
T KOG4203|consen 413 GVPEENIIFLNLLAAPQGIHEVAYAFPKVKIVTSQIDKLLNEKRYVVPGLGNFGDRYFGTD 473 (473)
T ss_pred CCcHHHhHHHHHHhhhhhhhHHHHhcccceeehhhhcccccccceECcccccchhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 7
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=100.00 E-value=2.3e-47 Score=327.64 Aligned_cols=204 Identities=46% Similarity=0.859 Sum_probs=196.0
Q ss_pred cCCCceeeecCchHHHHHhHhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEe
Q 023344 70 KIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSI 149 (283)
Q Consensus 70 ~~~~~v~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~I 149 (283)
.+..|++.++...|+..++|++||++|++.+|.|++|||+|+++||.+++|||.+++|+||.|.+|+|.++++.-|+|||
T Consensus 63 ~~G~~lkll~~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNqLPytec~VtTPTG~kYEGikf~~GNCGVSi 142 (267)
T KOG1017|consen 63 EYGSNLKLLECNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQLPYTECTVTTPTGFKYEGIKFNRGNCGVSI 142 (267)
T ss_pred HhhcccchhhhHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhcCCccceeeecCCcceeeceeecCCCcceEE
Confidence 45678999987779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHhccCceeeeEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccE
Q 023344 150 VRSGESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHI 228 (283)
Q Consensus 150 lRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I 228 (283)
+|+|++|++|++++|.+.++|+|+++.|.+|. .+++|.++|+||..++|+|+.|.+.||+|+++|+++|++||||+++|
T Consensus 143 ~RSGEAMEqgLRdCCRsIRIGKILi~sd~~t~~akV~YArfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~I 222 (267)
T KOG1017|consen 143 CRSGEAMEQGLRDCCRSIRIGKILIGSDQNTHEAKVLYARFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNI 222 (267)
T ss_pred EechHHHHHHHHHHHHHheeeeEEeccccccceeeEEEEecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccE
Confidence 99999999999999999999999999999997 79999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 023344 229 IFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 282 (283)
Q Consensus 229 ~~v~~vas~~gl~~l~~~~P~v~I~ta~iD~~ln~~~~ivPGlGd~GdR~fgt~ 282 (283)
++++++++|.|.+.+.++||.++|+|+.+.| +.| ..||..||||+
T Consensus 223 iL~sLF~tP~gak~i~~~fP~itiltseihp-------vaP--nHFgqkYFGtd 267 (267)
T KOG1017|consen 223 ILVSLFITPTGAKNITRKFPYITILTSEIHP-------VAP--NHFGQKYFGTD 267 (267)
T ss_pred EEEEeeecchhhHHHHHhCCeEEEEeeccee-------cCc--ccccchhcCCC
Confidence 9999999999999999999999999998887 556 58999999985
No 8
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.53 E-value=6.1e-15 Score=130.83 Aligned_cols=67 Identities=63% Similarity=1.042 Sum_probs=62.8
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------------hhccccCCCCchHHHHHHHHHHhhh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVIIPRGGDNHVAIDLIVQHIHTK 62 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------------aD~iip~~~~~~~a~~~i~~~i~~~ 62 (283)
||+|||||||+|+|++||+.||+.||||+++++++|| ||+|||.+..|.+|+.++...|...
T Consensus 128 ~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~~~ 207 (218)
T COG0572 128 MDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIASS 207 (218)
T ss_pred cCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHHHHH
Confidence 6999999999999999999999999999999999999 9999999999999999998888886
Q ss_pred hcccc
Q 023344 63 LGQHD 67 (283)
Q Consensus 63 l~~~~ 67 (283)
+.+..
T Consensus 208 ~~~~~ 212 (218)
T COG0572 208 LSEQN 212 (218)
T ss_pred hhhhc
Confidence 66544
No 9
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.46 E-value=9.9e-13 Score=122.73 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=99.2
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
.++++|++.++|.++.+++.+.+++++.+.+.-+|+..+... ..++|.+++|++|+|+|||++||+|+.+|++.|++.
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~--~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~ 228 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAE--VMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQE 228 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceee--eEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999887543222 347888999999999999999999999999999999
Q ss_pred CCCCccEEEEE--EeeCHHHHHHHHHhCCCcEEEEEeecC
Q 023344 222 GVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTSEIDV 259 (283)
Q Consensus 222 G~~e~~I~~v~--~vas~~gl~~l~~~~P~v~I~ta~iD~ 259 (283)
|+ ++|.+++ .++++++++++.+..++--++|..+..
T Consensus 229 Ga--~~v~~~~tH~v~~~~a~~~l~~~~~~~iv~t~ti~~ 266 (302)
T PLN02369 229 GA--REVYACATHAVFSPPAIERLSSGLFQEVIVTNTIPV 266 (302)
T ss_pred CC--CEEEEEEEeeeeCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 99 7898888 799999999999877777777776643
No 10
>PTZ00301 uridine kinase; Provisional
Probab=99.38 E-value=6.2e-13 Score=118.04 Aligned_cols=65 Identities=46% Similarity=0.733 Sum_probs=62.6
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------------hhccccCCCCchHHHHHHHHHHhhh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVIIPRGGDNHVAIDLIVQHIHTK 62 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------------aD~iip~~~~~~~a~~~i~~~i~~~ 62 (283)
+|+||||++|.|+|+.||+.||+.|||++++++++|| ||+|||++++|.+|+.++.++|...
T Consensus 127 ~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~~ 206 (210)
T PTZ00301 127 MDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHD 206 (210)
T ss_pred CCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 9999999999999999999999988
Q ss_pred hcc
Q 023344 63 LGQ 65 (283)
Q Consensus 63 l~~ 65 (283)
|+.
T Consensus 207 ~~~ 209 (210)
T PTZ00301 207 LEN 209 (210)
T ss_pred ccC
Confidence 864
No 11
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.37 E-value=6.4e-12 Score=107.66 Aligned_cols=95 Identities=16% Similarity=0.284 Sum_probs=82.5
Q ss_pred ceeEEEecccchHHHHHHHHhcc-CceeeeEEEEec--C-CC-CceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHH
Q 023344 143 KLCGVSIVRSGESMENALRACCK-GIKIGKILIHRD--G-DN-GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQL 217 (283)
Q Consensus 143 ~i~~V~IlRaG~~m~~~l~~~~p-~a~~G~i~i~R~--~-~t-~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~ 217 (283)
+.++|+|+|+|++|...+.+.++ ++.++++.+++. . .+ +....+.++|.+++|++|+|+|||++||+|+.++++.
T Consensus 27 ~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~ 106 (166)
T TIGR01203 27 PLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDTGLTLQYLLDL 106 (166)
T ss_pred CeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeCcHHHHHHHHHH
Confidence 57899999999999999999998 678999988843 2 22 2344567788899999999999999999999999999
Q ss_pred HHHcCCCCccEEEEEEeeCHHH
Q 023344 218 LIEKGVPESHIIFLNLISAPEG 239 (283)
Q Consensus 218 L~~~G~~e~~I~~v~~vas~~g 239 (283)
|+++|+ ++|.++|++..+.+
T Consensus 107 l~~~g~--~~i~~~~l~~k~~~ 126 (166)
T TIGR01203 107 LKARKP--KSLKIVTLLDKPSR 126 (166)
T ss_pred HHHCCC--CEEEEEEEEecCcc
Confidence 999998 68999999999887
No 12
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.28 E-value=6.8e-11 Score=110.53 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=91.0
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
++.++|+...+|..+...+.+.+++++++++..+|+..+.....+.+++.+++|++|+|+|||++||+|+.+|++.|+++
T Consensus 148 ~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~ 227 (304)
T PRK03092 148 DNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEA 227 (304)
T ss_pred CCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhc
Confidence 46789999999999999999999878899999999765532334778888999999999999999999999999999999
Q ss_pred CCCCccEEEEEE--eeCHHHHHHHHHh
Q 023344 222 GVPESHIIFLNL--ISAPEGIHCVCKR 246 (283)
Q Consensus 222 G~~e~~I~~v~~--vas~~gl~~l~~~ 246 (283)
|+ ++|.+++. +.++.+++++.+.
T Consensus 228 Ga--~~I~~~~tH~v~~~~a~~~l~~~ 252 (304)
T PRK03092 228 GA--KDVIIAATHGVLSGPAAERLKNC 252 (304)
T ss_pred CC--CeEEEEEEcccCChHHHHHHHHC
Confidence 99 68988885 8899999999876
No 13
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.26 E-value=2.2e-11 Score=105.12 Aligned_cols=141 Identities=24% Similarity=0.357 Sum_probs=100.4
Q ss_pred ChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhccC-----ceeee
Q 023344 97 SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCKG-----IKIGK 171 (283)
Q Consensus 97 ~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p~-----a~~G~ 171 (283)
+..++...+.+|+..+.+. |.|. .+.++|+|+|+|..+...+.+.++. +++++
T Consensus 8 s~~~i~~~i~~la~~i~~~-------------------~~~~---~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~ 65 (176)
T PRK05205 8 DAEALRRALTRIAHEIIER-------------------NKGL---DNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGE 65 (176)
T ss_pred CHHHHHHHHHHHHHHHHHH-------------------cCCC---CCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccce
Confidence 4567777777777766431 1121 2578999999999999999999963 34787
Q ss_pred EEE--EecCC--CC--ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEee-----CHHHH
Q 023344 172 ILI--HRDGD--NG--KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLIS-----APEGI 240 (283)
Q Consensus 172 i~i--~R~~~--t~--~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~va-----s~~gl 240 (283)
+.+ +|+.. ++ +...+..+|.+++|++|+|+||+++||+|+.++++.|++.|++ ++|.+++++. .+.+.
T Consensus 66 l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~-~~v~~avL~~K~~~~~~~~~ 144 (176)
T PRK05205 66 LDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRP-ARVQLAVLVDRGHRELPIRA 144 (176)
T ss_pred EEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCC-cEEEEEEEEECCCCcCCCCC
Confidence 655 45543 22 3445678888899999999999999999999999999999965 7899999987 34444
Q ss_pred HHHHHhCCCc--EEEEEeecCC
Q 023344 241 HCVCKRFPSL--KIVTSEIDVA 260 (283)
Q Consensus 241 ~~l~~~~P~v--~I~ta~iD~~ 260 (283)
+.+...+|+. +.+-..+++.
T Consensus 145 Dyvg~~ip~~~~~~~~~~~~~~ 166 (176)
T PRK05205 145 DYVGKNIPTSRDERVVVRLAEV 166 (176)
T ss_pred CEEEEECCCCCCCEEEEEecCC
Confidence 4444455542 2444444443
No 14
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.98 E-value=6.7e-09 Score=97.35 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=89.8
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
++.++|++.++|..+...+.+.+. ++...+ .+.........-..+..+++|++|+|+||+++||+|+..|++.|+++
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg-~~~~~~--~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~ 234 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLD-ADLAII--DKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKER 234 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhC-CCEEEE--EeecccceeEEEEeecccCCCCEEEEEecccCcHHHHHHHHHHHHcc
Confidence 467999999999999999998884 444433 22211111111223445789999999999999999999999999999
Q ss_pred CCCCccEEEEEE--eeCHHHHHHHHHhCCCcEEEEEeecCC
Q 023344 222 GVPESHIIFLNL--ISAPEGIHCVCKRFPSLKIVTSEIDVA 260 (283)
Q Consensus 222 G~~e~~I~~v~~--vas~~gl~~l~~~~P~v~I~ta~iD~~ 260 (283)
|+ ++|.+++. +.++++++++.+..++--++|.+++..
T Consensus 235 Ga--~~v~~~~tH~i~~~~a~~~l~~~~~~~iv~t~ti~~~ 273 (309)
T PRK01259 235 GA--KSVYAYATHPVLSGGAIERIENSVIDELVVTDSIPLS 273 (309)
T ss_pred CC--CEEEEEEEeeeCChHHHHHHhcCCCCEEEEecCcccc
Confidence 99 67888885 899999999998888888888888654
No 15
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.97 E-value=3.6e-10 Score=103.60 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=36.4
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY 37 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy 37 (283)
+|+|||||+|.|+|++|||.||++|||||+|+|++||
T Consensus 141 ~DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qi 177 (277)
T cd02029 141 ADLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTI 177 (277)
T ss_pred CCeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHH
Confidence 6999999999999999999999999999999999999
No 16
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.96 E-value=8.1e-09 Score=97.61 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=89.2
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
+++++|+.-.+|..+...+.+.+++++.+.+.-+|+..+. .....++.+++|++|+|+||+++||+|+.+|++.|+++
T Consensus 179 ~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~--~~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~ 256 (330)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNV--AEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKE 256 (330)
T ss_pred CCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCce--eeeEeccccCCCCEEEEEccccCcHHHHHHHHHHHhcc
Confidence 4789999999999999999999988888877766653322 12345666899999999999999999999999999999
Q ss_pred CCCCccEEEEE--EeeCHHHHHHHHHhCCCcEEEEE
Q 023344 222 GVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 222 G~~e~~I~~v~--~vas~~gl~~l~~~~P~v~I~ta 255 (283)
|+ ++|.+++ .+.+++++++|.+. +=-+|++.
T Consensus 257 Ga--~~v~~~~tH~v~s~~a~~~l~~~-~id~iv~t 289 (330)
T PRK02812 257 GA--KQVYACATHAVFSPPAIERLSSG-LFEEVIVT 289 (330)
T ss_pred CC--CeEEEEEEcccCChHHHHHHhhC-CCCEEEEe
Confidence 99 7898888 79999999999753 22255554
No 17
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.94 E-value=2.5e-08 Score=86.45 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=94.2
Q ss_pred ChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhccC-ceeeeEEEE
Q 023344 97 SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCKG-IKIGKILIH 175 (283)
Q Consensus 97 ~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p~-a~~G~i~i~ 175 (283)
+..++...++|++..+.+.... . ..++++|+|+++|..+..-+.+.+.- ..++++.++
T Consensus 10 ~~~~i~~~i~~lA~~I~~~~~~-------------------~--~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~s 68 (178)
T PRK15423 10 PEAEIKARIAELGRQITERYKD-------------------S--GSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTAS 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHhcc-------------------c--CCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEE
Confidence 5667888888888887663211 0 12478999999999999999998864 567888887
Q ss_pred ecC-CC---CceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHH
Q 023344 176 RDG-DN---GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG 239 (283)
Q Consensus 176 R~~-~t---~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~g 239 (283)
|.. .+ +.......+|.+++||+|+|+|+++.||.|+.++.+.|+++|+ +++.+++++--+.+
T Consensus 69 sY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~--~~v~~avL~~K~~~ 134 (178)
T PRK15423 69 SYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREP--KSLAICTLLDKPSR 134 (178)
T ss_pred EecCCCcccCceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCC--CEEEEEEEEECCCC
Confidence 764 22 2222345677789999999999999999999999999999998 78999999988776
No 18
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.94 E-value=1.1e-08 Score=86.55 Aligned_cols=117 Identities=26% Similarity=0.386 Sum_probs=94.1
Q ss_pred ChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhcc-----Cceeee
Q 023344 97 SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCK-----GIKIGK 171 (283)
Q Consensus 97 ~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p-----~a~~G~ 171 (283)
+..++++.+.||+.-++|.- .|. .+++++.|-+.|.++.+.+.+-+- ++++|.
T Consensus 8 d~~~i~RtitRia~eIiErn-------------------k~~---~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~ 65 (179)
T COG2065 8 DEAAIRRTITRIAHEIIERN-------------------KGL---DNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGE 65 (179)
T ss_pred CHHHHHHHHHHHHHHHHHHh-------------------CCC---CceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeee
Confidence 45678888888888777731 122 278999999999999988877664 455776
Q ss_pred --EEEEecCCCC-----ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeC
Q 023344 172 --ILIHRDGDNG-----KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA 236 (283)
Q Consensus 172 --i~i~R~~~t~-----~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas 236 (283)
|.++||+-+. |...-..+|.+++||.|+|+|+++.||.|+.+|++.|.++|.| +.|.+++++--
T Consensus 66 lDIt~yRDDl~~~~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRP-a~I~LavLVDR 136 (179)
T COG2065 66 LDITLYRDDLTQKGPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRP-AKIQLAVLVDR 136 (179)
T ss_pred EEeEEeechhhhcCccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCc-ceEEEEEEEcC
Confidence 5778996542 3445578888999999999999999999999999999999998 79999999863
No 19
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.93 E-value=5.7e-10 Score=111.72 Aligned_cols=69 Identities=23% Similarity=0.432 Sum_probs=63.2
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------------hhccc-----c-CCCCchHHH----
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVII-----P-RGGDNHVAI---- 52 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------------aD~ii-----p-~~~~~~~a~---- 52 (283)
+|++||||+|.|.||+||+.||+.+|||+++++++|| ||+|| | ++.+|.+++
T Consensus 177 lDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~ 256 (656)
T PLN02318 177 LDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSS 256 (656)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCC
Confidence 6999999999999999999999999999999999999 99999 5 567888888
Q ss_pred -HHHHHHHhhhhcccccc
Q 023344 53 -DLIVQHIHTKLGQHDLC 69 (283)
Q Consensus 53 -~~i~~~i~~~l~~~~~~ 69 (283)
++.++||+..|.+.+..
T Consensus 257 ~~~~~~~i~~~L~~~~~~ 274 (656)
T PLN02318 257 RSVTVEQIKAVLSEDHTE 274 (656)
T ss_pred ccccHHHHHHHhhhcccc
Confidence 99999999999986543
No 20
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.91 E-value=1.6e-08 Score=97.22 Aligned_cols=111 Identities=21% Similarity=0.301 Sum_probs=86.3
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCC---C--ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHH
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN---G--KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQ 216 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t---~--~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~ 216 (283)
.+.++|+.-.+|......+.+.+. ++...+-=+|+..+ + +..++..+|.+++|++|+|+|||++||+|+..|++
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg-~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~ 285 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLG-VDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAK 285 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhC-CCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHH
Confidence 367899999999999888888774 44544444444211 2 34566777768999999999999999999999999
Q ss_pred HHHHcCCCCccEEEEEEeeC-HHHHHHHHHhCCC--c-EEEEE
Q 023344 217 LLIEKGVPESHIIFLNLISA-PEGIHCVCKRFPS--L-KIVTS 255 (283)
Q Consensus 217 ~L~~~G~~e~~I~~v~~vas-~~gl~~l~~~~P~--v-~I~ta 255 (283)
.|+++|+ ++|.+++..+. ++|++++.++||+ + +|++.
T Consensus 286 ~Lk~~GA--~~V~~~~tH~vf~~a~~~l~~~~~~g~i~~iv~T 326 (382)
T PRK06827 286 ELKSRGA--KKIIVAATFGFFTNGLEKFDKAYEEGYFDRIIGT 326 (382)
T ss_pred HHHHcCC--CEEEEEEEeecChHHHHHHHhhcccCCCCEEEEe
Confidence 9999999 78999997764 5999999988765 2 55554
No 21
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.89 E-value=5.3e-08 Score=84.51 Aligned_cols=121 Identities=14% Similarity=0.159 Sum_probs=88.8
Q ss_pred cCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhcc-Cceeee
Q 023344 93 DRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCK-GIKIGK 171 (283)
Q Consensus 93 d~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p-~a~~G~ 171 (283)
+.--+..+|...+++++..+.+.. . + .+.++|++.++|..+...+.+.+. ....+.
T Consensus 14 ~~~~s~~~i~~~i~~la~~i~~~~----~---------------~----~~~viV~i~~gg~~~A~~La~~l~~~~~~~~ 70 (181)
T PRK09162 14 DCLVSAAEVEAAIDRMADEITADL----A---------------D----ENPLVLCVMGGGLVFTGQLLPRLDFPLEFDY 70 (181)
T ss_pred cEeecHHHHHHHHHHHHHHHHHHc----C---------------C----CCeEEEEECCCcHHHHHHHHHHcCCCcccCE
Confidence 344456677778888887776532 1 0 134789999999999999999886 234555
Q ss_pred EEEEecCCCC---ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHH
Q 023344 172 ILIHRDGDNG---KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPE 238 (283)
Q Consensus 172 i~i~R~~~t~---~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~ 238 (283)
+...+...+. .......++.+++|++|+|+|+++.||.|+.++++.|++.|+ ++|.++++..-+.
T Consensus 71 l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga--~~V~~avL~~k~~ 138 (181)
T PRK09162 71 LHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGA--AEVYSAVLVDKTH 138 (181)
T ss_pred EEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCC--CEEEEEEEEEcCc
Confidence 6555554322 122334455678999999999999999999999999999998 7898888776544
No 22
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.88 E-value=4.1e-08 Score=92.00 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=86.9
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
++.++|+...+|..+...+.+.+. ++.+.+.-.|...++ ......++.+++|++|+|+||+++||+|+..+++.|+++
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg-~~~~~i~k~r~~~~~-~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~ 236 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALG-CPLAIIDKRRISATN-EVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSA 236 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhC-CCEEEEEEEecCCCC-EEEEEecccccCCCEEEEEccccCCHHHHHHHHHHHHhc
Confidence 467899999999999999998875 666666555653222 334567788899999999999999999999999999999
Q ss_pred CCCCccEEEEEE--eeCHHHHHHHHHhCCCcEEEE
Q 023344 222 GVPESHIIFLNL--ISAPEGIHCVCKRFPSLKIVT 254 (283)
Q Consensus 222 G~~e~~I~~v~~--vas~~gl~~l~~~~P~v~I~t 254 (283)
|+ ++|++++. +.++++++++.+...+--++|
T Consensus 237 ga--~~v~~~~th~v~~~~a~~~l~~~~~~~iv~t 269 (308)
T TIGR01251 237 GA--KRVIAAATHGVFSGPAIERIANAGVEEVIVT 269 (308)
T ss_pred CC--CEEEEEEEeeecCcHHHHHHHhCCCCEEEEe
Confidence 99 68988884 579999999988743333333
No 23
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.87 E-value=2.8e-08 Score=88.33 Aligned_cols=126 Identities=12% Similarity=0.216 Sum_probs=95.8
Q ss_pred CChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhcc----Cceeee
Q 023344 96 ISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCK----GIKIGK 171 (283)
Q Consensus 96 T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p----~a~~G~ 171 (283)
-+..++...+++|+..+.+..- .+. +.+ .+++++|.|||+|+.|..-|.+.+. ...+++
T Consensus 28 is~e~I~~~i~~LA~~I~~~~~-~~~--------~~~--------~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdf 90 (211)
T PTZ00271 28 VTQEQVWAATAKCAKKIAEDYR-SFK--------LTT--------ENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEF 90 (211)
T ss_pred cCHHHHHHHHHHHHHHHHHHhh-hcc--------ccC--------CCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEE
Confidence 4667788888888888865321 110 111 1367899999999999888777663 367888
Q ss_pred EEEEecC-CC---CceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHH
Q 023344 172 ILIHRDG-DN---GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGI 240 (283)
Q Consensus 172 i~i~R~~-~t---~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl 240 (283)
+.+.+.. .+ +.......++.+++||+|||+|+++.||.|+.++++.|+++|+ ++|.+++++--+.+-
T Consensus 91 i~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p--~svk~avL~dK~~~r 161 (211)
T PTZ00271 91 ICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKP--ASLKTVVLLDKPSGR 161 (211)
T ss_pred EEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCC--CEEEEEEEEEcccCC
Confidence 8887763 22 2222345677789999999999999999999999999999987 799999999987763
No 24
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=98.86 E-value=1e-08 Score=82.33 Aligned_cols=87 Identities=25% Similarity=0.271 Sum_probs=64.9
Q ss_pred EEEecccchHHHHHHHHhccCceeeeEEE--------EecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHH
Q 023344 146 GVSIVRSGESMENALRACCKGIKIGKILI--------HRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQL 217 (283)
Q Consensus 146 ~V~IlRaG~~m~~~l~~~~p~a~~G~i~i--------~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~ 217 (283)
+|++.++|.++...+.+.+.......... .....+.....+...+..++|++|+|+||+++||+|+..+++.
T Consensus 31 ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~ 110 (125)
T PF00156_consen 31 IVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDTGGTLKEAIEL 110 (125)
T ss_dssp EEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESSSHHHHHHHHH
T ss_pred EEeehhccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEcccHHHHHHHHH
Confidence 89999999999999988887533322211 1111122334445556678999999999999999999999999
Q ss_pred HHHcCCCCccEEEEEEe
Q 023344 218 LIEKGVPESHIIFLNLI 234 (283)
Q Consensus 218 L~~~G~~e~~I~~v~~v 234 (283)
|++.|+ +.|.+++++
T Consensus 111 L~~~g~--~~v~~~vl~ 125 (125)
T PF00156_consen 111 LKEAGA--KVVGVAVLV 125 (125)
T ss_dssp HHHTTB--SEEEEEEEE
T ss_pred HHhCCC--cEEEEEEEC
Confidence 999998 677777764
No 25
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.81 E-value=7.8e-08 Score=89.18 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=79.2
Q ss_pred ceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcC
Q 023344 143 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 222 (283)
Q Consensus 143 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G 222 (283)
+.++|++.++|..+...+.+.+. .+...+.-.|. +..+........+++|++|+|+||+++||+|+.++.+.|+++|
T Consensus 155 ~~vvv~pd~Ga~~~a~~lA~~l~-~~~~~i~k~r~--~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~G 231 (285)
T PRK00934 155 DPLVLAPDKGALELAKEAAEILG-CEYDYLEKTRI--SPTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQG 231 (285)
T ss_pred CCEEEEeCCchHHHHHHHHHHhC-CCEEEEEEEec--CCCeEEEeccccccCCCEEEEEcCccccHHHHHHHHHHHHHCC
Confidence 45788999999999999988885 44433333332 2222222222236889999999999999999999999999999
Q ss_pred CCCccEEEEEE--eeCHHHHHHHHHhCCCcEEEEE
Q 023344 223 VPESHIIFLNL--ISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 223 ~~e~~I~~v~~--vas~~gl~~l~~~~P~v~I~ta 255 (283)
+ ++|.++++ +.++++.+++.+..- -+||+.
T Consensus 232 A--~~V~~~~~H~i~~~~a~~~l~~~~i-~~i~~t 263 (285)
T PRK00934 232 A--KKVYVACVHPVLVGDAILKLYNAGV-DEIIVT 263 (285)
T ss_pred C--CEEEEEEEeeccCcHHHHHHHhCCC-CEEEEc
Confidence 9 68888885 789999999987521 255554
No 26
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.80 E-value=3.9e-08 Score=89.03 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=89.7
Q ss_pred CCChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhccC--------
Q 023344 95 GISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCKG-------- 166 (283)
Q Consensus 95 ~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p~-------- 166 (283)
=-+..+.+..++||+..+.+.- .+ ++++++.||++|..|...|.+.+..
T Consensus 57 Lis~~~I~~rI~~LA~~I~~dy-------------------~~----~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~ 113 (241)
T PTZ00149 57 LLPNGLIKDRVEKLAYDIKQVY-------------------GN----EELHILCILKGSRGFFSALVDYLNRIHNYSSTE 113 (241)
T ss_pred EeCHHHHHHHHHHHHHHHHHHc-------------------CC----CCeEEEEECCCCHHHHHHHHHHHhhhhhccccc
Confidence 3567778888888888776532 11 2578999999999988776666542
Q ss_pred --cee---eeEEEEecCCC---Cc-eeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCH
Q 023344 167 --IKI---GKILIHRDGDN---GK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP 237 (283)
Q Consensus 167 --a~~---G~i~i~R~~~t---~~-~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~ 237 (283)
.++ ++|.+.+...+ +. ++. ...-.+++|++|+|+||++.||.|+.++++.|++.|+ ++|.+++++..+
T Consensus 114 ~~~~~~~~dfi~vsSY~~~~s~g~v~i~-~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~--~~V~va~L~~K~ 190 (241)
T PTZ00149 114 SPKPPYQEHYVRVKSYCNDESTGKLEIV-SDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEP--KTIRIATLFEKR 190 (241)
T ss_pred cCcccccccEEEEEEccCCCcCCceEEe-cccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCC--CEEEEEEEEecC
Confidence 234 88888766433 32 333 3333368999999999999999999999999999998 789999999877
Q ss_pred HH
Q 023344 238 EG 239 (283)
Q Consensus 238 ~g 239 (283)
.+
T Consensus 191 ~~ 192 (241)
T PTZ00149 191 TP 192 (241)
T ss_pred cc
Confidence 65
No 27
>PRK15453 phosphoribulokinase; Provisional
Probab=98.79 E-value=5.6e-09 Score=96.40 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=36.3
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY 37 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy 37 (283)
+|+||||+++.|+|++|||.||++|||||.|+|++||
T Consensus 147 ~DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsVi~qi 183 (290)
T PRK15453 147 VDLLIGVVPIVNLEWIQKIHRDTSERGYSREAVMDTI 183 (290)
T ss_pred CCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHHHHHH
Confidence 6999999999999999999999999999999999999
No 28
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=98.77 E-value=7.9e-08 Score=84.09 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=88.0
Q ss_pred CChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhcc----Cceeee
Q 023344 96 ISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCK----GIKIGK 171 (283)
Q Consensus 96 T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p----~a~~G~ 171 (283)
.+..++...+.+|+..+.+. ++ + .+.++|+|+++|.++...+.+.+. ...+.+
T Consensus 12 is~~~I~~~i~~lA~~I~~~----~~---------------~----~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~f 68 (189)
T PLN02238 12 WTAEDISARVAELAAQIASD----YA---------------G----KSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDF 68 (189)
T ss_pred cCHHHHHHHHHHHHHHHHHH----cC---------------C----CCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEE
Confidence 34556667777766666432 11 1 136799999999999988888776 355666
Q ss_pred EEEEecCC-C---C-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHH
Q 023344 172 ILIHRDGD-N---G-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG 239 (283)
Q Consensus 172 i~i~R~~~-t---~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~g 239 (283)
+-.++... + + +++....++.+++|++|+|+|+++.||.|+.++++.|++.|+ +.|.+++++.-+..
T Consensus 69 i~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~--~~v~~avL~dK~~~ 139 (189)
T PLN02238 69 IRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGA--ASVSVCALLDKRAR 139 (189)
T ss_pred EEeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCC--CEEEEEEEEECCcc
Confidence 76665532 2 2 333333666789999999999999999999999999999998 78999998887654
No 29
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.76 E-value=1.4e-08 Score=89.17 Aligned_cols=65 Identities=55% Similarity=0.945 Sum_probs=60.7
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------------hhccccCCCCchHHHHHHHHHHhhh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVIIPRGGDNHVAIDLIVQHIHTK 62 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------------aD~iip~~~~~~~a~~~i~~~i~~~ 62 (283)
+|++|||++|.++|+.||+.||..+||++.++++++| ||+||+++++|+.+++.+.++|.+.
T Consensus 126 ~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~ 205 (209)
T PRK05480 126 MDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQL 205 (209)
T ss_pred hceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999887 9999999998999999999999987
Q ss_pred hcc
Q 023344 63 LGQ 65 (283)
Q Consensus 63 l~~ 65 (283)
+.+
T Consensus 206 ~~~ 208 (209)
T PRK05480 206 LEK 208 (209)
T ss_pred hhc
Confidence 764
No 30
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.70 E-value=2.6e-08 Score=86.64 Aligned_cols=61 Identities=82% Similarity=1.261 Sum_probs=56.5
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------------hhccccCCCCchHHHHHHHHHHhh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVIIPRGGDNHVAIDLIVQHIHT 61 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------------aD~iip~~~~~~~a~~~i~~~i~~ 61 (283)
+|++|||++|.++|+.||+.||..+||++.+.++++| ||+||+++.+++.|+.++.++++.
T Consensus 119 ~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~~~~~~~ 197 (198)
T cd02023 119 MDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIKS 197 (198)
T ss_pred cCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCCCccHHHHHHHHHHhc
Confidence 5899999999999999999999999999999888777 999999999988999999998874
No 31
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.68 E-value=6.6e-08 Score=85.04 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=60.1
Q ss_pred cCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEEEeecC
Q 023344 188 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDV 259 (283)
Q Consensus 188 ~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ta~iD~ 259 (283)
+-+.++++++|||+|+.+|||+||.+|++.++++++ ++|++++++++++..+.+..... +|+|..+-.
T Consensus 117 ~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~--~~IviAVPV~p~~a~~~l~s~~D--~vvc~~~P~ 184 (220)
T COG1926 117 RPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGP--KEIVIAVPVAPEDAAAELESEAD--EVVCLYMPA 184 (220)
T ss_pred CCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCC--ceEEEEcccCCHHHHHHHHhhcC--eEEEEcCCc
Confidence 444478999999999999999999999999999998 79999999999999999998876 777765544
No 32
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.62 E-value=4.5e-07 Score=85.43 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=81.5
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
.+.++|+...+|......+.+.+..++...+.=+|+..+... -..+..+++||+|+|+||++.||+|+.+|.+.|+++
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~--~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~ 243 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVAT--VMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQR 243 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceE--EEecccCCCCCEEEEEecccCchHHHHHHHHHHHHC
Confidence 467899999999999999999886555543333343322212 233456899999999999999999999999999999
Q ss_pred CCCCccEEEEE--EeeCHHHHHHHHHhCCCcEEEEE
Q 023344 222 GVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 222 G~~e~~I~~v~--~vas~~gl~~l~~~~P~v~I~ta 255 (283)
|+ ++|.+++ .+-+..+.+++.+. +==+||+.
T Consensus 244 GA--~~V~~~~THgvfs~~a~~~l~~s-~i~~iv~T 276 (319)
T PRK04923 244 GA--LKVVAYITHPVLSGPAVDNINNS-QLDELVVT 276 (319)
T ss_pred CC--CEEEEEEECcccCchHHHHHhhC-CCCEEEEe
Confidence 99 6788777 46678889999653 21255554
No 33
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=98.61 E-value=3.5e-07 Score=78.40 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=68.8
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCC-------------CceeEeccCCCCCCCcEEEEEcCcccchHHH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN-------------GKQLIYEKLPNDISERHVLLLDPVLATGNSA 211 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t-------------~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~ 211 (283)
+++++...|.++...+.+.+. ++. +.+.+.... +...++.+-+...+|++|+|+||+++||+|+
T Consensus 49 ~ivgi~~~G~~~A~~la~~L~-~~~--~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl 125 (169)
T TIGR01090 49 YIVGPEARGFIFGAALAYKLG-VGF--VPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTA 125 (169)
T ss_pred EEEeehhccHHHHHHHHHHHC-CCE--EEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHH
Confidence 677888999999888877764 332 223322110 1111222222345899999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEEE--eeCHHHHHHHHHhCCCcEEEE
Q 023344 212 NQAIQLLIEKGVPESHIIFLNL--ISAPEGIHCVCKRFPSLKIVT 254 (283)
Q Consensus 212 ~~ai~~L~~~G~~e~~I~~v~~--vas~~gl~~l~~~~P~v~I~t 254 (283)
.++++.|++.|+. .+.++++ .++++|.+++.+. +.+++
T Consensus 126 ~~a~~~L~~~Ga~--~v~~~~l~~~~~~~g~~~i~~~---~~~~s 165 (169)
T TIGR01090 126 EATDELIRKLGGE--VVEAAFLIELKDLNGRAKLEPN---VPVFS 165 (169)
T ss_pred HHHHHHHHHcCCE--EEEEEEEEEccccChHHHhccC---CceEE
Confidence 9999999999994 4444443 4456899999774 45554
No 34
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.61 E-value=4.4e-07 Score=77.90 Aligned_cols=96 Identities=21% Similarity=0.367 Sum_probs=82.3
Q ss_pred cceeEEEecccchHHHHHHHHhcc-CceeeeEEEEecCCC----CceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHH
Q 023344 142 KKLCGVSIVRSGESMENALRACCK-GIKIGKILIHRDGDN----GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQ 216 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p-~a~~G~i~i~R~~~t----~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~ 216 (283)
+++.+|+||+++.+|.--+.+.+. +..+-++.++|.... +.......+-.+++||.|+|+|+++.||.|+..+.+
T Consensus 35 ~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~ 114 (178)
T COG0634 35 KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRD 114 (178)
T ss_pred CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccChhHHHHHH
Confidence 468899999999999877777666 788889999877432 234556788889999999999999999999999999
Q ss_pred HHHHcCCCCccEEEEEEeeCHHH
Q 023344 217 LLIEKGVPESHIIFLNLISAPEG 239 (283)
Q Consensus 217 ~L~~~G~~e~~I~~v~~vas~~g 239 (283)
.|+.+|+ +++.+++++-.|++
T Consensus 115 ~l~~r~a--~sv~i~tLldK~~~ 135 (178)
T COG0634 115 LLKERGA--KSVRIATLLDKPER 135 (178)
T ss_pred HHHhCCC--CeEEEEEEeeCccc
Confidence 9999999 79999999988876
No 35
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.60 E-value=7.9e-08 Score=84.51 Aligned_cols=63 Identities=59% Similarity=0.946 Sum_probs=59.4
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------------hhccccCCCCchHHHHHHHHHHhhh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVIIPRGGDNHVAIDLIVQHIHTK 62 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------------aD~iip~~~~~~~a~~~i~~~i~~~ 62 (283)
+|++|||+++.++|+.||+.||..+||++.+.++.+| ||+||+++++++.++..+.+.|+..
T Consensus 126 ~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~~ 205 (207)
T TIGR00235 126 MDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKHL 205 (207)
T ss_pred CCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999888 9999999999999999999999876
Q ss_pred h
Q 023344 63 L 63 (283)
Q Consensus 63 l 63 (283)
+
T Consensus 206 ~ 206 (207)
T TIGR00235 206 L 206 (207)
T ss_pred h
Confidence 5
No 36
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.59 E-value=6.3e-07 Score=84.52 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=79.1
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
.+.++|+..-+|......+.+.+. .+...+--+|.+.+.....-..+-.+++|++|+|+||++.||+|+..|.+.|+++
T Consensus 165 ~~~vvVsPd~G~~~~A~~lA~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~ 243 (320)
T PRK02269 165 DDVVVVSPDHGGVTRARKLAQFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEA 243 (320)
T ss_pred CCcEEEEECccHHHHHHHHHHHhC-CCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHHHHHHHHHHHHC
Confidence 357899999999999999988875 3333222233332221111223345789999999999999999999999999999
Q ss_pred CCCCccEEEEE--EeeCHHHHHHHHHhCCCcEEEEE
Q 023344 222 GVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 222 G~~e~~I~~v~--~vas~~gl~~l~~~~P~v~I~ta 255 (283)
|+ ++|.+++ .+.+..+++++.+. +=-+||+.
T Consensus 244 GA--~~V~~~~tHglf~~~a~~~l~~~-~i~~iv~T 276 (320)
T PRK02269 244 GA--TEVYASCTHPVLSGPALDNIQKS-AIEKLVVL 276 (320)
T ss_pred CC--CEEEEEEECcccCchHHHHHHhC-CCCEEEEe
Confidence 99 6788877 46788999999764 11245544
No 37
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.57 E-value=8.5e-07 Score=83.74 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=80.2
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
.++++|+...+|..+...+.+.+. +++..+.-.|...... -..+..+++||+|+|+||++.||+|+..|.+.|+++
T Consensus 169 ~~~vvV~pd~Ga~~~A~~la~~L~-~~~~~~~~~r~~~~~~---~~~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~~ 244 (323)
T PRK02458 169 SDVVVVSPKNSGIKRARSLAEYLD-APIAIIDYAQDDSERE---EGYIIGDVAGKKAILIDDILNTGKTFAEAAKIVERE 244 (323)
T ss_pred CceEEEEECCChHHHHHHHHHHhC-CCEEEEEEecCCCcce---eeccccccCCCEEEEEcceeCcHHHHHHHHHHHHhC
Confidence 478999999999999999999874 4444333333221111 123556899999999999999999999999999999
Q ss_pred CCCCccEEEEE--EeeCHHHHHHHHHhCCCcEEEEE
Q 023344 222 GVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 222 G~~e~~I~~v~--~vas~~gl~~l~~~~P~v~I~ta 255 (283)
|+ ++|.+++ .+.+..+.++|.+. +==+||+.
T Consensus 245 GA--~~V~~~~tHgif~~~a~~~l~~s-~i~~iv~T 277 (323)
T PRK02458 245 GA--TEIYAVASHGLFAGGAAEVLENA-PIKEILVT 277 (323)
T ss_pred CC--CcEEEEEEChhcCchHHHHHhhC-CCCEEEEE
Confidence 99 6888888 46788889999774 22255554
No 38
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.54 E-value=1.9e-06 Score=80.68 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=76.2
Q ss_pred ceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcC
Q 023344 143 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 222 (283)
Q Consensus 143 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G 222 (283)
+.++|+..-+|..+...+.+.+. ++...+.-.|.......... ..-.+++|++|+|+||+++||+|+..|.+.|+++|
T Consensus 161 ~~vVVsPd~g~~~~a~~la~~l~-~~~~~~~K~R~~~~~~~~~~-~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~G 238 (301)
T PRK07199 161 RPLLIGPDEESEQWVAAVAERAG-APHAVLRKTRHGDRDVEISL-PDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAG 238 (301)
T ss_pred CcEEEEeCCChHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEEe-ccCcccCCCEEEEEecccCcHHHHHHHHHHHHHCC
Confidence 56788888888888888887764 33433333332221122221 22245799999999999999999999999999999
Q ss_pred CCCccEEEEE--EeeCHHHHHHHHHhCCCcEEEEE
Q 023344 223 VPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 223 ~~e~~I~~v~--~vas~~gl~~l~~~~P~v~I~ta 255 (283)
+ ++|.+++ .+.+..+.+++.+.. =-+|++.
T Consensus 239 A--~~V~~~~tHgvfs~~a~~~l~~~~-i~~iv~T 270 (301)
T PRK07199 239 A--ASPDCVVVHALFAGDAYSALAAAG-IARVVST 270 (301)
T ss_pred C--cEEEEEEEeeeCChHHHHHHHhCC-CCEEEEe
Confidence 9 6888888 566889999997642 1245544
No 39
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=98.53 E-value=8.9e-07 Score=76.24 Aligned_cols=96 Identities=23% Similarity=0.188 Sum_probs=68.8
Q ss_pred eeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCC-------------ceeEeccCCCCCCCcEEEEEcCcccchHH
Q 023344 144 LCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG-------------KQLIYEKLPNDISERHVLLLDPVLATGNS 210 (283)
Q Consensus 144 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~-------------~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t 210 (283)
-++|++..+|.++...+.+.+. .+. +.+.+..... ...++..-....+|++|+|+||+++||+|
T Consensus 53 d~Ivgv~~~Gi~~a~~la~~l~-~p~--~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~T 129 (175)
T PRK02304 53 DKIVGIEARGFIFGAALAYKLG-IGF--VPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGT 129 (175)
T ss_pred CEEEEEccchHHHHHHHHHHhC-CCE--EEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHH
Confidence 3577889999999998888864 333 3343332211 11222222223689999999999999999
Q ss_pred HHHHHHHHHHcCCCCccEEEEEEeeCHH--HHHHHH
Q 023344 211 ANQAIQLLIEKGVPESHIIFLNLISAPE--GIHCVC 244 (283)
Q Consensus 211 ~~~ai~~L~~~G~~e~~I~~v~~vas~~--gl~~l~ 244 (283)
+.++++.|+++|+ +.+.+++++..++ |.+++.
T Consensus 130 l~~~~~~l~~~Ga--~~v~v~vl~~~~~~~g~~~l~ 163 (175)
T PRK02304 130 LEAAIKLLERLGA--EVVGAAFVIELPDLGGREKLE 163 (175)
T ss_pred HHHHHHHHHHcCC--EEEEEEEEEEcccccchhhcC
Confidence 9999999999998 5677888888665 788876
No 40
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=98.48 E-value=1.6e-06 Score=80.91 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=73.2
Q ss_pred eeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCC
Q 023344 144 LCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 223 (283)
Q Consensus 144 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~ 223 (283)
.++|+==.+|..-.+.+.+.+... ...|-=.|+ .+..+.--..+-.+++||+|+|+|+||+||+|++.|.+.|+++|+
T Consensus 165 ~vVVSPD~Ggv~RAr~~A~~L~~~-~a~i~K~R~-~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GA 242 (314)
T COG0462 165 PVVVSPDKGGVKRARALADRLGAP-LAIIDKRRD-SSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGA 242 (314)
T ss_pred cEEECCCccHHHHHHHHHHHhCCC-EEEEEEeec-CCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCC
Confidence 344444456666667777766544 655665665 333344455666789999999999999999999999999999999
Q ss_pred CCccEEEEE--EeeCHHHHHHHHHh
Q 023344 224 PESHIIFLN--LISAPEGIHCVCKR 246 (283)
Q Consensus 224 ~e~~I~~v~--~vas~~gl~~l~~~ 246 (283)
++|+++| .+-+....+++.+.
T Consensus 243 --k~V~a~~tH~vfs~~a~~~l~~~ 265 (314)
T COG0462 243 --KKVYAAATHGVFSGAALERLEAS 265 (314)
T ss_pred --CeEEEEEEchhhChHHHHHHhcC
Confidence 7898888 35567788888765
No 41
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.48 E-value=8.8e-08 Score=83.39 Aligned_cols=37 Identities=54% Similarity=0.991 Sum_probs=32.6
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY 37 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy 37 (283)
+|++||||+|.|+||.||+.||+.+|||+.++++++|
T Consensus 127 ~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~~~~~ 163 (194)
T PF00485_consen 127 FDLKIFLDADEDLRLERRIQRDVAERGRSPEEVIAQY 163 (194)
T ss_dssp -SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHHHHHH
T ss_pred ceeEEEecccHHHHHHHHhhhhccccCCcceeEEEEe
Confidence 6999999999999999999999999999999999999
No 42
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.42 E-value=3.9e-06 Score=79.53 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=74.3
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
.++++|+.=++|......+.+.+. .+...+--.|... .... -..+..+++|++|+|+||++.||+|+.+|.+.|+++
T Consensus 168 ~~~vvVsPD~gg~~rA~~lA~~lg-~~~~vi~K~r~~~-~~~~-~~~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~ 244 (332)
T PRK00553 168 KDLVVVSPDYGGVKRARLIAESLE-LPLAIIDKRRPKH-NVAE-SINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQ 244 (332)
T ss_pred CCeEEEEECCCcHHHHHHHHHHhC-CCEEEEEEecCCc-ceEe-eEEeeccCCCCEEEEEeccccchHHHHHHHHHHHHc
Confidence 467889999999999998888774 3333222222211 1111 223345789999999999999999999999999999
Q ss_pred CCCCccEEEEE--EeeCHHHHHHHHHh
Q 023344 222 GVPESHIIFLN--LISAPEGIHCVCKR 246 (283)
Q Consensus 222 G~~e~~I~~v~--~vas~~gl~~l~~~ 246 (283)
|+ ++|.+++ .+.+..+.+++.++
T Consensus 245 GA--~~V~~~atHglf~~~a~~~l~~~ 269 (332)
T PRK00553 245 KA--KKVCVMATHGLFNKNAIQLFDEA 269 (332)
T ss_pred CC--cEEEEEEEeeecCchHHHHHHhc
Confidence 99 6787777 46788999999765
No 43
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.37 E-value=4.7e-06 Score=73.38 Aligned_cols=102 Identities=13% Similarity=0.226 Sum_probs=71.2
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCC-CceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCC
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN-GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 223 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t-~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~ 223 (283)
++|++.++|.++...+.+.+. ++. +.+++.... +.... ...+ ...|++|+|+|++++||+|+..+++.|++.|+
T Consensus 67 ~Ivgi~~gG~~~A~~la~~L~-~~~--~~~rk~~~~~g~~~~-~~~~-~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga 141 (202)
T PRK00455 67 VVAGPATGGIPLAAAVARALD-LPA--IFVRKEAKDHGEGGQ-IEGR-RLFGKRVLVVEDVITTGGSVLEAVEAIRAAGA 141 (202)
T ss_pred EEEecccCcHHHHHHHHHHhC-CCE--EEEecccCCCCCCce-EEcc-CCCCCEEEEEecccCCcHHHHHHHHHHHHcCC
Confidence 678999999999999888874 333 344433221 11111 1122 35699999999999999999999999999998
Q ss_pred CCccEEEEEEeeCHHHHHHHHHhCCCcEEEE
Q 023344 224 PESHIIFLNLISAPEGIHCVCKRFPSLKIVT 254 (283)
Q Consensus 224 ~e~~I~~v~~vas~~gl~~l~~~~P~v~I~t 254 (283)
+.+-+++++.-.+|-++..+.+ ++.++.
T Consensus 142 --~~v~~~vlv~~~~~~~~~~~~~-g~~~~s 169 (202)
T PRK00455 142 --EVVGVAVIVDRQSAAQEVFADA-GVPLIS 169 (202)
T ss_pred --EEEEEEEEEECcchHHHHHHhc-CCcEEE
Confidence 5677788888756656555554 344443
No 44
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=98.33 E-value=5e-06 Score=73.31 Aligned_cols=95 Identities=18% Similarity=0.282 Sum_probs=63.8
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEec-CCCC--ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRD-GDNG--KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~-~~t~--~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
++|++-++|.++...+...+. .+...+.-.+. +.+. +.-.+......++|++|+|+|++++||+|+.++++.|+++
T Consensus 88 ~Ivgi~~gG~~~A~~lA~~L~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~ 166 (200)
T PRK02277 88 VVVGIAKSGVPLATLVADELG-KDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEH 166 (200)
T ss_pred EEEeeccCCHHHHHHHHHHhC-CCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHHHHHHHHHc
Confidence 678899999999999888774 33322211111 0111 1222222223578999999999999999999999999999
Q ss_pred CCCCccEEEEEEeeCHHHHHHH
Q 023344 222 GVPESHIIFLNLISAPEGIHCV 243 (283)
Q Consensus 222 G~~e~~I~~v~~vas~~gl~~l 243 (283)
|+ +.+.+++++. ..|.+++
T Consensus 167 Ga--~~v~v~vlvd-k~g~~~~ 185 (200)
T PRK02277 167 GG--KPVAVVVLID-KSGIDEI 185 (200)
T ss_pred CC--EEEEEEEEEE-Ccchhhh
Confidence 98 4455555554 4577665
No 45
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=98.30 E-value=9.6e-06 Score=69.81 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=70.7
Q ss_pred eEEEecccchHHHHHHHHhccCc--eeeeEEEEecCCC-CceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 023344 145 CGVSIVRSGESMENALRACCKGI--KIGKILIHRDGDN-GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a--~~G~i~i~R~~~t-~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
+++.+-++|.++...+...+... .+-.+.+++.... +...+.. ....+|++|+|+|++++||+|+.+|++.|++.
T Consensus 57 ~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~~~~--g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~ 134 (173)
T TIGR00336 57 VIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGNIE--GELLEGDKVVVVEDVITTGTSILEAVEIIQAA 134 (173)
T ss_pred EEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCCcee--cCCCCCCEEEEEeccccChHHHHHHHHHHHHc
Confidence 57888999999999988887422 2222333332211 2111111 22347899999999999999999999999999
Q ss_pred CCCCccEEEEEEeeCHH--HHHHHHHhCCCcEEEE
Q 023344 222 GVPESHIIFLNLISAPE--GIHCVCKRFPSLKIVT 254 (283)
Q Consensus 222 G~~e~~I~~v~~vas~~--gl~~l~~~~P~v~I~t 254 (283)
|+ +-+-+++++.-.+ |-+++.+.+ ++.++.
T Consensus 135 Ga--~v~~~~vlvdr~~~~~~~~l~~~~-gv~~~s 166 (173)
T TIGR00336 135 GG--QVAGVIIAVDRQERSAGQEFEKEY-GLPVIS 166 (173)
T ss_pred CC--eEEEEEEEEecCchhHHHHHHHhc-CCeEEE
Confidence 98 4556666666544 788886643 466554
No 46
>PLN02293 adenine phosphoribosyltransferase
Probab=98.29 E-value=9.1e-06 Score=71.05 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=63.9
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCCC-c------------eeEeccCCCCC-CCcEEEEEcCcccchHH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG-K------------QLIYEKLPNDI-SERHVLLLDPVLATGNS 210 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~-~------------~~~y~~lP~~i-~~~~Vil~Dp~iaTG~t 210 (283)
+++++-.+|.++...+...+. + +++.+++..... + ...+..- ..+ +|++|+|+||+++||+|
T Consensus 65 ~Ivg~e~~Gi~lA~~lA~~Lg-~--p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~-~~i~~G~rVlIVDDvitTG~T 140 (187)
T PLN02293 65 VVAGIEARGFIFGPPIALAIG-A--KFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHV-GAVEPGERALVIDDLIATGGT 140 (187)
T ss_pred EEEEeCCCchHHHHHHHHHHC-C--CEEEEEecCCCCCceEEEEEeccCCceEEEEEc-CccCCCCEEEEEeccccchHH
Confidence 355667778888777666653 2 234444432211 1 1111111 234 68999999999999999
Q ss_pred HHHHHHHHHHcCCCCccEEEEEEeeCHH--HHHHHH
Q 023344 211 ANQAIQLLIEKGVPESHIIFLNLISAPE--GIHCVC 244 (283)
Q Consensus 211 ~~~ai~~L~~~G~~e~~I~~v~~vas~~--gl~~l~ 244 (283)
+.++++.|++.|+ +.+.+++++..++ |.+++.
T Consensus 141 ~~~~~~~l~~~Ga--~~v~~~~~~~~~~~~g~~~l~ 174 (187)
T PLN02293 141 LCAAINLLERAGA--EVVECACVIELPELKGREKLN 174 (187)
T ss_pred HHHHHHHHHHCCC--EEEEEEEEEEcCCccHHHHhc
Confidence 9999999999998 5677888887555 999985
No 47
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.24 E-value=7.6e-07 Score=76.95 Aligned_cols=43 Identities=26% Similarity=0.520 Sum_probs=38.6
Q ss_pred CCeEEEEeCCchh-HHHHhhhhccccCCCCHHHHHHHhhhccccCC
Q 023344 1 MNMKIFVDTDADV-RLARRIRRDTVERGRDVDSVLEQYADVIIPRG 45 (283)
Q Consensus 1 ~d~~ifv~~~~d~-~l~rr~~rd~~~rgr~~~~v~~qyaD~iip~~ 45 (283)
+|++|||++|.++ |++||+.||+.+||++.+++++||. .+|.+
T Consensus 118 ~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~--~~~~~ 161 (179)
T cd02028 118 LDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWP--SVPSG 161 (179)
T ss_pred cCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcc--cccCc
Confidence 5899999999998 9999999999999999999999963 45543
No 48
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=98.23 E-value=2.4e-06 Score=74.26 Aligned_cols=57 Identities=16% Similarity=0.291 Sum_probs=46.2
Q ss_pred cCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EeeCHHHHHHHHHh
Q 023344 188 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKR 246 (283)
Q Consensus 188 ~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~--~vas~~gl~~l~~~ 246 (283)
.+-.+++||.+||+|+|+.||+|+++|.+.||++|+ ++|++++ -+.|..+.++|.+.
T Consensus 76 ~vVGDV~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA--~~V~~~aTHgvfs~~A~~~l~~s 134 (184)
T PF14572_consen 76 NVVGDVKGKICIIVDDIIDTGGTLIKAAELLKERGA--KKVYACATHGVFSGDAPERLEES 134 (184)
T ss_dssp EEES--TTSEEEEEEEEESSTHHHHHHHHHHHHTTE--SEEEEEEEEE---TTHHHHHHHS
T ss_pred EEEEEccCCeEeeecccccchHHHHHHHHHHHHcCC--CEEEEEEeCcccCchHHHHHhhc
Confidence 344789999999999999999999999999999999 6888887 56688889999764
No 49
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=98.21 E-value=1.1e-05 Score=70.50 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=63.8
Q ss_pred eeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCC
Q 023344 144 LCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 223 (283)
Q Consensus 144 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~ 223 (283)
-++|++.++|.++...+...+. .+ ++...+... .... ..-+...+|++|+|+|++++||+|+..+++.|+++|+
T Consensus 60 d~Ivgi~~gGi~~A~~la~~L~-~~--~i~~~k~~~-~~~~--~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga 133 (187)
T TIGR01367 60 DFIVGPAMGGVILGYEVARQLS-VR--SIFAEREGG-GMKL--RRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGG 133 (187)
T ss_pred CEEEEEccCcHHHHHHHHHHhC-CC--eEEEEEeCC-cEEE--eecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCC
Confidence 3678999999999998888763 22 344444321 1111 1111123789999999999999999999999999999
Q ss_pred CCccEEEEEEeeCHHHH
Q 023344 224 PESHIIFLNLISAPEGI 240 (283)
Q Consensus 224 ~e~~I~~v~~vas~~gl 240 (283)
+.+.+++++.-.+|-
T Consensus 134 --~vv~~~vlid~~~~~ 148 (187)
T TIGR01367 134 --QVVGLACIIDRSQGG 148 (187)
T ss_pred --eEEEEEEEEECcCCC
Confidence 567777888766554
No 50
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.16 E-value=2.7e-05 Score=76.05 Aligned_cols=106 Identities=13% Similarity=0.175 Sum_probs=69.7
Q ss_pred eEEEecccchHHHHHHHHhcc-----CceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHH
Q 023344 145 CGVSIVRSGESMENALRACCK-----GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLI 219 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p-----~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~ 219 (283)
++|+==-+|..-...+.+.+- ++.... +.+...+..+..-..+..+++|++|+|+|||+.||+|++.|.+.|+
T Consensus 282 VVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~av--l~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~Lk 359 (439)
T PTZ00145 282 VIVSPDAGGVYRARKFQDGLNHRGISDCGIAM--LIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLK 359 (439)
T ss_pred EEEccCcchHHHHHHHHHHhccccccCCCEEE--EEeecCCCCceEEEeccCCCCCCEEEEEcceeCcHHHHHHHHHHHH
Confidence 344333444555666666653 233332 3322222212222445568999999999999999999999999999
Q ss_pred HcCCCCccEEEEE--EeeCHHHHHHHHHhCCCcEEEEE
Q 023344 220 EKGVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 220 ~~G~~e~~I~~v~--~vas~~gl~~l~~~~P~v~I~ta 255 (283)
++|+ ++|.+++ .+.+..+.++|.+. +=-+||+.
T Consensus 360 ~~GA--~~V~~~~THglfs~~A~~rl~~s-~i~~IvvT 394 (439)
T PTZ00145 360 KHGA--RRVFAFATHGLFSGPAIERIEAS-PLEEVVVT 394 (439)
T ss_pred HcCC--CEEEEEEEcccCChhHHHHHhcC-CCCEEEEe
Confidence 9999 6888887 46678999999664 22245554
No 51
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=98.11 E-value=3.9e-05 Score=65.98 Aligned_cols=100 Identities=17% Similarity=0.269 Sum_probs=66.6
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCC-CCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCC
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGD-NGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 223 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~-t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~ 223 (283)
+++++-.+|.++...+...+. .+ ++.+++... .+....+. .+++|++|+|+||+++||+|+..+++.|++.|+
T Consensus 59 ~Vvg~~~gGi~~A~~~a~~l~-~p--~~~~rK~~k~~g~~~~~~---g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga 132 (170)
T PRK13811 59 VVAGVAVGGVPLAVAVSLAAG-KP--YAIIRKEAKDHGKAGLII---GDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGA 132 (170)
T ss_pred EEEecCcCcHHHHHHHHHHHC-CC--EEEEecCCCCCCCcceEE---cccCCCEEEEEEecccccHHHHHHHHHHHHCCC
Confidence 467777889999888887763 33 344544322 22211111 246899999999999999999999999999998
Q ss_pred CCccEEEEEEeeCHHHHHHHHHhCCCcEEE
Q 023344 224 PESHIIFLNLISAPEGIHCVCKRFPSLKIV 253 (283)
Q Consensus 224 ~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ 253 (283)
+=+-+++++--.+|-.+..+.+ ++++.
T Consensus 133 --~v~~~~~~vdr~~g~~~~l~~~-gv~~~ 159 (170)
T PRK13811 133 --VVDDVVTVVDREQGAEELLAEL-GITLT 159 (170)
T ss_pred --eEEEEEEEEECCccHHHHHHhc-CCcEE
Confidence 3355566666665644443443 34443
No 52
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=98.09 E-value=2e-05 Score=68.18 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=62.0
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCC---------------C-ceeEec-c-CCCCCCCcEEEEEcCccc
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN---------------G-KQLIYE-K-LPNDISERHVLLLDPVLA 206 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t---------------~-~~~~y~-~-lP~~i~~~~Vil~Dp~ia 206 (283)
++|++.++|.++...+.+.+. ++. +.+++...+ + ....+. . .+..++|++|+|+||.++
T Consensus 55 ~Iv~v~~gGiplA~~lA~~L~-~p~--~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiit 131 (178)
T PRK07322 55 VLVTPETKGIPLAHALSRRLG-KPY--VVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVS 131 (178)
T ss_pred EEEEeccCCHHHHHHHHHHHC-CCE--EEEEEeCCCCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEecccc
Confidence 578888889999888877764 232 334433221 0 111121 1 122468999999999999
Q ss_pred chHHHHHHHHHHHHcCCCCccEEEEEEeeCHHH
Q 023344 207 TGNSANQAIQLLIEKGVPESHIIFLNLISAPEG 239 (283)
Q Consensus 207 TG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~g 239 (283)
||+|+.++++.|++.|+ +.+.+++++.-.+.
T Consensus 132 TG~Tl~aa~~~L~~~GA--~~V~~~~v~~~~~~ 162 (178)
T PRK07322 132 TGGTLTALERLVERAGG--QVVAKAAIFAEGDA 162 (178)
T ss_pred ccHHHHHHHHHHHHcCC--EEEEEEEEEEcCCC
Confidence 99999999999999998 55777777765544
No 53
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.07 E-value=2.3e-05 Score=66.52 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=61.6
Q ss_pred eeEEEecccchHHHHHHHHhccCceeeeEEEEec--CCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHH
Q 023344 144 LCGVSIVRSGESMENALRACCKGIKIGKILIHRD--GDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIE 220 (283)
Q Consensus 144 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~--~~t~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~ 220 (283)
.++|.|+|+|..+...+.+.+.--.+..+.+.+. +.++ .++.. -+ ..+|++|+|+|++++||+|+..+.+.+.+
T Consensus 33 d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~~~~~~~~~~--~~-~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~ 109 (156)
T PRK09177 33 KGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLK--RA-EGDGEGFLVVDDLVDTGGTARAVREMYPK 109 (156)
T ss_pred CEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCCcCCcEEEec--CC-CcCcCEEEEEeeeeCCHHHHHHHHHHHhh
Confidence 4789999999999988888875222444555333 3233 22222 22 46899999999999999999999998853
Q ss_pred cCCCCccEEEEEEeeCHHH
Q 023344 221 KGVPESHIIFLNLISAPEG 239 (283)
Q Consensus 221 ~G~~e~~I~~v~~vas~~g 239 (283)
+.+++++..+.+
T Consensus 110 -------v~~a~l~~K~~~ 121 (156)
T PRK09177 110 -------AHFATVYAKPAG 121 (156)
T ss_pred -------CCEEEEEECcCC
Confidence 667777777665
No 54
>PLN02348 phosphoribulokinase
Probab=98.05 E-value=3.4e-06 Score=81.31 Aligned_cols=37 Identities=32% Similarity=0.683 Sum_probs=35.7
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY 37 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy 37 (283)
+|++||||++.++|+.||++||+.+||++.+++++++
T Consensus 183 ~D~~IyVd~~~dvrl~RRI~RD~~eRG~S~EeV~~~i 219 (395)
T PLN02348 183 LDFSIYLDISDDVKFAWKIQRDMAERGHSLESIKASI 219 (395)
T ss_pred CcEEEEEECCHHHHHHHHHHhhHhhcCCCHHHHHHHH
Confidence 5899999999999999999999999999999999888
No 55
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=98.02 E-value=6.9e-05 Score=67.91 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=66.1
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCc--ee-Ee----------ccCCC--CCCCcEEEEEcCcccchH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGK--QL-IY----------EKLPN--DISERHVLLLDPVLATGN 209 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~--~~-~y----------~~lP~--~i~~~~Vil~Dp~iaTG~ 209 (283)
+++++...|.++...+...+. ++. +.++++...+. .+ .| ..+|. -.+|++|+|+||+++||+
T Consensus 114 ~Vvtv~~~GI~lA~~lA~~L~-~p~--vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~ 190 (238)
T PRK08558 114 VVLTAATDGIPLAVAIASYFG-ADL--VYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGE 190 (238)
T ss_pred EEEEECcccHHHHHHHHHHHC-cCE--EEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcCEEEEEecccccCH
Confidence 567888899999888877763 332 44444322111 00 11 12332 246899999999999999
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEEeeCHH-HHHHHHHhC
Q 023344 210 SANQAIQLLIEKGVPESHIIFLNLISAPE-GIHCVCKRF 247 (283)
Q Consensus 210 t~~~ai~~L~~~G~~e~~I~~v~~vas~~-gl~~l~~~~ 247 (283)
|+.++++.+++.|+ +-+-+++++...+ |.+++.+.+
T Consensus 191 Tl~~~~~ll~~~ga--~vvgv~vlv~~~~~~~~~l~~~~ 227 (238)
T PRK08558 191 TQRALLDLARQAGA--DVVGVFFLIAVGEVGIDRAREET 227 (238)
T ss_pred HHHHHHHHHHHcCC--EEEEEEEEEecCchHHHHHhHhc
Confidence 99999999999998 3345555565544 488887654
No 56
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=97.99 E-value=9.3e-05 Score=64.05 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=65.1
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCC-C-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcC
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN-G-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 222 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t-~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G 222 (283)
+++++.-+|.++...+...+- .+ .+.+++.... + .+.....+ .+|++|+|+||+++||+|+.++++.|++.|
T Consensus 61 ~ivg~~~ggi~lA~~lA~~l~-~p--~~~~rk~~k~yg~~~~~~g~~---~~g~~VlIVDDvitTG~Tl~~~~~~l~~~G 134 (176)
T PRK13812 61 KLAGVALGAVPLVAVTSVETG-VP--YVIARKQAKEYGTGNRIEGRL---DEGEEVVVLEDIATTGQSAVDAVEALREAG 134 (176)
T ss_pred EEEEeecchHHHHHHHHHHHC-CC--EEEEeccCCcCCCCCeEEecC---CCcCEEEEEEEeeCCCHHHHHHHHHHHHCC
Confidence 577788888999888776652 33 3444443222 2 12222221 278999999999999999999999999999
Q ss_pred CCCccEEEEEEeeCHHHHHHHHHhCCCcEEEE
Q 023344 223 VPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 254 (283)
Q Consensus 223 ~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~t 254 (283)
+ +-+-+++++--.+|-++..+.+ ++.+++
T Consensus 135 a--~vv~~~vlvdr~~~~~~~l~~~-g~~v~s 163 (176)
T PRK13812 135 A--TVNRVLVVVDREEGARENLADH-DVELEA 163 (176)
T ss_pred C--eEEEEEEEEECCcchHHHHHhc-CCcEEE
Confidence 8 3455555566554543333333 455544
No 57
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=97.96 E-value=4.3e-05 Score=72.25 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=50.2
Q ss_pred cCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EeeCHHHHHHHHHh
Q 023344 188 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKR 246 (283)
Q Consensus 188 ~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~--~vas~~gl~~l~~~ 246 (283)
.+..+++|++|+|+||+++||+|+..+.+.|+++|+ ++|.+++ .+.+.++++++.+.
T Consensus 223 ~~~~dv~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga--~~V~~~~THglfs~~a~~~l~~~ 281 (326)
T PLN02297 223 IKEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGA--AKVSAYVTHGVFPNESWERFTHD 281 (326)
T ss_pred ecccccCCCeEEEEecccCcHHHHHHHHHHHHHCCC--cEEEEEEECcccChhHHHHHHhc
Confidence 345678999999999999999999999999999999 6788888 47789999999763
No 58
>PRK06031 phosphoribosyltransferase; Provisional
Probab=97.91 E-value=0.00013 Score=65.92 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=63.5
Q ss_pred eEEEecccchHHHHHHHHhccC---ceeeeEE--EEecCC--------C-C-ceeEec--cCCCCCCCcEEEEEcCcccc
Q 023344 145 CGVSIVRSGESMENALRACCKG---IKIGKIL--IHRDGD--------N-G-KQLIYE--KLPNDISERHVLLLDPVLAT 207 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~---a~~G~i~--i~R~~~--------t-~-~~~~y~--~lP~~i~~~~Vil~Dp~iaT 207 (283)
++|++-+.|.++...+.+.+-. .++++.. .++++- + + ....+. +....++|++|+|+||+++|
T Consensus 87 vIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitT 166 (233)
T PRK06031 87 VVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISS 166 (233)
T ss_pred EEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccc
Confidence 6788888899988887777642 3332211 111110 0 1 111221 12224689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEeeC-HHHHHHHHHhCCC
Q 023344 208 GNSANQAIQLLIEKGVPESHIIFLNLISA-PEGIHCVCKRFPS 249 (283)
Q Consensus 208 G~t~~~ai~~L~~~G~~e~~I~~v~~vas-~~gl~~l~~~~P~ 249 (283)
|+|+.++++.|++.|+ +-+-+++++.- ..+-+++.+.-|+
T Consensus 167 G~Tl~aa~~lL~~~Ga--~Vvgv~v~v~~g~~~~~~l~~~~~~ 207 (233)
T PRK06031 167 GASIVAGLRLLAACGI--EPAGIGAAMLQSERWRESLAAAGPQ 207 (233)
T ss_pred cHHHHHHHHHHHHcCC--eEEEEEEEEEccccHHHHHHhcCCC
Confidence 9999999999999998 23444444443 3445566655554
No 59
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=97.91 E-value=5.8e-05 Score=74.73 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=59.8
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCC-------------C-ceeEeccCCCCCCCcEEEEEcCcccchHH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN-------------G-KQLIYEKLPNDISERHVLLLDPVLATGNS 210 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t-------------~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t 210 (283)
++|++=++|.+...++.+.+. .+.. .++.|+..+ . ........+..++||+|+|+||+++||+|
T Consensus 291 ~Vv~vPdsg~~~A~~~A~~lg-ip~~-~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItTGtT 368 (469)
T PRK05793 291 IVIGVPDSGIPAAIGYAEASG-IPYG-IGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGTT 368 (469)
T ss_pred EEEEcCccHHHHHHHHHHHhC-CCEe-eeEEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccCchHH
Confidence 567777888888888877753 3332 233333211 1 12333555567899999999999999999
Q ss_pred HHHHHHHHHHcCCCCccEEEEE
Q 023344 211 ANQAIQLLIEKGVPESHIIFLN 232 (283)
Q Consensus 211 ~~~ai~~L~~~G~~e~~I~~v~ 232 (283)
+.++++.|++.|+ +.|.+++
T Consensus 369 l~~~~~~Lr~aGA--k~V~~~~ 388 (469)
T PRK05793 369 SKRLVELLRKAGA--KEVHFRV 388 (469)
T ss_pred HHHHHHHHHHcCC--CEEEEEE
Confidence 9999999999999 5566555
No 60
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=97.81 E-value=0.00025 Score=61.90 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=43.9
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCH--HHHHHHHHhCCCcEE
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP--EGIHCVCKRFPSLKI 252 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~--~gl~~l~~~~P~v~I 252 (283)
..+|++|+|+||+++||+|+..+++.|++.|+ +-+-+++++.-. .|-+++.+.+ ++.+
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa--~vv~v~~vvd~~~~~g~~~l~~~~-gv~v 170 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGG--IVSDVICVIEKTQNNGRKKLFTQT-GINV 170 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCC--EEEEEEEEEEecccchHHHHhhcc-CCcE
Confidence 34789999999999999999999999999998 345555555543 4677775433 3443
No 61
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=97.80 E-value=7.4e-05 Score=65.58 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=64.4
Q ss_pred ceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCC----ceeEeccCCCC-CCCcEEEEEcCcccchHHHHHHHHH
Q 023344 143 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG----KQLIYEKLPND-ISERHVLLLDPVLATGNSANQAIQL 217 (283)
Q Consensus 143 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~----~~~~y~~lP~~-i~~~~Vil~Dp~iaTG~t~~~ai~~ 217 (283)
+=++|.|.|+|+-..+-+...+--.++..|.+..-..++ ........|-+ +.|++|+|+|++..||.|+..|.+.
T Consensus 30 PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~ 109 (192)
T COG2236 30 PDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIVDTGETLELALEE 109 (192)
T ss_pred CCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEecccCchHhHHHHHHH
Confidence 347999999999999999999977677777776665543 11222334444 8999999999999999999999999
Q ss_pred HHHcCCCC
Q 023344 218 LIEKGVPE 225 (283)
Q Consensus 218 L~~~G~~e 225 (283)
|++..+.+
T Consensus 110 l~~~~p~e 117 (192)
T COG2236 110 LKKLAPAE 117 (192)
T ss_pred HHhhCchh
Confidence 99955443
No 62
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=97.80 E-value=0.00012 Score=71.99 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=67.4
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecC---CC---C--------ceeEeccCCCCCCCcEEEEEcCcccchHH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDG---DN---G--------KQLIYEKLPNDISERHVLLLDPVLATGNS 210 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~---~t---~--------~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t 210 (283)
++||+=.+|.+...++.+.+.- +.- ..+.|.. .+ . ..+.....+..++||+|+|+||+++||+|
T Consensus 278 ~Vv~vPd~g~~~A~~~A~~lgi-p~~-~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvitTG~T 355 (445)
T PRK08525 278 FVVPVPDSGVPAAIGYAQESGI-PFE-MAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVRGTT 355 (445)
T ss_pred eEEECCchHHHHHHHHHHHhCC-Ccc-ceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEecccCcHHH
Confidence 4555556788888887777642 111 1222222 11 0 11222344445899999999999999999
Q ss_pred HHHHHHHHHHcCCCCccEEEEE--EeeCHHHHHHHHHhCCCc-EEEEEe
Q 023344 211 ANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFPSL-KIVTSE 256 (283)
Q Consensus 211 ~~~ai~~L~~~G~~e~~I~~v~--~vas~~gl~~l~~~~P~v-~I~ta~ 256 (283)
+.++++.|++.|+ ++|.+++ .+.+......+. +|.+ ++++..
T Consensus 356 l~~a~~~Lr~aGA--~~V~v~~~hp~~~~~~~~~i~--~~~~~~li~~~ 400 (445)
T PRK08525 356 SKKIVSLLRAAGA--KEIHLRIACPEIKFPCYYGID--TPTFEELISAN 400 (445)
T ss_pred HHHHHHHHHhcCC--CEEEEEEECCCcCCchhhhCc--CCChhhEEEcC
Confidence 9999999999999 5676665 444555566663 4544 466654
No 63
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=97.74 E-value=4.7e-05 Score=66.35 Aligned_cols=40 Identities=28% Similarity=0.536 Sum_probs=36.7
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 233 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~ 233 (283)
.+++++|+|+||++.||+|+.++.+.|++.|+ ++|.++++
T Consensus 149 ~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga--~~V~~~~l 188 (190)
T TIGR00201 149 SFQGRNIVLVDDVVTTGATLHEIARLLLELGA--ASVQVWTL 188 (190)
T ss_pred CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCC--CEEEEEEE
Confidence 47899999999999999999999999999999 67887776
No 64
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=97.74 E-value=4e-05 Score=68.86 Aligned_cols=149 Identities=23% Similarity=0.225 Sum_probs=80.1
Q ss_pred ceeeecCchHHHHHhHhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCce---eeeeeeccceeEEEec
Q 023344 74 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM---YTGVDFCKKLCGVSIV 150 (283)
Q Consensus 74 ~v~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~---~~g~~~~~~i~~V~Il 150 (283)
...+-...+.++.+++.+.=.+ ... ...-++++|...........+..|..|+... ..|+..... +..-+
T Consensus 68 ~~~~~~Y~~~l~~~i~~~Kf~~--~~~---l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~--la~~l 140 (225)
T COG1040 68 LRSLGSYNGPLRELISQLKFQG--DLD---LAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSEL--LARAL 140 (225)
T ss_pred EEEEEEccHHHHHHHHHhhhCC--chh---HHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHH--HHHHH
Confidence 3444454456888888776221 111 2344555555555523333455677787642 233321111 11111
Q ss_pred --ccchHHHHHHHHhccCceeeeEEEEecCCC--CceeEeccCCCCCCC-cEEEEEcCcccchHHHHHHHHHHHHcCCCC
Q 023344 151 --RSGESMENALRACCKGIKIGKILIHRDGDN--GKQLIYEKLPNDISE-RHVLLLDPVLATGNSANQAIQLLIEKGVPE 225 (283)
Q Consensus 151 --RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t--~~~~~y~~lP~~i~~-~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e 225 (283)
+.|.+. .+++.-.+... .++...++. ...-+..+-+ .+. ++|+|+||++.||+|+..+.+.|++.|+
T Consensus 141 ~~~~~~~~--~~~r~k~~~~q--~~l~~~~rr~nl~~aF~~~~~--~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga-- 212 (225)
T COG1040 141 ARRLGKPI--ALRRVKDTSPQ--QGLKALERRRNLKGAFRLKKG--IEEPKNVLLVDDVYTTGATLKEAAKLLREAGA-- 212 (225)
T ss_pred HHHhCchH--HHHHHhccccc--cccchHHHHHhccCCeecCCC--CCCCCeEEEEecccccHHHHHHHHHHHHHcCC--
Confidence 223333 33333333332 112211111 1222333333 333 8999999999999999999999999998
Q ss_pred ccEEEEEEeeCH
Q 023344 226 SHIIFLNLISAP 237 (283)
Q Consensus 226 ~~I~~v~~vas~ 237 (283)
++|.+.++.-++
T Consensus 213 ~~v~~~~lar~~ 224 (225)
T COG1040 213 KRVFVLTLARAP 224 (225)
T ss_pred ceEEEEEEEecC
Confidence 789888876553
No 65
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.72 E-value=2.5e-05 Score=72.13 Aligned_cols=37 Identities=30% Similarity=0.699 Sum_probs=35.5
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY 37 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy 37 (283)
+|++|||+++.++|+.||++||+.+||++.+++.++|
T Consensus 116 ~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i 152 (273)
T cd02026 116 LDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASI 152 (273)
T ss_pred ccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5899999999999999999999999999999999888
No 66
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=97.71 E-value=0.00064 Score=59.46 Aligned_cols=99 Identities=18% Similarity=0.340 Sum_probs=60.8
Q ss_pred EEEecccchHHHHHHHHhccCceeeeEEEEecCCC-Cc-eeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCC
Q 023344 146 GVSIVRSGESMENALRACCKGIKIGKILIHRDGDN-GK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 223 (283)
Q Consensus 146 ~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t-~~-~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~ 223 (283)
++.+-=+|.|+..++...+ + ++.+.+++.... +. ..+...+ .+|++|+|+||+++||+|+.++++.+++.|+
T Consensus 77 I~g~~~~GiplA~~vA~~l-~--~p~v~vRK~~k~~g~~~~~~g~~---~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga 150 (187)
T PRK13810 77 VAGVELGGVPLATAVSLET-G--LPLLIVRKSVKDYGTGSRFVGDL---KPEDRIVMLEDVTTSGGSVREAIEVVREAGA 150 (187)
T ss_pred EEEEccchHHHHHHHHHHh-C--CCEEEEecCCCccCCCceEEccC---CCcCEEEEEEeccCCChHHHHHHHHHHHCCC
Confidence 4445556777776665543 2 344555544221 21 2222222 2689999999999999999999999999998
Q ss_pred CCccEEEEEEeeCHHH-HHHHHHhCCCcEEEE
Q 023344 224 PESHIIFLNLISAPEG-IHCVCKRFPSLKIVT 254 (283)
Q Consensus 224 ~e~~I~~v~~vas~~g-l~~l~~~~P~v~I~t 254 (283)
+-+-+++++--.+| -+++ +.+ .++++.
T Consensus 151 --~V~~v~vlvdr~~g~~~~l-~~~-gi~~~s 178 (187)
T PRK13810 151 --YIKYVITVVDREEGAEENL-KEA-DVELVP 178 (187)
T ss_pred --EEEEEEEEEECCcChHHHH-HHc-CCcEEE
Confidence 33445555554444 4555 343 344443
No 67
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.00013 Score=62.67 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=65.7
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEe--c----CCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHR--D----GDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLL 218 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R--~----~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L 218 (283)
++|.|--+|.|+.......+- +. +.+|+ - +..+..-.+.+--..++||+++++|+++.||.|+..+|+.|
T Consensus 89 vVvGIa~sGvPlAtmvA~elg-~e---laiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~l 164 (203)
T COG0856 89 VVVGIAISGVPLATMVAYELG-KE---LAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQL 164 (203)
T ss_pred EEEEEeecCccHHHHHHHHhC-Cc---eEEEecccccccccCCcCceeecccccccCceEEEEecccccChhHHHHHHHH
Confidence 456677788888777666543 11 23332 1 11111123333334688999999999999999999999999
Q ss_pred HHcCCCCccEEEEEEeeCHHHHHHHH
Q 023344 219 IEKGVPESHIIFLNLISAPEGIHCVC 244 (283)
Q Consensus 219 ~~~G~~e~~I~~v~~vas~~gl~~l~ 244 (283)
++.|..+ +++++++.+.|+..+.
T Consensus 165 ke~g~kp---v~v~VL~dK~G~dei~ 187 (203)
T COG0856 165 KEEGGKP---VLVVVLADKKGVDEIE 187 (203)
T ss_pred HHcCCCc---EEEEEEEccCCccccc
Confidence 9999843 6788999999998874
No 68
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=97.70 E-value=0.00042 Score=61.49 Aligned_cols=93 Identities=11% Similarity=0.102 Sum_probs=58.5
Q ss_pred EEEecccchHHHHHHHHhccCceeeeEEEEecCCCC--c-eeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcC
Q 023344 146 GVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG--K-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 222 (283)
Q Consensus 146 ~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~--~-~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G 222 (283)
++.+=-+|.++...+...+ +.+ .+ +.|-+.++ . ...... ....+|++|+|+||+++||+|+.++++.|++.|
T Consensus 71 IvG~~~~Gi~~A~~vA~~l-~~p--~~-~~RK~~K~~G~~~~~~~~-g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G 145 (206)
T PRK13809 71 LCGVPYTALTLATSISLKY-NIP--MV-LRRKELKNVDPSDAIKVE-GLFTPGQTCLVINDMVSSGKSIIETAVALEEEG 145 (206)
T ss_pred EEEecCccHHHHHHHHHHh-CCC--EE-EEeCCCCCCCCcCEEEEc-cccCCCCEEEEEEeccccCHHHHHHHHHHHHCC
Confidence 4445556888887776654 233 23 33433332 1 111111 112478999999999999999999999999999
Q ss_pred CCCccEEEEEEeeCH-HHHHHHHH
Q 023344 223 VPESHIIFLNLISAP-EGIHCVCK 245 (283)
Q Consensus 223 ~~e~~I~~v~~vas~-~gl~~l~~ 245 (283)
+ +-+.+++++--. .|.+++.+
T Consensus 146 ~--~vv~v~vlvdr~~~~~~~l~~ 167 (206)
T PRK13809 146 L--VVREALVFLDRQKGACQPLGP 167 (206)
T ss_pred C--EEEEEEEEEECcccHHHHHHh
Confidence 8 344555555533 45666644
No 69
>PLN02440 amidophosphoribosyltransferase
Probab=97.69 E-value=0.00019 Score=71.27 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=58.2
Q ss_pred eEEEecccchHHHHHHHHhcc-CceeeeEEEEecC-CC----------C-ceeEeccCCCCCCCcEEEEEcCcccchHHH
Q 023344 145 CGVSIVRSGESMENALRACCK-GIKIGKILIHRDG-DN----------G-KQLIYEKLPNDISERHVLLLDPVLATGNSA 211 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p-~a~~G~i~i~R~~-~t----------~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~ 211 (283)
++|||..+|..+..++.+.+. ....+.+- .|.. .+ . ....+......++||+|+|+||++.||.|+
T Consensus 278 ~vvpVP~s~~~~A~~la~~lgiP~~~~lvr-~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~gk~VlLVDDiittGtTl 356 (479)
T PLN02440 278 VVIPVPDSGRVAALGYAAKLGVPFQQGLIR-SHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVRGTTS 356 (479)
T ss_pred EEEEeCCcHHHHHHHHHHHhCCCchhheEE-EeeccccccCcchhhhhhhheeeeecccccccCceEEEEeceeCcHHHH
Confidence 578888899888888877753 11122222 1111 11 1 112222222458999999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEEE
Q 023344 212 NQAIQLLIEKGVPESHIIFLNL 233 (283)
Q Consensus 212 ~~ai~~L~~~G~~e~~I~~v~~ 233 (283)
.++++.|++.|+ ++|.+++.
T Consensus 357 ~~i~~~L~~aGa--~~V~v~v~ 376 (479)
T PLN02440 357 SKIVRMLREAGA--KEVHMRIA 376 (479)
T ss_pred HHHHHHHHhcCC--CEEEEEEE
Confidence 999999999998 56766654
No 70
>PRK07429 phosphoribulokinase; Provisional
Probab=97.65 E-value=3.9e-05 Score=72.60 Aligned_cols=37 Identities=30% Similarity=0.675 Sum_probs=35.0
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY 37 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy 37 (283)
+|++|||++|.++|+.||++||+.+||++.+++..++
T Consensus 125 ~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i 161 (327)
T PRK07429 125 YDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEI 161 (327)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 6999999999999999999999999999999998766
No 71
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=97.65 E-value=0.00014 Score=67.34 Aligned_cols=92 Identities=22% Similarity=0.187 Sum_probs=66.8
Q ss_pred ccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EeeCHHHHHHHHHhCCCcEEEEEe--ecCCCC
Q 023344 187 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTSE--IDVALN 262 (283)
Q Consensus 187 ~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~--~vas~~gl~~l~~~~P~v~I~ta~--iD~~ln 262 (283)
.-|-.|++||.++|+|+|+.|++|++.|.+.|+++|+ ++|+.++ .+.+...++++.+..=+-.++|.. +|+..-
T Consensus 206 m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA--~kV~a~~THgVfs~~a~er~~~s~~~~~vvtnt~p~~~~~~ 283 (316)
T KOG1448|consen 206 MVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGA--KKVYAIVTHGVFSGPAIERLNESALDRVVVTNTIPIDDSCL 283 (316)
T ss_pred EEEEeccCCcEEEEecccccccchHHHHHHHHHhcCC--ceEEEEEcceeccccHHHHhhhcccceEEEEEeeccccccc
Confidence 4455789999999999999999999999999999999 5677666 688999999998874443444443 444443
Q ss_pred CCC----eeecCCCchhhhccC
Q 023344 263 EEF----RVIPGLGEFGDRYFG 280 (283)
Q Consensus 263 ~~~----~ivPGlGd~GdR~fg 280 (283)
+.. -+.|=++.+--|..+
T Consensus 284 ~~~~~~Idvs~~~ae~irr~h~ 305 (316)
T KOG1448|consen 284 EPKLTTIDVSPVLAEAIRRTHN 305 (316)
T ss_pred CCcccEEeeccccchheEEecC
Confidence 211 234555556555544
No 72
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.63 E-value=2.4e-05 Score=69.90 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=35.7
Q ss_pred CCeEEEEeCCchhH---HHHhhhhccccCCCCHHHHHHHhhh
Q 023344 1 MNMKIFVDTDADVR---LARRIRRDTVERGRDVDSVLEQYAD 39 (283)
Q Consensus 1 ~d~~ifv~~~~d~~---l~rr~~rd~~~rgr~~~~v~~qyaD 39 (283)
+|+|||||+|.|++ |.||..||++||||+.++|++||+-
T Consensus 129 ~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~~~~~~~~~~g 170 (220)
T cd02025 129 FDFSIYVDADEDDIEKWYIKRFLKLRETAFSDPDSYFHRYAK 170 (220)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHHHHHHhCchhhhhcccC
Confidence 69999999999995 8889999999999999999999843
No 73
>PRK11595 DNA utilization protein GntX; Provisional
Probab=97.62 E-value=0.00011 Score=66.05 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=38.5
Q ss_pred CCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEee
Q 023344 191 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLIS 235 (283)
Q Consensus 191 ~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~va 235 (283)
.+++|++|+|+||++.||+|+..+.+.|++.|+ ++|.++++.-
T Consensus 183 ~~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~--~~V~~~~la~ 225 (227)
T PRK11595 183 LPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGA--ASVQVWCLCR 225 (227)
T ss_pred CCCCCCEEEEEeeeecchHHHHHHHHHHHHcCC--cEEEEEEEEe
Confidence 357899999999999999999999999999998 6788888754
No 74
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=97.60 E-value=0.00042 Score=68.83 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=59.1
Q ss_pred eEEEecccchHHHHHHHHhcc-CceeeeEEEEecC---CC----------C-ceeEeccCCCCCCCcEEEEEcCcccchH
Q 023344 145 CGVSIVRSGESMENALRACCK-GIKIGKILIHRDG---DN----------G-KQLIYEKLPNDISERHVLLLDPVLATGN 209 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p-~a~~G~i~i~R~~---~t----------~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~ 209 (283)
++|||.-+|.++..++.+... ....+.+ |+. .| . .+..+......++||+|+|+|+++.||.
T Consensus 298 ~Vv~VP~sg~~~A~~la~~lgip~~~~li---r~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~tG~ 374 (479)
T PRK09123 298 VVVPVPDSGVPAAIGYAQESGIPFELGII---RNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRGT 374 (479)
T ss_pred EEEEcCccHHHHHHHHHHhcCCCeeheEE---EEeecCccccccccccccccEEEEecccccccCCCEEEEEeceeCchH
Confidence 688999999999999888643 1122222 221 11 1 1222333444588999999999999999
Q ss_pred HHHHHHHHHHHcCCCCccEEEEE
Q 023344 210 SANQAIQLLIEKGVPESHIIFLN 232 (283)
Q Consensus 210 t~~~ai~~L~~~G~~e~~I~~v~ 232 (283)
|+.++++.|++.|+ ++|.+++
T Consensus 375 Tl~~~~~~l~~~Ga--~~v~~~~ 395 (479)
T PRK09123 375 TSRKIVQMLRDAGA--KEVHLRI 395 (479)
T ss_pred HHHHHHHHHHHcCC--CEEEEEE
Confidence 99999999999999 5676655
No 75
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.00028 Score=60.55 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=72.3
Q ss_pred cceeEEEecccchHHHHHHHHhccC--------ceeeeEEEEecC---CCC-ceeEeccCCCCCCCcEEEEEcCcccchH
Q 023344 142 KKLCGVSIVRSGESMENALRACCKG--------IKIGKILIHRDG---DNG-KQLIYEKLPNDISERHVLLLDPVLATGN 209 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~--------a~~G~i~i~R~~---~t~-~~~~y~~lP~~i~~~~Vil~Dp~iaTG~ 209 (283)
+++.++-++.+|--|...+.+-+.+ ..+.+|-+.+.. .|+ .+..-......++||+|+++++++.||.
T Consensus 60 ~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGr 139 (216)
T KOG3367|consen 60 KPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGR 139 (216)
T ss_pred CceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccc
Confidence 4788888999998887766655432 336666665432 244 4555556666899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEEeeCH
Q 023344 210 SANQAIQLLIEKGVPESHIIFLNLISAP 237 (283)
Q Consensus 210 t~~~ai~~L~~~G~~e~~I~~v~~vas~ 237 (283)
|+...++.+++.++ +.+.+++++..+
T Consensus 140 Tl~~Lls~~~~~k~--~~v~vasLL~Kr 165 (216)
T KOG3367|consen 140 TLSTLLSHMKAYKP--SMVKVASLLVKR 165 (216)
T ss_pred hHHHHHHHHHhcCc--cceeeeeecccc
Confidence 99999999999998 789999887754
No 76
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.0006 Score=59.19 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=57.7
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCCC---cee----------EeccCCCCCCCcEEEEEcCcccchHHH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG---KQL----------IYEKLPNDISERHVLLLDPVLATGNSA 211 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~---~~~----------~y~~lP~~i~~~~Vil~Dp~iaTG~t~ 211 (283)
.+|.+-+.|.++...+...+- ++++-+++..... ... .+..-+.--+|.+|+|+||.++||+|+
T Consensus 56 ~Iv~iea~Gi~~a~~vA~~Lg---vp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~ 132 (179)
T COG0503 56 KIVTIEARGIPLAAAVALELG---VPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTA 132 (179)
T ss_pred EEEEEccccchhHHHHHHHhC---CCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHH
Confidence 467777888888877766654 5556565543321 111 111112112589999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEEEeeCH
Q 023344 212 NQAIQLLIEKGVPESHIIFLNLISAP 237 (283)
Q Consensus 212 ~~ai~~L~~~G~~e~~I~~v~~vas~ 237 (283)
.+.++.+.+.|+ .+.-++++...
T Consensus 133 ~a~~~Ll~~~ga---~vvg~~~~ie~ 155 (179)
T COG0503 133 LALIELLEQAGA---EVVGAAFVIEL 155 (179)
T ss_pred HHHHHHHHHCCC---EEEEEEEEEEc
Confidence 999999999998 45555554433
No 77
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=97.54 E-value=0.0015 Score=57.24 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=39.3
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCH--HHHHHHHH
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP--EGIHCVCK 245 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~--~gl~~l~~ 245 (283)
+|++|+|+||.++||+|+.++++.+++.|+ +=+-+++++.-+ .|-+++.+
T Consensus 116 ~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa--~Vvgv~~lvd~~~~~g~~~l~~ 167 (191)
T TIGR01744 116 DQDRVLIIDDFLANGQAAHGLVDIAKQAGA--KIAGIGIVIEKSFQNGRQELVE 167 (191)
T ss_pred CcCEEEEEEehhccChHHHHHHHHHHHCCC--EEEEEEEEEEecCccHHHHHHh
Confidence 689999999999999999999999999998 234444455433 47677754
No 78
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=97.52 E-value=0.00047 Score=67.85 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=56.7
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCC------CC------ceeEeccCCCCCCCcEEEEEcCcccchHHHH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGD------NG------KQLIYEKLPNDISERHVLLLDPVLATGNSAN 212 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~------t~------~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~ 212 (283)
++||+=.+|.+...++.+...- +.- .++.|+.. +. ....+..+...++||+|+|+||++.||+|+.
T Consensus 274 ~Vv~VPdsg~~~A~~~a~~lgi-p~~-~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~VlLVDD~IttGtTl~ 351 (442)
T PRK08341 274 VVIAVPDSGRTAALGFAHESGI-PYM-EGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIVRGTTMK 351 (442)
T ss_pred eEEEecCchHHHHHHHHHHhCC-Cch-heEEEeccccccccCcCchhhhheeeecccccccCCCEEEEEeeeeccHHHHH
Confidence 5677777777888887776531 111 12333321 11 1222344555678999999999999999999
Q ss_pred HHHHHHHHcCCCCccEEEEE
Q 023344 213 QAIQLLIEKGVPESHIIFLN 232 (283)
Q Consensus 213 ~ai~~L~~~G~~e~~I~~v~ 232 (283)
++++.|++.|+ ++|.+..
T Consensus 352 ~~~~~L~~aGA--k~V~~~~ 369 (442)
T PRK08341 352 RIVKMLRDAGA--REVHVRI 369 (442)
T ss_pred HHHHHHHhcCC--cEEEEEE
Confidence 99999999999 4555444
No 79
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.0015 Score=57.84 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=60.0
Q ss_pred ccchHHHHHHHHhc-cCceeeeEEEEecCCCC--c-eeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCc
Q 023344 151 RSGESMENALRACC-KGIKIGKILIHRDGDNG--K-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 226 (283)
Q Consensus 151 RaG~~m~~~l~~~~-p~a~~G~i~i~R~~~t~--~-~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~ 226 (283)
=+|.|+...+...+ .. +. ..+.|.+.++ . ...-...+ +|++|+++||++.||+|+..|++.|++.|. +
T Consensus 70 ~ggiP~A~~~a~~l~~~-~~--~~~~Rke~K~hG~~~~ieG~~~---~G~kVvvVEDViTTG~Si~eai~~l~~~G~--~ 141 (201)
T COG0461 70 LGGIPLAAATALALAHL-PP--MAYVRKEAKDHGTGGLIEGGEV---KGEKVVVVEDVITTGGSILEAVEALREAGA--E 141 (201)
T ss_pred ccchHHHHHHHHHhccC-Cc--EEEEeceeccCCCcceeEecCC---CCCEEEEEEecccCCHhHHHHHHHHHHcCC--e
Confidence 35666666655554 22 22 4455555432 2 11112222 799999999999999999999999999998 3
Q ss_pred cEEEEEEeeCHHHHHHHHHhC
Q 023344 227 HIIFLNLISAPEGIHCVCKRF 247 (283)
Q Consensus 227 ~I~~v~~vas~~gl~~l~~~~ 247 (283)
=.-+++++--.+|.+...+.+
T Consensus 142 V~gv~~ivDR~~~~~~~~~~~ 162 (201)
T COG0461 142 VVGVAVIVDRQSGAKEVLKEY 162 (201)
T ss_pred EEEEEEEEecchhHHHHHHhc
Confidence 456666777778888777754
No 80
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=97.48 E-value=0.00048 Score=68.84 Aligned_cols=86 Identities=13% Similarity=0.205 Sum_probs=56.9
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCC--C--C---------ceeEeccCCCCCCCcEEEEEcCcccchHHH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGD--N--G---------KQLIYEKLPNDISERHVLLLDPVLATGNSA 211 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~--t--~---------~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~ 211 (283)
++|||-.+|..+..++.+.+. .+...-++++... + . .+.-+.-.+..++||+|+|+||++.||+|+
T Consensus 296 ~VvpVP~s~~~~A~~la~~lg-ip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitTGaTl 374 (501)
T PRK09246 296 VVIPIPDTSRDAALEIARILG-VPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTTS 374 (501)
T ss_pred EEEEeCccHHHHHHHHHHHHC-CCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEeccccccHHH
Confidence 466777777888888777653 1111112221111 1 0 011223335568999999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEEE
Q 023344 212 NQAIQLLIEKGVPESHIIFLNL 233 (283)
Q Consensus 212 ~~ai~~L~~~G~~e~~I~~v~~ 233 (283)
.++++.|++.|+ ++|.++++
T Consensus 375 ~~~~~~L~~aGA--~~V~v~v~ 394 (501)
T PRK09246 375 EQIVQMAREAGA--KKVYFASA 394 (501)
T ss_pred HHHHHHHHHcCC--CEEEEEEE
Confidence 999999999999 57777664
No 81
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=97.42 E-value=0.0019 Score=56.63 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=39.0
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCH--HHHHHHHH
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP--EGIHCVCK 245 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~--~gl~~l~~ 245 (283)
+|++|+|+||.++||+|+.++++.+++.|+. =+-+++++.-. .|-+++.+
T Consensus 116 ~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~--vvgv~~lvd~~~~~g~~~l~~ 167 (189)
T PRK09219 116 EGDRVLIIDDFLANGQAALGLIDIIEQAGAK--VAGIGIVIEKSFQDGRKLLEE 167 (189)
T ss_pred CCCEEEEEeehhhcChHHHHHHHHHHHCCCE--EEEEEEEEEccCccHHHHHHh
Confidence 6899999999999999999999999999982 33444445433 47777754
No 82
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=97.28 E-value=0.0035 Score=57.80 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=62.7
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCC--Cc--eeEec----------cCCC-C-CCCcEEEEEcCcccch
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN--GK--QLIYE----------KLPN-D-ISERHVLLLDPVLATG 208 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t--~~--~~~y~----------~lP~-~-i~~~~Vil~Dp~iaTG 208 (283)
+++.+--.|.|+..++...+. +..+.++++... ++ ...|. .++. . .+|++|+|+||.++||
T Consensus 131 ~VvgvetkGIpLA~avA~~L~---vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TG 207 (268)
T TIGR01743 131 AVMTVATKGIPLAYAVASVLN---VPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAG 207 (268)
T ss_pred EEEEEccchHHHHHHHHHHHC---CCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccC
Confidence 466677788888887777653 444666666442 11 11221 1111 1 2589999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHH
Q 023344 209 NSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCV 243 (283)
Q Consensus 209 ~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l 243 (283)
+|+.++++.+++.|+ +=+-+++++...+|-+++
T Consensus 208 gTi~a~i~Ll~e~Ga--~VvGv~vlve~~~~~~~l 240 (268)
T TIGR01743 208 GTINGMINLLDEFDA--EVAGIGVLIDNEGVDEKL 240 (268)
T ss_pred HHHHHHHHHHHHCCC--EEEEEEEEEECCCChHHc
Confidence 999999999999998 234444556666665554
No 83
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=97.19 E-value=0.002 Score=64.30 Aligned_cols=83 Identities=11% Similarity=0.239 Sum_probs=57.2
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCCC-----c---------eeEeccCCCCCCCcEEEEEcCcccchHH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG-----K---------QLIYEKLPNDISERHVLLLDPVLATGNS 210 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~-----~---------~~~y~~lP~~i~~~~Vil~Dp~iaTG~t 210 (283)
++|||-.+|.+...++.+... .+.. .++.|+..++ + ..-+..+...++||+|+|+||++.||+|
T Consensus 315 vVv~VP~sg~~~A~g~A~~lg-ip~~-~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvIttGtT 392 (500)
T PRK07349 315 LVIGVPDSGIPAAIGFSQASG-IPYA-EGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTT 392 (500)
T ss_pred EEEEeccccHHHHHHHHHHHC-CCch-hceEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCCcHH
Confidence 567777888888888877652 2222 2333332221 1 1223344566789999999999999999
Q ss_pred HHHHHHHHHHcCCCCccEEEE
Q 023344 211 ANQAIQLLIEKGVPESHIIFL 231 (283)
Q Consensus 211 ~~~ai~~L~~~G~~e~~I~~v 231 (283)
+.++++.|++.|+. .|.+.
T Consensus 393 l~~~~~~Lr~aGAk--eV~~~ 411 (500)
T PRK07349 393 SRKIVKALRDAGAT--EVHMR 411 (500)
T ss_pred HHHHHHHHHHhCCe--EEEEE
Confidence 99999999999994 45443
No 84
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00053 Score=58.30 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=37.6
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE--eeCHHHHHHH
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL--ISAPEGIHCV 243 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~--vas~~gl~~l 243 (283)
.|.+|+++|+.+|||+|+.+|.+.+.+.|+ +-+-.+|+ +.+-+|=++|
T Consensus 121 ~g~rvvvVDDllATGGTl~AA~~Ll~r~ga--~vvE~~~vieL~~LkGr~kL 170 (183)
T KOG1712|consen 121 PGQRVVVVDDLLATGGTLAAATELLERVGA--EVVECACVIELPELKGREKL 170 (183)
T ss_pred CCCeEEEEechhhcCccHHHHHHHHHHhcc--EEEEEEEEEEccccCCcccc
Confidence 378999999999999999999999999998 34445554 3455565555
No 85
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=97.07 E-value=0.00097 Score=66.32 Aligned_cols=84 Identities=12% Similarity=0.180 Sum_probs=54.9
Q ss_pred EEEecccchHHHHHHHHhccCceeeeEEEEecCCCC--------------ceeEeccCCCCCCCcEEEEEcCcccchHHH
Q 023344 146 GVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG--------------KQLIYEKLPNDISERHVLLLDPVLATGNSA 211 (283)
Q Consensus 146 ~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~--------------~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~ 211 (283)
+|||=-+|.++..++.+.+. .+... ++.|+..++ .+.-+...+..++||+|+|+||++.||+|+
T Consensus 289 VvpVPnqa~~lA~~la~~lg-ip~~~-~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~gk~vllVDDvittG~T~ 366 (484)
T PRK07272 289 VIGVPNSSLSAASGYAEESG-LPYEM-GLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTTS 366 (484)
T ss_pred EEEecHHHHHHHHHHHHHHC-CCccc-CeEEEccCCccccCCCHHHHHHHHhhCccccccccCCCEEEEEccccCchHHH
Confidence 34444778888888777652 11111 111222111 011233345678899999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEEE
Q 023344 212 NQAIQLLIEKGVPESHIIFLNL 233 (283)
Q Consensus 212 ~~ai~~L~~~G~~e~~I~~v~~ 233 (283)
.++++.|++.|+ +.|.+++.
T Consensus 367 ~~~~~~L~~~Ga--~~v~~~~~ 386 (484)
T PRK07272 367 RRIVQLLKEAGA--KEVHVAIA 386 (484)
T ss_pred HHHHHHHHhcCC--cEEEEEEe
Confidence 999999999999 55766665
No 86
>PRK09213 pur operon repressor; Provisional
Probab=97.01 E-value=0.0098 Score=54.99 Aligned_cols=94 Identities=19% Similarity=0.298 Sum_probs=62.4
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEecCCC--Cc--eeEec----------cCCC-CC-CCcEEEEEcCcccch
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN--GK--QLIYE----------KLPN-DI-SERHVLLLDPVLATG 208 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t--~~--~~~y~----------~lP~-~i-~~~~Vil~Dp~iaTG 208 (283)
+++.+--.|.|+...+...+. +.++-++++... ++ ...|. .+|. .+ +|.+|+|+||.++||
T Consensus 133 ~Vvtvet~GIplA~~vA~~L~---vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TG 209 (271)
T PRK09213 133 AVMTVETKGIPLAYAVANYLN---VPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAG 209 (271)
T ss_pred EEEEEccccHHHHHHHHHHHC---CCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccC
Confidence 466777788898888777653 444677775542 22 11221 1111 12 589999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHH
Q 023344 209 NSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCV 243 (283)
Q Consensus 209 ~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l 243 (283)
+|+.++++.+++.|+ +=+-+++++...+|-+++
T Consensus 210 gTi~a~i~Ll~e~Ga--~VvGv~vlVd~~~~~~~l 242 (271)
T PRK09213 210 GTINGMISLLKEFDA--EVVGIGVLVETKEPEERL 242 (271)
T ss_pred HhHHHHHHHHHHCCC--EEEEEEEEEECCCChhhc
Confidence 999999999999998 223444456655664554
No 87
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=97.00 E-value=0.0025 Score=62.73 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=35.1
Q ss_pred CCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 023344 189 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231 (283)
Q Consensus 189 lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v 231 (283)
....++||+|+|+||++.||.|+..+++.|++.|+ +.|.++
T Consensus 332 ~~~~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga--~~v~~~ 372 (442)
T TIGR01134 332 IREVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGA--KEVHVR 372 (442)
T ss_pred ccccCCCCEEEEEeccccccHHHHHHHHHHHHcCC--cEEEEE
Confidence 34457899999999999999999999999999999 455543
No 88
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=96.89 E-value=0.0042 Score=62.23 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=35.9
Q ss_pred ccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEE
Q 023344 187 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIF 230 (283)
Q Consensus 187 ~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~ 230 (283)
..++..++||+|+|+||.++||.|+.++++.|++.|+. +|.+
T Consensus 359 ~~~~~~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~--~v~~ 400 (510)
T PRK07847 359 NPLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAA--EVHV 400 (510)
T ss_pred CccccccCCCEEEEEecccCchHHHHHHHHHHHHcCCC--EEEE
Confidence 34465689999999999999999999999999999994 4544
No 89
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=96.87 E-value=0.0042 Score=61.75 Aligned_cols=44 Identities=14% Similarity=0.355 Sum_probs=36.6
Q ss_pred eccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 023344 186 YEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231 (283)
Q Consensus 186 y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v 231 (283)
|...+..++||+|+|+||++.||+|+.++++.|++.|+. +|.+.
T Consensus 339 f~~~~~~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~--eV~v~ 382 (475)
T PRK07631 339 LSPVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGAT--EVHVR 382 (475)
T ss_pred hhhcccccCCceEEEEeeeeccHHHHHHHHHHHHHcCCC--EEEEE
Confidence 333456688999999999999999999999999999994 45443
No 90
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=96.85 E-value=0.0044 Score=61.51 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=52.2
Q ss_pred eEEEecccchHHHHHHHHhccCceeeeEEEEec--CCCC-----------ceeEeccCCCCCCCcEEEEEcCcccchHHH
Q 023344 145 CGVSIVRSGESMENALRACCKGIKIGKILIHRD--GDNG-----------KQLIYEKLPNDISERHVLLLDPVLATGNSA 211 (283)
Q Consensus 145 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~--~~t~-----------~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~ 211 (283)
+++|+=-+|.+...++.+..- .+...-++++. ..|. .+..|.-.+..++||+|+|+||.+.||+|+
T Consensus 286 ~vv~VP~s~~~~A~~~a~~~g-ip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvittGtTl 364 (471)
T PRK06781 286 VVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTS 364 (471)
T ss_pred EEEEcChhHHHHHHHHHHHhC-CCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCceEEEEeceeccchHH
Confidence 445555577777777766652 22211122211 1111 112344345678899999999999999999
Q ss_pred HHHHHHHHHcCCCC
Q 023344 212 NQAIQLLIEKGVPE 225 (283)
Q Consensus 212 ~~ai~~L~~~G~~e 225 (283)
.++++.|++.|+.+
T Consensus 365 ~~~~~~Lk~aGA~e 378 (471)
T PRK06781 365 KRIVRMLREAGATE 378 (471)
T ss_pred HHHHHHHHHcCCcE
Confidence 99999999999953
No 91
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=96.84 E-value=0.00092 Score=66.33 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=34.0
Q ss_pred ccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCC
Q 023344 187 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPE 225 (283)
Q Consensus 187 ~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e 225 (283)
..+...++|++|+|+||.+.||+|+.++++.|++.|+.+
T Consensus 348 ~~~~~~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~ 386 (474)
T PRK06388 348 NPIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKE 386 (474)
T ss_pred ccccccccCceEEEEeCeECcHHHHHHHHHHHHHcCCCE
Confidence 334456789999999999999999999999999999943
No 92
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=96.79 E-value=0.013 Score=58.27 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=107.4
Q ss_pred cCCCCHHHHHHHhhh-------ccccCC----CCchHHHHHHHHHHhhhhccc----cccc-CCCceeeecCchHHHHHh
Q 023344 25 ERGRDVDSVLEQYAD-------VIIPRG----GDNHVAIDLIVQHIHTKLGQH----DLCK-IYPNVYVIQSTFQIRGMH 88 (283)
Q Consensus 25 ~rgr~~~~v~~qyaD-------~iip~~----~~~~~a~~~i~~~i~~~l~~~----~~~~-~~~~v~vl~~~~~l~~ll 88 (283)
.+|-++++++...+| ++++++ .+...+...+.+.|...+.+. .-|. +.+++..++++| .+.+.
T Consensus 213 AQGg~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 291 (477)
T PRK05500 213 AEKGNLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIRQQIVQESSSCDLWTPDVCLLNQHP-HQDLI 291 (477)
T ss_pred cCCCCHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHHHHhcccCCcccccCccccccccCc-HHHHH
Confidence 578889999966655 233332 222335555666665555432 2233 577888888877 56666
Q ss_pred HhhhcCCCCh-hhhHh--------h--------HHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEecc
Q 023344 89 TLIRDRGISK-HDFVF--------Y--------SDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVR 151 (283)
Q Consensus 89 t~LRd~~T~~-~~Fr~--------~--------~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~IlR 151 (283)
..|-+...=. .+|.- | --++.+.++++..+.++. ..+ + +++.+-=
T Consensus 292 ~~l~~~~al~fG~F~L~SG~~S~~YiD~~~lls~P~~l~~v~~~la~~l~~---------------~~~-D--~I~Gia~ 353 (477)
T PRK05500 292 LQLYDIGCLLFGEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKN---------------LTF-D--RIAGIPY 353 (477)
T ss_pred HHHHHCCCeEeCcEEECCcCcCCEEEEChhhhcCHHHHHHHHHHHHHHhcc---------------CCC-C--EEEEEcc
Confidence 6665543211 12211 1 112223333333332321 001 1 3555566
Q ss_pred cchHHHHHHHHhccCceeeeEEEEecCCC-Cc-eeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEE
Q 023344 152 SGESMENALRACCKGIKIGKILIHRDGDN-GK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 229 (283)
Q Consensus 152 aG~~m~~~l~~~~p~a~~G~i~i~R~~~t-~~-~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~ 229 (283)
+|.|+..++...+ +.+ .+.+++..+. +. ...-..+ .+|++|+|+||+++||+|+.++++.|++.|+ +-+-
T Consensus 354 gGiPlAt~lA~~l-g~p--~v~vRKe~K~~G~~~~ieG~~---~~G~rVlIVDDViTTGgSi~eaie~l~~aG~--~V~~ 425 (477)
T PRK05500 354 GSLPTATGLALHL-HHP--MIFPRKEVKAHGTRRLIEGNF---HPGETVVVVDDILITGKSVMEGAEKLKSAGL--NVRD 425 (477)
T ss_pred chHHHHHHHHHHh-CCC--EEEEecCcCccCCCceEecCC---CCcCEEEEEEeccccCHHHHHHHHHHHHCCC--EEEE
Confidence 7888877766653 222 2445444221 22 2211122 2689999999999999999999999999998 2344
Q ss_pred EEEEeeCHHH-HHHHHH
Q 023344 230 FLNLISAPEG-IHCVCK 245 (283)
Q Consensus 230 ~v~~vas~~g-l~~l~~ 245 (283)
+++++--.+| -+++.+
T Consensus 426 v~vlVDR~~g~~~~L~~ 442 (477)
T PRK05500 426 IVVFIDHEQGVKDKLQS 442 (477)
T ss_pred EEEEEECCcchHHHHHh
Confidence 4455554444 556643
No 93
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.40 E-value=0.0019 Score=60.32 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=35.3
Q ss_pred CCeEEEEeCCchhHHHHhhhh--ccccCC-CCHHHHHHHhhhc
Q 023344 1 MNMKIFVDTDADVRLARRIRR--DTVERG-RDVDSVLEQYADV 40 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~r--d~~~rg-r~~~~v~~qyaD~ 40 (283)
||++||||+|+|.++.|+++| +.++++ ++.+++.+|||.+
T Consensus 197 ~D~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~ 239 (290)
T TIGR00554 197 VDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKL 239 (290)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccC
Confidence 699999999999999998888 556788 9999999999744
No 94
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=96.37 E-value=0.15 Score=44.71 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=46.0
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeC--H---HHHHHHHHhCCCcEEEEE
Q 023344 195 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA--P---EGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 195 ~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas--~---~gl~~l~~~~P~v~I~ta 255 (283)
.+.++|+||-+.||+|++..++.|+++-. .+++++++++-- + +-.+.+.+..+ ++|-+.
T Consensus 121 ~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~~~~~~~~~~~~~~lg-i~i~~v 184 (191)
T PF15609_consen 121 ARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRSEEDRARFEALAEELG-IPIDVV 184 (191)
T ss_pred CCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCCHHHHHHHHHHHHHcC-CcEEEE
Confidence 47999999999999999999999998854 689999998775 2 23456766664 544433
No 95
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.30 E-value=0.01 Score=52.08 Aligned_cols=44 Identities=32% Similarity=0.553 Sum_probs=37.1
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------hhccccCCCCc
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------ADVIIPRGGDN 48 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------aD~iip~~~~~ 48 (283)
+|..+||++|.++|+.|.+.|| |.+.+++..++ ||+||.|+++-
T Consensus 122 ~D~vi~V~a~~e~r~~RL~~R~----g~s~e~a~~ri~~Q~~~~~k~~~aD~vI~N~~~~ 177 (196)
T PRK14732 122 CDATVTVDSDPEESILRTISRD----GMKKEDVLARIASQLPITEKLKRADYIVRNDGNR 177 (196)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHHcCCHHHHHHhCCEEEECCCCH
Confidence 5899999999999999999995 66777776555 99999987653
No 96
>PRK08233 hypothetical protein; Provisional
Probab=96.14 E-value=0.0082 Score=50.69 Aligned_cols=63 Identities=30% Similarity=0.607 Sum_probs=42.5
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCC-CHHHHHHHh------------------hhccccCCCCchHHHHHHHHHHhh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGR-DVDSVLEQY------------------ADVIIPRGGDNHVAIDLIVQHIHT 61 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr-~~~~v~~qy------------------aD~iip~~~~~~~a~~~i~~~i~~ 61 (283)
+|+.||+++|.++++.|++.|+..+..+ ++...+..| ||++|.+. ..++.+.+.|.+
T Consensus 98 ~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~----~~~e~i~~~i~~ 173 (182)
T PRK08233 98 IDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGA----LSVEEIINQIEE 173 (182)
T ss_pred cCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCC----CCHHHHHHHHHH
Confidence 5899999999999999999998654322 232223222 67777642 346677777777
Q ss_pred hhcccc
Q 023344 62 KLGQHD 67 (283)
Q Consensus 62 ~l~~~~ 67 (283)
.|..++
T Consensus 174 ~l~~~~ 179 (182)
T PRK08233 174 ELYRRE 179 (182)
T ss_pred HHHhCC
Confidence 776553
No 97
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.14 E-value=0.014 Score=51.28 Aligned_cols=45 Identities=29% Similarity=0.586 Sum_probs=36.5
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------hhccccCCCCch
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------ADVIIPRGGDNH 49 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------aD~iip~~~~~~ 49 (283)
+|.+|||++|.++|+.|-..| +|.+.+.+...+ ||++|.|++...
T Consensus 126 ~D~vi~V~a~~e~ri~Rl~~R----~g~s~e~~~~ri~~Q~~~~~k~~~ad~vI~N~g~~e 182 (200)
T PRK14734 126 MDLVVVVDVDVEERVRRLVEK----RGLDEDDARRRIAAQIPDDVRLKAADIVVDNNGTRE 182 (200)
T ss_pred CCeEEEEECCHHHHHHHHHHc----CCCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCHH
Confidence 488999999999999887777 478888777555 999999876533
No 98
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.01 E-value=0.016 Score=50.63 Aligned_cols=54 Identities=26% Similarity=0.429 Sum_probs=40.3
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------hhccccCCCCchHHHHHHHHHHhhh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------ADVIIPRGGDNHVAIDLIVQHIHTK 62 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------aD~iip~~~~~~~a~~~i~~~i~~~ 62 (283)
+|..+||++|.++|+.|.+.|| |.+.++..... ||+||.|++. ++.+.+++.+.
T Consensus 126 ~D~ii~V~a~~e~r~~Rl~~R~----g~s~e~~~~ri~~Q~~~~~k~~~aD~vI~N~g~----~e~l~~qv~~~ 191 (195)
T PRK14730 126 CSEIWVVDCSPEQQLQRLIKRD----GLTEEEAEARINAQWPLEEKVKLADVVLDNSGD----LEKLYQQVDQL 191 (195)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHhCCCHHHHHhhCCEEEECCCC----HHHHHHHHHHH
Confidence 5889999999999999999997 66766655443 9999987654 44444444443
No 99
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.015 Score=57.02 Aligned_cols=113 Identities=19% Similarity=0.281 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhccCceeeeEEEEecCC---
Q 023344 103 FYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGD--- 179 (283)
Q Consensus 103 ~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~--- 179 (283)
.+-.++|+.|++|+-.+. +..|..|-........+. --+|.|+.+||. .+--+|.-.|+-..+
T Consensus 267 ~~R~~mG~~La~e~~~ea---DvVipVPDSg~~aAig~A--------~~sGiPy~~Gli---KNrYvgRTFI~P~q~~R~ 332 (470)
T COG0034 267 EARKRMGEKLAEEIPVEA---DVVIPVPDSGRPAAIGYA--------RASGIPYEEGLI---KNRYVGRTFIMPTQELRE 332 (470)
T ss_pred HHHHHHHHHHHHhCCccc---cEEEecCCCChHHHHHHH--------HHhCCchhhccc---cccccceeeeCCcHHHHH
Confidence 345678888888765544 345555543211111111 124666666653 344455444432211
Q ss_pred CCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 023344 180 NGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231 (283)
Q Consensus 180 t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v 231 (283)
.+.+.-.+.+...++||.|+|+||-|-.|.|....++.|++.|+.| |.+.
T Consensus 333 ~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkE--VHvr 382 (470)
T COG0034 333 KGVRLKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKE--VHVR 382 (470)
T ss_pred hhhhhhcCchHHHhCCCeEEEEccccccCccHHHHHHHHHHhCCCE--EEEE
Confidence 1123445677778899999999999999999999999999999954 5443
No 100
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.0052 Score=58.89 Aligned_cols=79 Identities=22% Similarity=0.381 Sum_probs=56.3
Q ss_pred ccchHHHHHHHHhccCceeeeEEEEecCCC---CceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCcc
Q 023344 151 RSGESMENALRACCKGIKIGKILIHRDGDN---GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESH 227 (283)
Q Consensus 151 RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t---~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~ 227 (283)
.+|+|+.++|.+ +--+|.-.|+-+.+- +.+.-+..++..++||+|+|+|+-|--|.|....++.|++.|+.|-.
T Consensus 312 ~sG~py~e~l~r---nrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh 388 (474)
T KOG0572|consen 312 KSGLPYQEVLIR---NRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVH 388 (474)
T ss_pred HhCCchhhhhhh---cccccceecCccHHHHHhhhhhhcccchhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEE
Confidence 367777777643 334454444432211 12334788899999999999999999999999999999999996544
Q ss_pred EEEEE
Q 023344 228 IIFLN 232 (283)
Q Consensus 228 I~~v~ 232 (283)
+.+++
T Consensus 389 ~riAs 393 (474)
T KOG0572|consen 389 IRIAS 393 (474)
T ss_pred EEecC
Confidence 44444
No 101
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=94.45 E-value=0.14 Score=49.76 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=61.5
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------hhccccCCCCchHHHHHHHHHHhhhhc----
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------ADVIIPRGGDNHVAIDLIVQHIHTKLG---- 64 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------aD~iip~~~~~~~a~~~i~~~i~~~l~---- 64 (283)
+|..|||++|.++|+.|=.. +||.+.+....++ ||++|.|+++.......+.+.++..|.
T Consensus 124 ~D~iI~V~ap~e~ri~Rl~~----rRg~s~~~a~~ri~~Q~~~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~~~~~ 199 (395)
T PRK03333 124 FHLVVVVDADVEVRVRRLVE----QRGMAEADARARIAAQASDEQRRAVADVWLDNSGTPDELVEAVRALWADRLLPFAH 199 (395)
T ss_pred CCEEEEEECCHHHHHHHHHh----cCCCCHHHHHHHHHhcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 58899999999999976333 5788887765444 999999887655444444444444332
Q ss_pred cc--ccccCCCceeeecCchHHHHHhHhhhcCCCChhhhHhhHHHHHHHHH
Q 023344 65 QH--DLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVV 113 (283)
Q Consensus 65 ~~--~~~~~~~~v~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~ 113 (283)
+. +-+..+..|.++++.| .| +..|..-..+|...|.
T Consensus 200 ~~~~~~~~~~~~v~v~~ydp---~W----------~~~f~~e~~~l~~~l~ 237 (395)
T PRK03333 200 NLRARRRAARAPPRLVPADP---SW----------PAQAQRIVARLKTAAG 237 (395)
T ss_pred HHhcCCCCCCCCceEeCCCC---Cc----------HHHHHHHHHHHHHhcC
Confidence 11 1122445688988876 34 2447766666665554
No 102
>PRK06696 uridine kinase; Validated
Probab=94.16 E-value=0.049 Score=48.35 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=32.8
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHhhhcc
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYADVI 41 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qyaD~i 41 (283)
+|++|||++|.++++.|++.||..+||+ .+++.++|.+-.
T Consensus 147 ~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~~~~~~~~r~ 186 (223)
T PRK06696 147 WDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEEAEKMYLARY 186 (223)
T ss_pred CCEEEEEECCHHHHHHHHHHhhhhhhCC-chHHHHHHHHHH
Confidence 5899999999999999999999999996 455666664333
No 103
>PRK01184 hypothetical protein; Provisional
Probab=93.53 E-value=0.23 Score=42.33 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=36.3
Q ss_pred eEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh--------------hhccccCCCCchHHHHHH
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY--------------ADVIIPRGGDNHVAIDLI 55 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy--------------aD~iip~~~~~~~a~~~i 55 (283)
..|||++|.++++.|-..|+-.+.+.+.+++.++. ||++|.|++........+
T Consensus 106 ~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~vI~N~~~~~~l~~~v 172 (184)
T PRK01184 106 ILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADYMIVNDSTLEEFRARV 172 (184)
T ss_pred EEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCEEEeCCCCHHHHHHHH
Confidence 68999999999999988876433345555554322 999999876544333333
No 104
>PRK05439 pantothenate kinase; Provisional
Probab=93.44 E-value=0.05 Score=51.31 Aligned_cols=40 Identities=33% Similarity=0.407 Sum_probs=33.2
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccC---CCCHHHHHHHhhhc
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVER---GRDVDSVLEQYADV 40 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~r---gr~~~~v~~qyaD~ 40 (283)
+|++||||+|.+.+..|++.|+.+.| +|+.+++.+||+.+
T Consensus 217 ~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~ 259 (311)
T PRK05439 217 FDFSIYVDADEDLIEKWYIERFLKLRETAFSDPDSYFHRYAKL 259 (311)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccC
Confidence 69999999999999999888888643 57788888888543
No 105
>PLN02422 dephospho-CoA kinase
Probab=93.31 E-value=0.23 Score=44.91 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=34.9
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------hhccccCCCC
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------ADVIIPRGGD 47 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------aD~iip~~~~ 47 (283)
+|..+||++|.++|+.|=..|| |.+.+...... ||+||.|++.
T Consensus 126 ~D~vI~V~a~~e~ri~RL~~R~----g~s~eea~~Ri~~Q~~~eek~~~AD~VI~N~gs 180 (232)
T PLN02422 126 TKPVVVVWVDPETQLERLMARD----GLSEEQARNRINAQMPLDWKRSKADIVIDNSGS 180 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHHcCChhHHHhhCCEEEECCCC
Confidence 5889999999999999988887 66666665333 9999998764
No 106
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=93.18 E-value=0.25 Score=43.53 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=33.2
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------hhccccCCCCch
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------ADVIIPRGGDNH 49 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------aD~iip~~~~~~ 49 (283)
+|..+||++|.++++.|-+.||-. +.+.+.+.. ||++|.|++.-.
T Consensus 134 ~d~ii~V~a~~e~~~~Rl~~R~~~----s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~g~~e 190 (208)
T PRK14731 134 LDFIVVVAADTELRLERAVQRGMG----SREEIRRRIAAQWPQEKLIERADYVIYNNGTLD 190 (208)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCC----CHHHHHHHHHHcCChHHHHHhCCEEEECCCCHH
Confidence 488999999999999999998632 444443222 999998866533
No 107
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=92.81 E-value=0.29 Score=44.55 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=34.2
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------hhccccCC
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------ADVIIPRG 45 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------aD~iip~~ 45 (283)
+|..+||++|.++++.|=..| +|.|.+++.++. ||+||.|+
T Consensus 137 ~D~iv~V~a~~e~ri~RL~~R----~g~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~ 189 (244)
T PTZ00451 137 VSASVVVSCSEERQIERLRKR----NGFSKEEALQRIGSQMPLEEKRRLADYIIEND 189 (244)
T ss_pred CCeEEEEECCHHHHHHHHHHc----CCCCHHHHHHHHHhCCCHHHHHHhCCEEEECC
Confidence 489999999999999997766 467777777655 99999987
No 108
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=91.94 E-value=0.22 Score=44.15 Aligned_cols=42 Identities=26% Similarity=0.480 Sum_probs=33.4
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHH----HHh--------hhccccCCC
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVL----EQY--------ADVIIPRGG 46 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~----~qy--------aD~iip~~~ 46 (283)
+|..++|++|.++|+.|-+.|| |.|.+.+. .|+ ||+||.|++
T Consensus 129 ~D~vi~V~a~~e~ri~Rl~~Rd----~~s~~~a~~ri~~Q~~~eek~~~aD~VI~N~g 182 (204)
T PRK14733 129 LKKVIVIKADLETRIRRLMERD----GKNRQQAVAFINLQISDKEREKIADFVIDNTE 182 (204)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHhCCCHHHHHHhCCEEEECcC
Confidence 4789999999999999998887 44555444 344 999999977
No 109
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.92 E-value=0.19 Score=44.73 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=33.4
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHhh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYA 38 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qya 38 (283)
+|++|||+++.++++.|...|+. ++|++.+++.++|+
T Consensus 161 ~D~vi~v~~~~~~~~~R~~~R~~-~~g~s~~~~~~~~~ 197 (229)
T PRK09270 161 FDFTIFLDAPAEVLRERLVARKL-AGGLSPEAAEAFVL 197 (229)
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-hcCCCHHHHHHHHH
Confidence 48999999999999999999974 79999999998885
No 110
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=91.80 E-value=0.49 Score=41.12 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=37.4
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------hhccccCCCCchHHHHHHHHHHhhhh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------ADVIIPRGGDNHVAIDLIVQHIHTKL 63 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------aD~iip~~~~~~~a~~~i~~~i~~~l 63 (283)
+|..+||++|.++++.|-..|| |.+.+.+.... ||++|.|++. ++.+.+.+.+.+
T Consensus 125 ~D~vi~V~a~~e~~~~Rl~~R~----~~s~e~~~~ri~~Q~~~~~~~~~ad~vI~N~g~----~e~l~~qv~~i~ 191 (194)
T PRK00081 125 VDRVLVVDAPPETQLERLMARD----GLSEEEAEAIIASQMPREEKLARADDVIDNNGD----LEELRKQVERLL 191 (194)
T ss_pred CCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHHhCCHHHHHHhCCEEEECCCC----HHHHHHHHHHHH
Confidence 5889999999999999888775 45554444222 9999988654 334444444443
No 111
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.71 E-value=0.35 Score=38.99 Aligned_cols=37 Identities=27% Similarity=0.573 Sum_probs=31.1
Q ss_pred CCeEEEEeCCchhHHHHhhhhcccc-CCCCHHHHHHHh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVE-RGRDVDSVLEQY 37 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~-rgr~~~~v~~qy 37 (283)
.|++||+++|.+.|..|+..|+... +|.|.+++.+++
T Consensus 83 ~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~ 120 (147)
T cd02020 83 ADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEI 120 (147)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 3789999999999999999999542 377888888776
No 112
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=90.27 E-value=0.7 Score=46.52 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=26.8
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCCC---CHHHHHHHh
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERGR---DVDSVLEQY 37 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rgr---~~~~v~~qy 37 (283)
|+|||++++.++|..||..+.. +||. +.+.+.+.+
T Consensus 422 dlKIfL~As~evRa~RR~~~l~-~Rpll~~~~e~i~~~i 459 (512)
T PRK13477 422 ELKIFLTASVEERARRRALDLQ-AQGFPVIDLEQLEAQI 459 (512)
T ss_pred CEEEEEECCHHHHHHHHHhhhh-hCCCccCCHHHHHHHH
Confidence 7999999999999999987643 5664 456666555
No 113
>PRK04182 cytidylate kinase; Provisional
Probab=89.89 E-value=1.1 Score=37.31 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=18.1
Q ss_pred CeEEEEeCCchhHHHHhhhhc
Q 023344 2 NMKIFVDTDADVRLARRIRRD 22 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd 22 (283)
+++||+++|.++++.|...|+
T Consensus 93 ~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 93 DLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CEEEEEECCHHHHHHHHHhcc
Confidence 689999999999988877765
No 114
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.66 E-value=1 Score=37.36 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=24.5
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHH
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQ 36 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~q 36 (283)
|++|||++|.++|+.|...|+ |.+.+....+
T Consensus 93 d~~v~v~a~~~~r~~R~~~R~----~~s~~~a~~~ 123 (171)
T TIGR02173 93 DVKIWLKAPLEVRARRIAKRE----GKSLTVARSE 123 (171)
T ss_pred CEEEEEECCHHHHHHHHHHcc----CCCHHHHHHH
Confidence 689999999999998887775 5666665544
No 115
>PRK07261 topology modulation protein; Provisional
Probab=88.41 E-value=0.62 Score=39.68 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=30.3
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHH
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLE 35 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~ 35 (283)
.|..||+|.|...|+.|.+.|++.+||++.+.+.+
T Consensus 79 ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~~ 113 (171)
T PRK07261 79 ADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMAE 113 (171)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHHHcCCcCccccC
Confidence 37899999999999999999999999988765543
No 116
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=87.08 E-value=0.86 Score=41.55 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=47.9
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE--eeCHHHHHHHHHhCCCcE-EEEEeecCCC
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL--ISAPEGIHCVCKRFPSLK-IVTSEIDVAL 261 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~--vas~~gl~~l~~~~P~v~-I~ta~iD~~l 261 (283)
|+.|+..|++|+.+..-.+..+|.+.||+.|+ -+|++++- +.|.++=..+. +-|--+ ++|-.+..++
T Consensus 244 dvggriaimvddiiddvqsfvaaae~lkerga--ykiyv~athgllssdapr~le-es~idevvvtntvphev 313 (354)
T KOG1503|consen 244 DVGGRIAIMVDDIIDDVQSFVAAAEVLKERGA--YKIYVMATHGLLSSDAPRLLE-ESPIDEVVVTNTVPHEV 313 (354)
T ss_pred ccCceEEEEehhhHHhHHHHHHHHHHHHhcCc--eEEEEEeecccccccchhhhh-cCCCceEEEecCCcHHH
Confidence 45678999999999999999999999999999 57888772 44555444443 344333 4555554443
No 117
>PRK00023 cmk cytidylate kinase; Provisional
Probab=86.90 E-value=1.9 Score=38.50 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.0
Q ss_pred CeEEEEeCCchhHHHHhhhhc
Q 023344 2 NMKIFVDTDADVRLARRIRRD 22 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd 22 (283)
+++||+++|.+.|..||.++.
T Consensus 141 ~~~ifl~a~~e~R~~Rr~~~~ 161 (225)
T PRK00023 141 ELKIFLTASAEERAERRYKEL 161 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHH
Confidence 689999999999988877664
No 118
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=86.58 E-value=2 Score=37.99 Aligned_cols=54 Identities=28% Similarity=0.466 Sum_probs=36.2
Q ss_pred CCeEEEEeCCchhHHHHhhhhcccc---------CCCCHHHHHHHhhhccccCCCCchHHHHHH
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVE---------RGRDVDSVLEQYADVIIPRGGDNHVAIDLI 55 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~---------rgr~~~~v~~qyaD~iip~~~~~~~a~~~i 55 (283)
+|..|.|++|.++|+.|-+.||-.. +.++.++- -.+||+|+.|+.......+.+
T Consensus 124 ~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~Q~~~~ek-~~~ad~vi~n~~~i~~l~~~i 186 (201)
T COG0237 124 FDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLASQRDLEEK-LALADVVIDNDGSIENLLEQI 186 (201)
T ss_pred CCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcCCHHHH-HhhcCChhhcCCCHHHHHHHH
Confidence 4678999999999999999998111 22333322 222999999877655433333
No 119
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=85.30 E-value=1.8 Score=45.15 Aligned_cols=61 Identities=23% Similarity=0.400 Sum_probs=42.5
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh----------------hh--ccccCCCCc-hHHHHHHHHHHhhh
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY----------------AD--VIIPRGGDN-HVAIDLIVQHIHTK 62 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy----------------aD--~iip~~~~~-~~a~~~i~~~i~~~ 62 (283)
|+|||++++.++|-.||..++.. -+.++++++. || ++|....-+ +..++.+.+.+.+.
T Consensus 156 ~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~~ 232 (712)
T PRK09518 156 EVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVEDA 232 (712)
T ss_pred CeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHhh
Confidence 69999999999999999988754 6667766554 65 666654432 33456666666555
Q ss_pred hcc
Q 023344 63 LGQ 65 (283)
Q Consensus 63 l~~ 65 (283)
+..
T Consensus 233 ~~~ 235 (712)
T PRK09518 233 IEE 235 (712)
T ss_pred hhh
Confidence 543
No 120
>PRK06762 hypothetical protein; Provisional
Probab=85.11 E-value=2.5 Score=35.10 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=39.9
Q ss_pred eEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh--------hhccccCCCCchHHHHHHHHHHhhhhc
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY--------ADVIIPRGGDNHVAIDLIVQHIHTKLG 64 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy--------aD~iip~~~~~~~a~~~i~~~i~~~l~ 64 (283)
..||+++|.++|+.|...|+. .++.+.+.+-.+| ||.+++... ..++.+++.|.+.+.
T Consensus 98 ~~v~Ldap~e~~~~R~~~R~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 98 YTYYFDLSFEETLRRHSTRPK-SHEFGEDDMRRWWNPHDTLGVIGETIFTDN---LSLKDIFDAILTDIG 163 (166)
T ss_pred EEEEEeCCHHHHHHHHhcccc-cccCCHHHHHHHHhhcCCcCCCCeEEecCC---CCHHHHHHHHHHHhc
Confidence 579999999999999999974 3456666666777 565555432 345566666655543
No 121
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=82.90 E-value=3.8 Score=35.41 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=37.0
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------------------hhccccCCCCchHHHHH
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------------ADVIIPRGGDNHVAIDL 54 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------------------aD~iip~~~~~~~a~~~ 54 (283)
|+|||+.++..+|..|=..|+ |-+++.+..+- .|+||..+.-+..++-.
T Consensus 92 dlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~ 164 (179)
T COG1102 92 DLKIWLKAPLEVRAERIAKRE----GIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFL 164 (179)
T ss_pred ceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHH
Confidence 799999999999999888887 66777776433 89999866554444333
No 122
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=81.97 E-value=5 Score=32.70 Aligned_cols=59 Identities=22% Similarity=0.447 Sum_probs=44.6
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEEEeec
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEID 258 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ta~iD 258 (283)
++++++|+++ .+|++...++..|.++|+ ++|++++ =+.+-.+.+.+.|+...+-....+
T Consensus 9 ~l~~~~vlvi----GaGg~ar~v~~~L~~~g~--~~i~i~n--Rt~~ra~~l~~~~~~~~~~~~~~~ 67 (135)
T PF01488_consen 9 DLKGKRVLVI----GAGGAARAVAAALAALGA--KEITIVN--RTPERAEALAEEFGGVNIEAIPLE 67 (135)
T ss_dssp TGTTSEEEEE----SSSHHHHHHHHHHHHTTS--SEEEEEE--SSHHHHHHHHHHHTGCSEEEEEGG
T ss_pred CcCCCEEEEE----CCHHHHHHHHHHHHHcCC--CEEEEEE--CCHHHHHHHHHHcCccccceeeHH
Confidence 6789999864 679999999999999999 6787766 356778888888865444333333
No 123
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=81.31 E-value=3.1 Score=37.02 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=28.9
Q ss_pred CeEEEEeCCchhHHHHhhhhcccc-CCCCHHHHHHHh
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVE-RGRDVDSVLEQY 37 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~-rgr~~~~v~~qy 37 (283)
++|||++++.+.|..||..|+... ...+.+++.+++
T Consensus 139 ~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i 175 (217)
T TIGR00017 139 EVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEI 175 (217)
T ss_pred CEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 689999999999999999998642 245677777766
No 124
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=80.89 E-value=2.3 Score=36.44 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=28.9
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY 37 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy 37 (283)
+|..+||+++.++|+.|.+.|| |.+.+++..++
T Consensus 124 ~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~~~r~ 156 (188)
T TIGR00152 124 CDRVIVVDVSPQLQLERLMQRD----NLTEEEVQKRL 156 (188)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHH
Confidence 4789999999999999999998 78888777666
No 125
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=80.86 E-value=2.4 Score=43.95 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=28.4
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCCC--CHHHHHHHh
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERGR--DVDSVLEQY 37 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rgr--~~~~v~~qy 37 (283)
|+|||++++.++|-.||..... ++|. +.++++++.
T Consensus 575 ~~kifl~a~~~~Ra~Rr~~~~~-~~~~~~~~~~~~~~~ 611 (661)
T PRK11860 575 ALKVFLTASAEARAERRYKQLI-SKGISANIADLLADL 611 (661)
T ss_pred CeEEEEECChhHHHHHHHHHHH-hCCCCCCHHHHHHHH
Confidence 7999999999999999987654 3454 788888666
No 126
>PF15610 PRTase_3: PRTase ComF-like
Probab=79.42 E-value=3.6 Score=38.12 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=34.4
Q ss_pred eEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCC
Q 023344 184 LIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVP 224 (283)
Q Consensus 184 ~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~ 224 (283)
.||..-- .++||.+|++|++--||++..+..+.+++.|+.
T Consensus 128 ~y~ID~~-~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~ 167 (274)
T PF15610_consen 128 TYHIDKE-FLSGKHLIFLDDIKITGSHEDKVRKILKEYGLE 167 (274)
T ss_pred ceEecHH-HhCCcEEEEeccEEecCcHHHHHHHHHHHcCcc
Confidence 3555443 468999999999999999999999999999994
No 127
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=76.58 E-value=6.6 Score=32.91 Aligned_cols=49 Identities=31% Similarity=0.477 Sum_probs=31.8
Q ss_pred eEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh-------------hhccccCCCCchHHHHHHH
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY-------------ADVIIPRGGDNHVAIDLIV 56 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy-------------aD~iip~~~~~~~a~~~i~ 56 (283)
..||+..+.+..+.+|+. +||++.++.+.++ +|.+|+|+ +.+.+...+.
T Consensus 114 ~~i~~~~~~~e~~~~Rl~----~r~~~~~~~i~~rl~~~~~~~~~~~~~d~~i~n~-~~~~~~~~l~ 175 (180)
T TIGR03263 114 VSIFILPPSLEELERRLR----KRGTDSEEVIERRLAKAKKEIAHADEFDYVIVND-DLEKAVEELK 175 (180)
T ss_pred EEEEEECCCHHHHHHHHH----HcCCCCHHHHHHHHHHHHHHHhccccCcEEEECC-CHHHHHHHHH
Confidence 468888888888888875 5666555444333 89999885 4344444333
No 128
>PRK13949 shikimate kinase; Provisional
Probab=74.67 E-value=9.3 Score=32.40 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=16.0
Q ss_pred CeEEEEeCCchhHHHHhhhhc
Q 023344 2 NMKIFVDTDADVRLARRIRRD 22 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd 22 (283)
++.||+++|.++ +.+|+.++
T Consensus 95 ~~vi~L~~~~~~-~~~Ri~~~ 114 (169)
T PRK13949 95 GTTVYLKVSPEV-LFVRLRLA 114 (169)
T ss_pred CeEEEEECCHHH-HHHHHhcC
Confidence 578999999997 66777654
No 129
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=74.53 E-value=11 Score=32.65 Aligned_cols=58 Identities=22% Similarity=0.442 Sum_probs=36.6
Q ss_pred eEEEEeCCchhHHHHhhhhcccc---CCCCH----HHHHHH-------hhhccccCCCCchHHHHHHHHHHhh
Q 023344 3 MKIFVDTDADVRLARRIRRDTVE---RGRDV----DSVLEQ-------YADVIIPRGGDNHVAIDLIVQHIHT 61 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~---rgr~~----~~v~~q-------yaD~iip~~~~~~~a~~~i~~~i~~ 61 (283)
..||+++|.+ -+.+|+.+|-.. ...+. +++.++ .||++++....+...++.|.+.+..
T Consensus 97 ~vv~L~~~~e-~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~~~~~~~v~~~i~~~l~~ 168 (172)
T COG0703 97 IVVYLDAPFE-TLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREVADFIIDTDDRSEEVVEEILEALEG 168 (172)
T ss_pred eEEEEeCCHH-HHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecCCCCcHHHHHHHHHHHHH
Confidence 5799999999 577788866532 33333 333322 1999999877775555555555443
No 130
>PRK13946 shikimate kinase; Provisional
Probab=73.44 E-value=11 Score=32.06 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=37.6
Q ss_pred CeEEEEeCCchhHHHHhhhhcccc--CCCCHHHHHHH-h---------hhccccCCC-CchHHHHHHHHHHhhhhcc
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVE--RGRDVDSVLEQ-Y---------ADVIIPRGG-DNHVAIDLIVQHIHTKLGQ 65 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~--rgr~~~~v~~q-y---------aD~iip~~~-~~~~a~~~i~~~i~~~l~~ 65 (283)
.+.||+++|.++++.|-..|.-.. .+.+..+.+++ | +|+++.... ....+++.|.+.|++++.+
T Consensus 104 ~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~~ 180 (184)
T PRK13946 104 GISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTVASRDVPKEVMADEVIEALAAYLEK 180 (184)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence 468999999998886655443210 12233333332 2 899885433 3335677777777666544
No 131
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=72.27 E-value=8.5 Score=34.38 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=21.0
Q ss_pred chhHHHHhhhhccccCCCCHHHHHHH
Q 023344 11 ADVRLARRIRRDTVERGRDVDSVLEQ 36 (283)
Q Consensus 11 ~d~~l~rr~~rd~~~rgr~~~~v~~q 36 (283)
-...-+..+.||..+||.+-|.|++.
T Consensus 157 vNLEWIQK~~RDt~~RGhSrEAVmDs 182 (289)
T COG3954 157 VNLEWIQKLIRDTSERGHSREAVMDS 182 (289)
T ss_pred eeHHHHHHHHhcccccCccHHHHHHH
Confidence 34556778899999999999988754
No 132
>PRK00131 aroK shikimate kinase; Reviewed
Probab=70.90 E-value=14 Score=30.31 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=33.7
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCC----CCHHHHHH-----------HhhhccccCCCCc-hHHHHHHHHHHhhh
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERG----RDVDSVLE-----------QYADVIIPRGGDN-HVAIDLIVQHIHTK 62 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rg----r~~~~v~~-----------qyaD~iip~~~~~-~~a~~~i~~~i~~~ 62 (283)
.+.||+++|.+.+ .+|+.++.. |+ .+..+.+. +++|++|+.+..+ ...++.|.++|+..
T Consensus 98 ~~~v~l~~~~~~~-~~R~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 98 GTVVYLDASFEEL-LRRLRRDRN-RPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVVNEILEKLEAA 172 (175)
T ss_pred CEEEEEECCHHHH-HHHhcCCCC-CCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeCCCCCHHHHHHHHHHHHHhh
Confidence 3679999999985 555554332 21 12222222 2299999864433 34566666666543
No 133
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=69.34 E-value=12 Score=29.11 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=47.5
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHc---CCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEEE
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEK---GVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~---G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ta 255 (283)
+.++-.++++---.-|..+-.++++.+++. +-|...|++...++...+ +.+.+.+|+|.+|.+
T Consensus 33 ~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~-~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 33 DPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYG-EELKKEFPEVDLVVG 98 (98)
T ss_pred ccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccCh-HHHHhhCCCeEEEeC
Confidence 346778999999999999988888877653 312245666668887777 778899999998864
No 134
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=69.02 E-value=11 Score=32.20 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=24.2
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCC--CCHHHHHHHh
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERG--RDVDSVLEQY 37 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rg--r~~~~v~~qy 37 (283)
++|||++++.++|-.||..--. +.| -++++|+++.
T Consensus 81 ~~KifLtAs~e~RA~RR~~e~~-~~g~~~~~e~v~~~i 117 (157)
T PF02224_consen 81 DLKIFLTASPEVRARRRYKELQ-EKGKKVSYEEVLEDI 117 (157)
T ss_dssp SEEEEEE--HHHHHHHHHHHHH-HTT----HHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHH-hCCCCCCHHHHHHHH
Confidence 7899999999999999976554 344 3677777666
No 135
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=66.99 E-value=62 Score=30.80 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=61.2
Q ss_pred cceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc-hH---HHHHHHHH
Q 023344 142 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-GN---SANQAIQL 217 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaT-G~---t~~~ai~~ 217 (283)
++.++++ .-+...+.+.+.+.+ +.+.|.+-+.|=.. ...|.+++.++.|+.|+|+-.+... .. -+...++.
T Consensus 20 ~~~~i~~-g~~~~~la~~ia~~l-g~~l~~~~~~~FpD---GE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~a 94 (330)
T PRK02812 20 NRLRLFS-GSSNPALAQEVARYL-GMDLGPMIRKRFAD---GELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDA 94 (330)
T ss_pred CCEEEEE-CCCCHHHHHHHHHHh-CCCceeeEEEECCC---CCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHH
Confidence 3455555 566778888888775 56677766654322 2468899999999999999885433 22 24567888
Q ss_pred HHHcCCCCccEEEEEEe
Q 023344 218 LIEKGVPESHIIFLNLI 234 (283)
Q Consensus 218 L~~~G~~e~~I~~v~~v 234 (283)
+++.|+ ++|.++.+.
T Consensus 95 lr~~ga--~ri~~ViPY 109 (330)
T PRK02812 95 CRRASA--RQITAVIPY 109 (330)
T ss_pred HHHhCC--ceEEEEEec
Confidence 999999 789888853
No 136
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=65.94 E-value=19 Score=30.45 Aligned_cols=58 Identities=29% Similarity=0.464 Sum_probs=32.6
Q ss_pred CeEEEEeCCchhHHHHhhhhccccC----CCCHHHHHH-----------HhhhccccCCCCchHHHHHHHHHHhhhhc
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVER----GRDVDSVLE-----------QYADVIIPRGGDNHVAIDLIVQHIHTKLG 64 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~r----gr~~~~v~~-----------qyaD~iip~~~~~~~a~~~i~~~i~~~l~ 64 (283)
+..||+++|.+.++.| +.++- .| +.+.+..+. ++||++|+....+ .+.+++.|.+++.
T Consensus 98 ~~vv~L~~~~e~~~~R-i~~~~-~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad~~idt~~~s---~~ei~~~i~~~l~ 170 (172)
T PRK05057 98 GVVVYLETTIEKQLAR-TQRDK-KRPLLQVDDPREVLEALANERNPLYEEIADVTIRTDDQS---AKVVANQIIHMLE 170 (172)
T ss_pred CEEEEEeCCHHHHHHH-HhCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhhCCEEEECCCCC---HHHHHHHHHHHHh
Confidence 4689999999987776 43331 12 222223332 2299999865433 3444445544443
No 137
>PRK14737 gmk guanylate kinase; Provisional
Probab=65.92 E-value=11 Score=32.64 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=28.5
Q ss_pred eEEEEeCCchhHHHHhh-hhccccCCCCHHHHHHHh------------hhccccCCCCchHHHHHHHHH
Q 023344 3 MKIFVDTDADVRLARRI-RRDTVERGRDVDSVLEQY------------ADVIIPRGGDNHVAIDLIVQH 58 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~-~rd~~~rgr~~~~v~~qy------------aD~iip~~~~~~~a~~~i~~~ 58 (283)
..|||..|+...+.+|+ .|+. .+.+++.... ||.||.|+ +...+...+.+.
T Consensus 118 ~~Ifi~pps~e~l~~RL~~R~~----~s~e~i~~Rl~~~~~e~~~~~~~D~vI~N~-dle~a~~ql~~i 181 (186)
T PRK14737 118 VTIFIEPPSEEEWEERLIHRGT----DSEESIEKRIENGIIELDEANEFDYKIIND-DLEDAIADLEAI 181 (186)
T ss_pred EEEEEECCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhhhccCCEEEECc-CHHHHHHHHHHH
Confidence 57999998755555555 4432 1323222211 99999986 444454444433
No 138
>PRK08356 hypothetical protein; Provisional
Probab=65.45 E-value=19 Score=30.88 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=15.2
Q ss_pred eEEEEeCCchhHHHHhhhhcc
Q 023344 3 MKIFVDTDADVRLARRIRRDT 23 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~ 23 (283)
..|||++|.++++.|-..|+.
T Consensus 117 ~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 117 KVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred EEEEEECCHHHHHHHHHhcCC
Confidence 579999999876665445554
No 139
>PRK13947 shikimate kinase; Provisional
Probab=64.63 E-value=19 Score=29.72 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=30.0
Q ss_pred CeEEEEeCCchhHHHHhhhhccc---cCCCCHHHHHHHh---------hhccccCCCCchHHHHHHHHHHhh
Q 023344 2 NMKIFVDTDADVRLARRIRRDTV---ERGRDVDSVLEQY---------ADVIIPRGGDNHVAIDLIVQHIHT 61 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~---~rgr~~~~v~~qy---------aD~iip~~~~~~~a~~~i~~~i~~ 61 (283)
++.||+++|.+++..|--.|.-. ..+...+.+.+.| ||++|..+.. ..+.+.+.|.+
T Consensus 95 ~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~---~~~~i~~~I~~ 163 (171)
T PRK13947 95 GVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTIDTGDM---TIDEVAEEIIK 163 (171)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCCC---CHHHHHHHHHH
Confidence 35799999988655543222111 1222233443222 8999985432 34445555555
No 140
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=64.47 E-value=84 Score=29.69 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=57.1
Q ss_pred eeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc----hHHHHHHHHHHH
Q 023344 144 LCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT----GNSANQAIQLLI 219 (283)
Q Consensus 144 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaT----G~t~~~ai~~L~ 219 (283)
.++++ ..+...|.+.+.+.+ +.+.|.+-+.+=.. ...|.++++++.|+.|+++-.+-.. =-.+...++.|+
T Consensus 6 ~~i~~-~~~~~~la~~ia~~l-g~~l~~~~~~~Fpd---GE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr 80 (320)
T PRK02269 6 LKLFA-LSSNKELAEKVAQEI-GIELGKSSVRQFSD---GEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALK 80 (320)
T ss_pred eEEEE-CCCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHH
Confidence 34444 456667777777765 56677666654322 2468888899999999998664321 123567788999
Q ss_pred HcCCCCccEEEEEEe
Q 023344 220 EKGVPESHIIFLNLI 234 (283)
Q Consensus 220 ~~G~~e~~I~~v~~v 234 (283)
+.|+ ++|.++.+.
T Consensus 81 ~~~a--~~i~~V~PY 93 (320)
T PRK02269 81 RASA--ESINVVMPY 93 (320)
T ss_pred HhCC--CeEEEEEec
Confidence 9999 789888853
No 141
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=64.03 E-value=74 Score=25.45 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc--hH--HHHHHHHHHHHcCCCCc
Q 023344 151 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT--GN--SANQAIQLLIEKGVPES 226 (283)
Q Consensus 151 RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaT--G~--t~~~ai~~L~~~G~~e~ 226 (283)
.+...|.+.+.+.+ +++.+.+-..+=.. ...|.+++.++.|+.|+++=.+... -. .+...++.+++.|+ +
T Consensus 7 ~~~~~La~~ia~~L-~~~~~~~~~~~F~d---GE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a--~ 80 (116)
T PF13793_consen 7 SSSQDLAERIAEAL-GIPLGKVETKRFPD---GETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGA--K 80 (116)
T ss_dssp SSGHHHHHHHHHHT-TS-EE-EEEEE-TT---S-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTB--S
T ss_pred CCCHHHHHHHHHHh-CCceeeeEEEEcCC---CCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCC--c
Confidence 34556666666665 45666655554322 2468888999999999999888765 22 45567788899998 7
Q ss_pred cEEEEEE
Q 023344 227 HIIFLNL 233 (283)
Q Consensus 227 ~I~~v~~ 233 (283)
+|+++.+
T Consensus 81 ~i~~ViP 87 (116)
T PF13793_consen 81 RITLVIP 87 (116)
T ss_dssp EEEEEES
T ss_pred EEEEecc
Confidence 8888764
No 142
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=63.44 E-value=10 Score=33.94 Aligned_cols=47 Identities=28% Similarity=0.440 Sum_probs=33.2
Q ss_pred eEEEEeCCchhHHHHhhhhccccCCCCHHH-HHHHh--------hhccccCCCCchH
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERGRDVDS-VLEQY--------ADVIIPRGGDNHV 50 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~-v~~qy--------aD~iip~~~~~~~ 50 (283)
-.|-|.+|.++.+.|-+.||- -+-.+.++ +..|+ ||+||.|+++-+.
T Consensus 128 ~tvvV~cd~~~Ql~Rl~~Rd~-lse~dAe~Rl~sQmp~~~k~~~a~~Vi~Nng~~~~ 183 (225)
T KOG3220|consen 128 KTVVVTCDEELQLERLVERDE-LSEEDAENRLQSQMPLEKKCELADVVIDNNGSLED 183 (225)
T ss_pred eEEEEEECcHHHHHHHHHhcc-ccHHHHHHHHHhcCCHHHHHHhhheeecCCCChHH
Confidence 457899999999999999992 22223332 22333 9999999877553
No 143
>PRK08118 topology modulation protein; Reviewed
Probab=62.25 E-value=6.5 Score=33.27 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=26.3
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCCCH
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGRDV 30 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr~~ 30 (283)
.|..||+|+|.++|+.|-+.|-...+|++-
T Consensus 79 ~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~ 108 (167)
T PRK08118 79 ADTIIFLDIPRTICLYRAFKRRVQYRGKTR 108 (167)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHcCCCC
Confidence 488999999999999999999987777654
No 144
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=62.08 E-value=19 Score=26.09 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=33.0
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCC
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 248 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P 248 (283)
+++.|++++ .+|..+..+...|++.|. +++.++ ..|++...+.+|
T Consensus 55 ~~~~iv~~c---~~g~~a~~~~~~l~~~G~--~~v~~l-----~GG~~~w~~~~~ 99 (100)
T smart00450 55 KDKPVVVYC---RSGNRSAKAAWLLRELGF--KNVYLL-----DGGYKEWSAAGP 99 (100)
T ss_pred CCCeEEEEe---CCCcHHHHHHHHHHHcCC--CceEEe-----cCCHHHHHhcCC
Confidence 467888887 678888999999999998 454432 456666666554
No 145
>PRK00698 tmk thymidylate kinase; Validated
Probab=62.05 E-value=19 Score=30.51 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=17.5
Q ss_pred CeEEEEeCCchhHHHHhhhhc
Q 023344 2 NMKIFVDTDADVRLARRIRRD 22 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd 22 (283)
|+.||+++|.++++.|-..|.
T Consensus 129 d~~i~l~~~~~~~~~Rl~~R~ 149 (205)
T PRK00698 129 DLTLYLDVPPEVGLARIRARG 149 (205)
T ss_pred CEEEEEeCCHHHHHHHHHhcC
Confidence 788999999998877766664
No 146
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=61.85 E-value=78 Score=29.28 Aligned_cols=77 Identities=12% Similarity=0.213 Sum_probs=54.2
Q ss_pred ccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH---HHHHHHHHHHHcCCCCcc
Q 023344 151 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN---SANQAIQLLIEKGVPESH 227 (283)
Q Consensus 151 RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~---t~~~ai~~L~~~G~~e~~ 227 (283)
.+...|.+.+.+.+ +.+.|.+-..+=... +.|.+++.++.|+.|+++-..-.-.. -+...++.|++.|+ ++
T Consensus 6 ~~~~~la~~ia~~l-~~~~~~~~~~~FpdG---E~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga--~~ 79 (285)
T PRK00934 6 SASQLLASEVARLL-NTELALVETKRFPDG---ELYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGA--KS 79 (285)
T ss_pred CCCHHHHHHHHHHH-CCceEeeEEEECCCC---CEEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC--Ce
Confidence 45667777777754 777887777654332 46788888999999988876432122 35567788999999 78
Q ss_pred EEEEEE
Q 023344 228 IIFLNL 233 (283)
Q Consensus 228 I~~v~~ 233 (283)
|.++.+
T Consensus 80 i~~v~P 85 (285)
T PRK00934 80 ITLVIP 85 (285)
T ss_pred EEEEec
Confidence 988874
No 147
>PRK00300 gmk guanylate kinase; Provisional
Probab=61.18 E-value=23 Score=30.33 Aligned_cols=53 Identities=26% Similarity=0.475 Sum_probs=32.8
Q ss_pred eEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh-------------hhccccCCCCchHHHHHHHHHHhhhhc
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY-------------ADVIIPRGGDNHVAIDLIVQHIHTKLG 64 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy-------------aD~iip~~~~~~~a~~~i~~~i~~~l~ 64 (283)
+.||+.++++..+.+|+. +||++-++.++++ +|.+|.|+ + ++...+.+...+.
T Consensus 118 ~~I~i~~~s~~~l~~Rl~----~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vi~n~-~----~e~~~~~l~~il~ 183 (205)
T PRK00300 118 VSIFILPPSLEELERRLR----GRGTDSEEVIARRLAKAREEIAHASEYDYVIVND-D----LDTALEELKAIIR 183 (205)
T ss_pred EEEEEECcCHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHhHHhCCEEEECC-C----HHHHHHHHHHHHH
Confidence 568888887878888866 4665544454443 88888754 2 3444444544444
No 148
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=59.08 E-value=26 Score=31.58 Aligned_cols=35 Identities=23% Similarity=0.484 Sum_probs=26.7
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCCCC--HHHHHHHh
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERGRD--VDSVLEQY 37 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rgr~--~~~v~~qy 37 (283)
++|||+++..++|=.||...-. ++|-+ +++++.+.
T Consensus 139 ~lKiFLtAS~e~RA~RR~~q~~-~~g~~~~~e~ll~eI 175 (222)
T COG0283 139 ELKIFLTASPEERAERRYKQLQ-AKGFSEVFEELLAEI 175 (222)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-hccCcchHHHHHHHH
Confidence 6899999999999999987665 35533 56666555
No 149
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=58.26 E-value=27 Score=35.92 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEE-----eeCHHHHHHHHHhCCCcEEEEEeecCCCC
Q 023344 209 NSANQAIQLLIEKGVPESHIIFLNL-----ISAPEGIHCVCKRFPSLKIVTSEIDVALN 262 (283)
Q Consensus 209 ~t~~~ai~~L~~~G~~e~~I~~v~~-----vas~~gl~~l~~~~P~v~I~ta~iD~~ln 262 (283)
.++.+..+.+++.+.. ..+-+. +.+++|.+.|.++||+++++++.-..+-.
T Consensus 377 ~sl~~l~~f~~~l~p~---~~~~~YVPPSNils~eG~e~L~~~~P~ik~IaS~Y~~~~~ 432 (585)
T PF09960_consen 377 ESLKELKRFVKSLFPN---YEPSSYVPPSNILSEEGREALKKAFPEIKTIASLYFGDDE 432 (585)
T ss_pred HHHHHHHHHHHHhCCC---cceEEecCCccccCHHHHHHHHHhCCCeEEEEEeeecCCc
Confidence 3444444444555542 223332 56899999999999999998887655544
No 150
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=57.51 E-value=12 Score=31.64 Aligned_cols=53 Identities=30% Similarity=0.503 Sum_probs=33.5
Q ss_pred eEEEEeCCchhHHHHhhhhccccCCCC-HHHHHHH----------h--hhccccCCCCchHHHHHHHHHHh
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERGRD-VDSVLEQ----------Y--ADVIIPRGGDNHVAIDLIVQHIH 60 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rgr~-~~~v~~q----------y--aD~iip~~~~~~~a~~~i~~~i~ 60 (283)
+.|||..++...|.+|+.+ ||.+ .+.+..+ | .|.+|.|+ +-+.++..|.+.|.
T Consensus 116 ~~IfI~~~s~~~l~~~l~~----r~~~~~~~i~~r~~~~~~~~~~~~~fd~vi~n~-~le~~~~~l~~ii~ 181 (183)
T PF00625_consen 116 IVIFIKPPSPEVLKRRLRR----RGDESEEEIEERLERAEKEFEHYNEFDYVIVND-DLEEAVKELKEIIE 181 (183)
T ss_dssp EEEEEEESSHHHHHHHHHT----TTHCHHHHHHHHHHHHHHHHGGGGGSSEEEECS-SHHHHHHHHHHHHH
T ss_pred eEEEEEccchHHHHHHHhc----cccccHHHHHHHHHHHHHHHhHhhcCCEEEECc-CHHHHHHHHHHHHH
Confidence 4699999999999999754 3433 2233322 2 69999875 44445555555443
No 151
>PRK06217 hypothetical protein; Validated
Probab=57.15 E-value=14 Score=31.36 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCeEEEEeCCchhHHHHhhhhccccCCC
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTVERGR 28 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~~rgr 28 (283)
.|..||+|++.++++.|...|+....|+
T Consensus 84 ~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~ 111 (183)
T PRK06217 84 FDLVVFLTIPPELRLERLRLREFQRYGN 111 (183)
T ss_pred CCEEEEEECCHHHHHHHHHcCcccccCc
Confidence 4789999999999999999998764444
No 152
>PRK13973 thymidylate kinase; Provisional
Probab=56.92 E-value=33 Score=29.96 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.6
Q ss_pred CCeEEEEeCCchhHHHHhhhhc
Q 023344 1 MNMKIFVDTDADVRLARRIRRD 22 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd 22 (283)
.|+.+|+|+|.++.+.|-..|.
T Consensus 129 PD~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 129 PDLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred CCEEEEEeCCHHHHHHHHHhcc
Confidence 3789999999999998866664
No 153
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=56.01 E-value=8.5 Score=32.94 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=16.9
Q ss_pred cEEEEEcCcccchHHHHHHHHH
Q 023344 196 RHVLLLDPVLATGNSANQAIQL 217 (283)
Q Consensus 196 ~~Vil~Dp~iaTG~t~~~ai~~ 217 (283)
..=+++||...||.|+.+|.+.
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l 212 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEEL 212 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHT
T ss_pred cceeeehhhhccChHHHHHHHc
Confidence 3446899999999999998873
No 154
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=55.87 E-value=26 Score=31.41 Aligned_cols=25 Identities=36% Similarity=0.756 Sum_probs=19.4
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCCCCHH
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERGRDVD 31 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~ 31 (283)
|+-||+|+|.|+ |.+|| ..|||+.|
T Consensus 128 dllIyLd~~~e~-~l~RI----~~RgR~~E 152 (216)
T COG1428 128 DLLIYLDASLET-LLRRI----AKRGRPFE 152 (216)
T ss_pred CEEEEEeCCHHH-HHHHH----HHhCCCcc
Confidence 789999999995 44454 45888888
No 155
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=55.78 E-value=31 Score=29.25 Aligned_cols=52 Identities=25% Similarity=0.473 Sum_probs=32.0
Q ss_pred eEEEEeCCchhHHHHhhhhccccCCCCH-HHHHH----------Hh--hhccccCCCCchHHHHHHHHHH
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERGRDV-DSVLE----------QY--ADVIIPRGGDNHVAIDLIVQHI 59 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rgr~~-~~v~~----------qy--aD~iip~~~~~~~a~~~i~~~i 59 (283)
..|||..++...|.+|+.. ||.+- +.+.+ +| .|.+|.|+ +-+.+...+.+.|
T Consensus 116 ~vIfi~~~s~~~l~~rl~~----R~~~~~~~i~~rl~~a~~~~~~~~~fd~~I~n~-~l~~~~~~l~~~i 180 (184)
T smart00072 116 IVIFIAPPSSEELERRLRG----RGTETAERIQKRLAAAQKEAQEYHLFDYVIVND-DLEDAYEELKEIL 180 (184)
T ss_pred EEEEEeCcCHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHhhhccCCEEEECc-CHHHHHHHHHHHH
Confidence 5799999998889888873 44432 22222 22 78888875 3334555544444
No 156
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=55.21 E-value=37 Score=28.80 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=29.3
Q ss_pred EEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh--------hh-ccccCCCCchHHHHHHHHHHhhhhc
Q 023344 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY--------AD-VIIPRGGDNHVAIDLIVQHIHTKLG 64 (283)
Q Consensus 4 ~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy--------aD-~iip~~~~~~~a~~~i~~~i~~~l~ 64 (283)
.||+++|.++...|=..|+ +.+.+.+..++ || ++|.++.. ++.+.+.|.+.|.
T Consensus 114 vi~l~~s~e~l~~RL~~R~----~~~~~~i~~rl~r~~~~~~ad~~vi~~~~s----~ee~~~~i~~~l~ 175 (186)
T PRK10078 114 PVCLQVSPEILRQRLENRG----RENASEINARLARAARYQPQDCHTLNNDGS----LRQSVDTLLTLLH 175 (186)
T ss_pred EEEEeCCHHHHHHHHHHhC----CCCHHHHHHHHHHhhhhccCCEEEEeCCCC----HHHHHHHHHHHHh
Confidence 5789998886544433442 22445554432 77 66665433 4455566665554
No 157
>PRK04040 adenylate kinase; Provisional
Probab=54.70 E-value=29 Score=29.98 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=16.1
Q ss_pred CeEEEEeCCchhHHHHhhhh
Q 023344 2 NMKIFVDTDADVRLARRIRR 21 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~r 21 (283)
|..||++++.+.-+.||+..
T Consensus 112 d~ii~l~a~p~~i~~Rrl~d 131 (188)
T PRK04040 112 DVIVLIEADPDEILMRRLRD 131 (188)
T ss_pred CEEEEEeCCHHHHHHHHhcc
Confidence 67899999999777777654
No 158
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=54.48 E-value=36 Score=32.29 Aligned_cols=125 Identities=13% Similarity=0.181 Sum_probs=66.8
Q ss_pred HHHHHhCCCCCeeEEEeCCCCceeeeee-ec-cceeEEEecccchHHH--------HHHHHhccCceeeeEEEEecCCCC
Q 023344 112 VVEHGLGHLPFTEKQVVTPTGSMYTGVD-FC-KKLCGVSIVRSGESME--------NALRACCKGIKIGKILIHRDGDNG 181 (283)
Q Consensus 112 L~~eal~~lp~~~~~v~TP~g~~~~g~~-~~-~~i~~V~IlRaG~~m~--------~~l~~~~p~a~~G~i~i~R~~~t~ 181 (283)
|+.+|.+. + .+..|.-...-+.+..+ ++ ++-+++|=++||-+|. ..+++-+|++.+
T Consensus 61 LAr~A~~~-~-Ad~IVf~GV~FMaETAkiLnPeK~VL~Pd~~AgCsmA~~~~~~~~~~~~~~~P~~~v------------ 126 (324)
T COG0379 61 LAREAAKT-D-ADTIVFAGVHFMAETAKILNPEKTVLLPDLEAGCSMADMITAEEVRAFKEKHPDAPV------------ 126 (324)
T ss_pred HHHHHhhC-C-CCEEEEeceeehHhhHhhcCCCCeEecCCCCCCCCcccCCCHHHHHHHHHHCCCCce------------
Confidence 44555443 2 34444444433322222 22 4558999999999987 446778887765
Q ss_pred ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHH-------------------HHcCCCCccEEEEEEe------eC
Q 023344 182 KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLL-------------------IEKGVPESHIIFLNLI------SA 236 (283)
Q Consensus 182 ~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L-------------------~~~G~~e~~I~~v~~v------as 236 (283)
+.|.+--..++-.. +.+-|-+.+.+.++.+ ++-|. ++|++---. .+
T Consensus 127 --V~YvNtsA~vKA~~-----Di~cTSsNAvkvVe~~~~~~~Iif~PD~~Lg~yva~~tg~--k~ii~w~G~C~VH~~ft 197 (324)
T COG0379 127 --VTYVNTSAEVKAEA-----DICCTSSNAVKVVESALDGDKILFLPDKNLGRYVAKQTGA--KKIILWPGHCIVHEEFT 197 (324)
T ss_pred --EEEeeChHHHHhhc-----CeEEecchHHHHHHhccCCCcEEEcCcHHHHHHHHHHcCC--CcEEEECCccchhhhcC
Confidence 12222222222211 2333333333333331 12233 355544322 36
Q ss_pred HHHHHHHHHhCCCcEEEEEeecCCCC
Q 023344 237 PEGIHCVCKRFPSLKIVTSEIDVALN 262 (283)
Q Consensus 237 ~~gl~~l~~~~P~v~I~ta~iD~~ln 262 (283)
.+-|+++.+.||+.+|.+ .|+..
T Consensus 198 ~~~i~~~k~~~Pda~vlv---HPEC~ 220 (324)
T COG0379 198 AEDIEELKEKYPDAEVLV---HPECP 220 (324)
T ss_pred HHHHHHHHHHCCCCEEEE---CCCCC
Confidence 888999999999999876 56543
No 159
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=54.18 E-value=29 Score=30.79 Aligned_cols=36 Identities=25% Similarity=0.506 Sum_probs=27.2
Q ss_pred CeEEEEeCCchhHHHHhhhhccc----cCCC--CHHHHHHHh
Q 023344 2 NMKIFVDTDADVRLARRIRRDTV----ERGR--DVDSVLEQY 37 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~----~rgr--~~~~v~~qy 37 (283)
|+.+|+|.|.++.+.|--.|... |.-. ..+.|.+.|
T Consensus 129 D~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~f~~kvr~~Y 170 (208)
T COG0125 129 DLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGY 170 (208)
T ss_pred CEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHH
Confidence 88999999999999999888543 3333 255667777
No 160
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=53.97 E-value=74 Score=29.12 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=46.9
Q ss_pred CceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHH
Q 023344 166 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 245 (283)
Q Consensus 166 ~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~ 245 (283)
+.++|.+++...+. .....| ...+-+.||. .++.+.++.|++.|+ .++++-.-...+.-..+++
T Consensus 139 G~kIgviG~~~~~~-----~~~~~~----~~~~~~~d~~----~~~~~~v~~lr~~~~---D~II~l~H~G~~~d~~la~ 202 (281)
T cd07409 139 GEKIGIIGYTTPDT-----TELSSP----GGKVKFLDEI----EAAQKEADKLKAQGV---NKIIALSHSGYEVDKEIAR 202 (281)
T ss_pred CEEEEEEEEecCcc-----cccccC----CCceEECCHH----HHHHHHHHHHHhcCC---CEEEEEeccCchhHHHHHH
Confidence 56888888864321 111112 1345556664 567788999999887 3444444444444567889
Q ss_pred hCCCcEEEEEe
Q 023344 246 RFPSLKIVTSE 256 (283)
Q Consensus 246 ~~P~v~I~ta~ 256 (283)
.+|.+.++.+.
T Consensus 203 ~~~giD~Iigg 213 (281)
T cd07409 203 KVPGVDVIVGG 213 (281)
T ss_pred cCCCCcEEEeC
Confidence 99999877765
No 161
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=53.90 E-value=1.1e+02 Score=28.50 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=51.5
Q ss_pred ccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEE-cCcccc----hHHHHHHHHHHHHcCCCC
Q 023344 151 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLL-DPVLAT----GNSANQAIQLLIEKGVPE 225 (283)
Q Consensus 151 RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~-Dp~iaT----G~t~~~ai~~L~~~G~~e 225 (283)
-+...+.+.+.+.+ +.+.|.+-..+=.. ...|.++++++.|+.|+++ -.+... =--+...++.+++.|+
T Consensus 7 ~~~~~la~~ia~~l-g~~~~~~~~~~Fpd---GE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga-- 80 (308)
T TIGR01251 7 SSNQELAQKVAKNL-GLPLGDVEVKRFPD---GELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASA-- 80 (308)
T ss_pred CCCHHHHHHHHHHh-CCeeeeeEEEECCC---CCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCC--
Confidence 34456666666654 46666655543222 2468888899999999998 554321 1245667888999999
Q ss_pred ccEEEEEEe
Q 023344 226 SHIIFLNLI 234 (283)
Q Consensus 226 ~~I~~v~~v 234 (283)
++|.++.+.
T Consensus 81 ~~i~~v~PY 89 (308)
T TIGR01251 81 KSITAVIPY 89 (308)
T ss_pred CeEEEEEEe
Confidence 789888753
No 162
>PF11181 YflT: Heat induced stress protein YflT
Probab=53.36 E-value=21 Score=27.73 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=32.9
Q ss_pred ccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhC
Q 023344 205 LATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF 247 (283)
Q Consensus 205 iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~ 247 (283)
..|...+..+|+.|+..|..+++|++++= ..+-++.|...-
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy~~ddI~Vva~--d~~~~~~l~~~t 46 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGYSEDDIYVVAK--DKDRTERLADQT 46 (103)
T ss_pred ECCHHHHHHHHHHHHHcCCCcccEEEEEc--CchHHHHHHHhc
Confidence 35788899999999999999999976662 566778887654
No 163
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=51.39 E-value=1.1e+02 Score=30.41 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=60.4
Q ss_pred ceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc-h---HHHHHHHHHH
Q 023344 143 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-G---NSANQAIQLL 218 (283)
Q Consensus 143 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaT-G---~t~~~ai~~L 218 (283)
+.++++ .-+...|.+.+.+.+ ++++|.+.+.|=.. .+.|.+++.++.|+.|+|+-++-.. - --+...++.+
T Consensus 119 ~m~I~s-gs~~~~LA~~IA~~L-g~~l~~~~~~rFpD---GE~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAl 193 (439)
T PTZ00145 119 NAILFS-GSSNPLLSKNIADHL-GTILGRVHLKRFAD---GEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTC 193 (439)
T ss_pred CeEEEE-CCCCHHHHHHHHHHh-CCCceeeEEEECCC---CCEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHH
Confidence 455543 466778888888866 67788777765432 2468888899999999998864322 1 1355677889
Q ss_pred HHcCCCCccEEEEEEe
Q 023344 219 IEKGVPESHIIFLNLI 234 (283)
Q Consensus 219 ~~~G~~e~~I~~v~~v 234 (283)
++.|+ ++|.+|.+.
T Consensus 194 r~agA--krItlViPY 207 (439)
T PTZ00145 194 RRASA--KKITAVIPY 207 (439)
T ss_pred HHhcc--CeEEEEeec
Confidence 99999 789888853
No 164
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=50.80 E-value=46 Score=27.72 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=13.3
Q ss_pred eEEEEeCCchhHHHHhhhh
Q 023344 3 MKIFVDTDADVRLARRIRR 21 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~r 21 (283)
..||+++|.+++..|=..|
T Consensus 113 ~~i~l~~~~~~~~~Rl~~R 131 (179)
T TIGR02322 113 LVVNITASPDVLAQRLAAR 131 (179)
T ss_pred EEEEEECCHHHHHHHHHHc
Confidence 5789999988666554443
No 165
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=50.40 E-value=1.1e+02 Score=30.41 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=49.9
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE---EeeCHHHHHHHHHhCC----CcEEEEEeecC
Q 023344 195 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN---LISAPEGIHCVCKRFP----SLKIVTSEIDV 259 (283)
Q Consensus 195 ~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~---~vas~~gl~~l~~~~P----~v~I~ta~iD~ 259 (283)
+-..++=+.++.||..+.+|...|.+-.- ..+.+++ ++.+++.|+.+.+.++ .+.|.|+.++.
T Consensus 68 ~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~--g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~d 137 (460)
T COG1207 68 DVEFVLQEEQLGTGHAVLQALPALADDYD--GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDD 137 (460)
T ss_pred CceEEEecccCChHHHHHhhhhhhhcCCC--CcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCC
Confidence 34577888899999999999999954221 2477776 7999999999999986 47888888765
No 166
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=49.57 E-value=16 Score=32.13 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.3
Q ss_pred CeEEEEeCCchhHHHHhhhhccccC
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVER 26 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~r 26 (283)
++.+|+|++.|+++-|-+.|+..++
T Consensus 114 ~fvl~fdc~ee~~l~Rll~R~q~~~ 138 (195)
T KOG3079|consen 114 DFVLFFDCPEETMLKRLLHRGQSNS 138 (195)
T ss_pred CEEEEEeCCHHHHHHHHHhhcccCC
Confidence 6899999999999999999997643
No 167
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=49.56 E-value=43 Score=31.21 Aligned_cols=59 Identities=12% Similarity=0.239 Sum_probs=34.1
Q ss_pred eEEEEeCCchhHHHHhhhhccccCC----C-CHHHHHHHh---------hhccccCCCCc-hHHHHHHHHHHhhh
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERG----R-DVDSVLEQY---------ADVIIPRGGDN-HVAIDLIVQHIHTK 62 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rg----r-~~~~v~~qy---------aD~iip~~~~~-~~a~~~i~~~i~~~ 62 (283)
+.||+++|.+++..|=..|+ ..|. . ..+.+.+.| ||++|.++..+ +..++.|.+.+...
T Consensus 229 ~~V~L~a~~e~~~~Rl~~r~-~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~t~~~s~ee~~~~I~~~l~~~ 302 (309)
T PRK08154 229 YTVWLKASPEEHMARVRAQG-DLRPMADNREAMEDLRRILASREPLYARADAVVDTSGLTVAQSLARLRELVRPA 302 (309)
T ss_pred EEEEEECCHHHHHHHHhcCC-CCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 57999999998777644443 2222 1 134443333 99999876532 33445555555443
No 168
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=49.54 E-value=31 Score=37.18 Aligned_cols=62 Identities=16% Similarity=0.312 Sum_probs=40.9
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh------------------hhccccCCCCchHHHHHHHHHHhhhh
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVIIPRGGDNHVAIDLIVQHIHTKL 63 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy------------------aD~iip~~~~~~~a~~~i~~~i~~~l 63 (283)
|+|||++++.++|-.||..--.. .-+.++++++. .|-|+=.+. +..++.+++.|.+..
T Consensus 208 ~~KifL~As~e~RA~RR~~e~~~--~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts--~l~ieevv~~i~~~~ 283 (863)
T PRK12269 208 DLKCYLDASIEARVARRWAQGTS--RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTS--CLTIEEVCERIAREA 283 (863)
T ss_pred CEEEEEECCHHHHHHHHHHhhhc--cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECC--CCCHHHHHHHHHHHH
Confidence 79999999999999999755432 36677777665 244333222 234666667776666
Q ss_pred cccc
Q 023344 64 GQHD 67 (283)
Q Consensus 64 ~~~~ 67 (283)
..+-
T Consensus 284 ~~~~ 287 (863)
T PRK12269 284 HRRA 287 (863)
T ss_pred Hhcc
Confidence 5543
No 169
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=49.02 E-value=2.4e+02 Score=26.81 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=62.3
Q ss_pred ccceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHH---HHHHHHH
Q 023344 141 CKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNS---ANQAIQL 217 (283)
Q Consensus 141 ~~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t---~~~ai~~ 217 (283)
.++..+++ ..+...+.+.+.+.+-+.+.|.+-+.+=.. |....+.+++.++.|+.|+++=++-.. .. +...++.
T Consensus 14 ~~~~~i~~-g~~~~~LA~~ia~~l~g~~l~~~~~~~FpD-GE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dA 90 (326)
T PLN02297 14 KKQVHLFY-CEETEELARKIAAESDAIELGSINWRKFPD-GFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYA 90 (326)
T ss_pred CCCeEEEE-CCCCHHHHHHHHHHhCCCceeeeEEEECCC-CCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHH
Confidence 34544443 367778999988876678888877765433 333446677788999999998875433 33 3456678
Q ss_pred HHHcCCCCccEEEEEEee
Q 023344 218 LIEKGVPESHIIFLNLIS 235 (283)
Q Consensus 218 L~~~G~~e~~I~~v~~va 235 (283)
|++.|+ ++|.++.+..
T Consensus 91 lr~~ga--~~i~~ViPY~ 106 (326)
T PLN02297 91 LPKLFV--ASFTLVLPFF 106 (326)
T ss_pred HHHcCC--CEEEEEeeCC
Confidence 889999 7898888543
No 170
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=48.69 E-value=1.8e+02 Score=28.31 Aligned_cols=85 Identities=8% Similarity=0.081 Sum_probs=55.6
Q ss_pred ceeEEEecccchHHHHHHHHhc---------------c----C--ceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEE
Q 023344 143 KLCGVSIVRSGESMENALRACC---------------K----G--IKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLL 201 (283)
Q Consensus 143 ~i~~V~IlRaG~~m~~~l~~~~---------------p----~--a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~ 201 (283)
+..+++ +.++..+.+.+.+.+ - + .+.|.+-+.+=.. ...|.+++.++.|+.|+|+
T Consensus 8 ~~~i~~-~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpD---GE~~vri~~~Vrg~dV~iv 83 (382)
T PRK06827 8 SLGIIA-LPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSN---GEAKGEILESVRGKDIYIL 83 (382)
T ss_pred ceEEEE-CCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCC---CCEEEEECCCCCCCeEEEE
Confidence 445555 677888888777766 1 2 2244444433211 3468889999999999999
Q ss_pred cCccc--------------c-hH---HHHHHHHHHHHcCCCCccEEEEEEe
Q 023344 202 DPVLA--------------T-GN---SANQAIQLLIEKGVPESHIIFLNLI 234 (283)
Q Consensus 202 Dp~ia--------------T-G~---t~~~ai~~L~~~G~~e~~I~~v~~v 234 (283)
-++.. . -. -+...++.++ .|+ ++|.++.+.
T Consensus 84 qs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA--~rIt~ViPY 131 (382)
T PRK06827 84 QDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKA--RRITVIMPF 131 (382)
T ss_pred ecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCC--CeEEEEeec
Confidence 98642 1 22 2344788899 998 789888853
No 171
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=48.42 E-value=2.2e+02 Score=26.93 Aligned_cols=77 Identities=14% Similarity=0.271 Sum_probs=53.1
Q ss_pred ccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH----HHHHHHHHHHHcCCCCc
Q 023344 151 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN----SANQAIQLLIEKGVPES 226 (283)
Q Consensus 151 RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~----t~~~ai~~L~~~G~~e~ 226 (283)
.+...+.+.+.+.+ +.+.|.+.+.+=.. .+.|.+++.++.|+.|+++=..-...+ -+...++.|++.|+ +
T Consensus 13 ~~~~~La~~ia~~l-g~~l~~~~~~~Fpd---GE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~a--~ 86 (319)
T PRK04923 13 NANKPLAQSICKEL-GVRMGKALVTRFSD---GEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASA--A 86 (319)
T ss_pred CCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCC--c
Confidence 55667777777765 66677776665322 246888899999999988854322222 34556778889999 7
Q ss_pred cEEEEEE
Q 023344 227 HIIFLNL 233 (283)
Q Consensus 227 ~I~~v~~ 233 (283)
+|.++.+
T Consensus 87 ~i~~ViP 93 (319)
T PRK04923 87 SVTAVIP 93 (319)
T ss_pred EEEEEee
Confidence 8988875
No 172
>PRK00625 shikimate kinase; Provisional
Probab=48.01 E-value=48 Score=28.28 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=27.0
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCC---CCHHHHHHHh-------hhccccCC
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERG---RDVDSVLEQY-------ADVIIPRG 45 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rg---r~~~~v~~qy-------aD~iip~~ 45 (283)
...||++++.++...|-..|+..++. ..+++++++. ||++|+..
T Consensus 97 ~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad~~i~~~ 150 (173)
T PRK00625 97 GLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIADYIFSLD 150 (173)
T ss_pred CEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCCEEEeCC
Confidence 35799999988766655556554433 2233444333 99987643
No 173
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=47.96 E-value=1.5e+02 Score=27.66 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=53.0
Q ss_pred ccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH---HHHHHHHHHHHcCCCCcc
Q 023344 151 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN---SANQAIQLLIEKGVPESH 227 (283)
Q Consensus 151 RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~---t~~~ai~~L~~~G~~e~~ 227 (283)
.+...|.+.+.+.+ +.+.|.+-..+=.. .+.|.++++++.|+.|+++-.+..--. -+...++.|++.|+ ++
T Consensus 9 ~~~~~la~~ia~~l-g~~~~~~~~~~F~d---GE~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a--~~ 82 (301)
T PRK07199 9 PGNEAAAGRLAAAL-GVEVGRIELHRFPD---GESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGA--RR 82 (301)
T ss_pred CCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCC--Ce
Confidence 34456777776655 56677666654322 245788888999999999988654322 34567788899999 78
Q ss_pred EEEEEE
Q 023344 228 IIFLNL 233 (283)
Q Consensus 228 I~~v~~ 233 (283)
|.++.+
T Consensus 83 i~~ViP 88 (301)
T PRK07199 83 VGLVAP 88 (301)
T ss_pred EEEEee
Confidence 988774
No 174
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=47.07 E-value=73 Score=24.05 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEEeeC---------HHHHHHHHHhCCCcEEEEE
Q 023344 210 SANQAIQLLIEKGVPESHIIFLNLISA---------PEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 210 t~~~ai~~L~~~G~~e~~I~~v~~vas---------~~gl~~l~~~~P~v~I~ta 255 (283)
++..+++.|.+.|+ ++|+++-++.+ ++.++++.+.||++++..+
T Consensus 45 ~~~~~l~~l~~~g~--~~v~vvPlfl~~G~h~~~dip~~~~~~~~~~~~~~i~~~ 97 (101)
T cd03416 45 SLAEALDELAAQGA--TRIVVVPLFLLAGGHVKEDIPAALAAARARHPGVRIRYA 97 (101)
T ss_pred CHHHHHHHHHHcCC--CEEEEEeeEeCCCccccccHHHHHHHHHHHCCCeEEEec
Confidence 45568889999998 67888775443 4466777778998887664
No 175
>PLN02469 hydroxyacylglutathione hydrolase
Probab=45.96 E-value=57 Score=29.68 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=37.9
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE-E-eeCHHHHHHHHHhCCCcEEEEEeec
Q 023344 195 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN-L-ISAPEGIHCVCKRFPSLKIVTSEID 258 (283)
Q Consensus 195 ~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~-~-vas~~gl~~l~~~~P~v~I~ta~iD 258 (283)
++.++++||. .....++.+++.|.+.+. +++| . .-=-.|+..|.+.||+++||...-|
T Consensus 22 ~~~~vlIDp~-----~~~~il~~l~~~g~~l~~-Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~ 81 (258)
T PLN02469 22 TKDAAVVDPV-----DPEKVLQAAHEHGAKIKL-VLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLD 81 (258)
T ss_pred CCeEEEECCC-----ChHHHHHHHHHcCCcccE-EEecCCCCccccCHHHHHHHCCCCEEEEechh
Confidence 4679999996 234566677777763211 1112 0 1124688999999999999987654
No 176
>PRK13975 thymidylate kinase; Provisional
Probab=45.80 E-value=34 Score=28.90 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=16.8
Q ss_pred CeEEEEeCCchhHHHHhhhhc
Q 023344 2 NMKIFVDTDADVRLARRIRRD 22 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd 22 (283)
|+.+|++++.++.+.|-..|+
T Consensus 115 d~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 115 DLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred CEEEEEcCCHHHHHHHHhccC
Confidence 788999999998877655553
No 177
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=45.24 E-value=87 Score=27.86 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=54.0
Q ss_pred eEEEEeCCchhHHHHhhhhccccCCCCHHHHH----HHh-----------hhccccCCCCchHHHHHHHHHHhhhhcccc
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVL----EQY-----------ADVIIPRGGDNHVAIDLIVQHIHTKLGQHD 67 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~----~qy-----------aD~iip~~~~~~~a~~~i~~~i~~~l~~~~ 67 (283)
..||+++|.+.++.|...|.- ..+ ++++ +.| ++++|....+ ...+.+.+.|.+.+..
T Consensus 98 ~~I~l~~p~e~~~~Rn~~R~~---~~~-~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~~--~~~~ei~~~i~~~~~~-- 169 (249)
T TIGR03574 98 IIIYLKAPLDTLLRRNIERGE---KIP-NEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKK--IDYNEILEEILEISEN-- 169 (249)
T ss_pred EEEEecCCHHHHHHHHHhCCC---CCC-HHHHHHHHHhhCCCCCCCCccCceEEecCCCC--CCHHHHHHHHHHHhhc--
Confidence 468999999999988776642 122 3333 222 7777765432 2345555555554431
Q ss_pred cccCCCceeeecCchHHHHHhHhhhcCCCChhhhHhhHHHHHHHHHHHHhCC
Q 023344 68 LCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGH 119 (283)
Q Consensus 68 ~~~~~~~v~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~ 119 (283)
.++ |+ .-|. ++-++...|.+-+|+..+-++-+.++.
T Consensus 170 --~~~--------~~----~~~~--~~~~~~~~~l~~ld~~~~~~i~~~~~~ 205 (249)
T TIGR03574 170 --KLK--------IE----KPKK--PKRRTDENILNKIDKRTRQIVGELIKT 205 (249)
T ss_pred --cCC--------hh----hhhh--hcccccccHHHHHHHHHHHHHHHHHHh
Confidence 011 11 1121 334455668888888888888777765
No 178
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.56 E-value=1.6e+02 Score=27.96 Aligned_cols=78 Identities=14% Similarity=0.231 Sum_probs=55.6
Q ss_pred ccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc-hH---HHHHHHHHHHHcCCCCc
Q 023344 151 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-GN---SANQAIQLLIEKGVPES 226 (283)
Q Consensus 151 RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaT-G~---t~~~ai~~L~~~G~~e~ 226 (283)
.+...|.+.+.+.+ +++.|.+-++|=.. ...|.++++++.|+.|+|+=++... .. -+...++.|++.|+ +
T Consensus 16 ~~~~~La~~ia~~l-g~~l~~~~~~~Fpd---GE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a--~ 89 (332)
T PRK00553 16 SKAKKLVDSICRKL-SMKPGEIVIQKFAD---GETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSA--K 89 (332)
T ss_pred CCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCC--C
Confidence 55667777777765 67788777765432 2468888889999999998775432 11 24567788999999 7
Q ss_pred cEEEEEEe
Q 023344 227 HIIFLNLI 234 (283)
Q Consensus 227 ~I~~v~~v 234 (283)
+|.++.+.
T Consensus 90 ~i~~ViPY 97 (332)
T PRK00553 90 SITAILPY 97 (332)
T ss_pred eEEEEeec
Confidence 89888753
No 179
>PLN02757 sirohydrochlorine ferrochelatase
Probab=44.49 E-value=51 Score=27.76 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEEeeC---------HHHHHHHHHhCCCcEEEEE
Q 023344 210 SANQAIQLLIEKGVPESHIIFLNLISA---------PEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 210 t~~~ai~~L~~~G~~e~~I~~v~~vas---------~~gl~~l~~~~P~v~I~ta 255 (283)
++..+++.+.+.|+ ++|+++=++-+ |+-++++.+.||+++|+.+
T Consensus 59 sl~eal~~l~~~g~--~~vvVvP~FL~~G~H~~~DIp~~v~~~~~~~p~~~i~~~ 111 (154)
T PLN02757 59 SIKDAFGRCVEQGA--SRVIVSPFFLSPGRHWQEDIPALTAEAAKEHPGVKYLVT 111 (154)
T ss_pred CHHHHHHHHHHCCC--CEEEEEEhhhcCCcchHhHHHHHHHHHHHHCCCcEEEEC
Confidence 56677787777787 57776664432 4466677888888887665
No 180
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.35 E-value=2.4e+02 Score=26.49 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=50.8
Q ss_pred ccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH----HHHHHHHHHHHcCCCCc
Q 023344 151 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN----SANQAIQLLIEKGVPES 226 (283)
Q Consensus 151 RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~----t~~~ai~~L~~~G~~e~ 226 (283)
.+...+.+.+.+.+ +.+.|.+-..+=.. .+.|.++++++.|+.|+++=..-...+ -+...++.+++.|+ +
T Consensus 7 ~~~~~la~~ia~~l-g~~~~~~~~~~Fpd---GE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga--~ 80 (309)
T PRK01259 7 NANPELAEKIAKYL-GIPLGKASVGRFSD---GEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASA--G 80 (309)
T ss_pred CCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCC--c
Confidence 34456666666653 55666555543222 246888888999999999855322212 25567888999998 7
Q ss_pred cEEEEEEe
Q 023344 227 HIIFLNLI 234 (283)
Q Consensus 227 ~I~~v~~v 234 (283)
+|.++.+.
T Consensus 81 ~i~lViPY 88 (309)
T PRK01259 81 RITAVIPY 88 (309)
T ss_pred eEEEEeec
Confidence 89888753
No 181
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=44.32 E-value=61 Score=26.94 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=19.4
Q ss_pred CeEEEEeCCchhHHHHhhhhccc
Q 023344 2 NMKIFVDTDADVRLARRIRRDTV 24 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~ 24 (283)
|+.||+++|.++++.|...|+-.
T Consensus 127 ~~~i~l~~~~~~~~~R~~~R~~~ 149 (200)
T cd01672 127 DLTILLDIDPEVGLARIEARGRD 149 (200)
T ss_pred CEEEEEeCCHHHHHHHHHhcCCc
Confidence 68899999999999988777643
No 182
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=43.96 E-value=41 Score=31.32 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=38.3
Q ss_pred cCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCC
Q 023344 188 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPS 249 (283)
Q Consensus 188 ~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~ 249 (283)
..|.+.++++++| +..||++.+++-.|+++|+ ++|++++= +.+-.+++.+.|++
T Consensus 119 ~~~~~~~~~~vli----lGAGGAarAv~~aL~~~g~--~~i~V~NR--t~~ra~~La~~~~~ 172 (283)
T COG0169 119 GLPVDVTGKRVLI----LGAGGAARAVAFALAEAGA--KRITVVNR--TRERAEELADLFGE 172 (283)
T ss_pred CCCcccCCCEEEE----ECCcHHHHHHHHHHHHcCC--CEEEEEeC--CHHHHHHHHHHhhh
Confidence 3444567888886 4689999999999999999 67877763 23334555555553
No 183
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=43.69 E-value=70 Score=26.41 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=15.2
Q ss_pred CeEEEEeCCchhHHHHhhhh
Q 023344 2 NMKIFVDTDADVRLARRIRR 21 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~r 21 (283)
++.||+++|.++.+.|-..|
T Consensus 95 ~~~v~l~~~~~~~~~Rl~~r 114 (171)
T PRK03731 95 GIVIYLCAPVSVLANRLEAN 114 (171)
T ss_pred CEEEEEECCHHHHHHHHccc
Confidence 57899999999887654443
No 184
>PRK00865 glutamate racemase; Provisional
Probab=42.27 E-value=53 Score=29.88 Aligned_cols=86 Identities=12% Similarity=0.211 Sum_probs=49.2
Q ss_pred EEecc---cchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCC
Q 023344 147 VSIVR---SGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 223 (283)
Q Consensus 147 V~IlR---aG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~ 223 (283)
|.|.- +|+..++.+++.+|+...=+++= -...|-..+.+.-+ -.-+..+++.|.+.|+
T Consensus 8 IgvfDSGiGGLtvl~~i~~~lp~~~~iY~~D-----------~~~~PYG~ks~~~i--------~~~~~~~~~~L~~~g~ 68 (261)
T PRK00865 8 IGVFDSGVGGLTVLREIRRLLPDEHIIYVGD-----------TARFPYGEKSEEEI--------RERTLEIVEFLLEYGV 68 (261)
T ss_pred EEEEECCccHHHHHHHHHHHCCCCCEEEEec-----------CCCCCCCCCCHHHH--------HHHHHHHHHHHHhCCC
Confidence 44554 46668899999999987622111 13555433332111 1334467778888887
Q ss_pred CCccEEEEEEeeCHHHHHHHHHhCCCcEEEE
Q 023344 224 PESHIIFLNLISAPEGIHCVCKRFPSLKIVT 254 (283)
Q Consensus 224 ~e~~I~~v~~vas~~gl~~l~~~~P~v~I~t 254 (283)
+-|++.|-=++.-+++.+.+.+ ++.|+-
T Consensus 69 --d~iVIaCNTa~~~~l~~lr~~~-~iPvig 96 (261)
T PRK00865 69 --KMLVIACNTASAVALPDLRERY-DIPVVG 96 (261)
T ss_pred --CEEEEeCchHHHHHHHHHHHhC-CCCEEe
Confidence 3343333333335788888877 566654
No 185
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=41.97 E-value=49 Score=30.48 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=36.0
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCC
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 248 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P 248 (283)
++++++|+|+ .+|++..+++..|.+.|+ ++|.+++= +++-.+++.+.+.
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~--~~i~I~nR--t~~ka~~La~~~~ 170 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGV--TDITVINR--NPDKLSRLVDLGV 170 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCC--CeEEEEeC--CHHHHHHHHHHhh
Confidence 3568888754 789999999999999999 67877652 3445566655543
No 186
>PRK05541 adenylylsulfate kinase; Provisional
Probab=40.96 E-value=17 Score=30.49 Aligned_cols=15 Identities=13% Similarity=0.496 Sum_probs=11.8
Q ss_pred eEEEEeCCchhHHHH
Q 023344 3 MKIFVDTDADVRLAR 17 (283)
Q Consensus 3 ~~ifv~~~~d~~l~r 17 (283)
+.||+++|.++.+.|
T Consensus 104 ~~v~l~~~~e~~~~R 118 (176)
T PRK05541 104 FEVYLKCDMEELIRR 118 (176)
T ss_pred EEEEEeCCHHHHHHh
Confidence 568999999966665
No 187
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=40.40 E-value=1.1e+02 Score=27.47 Aligned_cols=51 Identities=16% Similarity=0.360 Sum_probs=35.8
Q ss_pred cEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeC------HHHHHHHHHhCCCcEEEEEe
Q 023344 196 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA------PEGIHCVCKRFPSLKIVTSE 256 (283)
Q Consensus 196 ~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas------~~gl~~l~~~~P~v~I~ta~ 256 (283)
+.++++||.- ....++.|++.|...+ .++.+ -.|+..+.++||+++||...
T Consensus 22 ~~~ilIDpg~-----~~~vl~~l~~~g~~l~-----~IllTH~H~DHigG~~~l~~~~~~~~V~~~~ 78 (251)
T PRK10241 22 GRCLIVDPGE-----AEPVLNAIAENNWQPE-----AIFLTHHHHDHVGGVKELVEKFPQIVVYGPQ 78 (251)
T ss_pred CcEEEECCCC-----hHHHHHHHHHcCCccC-----EEEeCCCCchhhccHHHHHHHCCCCEEEecc
Confidence 5688899863 2456777778776432 23443 35899999999999999754
No 188
>PLN02384 ribose-5-phosphate isomerase
Probab=39.94 E-value=84 Score=29.08 Aligned_cols=67 Identities=15% Similarity=0.267 Sum_probs=38.1
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEE-EEEEeeCHHHHHHHHH---------hCCCcEEEEEeecCCCCCCCeeecCCC
Q 023344 204 VLATGNSANQAIQLLIEKGVPESHII-FLNLISAPEGIHCVCK---------RFPSLKIVTSEIDVALNEEFRVIPGLG 272 (283)
Q Consensus 204 ~iaTG~t~~~ai~~L~~~G~~e~~I~-~v~~vas~~gl~~l~~---------~~P~v~I~ta~iD~~ln~~~~ivPGlG 272 (283)
.+.||.|+..+++.|.++... ..+. +.++-.|.+.-....+ .++.+.|+.-.-|+ +|.+...+-|-|
T Consensus 54 GLGTGSTv~~~I~~La~r~~~-~~l~~I~~VpTS~~T~~~a~~~GIpl~~l~~v~~iDiaiDGADE-Id~~lnlIKGGG 130 (264)
T PLN02384 54 GLGTGSTAKHAVDRIGELLRQ-GKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADE-VDPNLNLVKGRG 130 (264)
T ss_pred EecchHHHHHHHHHHHHhhhh-ccccceEEEcCcHHHHHHHHHcCCcEeccccCCcccEEEECCce-eCCCCCEEEeCc
Confidence 789999999999999876543 3333 3333344443333222 23444455444333 344556777766
No 189
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=39.62 E-value=92 Score=28.19 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=39.6
Q ss_pred cccchHHHHHHHHHHHHcCCCCc-cEEEEEEeeCHHHHHHHHH----------hCCCcEEEEEeecCCCCCCCeeecCCC
Q 023344 204 VLATGNSANQAIQLLIEKGVPES-HIIFLNLISAPEGIHCVCK----------RFPSLKIVTSEIDVALNEEFRVIPGLG 272 (283)
Q Consensus 204 ~iaTG~t~~~ai~~L~~~G~~e~-~I~~v~~vas~~gl~~l~~----------~~P~v~I~ta~iD~~ln~~~~ivPGlG 272 (283)
.+.||.|+...++.|-+ .+..+ +|.. +++...=+.+.+ .+|.+.|+.-.-| ++|.++..+-|-|
T Consensus 25 GlGTGST~~~fI~~Lg~-~~~~e~~i~~---V~TS~~t~~l~~~~GI~v~~l~~~~~lDl~iDGAD-Evd~~~~lIKGGG 99 (227)
T COG0120 25 GLGTGSTAAYFIEALGR-RVKGELDIGG---VPTSFQTEELARELGIPVSSLNEVDSLDLAIDGAD-EVDPNLNLIKGGG 99 (227)
T ss_pred EEcCcHHHHHHHHHHHH-hhccCccEEE---EeCCHHHHHHHHHcCCeecCccccCccceEeeccc-ccCCCCCEEccCh
Confidence 57999999999999975 33222 3433 333333333332 2334455554433 4677788899888
Q ss_pred chh
Q 023344 273 EFG 275 (283)
Q Consensus 273 d~G 275 (283)
-+-
T Consensus 100 gAl 102 (227)
T COG0120 100 GAL 102 (227)
T ss_pred HHH
Confidence 654
No 190
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=39.19 E-value=2.3e+02 Score=26.86 Aligned_cols=85 Identities=9% Similarity=0.135 Sum_probs=57.9
Q ss_pred ceeEEEecccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc-hH---HHHHHHHHH
Q 023344 143 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-GN---SANQAIQLL 218 (283)
Q Consensus 143 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaT-G~---t~~~ai~~L 218 (283)
+.++++ ..+...|.+.+.+.+ +++.|++...+=.. .+.|.+++.++.|+.|+++-.+-.. -. -+...++.|
T Consensus 9 ~~~i~~-~~~~~~la~~ia~~l-g~~l~~~~~~~Fpd---GE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~al 83 (323)
T PRK02458 9 QIKLFS-LNSNLEIAEKIAQAA-GVPLGKLSSRQFSD---GEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDAC 83 (323)
T ss_pred CeEEEE-CCCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHH
Confidence 444443 366677888877755 67787776665322 2468899999999999998765322 22 345567788
Q ss_pred HHcCCCCccEEEEEEe
Q 023344 219 IEKGVPESHIIFLNLI 234 (283)
Q Consensus 219 ~~~G~~e~~I~~v~~v 234 (283)
++.|+ ++|.++.+.
T Consensus 84 r~~~a--~~i~lViPY 97 (323)
T PRK02458 84 KRASA--NTVNVVLPY 97 (323)
T ss_pred HHcCC--ceEEEEEec
Confidence 99999 789888853
No 191
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=38.73 E-value=1.6e+02 Score=21.71 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=36.6
Q ss_pred cEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeC-----H---HHHHHHHHhCCCcEEEEEeecC
Q 023344 196 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA-----P---EGIHCVCKRFPSLKIVTSEIDV 259 (283)
Q Consensus 196 ~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas-----~---~gl~~l~~~~P~v~I~ta~iD~ 259 (283)
...++.| .-.+=.++.++++.|++.-...+.|.++....- . ..+.++...+.+. +++...++
T Consensus 13 ~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~-vi~~~~~~ 82 (91)
T PF02875_consen 13 GPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADV-VILTGDNP 82 (91)
T ss_dssp TEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSE-EEEETSBT
T ss_pred CcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCE-EEEcCCCC
Confidence 3455666 999999999999999987433233344444322 1 3566777766666 55544433
No 192
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=38.60 E-value=1.8e+02 Score=27.57 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=55.6
Q ss_pred ccchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH----HHHHHHHHHHHcCCCCc
Q 023344 151 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN----SANQAIQLLIEKGVPES 226 (283)
Q Consensus 151 RaG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~----t~~~ai~~L~~~G~~e~ 226 (283)
.+...+.+.+.+.+ +.++|+....|=.. ...|.++++.+.|+.|+|+.+.....+ -+.-.++.+++.|+ +
T Consensus 11 ~s~~~La~~ia~~l-~~~l~~~~~~rF~D---GE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA--~ 84 (314)
T COG0462 11 SSNPELAEKIAKRL-GIPLGKVEVKRFPD---GEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASA--K 84 (314)
T ss_pred CCCHHHHHHHHHHh-CCCcccceeEEcCC---CcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC--c
Confidence 45555666665542 55666666655322 246899999999999999999988666 34456778899998 7
Q ss_pred cEEEEEEe
Q 023344 227 HIIFLNLI 234 (283)
Q Consensus 227 ~I~~v~~v 234 (283)
+|.++-+.
T Consensus 85 ~It~ViPY 92 (314)
T COG0462 85 RITAVIPY 92 (314)
T ss_pred eEEEEeec
Confidence 89888753
No 193
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=38.58 E-value=1.7e+02 Score=22.47 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=38.6
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeC------HHHHHHHHHhCCCcEEEEEeecC
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA------PEGIHCVCKRFPSLKIVTSEIDV 259 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas------~~gl~~l~~~~P~v~I~ta~iD~ 259 (283)
.|..|.++|+.... ....+.+++..+ +++.++...+ .+=++.+++..|++.|+.+....
T Consensus 27 ~G~~v~~~d~~~~~----~~l~~~~~~~~p---d~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 27 AGHEVDILDANVPP----EELVEALRAERP---DVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp TTBEEEEEESSB-H----HHHHHHHHHTTC---SEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred CCCeEEEECCCCCH----HHHHHHHhcCCC---cEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 36788888887744 555666777765 5777777332 22344455568999999988653
No 194
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=38.10 E-value=23 Score=30.37 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=17.0
Q ss_pred EEEEcCcccchHHHHHHHHHHHH
Q 023344 198 VLLLDPVLATGNSANQAIQLLIE 220 (283)
Q Consensus 198 Vil~Dp~iaTG~t~~~ai~~L~~ 220 (283)
-.++|||+.||.-++.|......
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~ 52 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGAN 52 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTT
T ss_pred CEEeecCCCCCHHHHHHHHHhhC
Confidence 47999999999999988665543
No 195
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.91 E-value=1.6e+02 Score=27.53 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=43.8
Q ss_pred CceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc-h-H--HHHHHHHHHHHcCCCCccEEEEEEe
Q 023344 166 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-G-N--SANQAIQLLIEKGVPESHIIFLNLI 234 (283)
Q Consensus 166 ~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaT-G-~--t~~~ai~~L~~~G~~e~~I~~v~~v 234 (283)
+.+.|.+-..+=.. ...|.++++++.|+.|+++-.+... . . -+...++.+++.|+ ++|.++.+.
T Consensus 10 ~~~l~~~~~~~F~D---GE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a--~~i~~ViPY 77 (304)
T PRK03092 10 GVEVTPTTAYDFAN---GEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASA--KRITVVLPF 77 (304)
T ss_pred CCceeeeEEEECCC---CCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCC--CeEEEEEec
Confidence 44555555543221 2468888999999999998875542 2 2 24667889999999 789888753
No 196
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=36.51 E-value=79 Score=26.42 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=24.1
Q ss_pred EEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh--------hhccccCCCC
Q 023344 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY--------ADVIIPRGGD 47 (283)
Q Consensus 4 ~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy--------aD~iip~~~~ 47 (283)
-||+++|.+++..|...|-- +.......|+ .|++|+.+..
T Consensus 114 ~v~l~~~~~~l~~R~~~R~~----~~~~~~~~~~~~~~~~~~~dl~iDts~~ 161 (175)
T cd00227 114 WVGVRCPGEVAEGRETARGD----RVPGQARKQARVVHAGVEYDLEVDTTHK 161 (175)
T ss_pred EEEEECCHHHHHHHHHhcCC----ccchHHHHHHHHhcCCCcceEEEECCCC
Confidence 47899998877777666531 1222222233 5888887654
No 197
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=36.18 E-value=1.3e+02 Score=27.18 Aligned_cols=68 Identities=9% Similarity=0.109 Sum_probs=37.8
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHH---------hCCCcEEEEEeecCCCCCCCeeecCCCc
Q 023344 204 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK---------RFPSLKIVTSEIDVALNEEFRVIPGLGE 273 (283)
Q Consensus 204 ~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~---------~~P~v~I~ta~iD~~ln~~~~ivPGlGd 273 (283)
.+.||.|+..+++.|.++... +...+.++-.|.+.-....+ .++.+.|+.-.-|+ ++.+...+-|-|-
T Consensus 26 GLGTGSTv~~~i~~L~~~~~~-~~l~i~~VptS~~t~~~a~~~Gipl~~l~~~~~iDiaiDGADe-vd~~lnlIKGgGg 102 (228)
T PRK13978 26 GIGTGSTMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADE-VDPSLNIIKGGGG 102 (228)
T ss_pred EeCchHHHHHHHHHHHHHhhc-cCccEEEEeCcHHHHHHHHHcCCcEechhhCCceeEEEecCce-ecCCccEEecCcH
Confidence 689999999999999876532 23333333344442222222 22334455443333 3555567777663
No 198
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=35.53 E-value=1.4e+02 Score=27.51 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 023344 193 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 233 (283)
Q Consensus 193 i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~ 233 (283)
+++++++|+ .+||+..++...|.+.|+ ++|.+++-
T Consensus 124 ~~~k~vlI~----GAGGagrAia~~La~~G~--~~V~I~~R 158 (289)
T PRK12548 124 VKGKKLTVI----GAGGAATAIQVQCALDGA--KEITIFNI 158 (289)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHHHHCCC--CEEEEEeC
Confidence 567888765 568888899999999998 56777653
No 199
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=35.49 E-value=1.3e+02 Score=26.98 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=42.2
Q ss_pred EEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEE
Q 023344 197 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 254 (283)
Q Consensus 197 ~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~t 254 (283)
.+.++++.- +......+++.+.+.|+ ++++.+-..-.+.+.+++++||+++...
T Consensus 33 ~~~~~e~~~-~~~~~~~~i~~~~~~g~---dlIi~~g~~~~~~~~~vA~~~p~~~F~~ 86 (258)
T cd06353 33 EVTYVENVP-EGADAERVLRELAAQGY---DLIFGTSFGFMDAALKVAKEYPDVKFEH 86 (258)
T ss_pred eEEEEecCC-chHhHHHHHHHHHHcCC---CEEEECchhhhHHHHHHHHHCCCCEEEE
Confidence 456666665 46788899999999897 5777777777888999999999887544
No 200
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=35.37 E-value=2.4e+02 Score=26.40 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=43.3
Q ss_pred CceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc--hH--HHHHHHHHHHHcCCCCccEEEEEEe
Q 023344 166 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT--GN--SANQAIQLLIEKGVPESHIIFLNLI 234 (283)
Q Consensus 166 ~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaT--G~--t~~~ai~~L~~~G~~e~~I~~v~~v 234 (283)
+.+.|.+-+++=.. .+.|.++++++.|+.|+|+-++... -. -+...++.+++.|+ ++|.++.+.
T Consensus 12 g~~l~~~~~~~Fpd---GE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a--~~i~~ViPY 79 (302)
T PLN02369 12 GLELGKITIKRFAD---GEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASA--KRITAVIPY 79 (302)
T ss_pred CCceeeeEEEECCC---CCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCC--CeEEEEeec
Confidence 45566555543222 2357788889999999999886532 12 24567788999998 788888753
No 201
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=35.30 E-value=54 Score=24.05 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=24.9
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEE
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 229 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~ 229 (283)
+++.++++.. +|.++..+...|++.|. .++.
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~--~~v~ 85 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGF--TDVR 85 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCC--ceEE
Confidence 4677888776 88899999999999998 4554
No 202
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=34.89 E-value=79 Score=23.42 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=24.6
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v 231 (283)
+++.|++++ .+|.....+...|++.|. +++.++
T Consensus 55 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~--~~v~~l 87 (96)
T cd01529 55 RATRYVLTC---DGSLLARFAAQELLALGG--KPVALL 87 (96)
T ss_pred CCCCEEEEe---CChHHHHHHHHHHHHcCC--CCEEEe
Confidence 466788876 477888888889999998 466543
No 203
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=34.87 E-value=94 Score=27.21 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=16.2
Q ss_pred CeEEEEeCCchhHHHHhhhh
Q 023344 2 NMKIFVDTDADVRLARRIRR 21 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~r 21 (283)
|+.||+++|.+.++.|--.|
T Consensus 144 d~~i~l~~~~~~~~~Ri~~R 163 (219)
T cd02030 144 HLVIYLDVPVPEVQKRIKKR 163 (219)
T ss_pred CEEEEEeCCHHHHHHHHHHc
Confidence 88999999999888774443
No 204
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=33.96 E-value=82 Score=22.25 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=25.0
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v 231 (283)
+++.|++++.- |..+..+...|++.|. .++.++
T Consensus 49 ~~~~vv~~c~~---~~~a~~~~~~l~~~G~--~~v~~l 81 (89)
T cd00158 49 KDKPIVVYCRS---GNRSARAAKLLRKAGG--TNVYNL 81 (89)
T ss_pred CCCeEEEEeCC---CchHHHHHHHHHHhCc--ccEEEe
Confidence 46778887755 7888899999999997 466543
No 205
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=33.86 E-value=67 Score=26.90 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=32.4
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHh
Q 023344 204 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR 246 (283)
Q Consensus 204 ~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~ 246 (283)
...+...+.+|-+.|+..|+ ++| +..-..+.+|+++|.+.
T Consensus 101 l~~~~~~i~~a~~~L~~aG~--~~i-f~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 101 LPSDDANIERAKKWLKNAGV--KEI-FEVSAVTGEGIEELKDY 140 (143)
T ss_pred CccchhhHHHHHHHHHHcCC--CCe-EEEECCCCcCHHHHHHH
Confidence 44467899999999999999 567 66667789999999763
No 206
>PRK03846 adenylylsulfate kinase; Provisional
Probab=33.84 E-value=49 Score=28.42 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=12.6
Q ss_pred EEEEeCCchhHHHH
Q 023344 4 KIFVDTDADVRLAR 17 (283)
Q Consensus 4 ~ifv~~~~d~~l~r 17 (283)
.||+++|.+++..|
T Consensus 125 ~V~L~~~~e~~~~R 138 (198)
T PRK03846 125 EVFVDTPLAICEAR 138 (198)
T ss_pred EEEEcCCHHHHHhc
Confidence 69999999998888
No 207
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=33.77 E-value=83 Score=31.07 Aligned_cols=60 Identities=20% Similarity=0.414 Sum_probs=40.7
Q ss_pred EEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE-----eeCHHHHHHHHHhCCCcEEEEEeecC
Q 023344 197 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL-----ISAPEGIHCVCKRFPSLKIVTSEIDV 259 (283)
Q Consensus 197 ~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~-----vas~~gl~~l~~~~P~v~I~ta~iD~ 259 (283)
.-++++.-+.++.....-++.|.+.|+ +++.+.. ....+-++++.+.||++.|+++.+..
T Consensus 211 g~l~V~aav~~~~~~~~r~~~L~~aG~---d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t 275 (450)
T TIGR01302 211 GRLIVGAAVGTREFDKERAEALVKAGV---DVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVAT 275 (450)
T ss_pred CCEEEEEEecCchhHHHHHHHHHHhCC---CEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 457778777776655555667888887 3544443 22345688888888998888876644
No 208
>PRK11524 putative methyltransferase; Provisional
Probab=33.71 E-value=30 Score=31.84 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=27.3
Q ss_pred cEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHh
Q 023344 196 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR 246 (283)
Q Consensus 196 ~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~ 246 (283)
..=+|+||-..||.|+.+|.+. |. .++++=..++-++...++
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~l----gR-----~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKAS----GR-----KFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHc----CC-----CEEEEeCCHHHHHHHHHH
Confidence 3446899999999999999874 32 234444455555444443
No 209
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=33.38 E-value=46 Score=30.60 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.3
Q ss_pred EEEcCcccchHHHHHHHHHHHHc
Q 023344 199 LLLDPVLATGNSANQAIQLLIEK 221 (283)
Q Consensus 199 il~Dp~iaTG~t~~~ai~~L~~~ 221 (283)
-|+||.+.||+-+.++.+.++++
T Consensus 49 ~VlDPacGsG~fL~~~~~~i~~~ 71 (311)
T PF02384_consen 49 SVLDPACGSGGFLVAAMEYIKEK 71 (311)
T ss_dssp EEEETT-TTSHHHHHHHHHHHTC
T ss_pred eeechhhhHHHHHHHHHHhhccc
Confidence 46999999999999999988654
No 210
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=32.60 E-value=33 Score=29.05 Aligned_cols=25 Identities=32% Similarity=0.650 Sum_probs=18.9
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCCCCHH
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERGRDVD 31 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~ 31 (283)
|+.||++++.++++.| + .+|||+.+
T Consensus 126 d~~i~l~~~~~~~~~R-i----~~R~r~~e 150 (193)
T cd01673 126 DLVIYLDASPETCLKR-I----KKRGRPEE 150 (193)
T ss_pred CEEEEEeCCHHHHHHH-H----HhcCcHhh
Confidence 7889999999999666 3 34676544
No 211
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=31.70 E-value=1.7e+02 Score=24.97 Aligned_cols=51 Identities=10% Similarity=0.221 Sum_probs=33.2
Q ss_pred CcEEEEEcCcccch-HHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCC
Q 023344 195 ERHVLLLDPVLATG-NSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 248 (283)
Q Consensus 195 ~~~Vil~Dp~iaTG-~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P 248 (283)
.+.++|+++.-..+ ..+..+++.+++.|+ +|.++++=...+-|++++++-.
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~~I---~v~~IgiG~~~~~L~~ia~~tg 159 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKENI---RVSVIGLSAEMHICKEICKATN 159 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHcCc---EEEEEEechHHHHHHHHHHHhC
Confidence 34677777654332 345677888999887 5777777444455788877654
No 212
>PRK13699 putative methylase; Provisional
Probab=31.19 E-value=35 Score=30.46 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=17.3
Q ss_pred EEEcCcccchHHHHHHHHH
Q 023344 199 LLLDPVLATGNSANQAIQL 217 (283)
Q Consensus 199 il~Dp~iaTG~t~~~ai~~ 217 (283)
+++||...||.|+.+|.+.
T Consensus 166 ~vlDpf~Gsgtt~~aa~~~ 184 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQS 184 (227)
T ss_pred EEEeCCCCCCHHHHHHHHc
Confidence 7999999999999999863
No 213
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=30.88 E-value=1.5e+02 Score=21.68 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=34.4
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCC
Q 023344 204 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 248 (283)
Q Consensus 204 ~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P 248 (283)
+|.+|+-..+..+-|.++|..+++|.+++ --+++..+++.+.++
T Consensus 4 iIG~G~mg~al~~~l~~~g~~~~~v~~~~-~r~~~~~~~~~~~~~ 47 (96)
T PF03807_consen 4 IIGAGNMGSALARGLLASGIKPHEVIIVS-SRSPEKAAELAKEYG 47 (96)
T ss_dssp EESTSHHHHHHHHHHHHTTS-GGEEEEEE-ESSHHHHHHHHHHCT
T ss_pred EECCCHHHHHHHHHHHHCCCCceeEEeec-cCcHHHHHHHHHhhc
Confidence 46788888888889999996556765543 678999999999997
No 214
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=30.48 E-value=1.1e+02 Score=27.83 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=36.2
Q ss_pred CCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCC
Q 023344 190 PNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 248 (283)
Q Consensus 190 P~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P 248 (283)
..++++++|+|+ .+|++..+++..|.+.|+ .+|++++- +.+..+++.+.+.
T Consensus 118 ~~~~~~k~vlVl----GaGg~a~ai~~aL~~~g~--~~V~v~~R--~~~~a~~l~~~~~ 168 (278)
T PRK00258 118 GVDLKGKRILIL----GAGGAARAVILPLLDLGV--AEITIVNR--TVERAEELAKLFG 168 (278)
T ss_pred CCCCCCCEEEEE----cCcHHHHHHHHHHHHcCC--CEEEEEeC--CHHHHHHHHHHhh
Confidence 335778888765 679999999999999997 56766653 3455555655543
No 215
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=30.26 E-value=36 Score=25.89 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCCccEEEEEEeeC---------HHHHHHHHHhCCCcEEEEE
Q 023344 213 QAIQLLIEKGVPESHIIFLNLISA---------PEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 213 ~ai~~L~~~G~~e~~I~~v~~vas---------~~gl~~l~~~~P~v~I~ta 255 (283)
.+++.|.+.|+ ++|+++=++.+ ++-++.+.+.+|++++..+
T Consensus 41 ~~l~~l~~~g~--~~ivvvP~fL~~G~h~~~DIp~~l~~~~~~~~~~~v~~~ 90 (105)
T PF01903_consen 41 EALERLVAQGA--RRIVVVPYFLFPGYHVKRDIPEALAEARERHPGIEVRVA 90 (105)
T ss_dssp HCCHHHHCCTC--SEEEEEEESSSSSHHHHCHHHHHHCHHHHCSTTEEEEE-
T ss_pred HHHHHHHHcCC--CeEEEEeeeecCccchHhHHHHHHHHHHhhCCceEEEEC
Confidence 44466666676 56666654442 4456667778888876655
No 216
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=30.23 E-value=48 Score=27.66 Aligned_cols=73 Identities=23% Similarity=0.395 Sum_probs=52.7
Q ss_pred cEEEEEcCcccchH------------------HHHHHHHHHHHcCCCCccEEEEE-EeeCHHHHHHHHHhCCCcEEEEEe
Q 023344 196 RHVLLLDPVLATGN------------------SANQAIQLLIEKGVPESHIIFLN-LISAPEGIHCVCKRFPSLKIVTSE 256 (283)
Q Consensus 196 ~~Vil~Dp~iaTG~------------------t~~~ai~~L~~~G~~e~~I~~v~-~vas~~gl~~l~~~~P~v~I~ta~ 256 (283)
..++=+||.+.||- +....++.+.++|.| +++++ +--.|+.+++|+..| +..+|+-.
T Consensus 32 ~lIVGiDPG~ttgiAildL~G~~l~l~S~R~~~~~evi~~I~~~G~P---viVAtDV~p~P~~V~Kia~~f-~A~ly~P~ 107 (138)
T PF04312_consen 32 YLIVGIDPGTTTGIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKP---VIVATDVSPPPETVKKIARSF-NAVLYTPE 107 (138)
T ss_pred CEEEEECCCceeEEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCE---EEEEecCCCCcHHHHHHHHHh-CCcccCCC
Confidence 34555788888773 456789999999986 77777 445799999999999 77888876
Q ss_pred ecCCCCCCCeeecCCC
Q 023344 257 IDVALNEEFRVIPGLG 272 (283)
Q Consensus 257 iD~~ln~~~~ivPGlG 272 (283)
=|=-.+|+..+.-+.|
T Consensus 108 ~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 108 RDLSVEEKQELAREYS 123 (138)
T ss_pred CcCCHHHHHHHHHhhC
Confidence 5555556655554443
No 217
>PRK00889 adenylylsulfate kinase; Provisional
Probab=30.17 E-value=19 Score=30.10 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=29.8
Q ss_pred EEEEeCCchhHHHHhhhhccccCC--CCHHHHH---H-----HhhhccccCCCCchHHHHHHHHHHhhhhcc
Q 023344 4 KIFVDTDADVRLARRIRRDTVERG--RDVDSVL---E-----QYADVIIPRGGDNHVAIDLIVQHIHTKLGQ 65 (283)
Q Consensus 4 ~ifv~~~~d~~l~rr~~rd~~~rg--r~~~~v~---~-----qyaD~iip~~~~~~~a~~~i~~~i~~~l~~ 65 (283)
-||+++|.++...|. .|....++ .+++.++ . ++||++++.+.. .++.+++.|.+.|..
T Consensus 103 ~v~l~~~~e~~~~R~-~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~~~~---~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 103 EVFVDAPLEVCEQRD-VKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRTDLE---SLEESVDKVLQKLEE 170 (175)
T ss_pred EEEEcCCHHHHHHhC-cccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEECCCC---CHHHHHHHHHHHHHH
Confidence 589999999776663 22211111 1122111 1 238998876532 244555555555543
No 218
>PHA01735 hypothetical protein
Probab=29.86 E-value=83 Score=23.23 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=30.2
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCc
Q 023344 204 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSL 250 (283)
Q Consensus 204 ~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v 250 (283)
.-||-+.+.+|++.||+.++. - +....+-+.++....|++
T Consensus 28 geATtaDL~AA~d~Lk~NdIt-----g--v~~~gspl~~La~~~P~l 67 (76)
T PHA01735 28 GEATTADLRAACDWLKSNDIT-----G--VAVDGSPLAKLAGLMPQL 67 (76)
T ss_pred CcccHHHHHHHHHHHHHCCCc-----e--eeCCCCHHHHHHhcCccC
Confidence 457889999999999997652 2 344555688888888864
No 219
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.81 E-value=1.2e+02 Score=30.07 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=49.3
Q ss_pred cCCCCCCCcEEEEEcCcccchHHHHHHHHHH---HHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEEEe
Q 023344 188 KLPNDISERHVLLLDPVLATGNSANQAIQLL---IEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSE 256 (283)
Q Consensus 188 ~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L---~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ta~ 256 (283)
....+.+.-.|+|+--.--+..+-.++.+.| ++.+ |...|++..+++..+ +.+.+.+|.|.++++.
T Consensus 33 ~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~-p~~~iiVtGC~aq~~--~~i~~~~p~vd~v~G~ 101 (437)
T COG0621 33 ELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKLK-PDAKIIVTGCLAQAE--EEILERAPEVDIVLGP 101 (437)
T ss_pred cccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhC-CCCEEEEeCCccccC--HHHHhhCCCceEEECC
Confidence 3334555678999998888888777766655 4556 444666666888888 9999999999998875
No 220
>PLN02962 hydroxyacylglutathione hydrolase
Probab=29.49 E-value=4.3e+02 Score=23.92 Aligned_cols=57 Identities=23% Similarity=0.436 Sum_probs=38.2
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeC------HHHHHHHHHhCCCcEEEEEeec
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA------PEGIHCVCKRFPSLKIVTSEID 258 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas------~~gl~~l~~~~P~v~I~ta~iD 258 (283)
.++..+|+||.-... ...++.|+++|.. | ..++.+ -.|...|.+++|++++|....+
T Consensus 34 ~~~~avlIDP~~~~~---~~~l~~l~~~g~~---i--~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~ 96 (251)
T PLN02962 34 PDKPALLIDPVDKTV---DRDLSLVKELGLK---L--IYAMNTHVHADHVTGTGLLKTKLPGVKSIISKAS 96 (251)
T ss_pred CCCEEEEECCCCCcH---HHHHHHHHHCCCe---e--EEEEcCCCCchhHHHHHHHHHHCCCCeEEecccc
Confidence 457899999953222 3445677787863 3 234443 5688899889999998876543
No 221
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=29.48 E-value=1.3e+02 Score=27.92 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=35.8
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeC-HHHHHHHHHhCC
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA-PEGIHCVCKRFP 248 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas-~~gl~~l~~~~P 248 (283)
++++++|+| +.+|++..+++-.|.+.|+ ++|.+++-=.. .+-.+++.+.++
T Consensus 121 ~~~~k~vlv----lGaGGaarAi~~~l~~~g~--~~i~i~nRt~~~~~ka~~la~~~~ 172 (288)
T PRK12749 121 DIKGKTMVL----LGAGGASTAIGAQGAIEGL--KEIKLFNRRDEFFDKALAFAQRVN 172 (288)
T ss_pred CcCCCEEEE----ECCcHHHHHHHHHHHHCCC--CEEEEEeCCccHHHHHHHHHHHhh
Confidence 467888875 5689998888888888998 67877774221 345666666554
No 222
>PRK09375 quinolinate synthetase; Provisional
Probab=28.77 E-value=92 Score=29.61 Aligned_cols=101 Identities=13% Similarity=0.219 Sum_probs=57.2
Q ss_pred cceeEEEecccchHHHH--------HHHHhccCceeeeEEEEecCCCC----cee-----EeccCCCCCCCcEEEEEcCc
Q 023344 142 KKLCGVSIVRSGESMEN--------ALRACCKGIKIGKILIHRDGDNG----KQL-----IYEKLPNDISERHVLLLDPV 204 (283)
Q Consensus 142 ~~i~~V~IlRaG~~m~~--------~l~~~~p~a~~G~i~i~R~~~t~----~~~-----~y~~lP~~i~~~~Vil~Dp~ 204 (283)
++-+++|=++||-+|.+ .+++-.|++.+ ..+-|..-. ..+ ...+.=..+.....||+=|.
T Consensus 89 ~k~VllP~~~AgC~mAd~~~~~~i~~lk~~~p~a~v---VaYvNssaeVKA~aD~~cTSSnAl~iv~~~~~~~~IlF~PD 165 (319)
T PRK09375 89 EKTVLLPDLEAGCSLADMCPAEEFRAFKEAHPDATV---VTYVNTSAAVKARADIVCTSSNAVKIVEALPQGKKILFLPD 165 (319)
T ss_pred CCeEECCCCCCCCcccccCCHHHHHHHHHHCCCCEE---EEEeCCCHHHHHhCCeEEeCHHHHHHHhccCCCCeEEEeCc
Confidence 67788999999999974 35556666543 333332110 001 01111112222234555566
Q ss_pred ccchHHHHHHHHHHHHcCCCCccEEEEE---E---eeCHHHHHHHHHhCCCcEEEE
Q 023344 205 LATGNSANQAIQLLIEKGVPESHIIFLN---L---ISAPEGIHCVCKRFPSLKIVT 254 (283)
Q Consensus 205 iaTG~t~~~ai~~L~~~G~~e~~I~~v~---~---vas~~gl~~l~~~~P~v~I~t 254 (283)
=.-|.++... +++++++-. . -.+++-++++.++||+..|++
T Consensus 166 ~~Lg~~v~~l---------~~k~vilw~G~C~vH~~~~~e~i~~~r~~~Pda~Vv~ 212 (319)
T PRK09375 166 QHLGRYVAKQ---------TGADIILWPGHCIVHEEFTAEDLERLRAEYPDAKVLV 212 (319)
T ss_pred hHHHHHHHHc---------CCCEEEccCCcchhccCcCHHHHHHHHHHCcCCeEEE
Confidence 5666666331 445554433 1 237899999999999988876
No 223
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=28.75 E-value=1.3e+02 Score=28.62 Aligned_cols=49 Identities=8% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEeeC---------------HHHHHHHHHhCCCcEEEE-EeecC
Q 023344 209 NSANQAIQLLIEKGVPESHIIFLNLISA---------------PEGIHCVCKRFPSLKIVT-SEIDV 259 (283)
Q Consensus 209 ~t~~~ai~~L~~~G~~e~~I~~v~~vas---------------~~gl~~l~~~~P~v~I~t-a~iD~ 259 (283)
..+.+.++.+.+.|+ +.|.+-.+... +.+++.++++||++-|+| .|+|+
T Consensus 61 d~l~~~~~~~~~~Gi--~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~ 125 (322)
T PRK13384 61 SALADEIERLYALGI--RYVMPFGISHHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCE 125 (322)
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCCCCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeeccc
Confidence 467788889999999 56665554332 678999999999988776 34455
No 224
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=28.70 E-value=84 Score=27.66 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHH
Q 023344 208 GNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 245 (283)
Q Consensus 208 G~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~ 245 (283)
...+..+++.++++|.+ ++|.+++.-++|..++.+..
T Consensus 192 d~~a~~~~~~l~~~g~p-~di~vig~~~~p~~~~~l~~ 228 (268)
T cd06306 192 AVAAEAAVGILRQRGLT-DQIKIVSTYLSHAVYRGLKR 228 (268)
T ss_pred chhhhHHHHHHHhcCCC-CCeEEEecCCCHHHHHHHHc
Confidence 55566788999999985 79999999999998888863
No 225
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=28.68 E-value=40 Score=31.45 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=19.9
Q ss_pred CCeEEEEeCCchhHHHHhhhhccc
Q 023344 1 MNMKIFVDTDADVRLARRIRRDTV 24 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~rd~~ 24 (283)
+|++||||+|.+.--.|-+.|-..
T Consensus 211 fDfSIyvDa~~~~le~wyi~Rfl~ 234 (283)
T COG1072 211 FDFSIYVDADEELLEERYIERFLK 234 (283)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHh
Confidence 699999999999777777777765
No 226
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=28.45 E-value=2.1e+02 Score=23.42 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCCccEEEEEEee--CHHHHHHHHHh----CCCcEEEE
Q 023344 211 ANQAIQLLIEKGVPESHIIFLNLIS--APEGIHCVCKR----FPSLKIVT 254 (283)
Q Consensus 211 ~~~ai~~L~~~G~~e~~I~~v~~va--s~~gl~~l~~~----~P~v~I~t 254 (283)
+..++..|.++|.+...|++++-=. ..+|.+.+... ||..+|+.
T Consensus 7 vTEtl~aL~~~g~~i~ev~lI~T~~~~v~~~~~~l~~~l~~~~~~~~i~~ 56 (124)
T TIGR03642 7 ITEAIDYLKKKGEPISDVILIYTKDPYVLSALRALKDSLLKKFYKAEVHK 56 (124)
T ss_pred HHHHHHHHHhcCCCCCeEEEEEcCCHHHHHHHHHHHHHhHHhcCCcEEEE
Confidence 3478899999999888888887322 12366666654 55556554
No 227
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=28.41 E-value=1.1e+02 Score=28.61 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=29.0
Q ss_pred EEEEeCCchhHHHHhhhhcccc----CCCCHHH-HH---------HHhhhccccCCCCchHHHHHHHHHHhhhh
Q 023344 4 KIFVDTDADVRLARRIRRDTVE----RGRDVDS-VL---------EQYADVIIPRGGDNHVAIDLIVQHIHTKL 63 (283)
Q Consensus 4 ~ifv~~~~d~~l~rr~~rd~~~----rgr~~~~-v~---------~qyaD~iip~~~~~~~a~~~i~~~i~~~l 63 (283)
.||++++.++.+. |+...-.. ++.++.. +. +++||++|..+..+ .+.+.+.|.+.+
T Consensus 89 iI~L~a~~e~L~~-Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDTs~ls---~~el~e~I~~~l 158 (288)
T PRK05416 89 VLFLDASDEVLIR-RYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDTSELS---VHQLRERIRERF 158 (288)
T ss_pred EEEEECCHHHHHH-HHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEECCCCC---HHHHHHHHHHHH
Confidence 4899999997664 44321111 1223322 22 12299999876543 234444444444
No 228
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=28.30 E-value=2.6e+02 Score=28.40 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=72.2
Q ss_pred HhHhhh-cCCC-ChhhhHhhHHHHHHHHHHHHhCCCCCeeEEEeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhc
Q 023344 87 MHTLIR-DRGI-SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACC 164 (283)
Q Consensus 87 llt~LR-d~~T-~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~TP~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~ 164 (283)
+|..+. |..| ...+|-+-.+.|..++-+ ..+|+-...+...-+....+. -.+..++- +
T Consensus 77 ~~N~~g~Da~~lGNHEFd~G~~~l~~~~~~---~~fp~l~aNv~~~~~~~~~~~--~~p~~i~~--~------------- 136 (550)
T TIGR01530 77 LMNAAGFDFFTLGNHEFDAGNEGLKEFLEP---LEIPVLSANVIPDAASILHGK--WKPSAIFE--R------------- 136 (550)
T ss_pred HHhccCCCEEEeccccccCCHHHHHHHHHh---CCCCEEEEeeecCCCcccccC--cCceEEEE--E-------------
Confidence 444444 4443 566888888887766543 356765444432111100000 12222222 1
Q ss_pred cCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHH
Q 023344 165 KGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 244 (283)
Q Consensus 165 p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~ 244 (283)
...++|.|++.-.+.+. ...-| ++.+-+.||. .++.+.++.|+++|+ .-|++++ -..-+.-..|+
T Consensus 137 ~g~kIgiiGl~~~~~~~----~~~~~----~~~~~f~d~~----~~~~~~v~~Lk~~g~--D~II~ls-H~g~~~d~~la 201 (550)
T TIGR01530 137 AGEKIAIIGLDTVKKTV----ESSSP----GKDIKFIDEI----AAAQIAANALKQQGI--NKIILLS-HAGFEKNCEIA 201 (550)
T ss_pred CCeEEEEEEeecCcccc----cccCC----CCceEECCHH----HHHHHHHHHHHhCCC--CEEEEEe-cCCcHHHHHHH
Confidence 34589999985321110 01111 2345566764 457788999999898 3344444 34444446788
Q ss_pred HhCCCcEEEEEe
Q 023344 245 KRFPSLKIVTSE 256 (283)
Q Consensus 245 ~~~P~v~I~ta~ 256 (283)
+..|+|.++.+.
T Consensus 202 ~~~~~iD~IigG 213 (550)
T TIGR01530 202 QKINDIDVIVSG 213 (550)
T ss_pred hcCCCCCEEEeC
Confidence 999999876665
No 229
>PRK07933 thymidylate kinase; Validated
Probab=28.09 E-value=1e+02 Score=27.05 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=17.4
Q ss_pred CeEEEEeCCchhHHHHhhhh
Q 023344 2 NMKIFVDTDADVRLARRIRR 21 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~r 21 (283)
|+.||+|.|.++.+.|.-.|
T Consensus 134 Dl~i~Ldv~~e~a~~Ri~~R 153 (213)
T PRK07933 134 DLQVLLDVPVELAAERARRR 153 (213)
T ss_pred CEEEEecCCHHHHHHHHHhh
Confidence 89999999999998886555
No 230
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=28.05 E-value=1.5e+02 Score=28.28 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEee-C----------------HHHHHHHHHhCCCcEEEE-EeecCC
Q 023344 208 GNSANQAIQLLIEKGVPESHIIFLNLIS-A----------------PEGIHCVCKRFPSLKIVT-SEIDVA 260 (283)
Q Consensus 208 G~t~~~ai~~L~~~G~~e~~I~~v~~va-s----------------~~gl~~l~~~~P~v~I~t-a~iD~~ 260 (283)
=..+.+.++.+.+.|+ +.+.+-.++. . +.+++.+++.||++-|+| .|+++-
T Consensus 53 ~d~l~~~v~~~~~~Gi--~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~Y 121 (320)
T cd04823 53 IDELLKEAEEAVDLGI--PAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPY 121 (320)
T ss_pred HHHHHHHHHHHHHcCC--CEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 3678888999999999 6777777642 1 678999999999988776 345553
No 231
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=27.85 E-value=1.1e+02 Score=29.37 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 023344 191 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 232 (283)
Q Consensus 191 ~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~ 232 (283)
.++++++|+++ .+|.....+++.|.++|+ ++|++++
T Consensus 170 ~~l~~k~vLvI----GaGem~~l~a~~L~~~g~--~~i~v~n 205 (338)
T PRK00676 170 QKSKKASLLFI----GYSEINRKVAYYLQRQGY--SRITFCS 205 (338)
T ss_pred CCccCCEEEEE----cccHHHHHHHHHHHHcCC--CEEEEEc
Confidence 47899999974 689999999999999998 6788777
No 232
>PRK13948 shikimate kinase; Provisional
Probab=27.70 E-value=2e+02 Score=24.72 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=30.2
Q ss_pred eEEEEeCCchhHHHHhhhhccc---cCCCCHHHHHHHh---------hhccccCCCCc-hHHHHHHHHHHhh
Q 023344 3 MKIFVDTDADVRLARRIRRDTV---ERGRDVDSVLEQY---------ADVIIPRGGDN-HVAIDLIVQHIHT 61 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~---~rgr~~~~v~~qy---------aD~iip~~~~~-~~a~~~i~~~i~~ 61 (283)
..||++++.++- .+|+.++-+ ..+...+.+.+.| ||++|+..... ...++.|.+.+..
T Consensus 105 ~vV~L~~~~e~l-~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 105 PVVVLWASPETI-YERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQATIHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred eEEEEECCHHHH-HHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999998854 445654311 1111223333333 99999864432 2334444444443
No 233
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=27.62 E-value=1.5e+02 Score=23.56 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=40.2
Q ss_pred EEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEE
Q 023344 197 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIV 253 (283)
Q Consensus 197 ~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ 253 (283)
-++|+=+-=.+=.=+.+=-+.|++.|+ +-+++=+.+.++++++.+..|++.+.
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~A----vGlVVnV~t~~~l~~Lr~lapgl~l~ 78 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGA----VGLVVNVETAAALQRLRALAPGLPLL 78 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCC----eEEEEecCCHHHHHHHHHHcCCCccc
Confidence 566665444555556667778888887 77888899999999999999877643
No 234
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=27.28 E-value=1.7e+02 Score=25.65 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=33.2
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHh
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR 246 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~ 246 (283)
+++|++|+++ ..|......++.|.+.|+ +|++++.=.+ +.++.+.+.
T Consensus 6 ~l~gk~vlVv----GgG~va~rk~~~Ll~~ga---~VtVvsp~~~-~~l~~l~~~ 52 (205)
T TIGR01470 6 NLEGRAVLVV----GGGDVALRKARLLLKAGA---QLRVIAEELE-SELTLLAEQ 52 (205)
T ss_pred EcCCCeEEEE----CcCHHHHHHHHHHHHCCC---EEEEEcCCCC-HHHHHHHHc
Confidence 3678888864 678888888999999997 5776665333 456666543
No 235
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=27.24 E-value=1.5e+02 Score=28.19 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEeeC------------------HHHHHHHHHhCCCcEEEE-EeecC
Q 023344 209 NSANQAIQLLIEKGVPESHIIFLNLISA------------------PEGIHCVCKRFPSLKIVT-SEIDV 259 (283)
Q Consensus 209 ~t~~~ai~~L~~~G~~e~~I~~v~~vas------------------~~gl~~l~~~~P~v~I~t-a~iD~ 259 (283)
..+.+.++.+.+.|+ +.|.+-.+... +++++.++++||++-|+| .|+++
T Consensus 51 d~l~~~~~~~~~~Gi--~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~ 118 (320)
T cd04824 51 NRLEEFLRPLVAKGL--RSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCLCE 118 (320)
T ss_pred HHHHHHHHHHHHCCC--CEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccC
Confidence 467788889999999 57777766421 678999999999988776 34555
No 236
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=27.24 E-value=93 Score=28.79 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHH
Q 023344 193 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 245 (283)
Q Consensus 193 i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~ 245 (283)
.++++|+ ++.+||+..+++-.|.+.|+ ++|.+++- +++-.+.+.+
T Consensus 125 ~~~k~vl----ilGaGGaarAi~~aL~~~g~--~~i~i~nR--~~~ka~~La~ 169 (283)
T PRK14027 125 AKLDSVV----QVGAGGVGNAVAYALVTHGV--QKLQVADL--DTSRAQALAD 169 (283)
T ss_pred cCCCeEE----EECCcHHHHHHHHHHHHCCC--CEEEEEcC--CHHHHHHHHH
Confidence 4577886 46789999999999999999 67877763 2333344544
No 237
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=27.10 E-value=1.5e+02 Score=24.82 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=40.2
Q ss_pred cEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEE
Q 023344 196 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 254 (283)
Q Consensus 196 ~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~t 254 (283)
.-++|+=+-=.+=.=+.+=.+.|++.|+ +-+|+=+.+.+++++|.+..|.+.+.=
T Consensus 63 ~plFlVGdD~~S~~WL~~~~~~L~~l~A----vGlVVNV~t~~~L~~Lr~lapgl~l~P 117 (142)
T PF11072_consen 63 QPLFLVGDDPLSRQWLQQNAEELKQLGA----VGLVVNVATEAALQRLRQLAPGLPLLP 117 (142)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHCCC----eEEEEecCCHHHHHHHHHHcCCCeecC
Confidence 4566664444444555666677888887 677778899999999999999887543
No 238
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=27.01 E-value=1.5e+02 Score=27.49 Aligned_cols=80 Identities=13% Similarity=0.233 Sum_probs=52.3
Q ss_pred cchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 023344 152 SGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231 (283)
Q Consensus 152 aG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v 231 (283)
+|+.-+..+++.+|+...=+++=. .+.|-..+...-| =.-...+++.|+++++ +-++++
T Consensus 16 GGLsVlrei~~~LP~e~~iY~~D~-----------a~~PYG~ks~e~I--------~~~~~~i~~~l~~~~i--k~lVIA 74 (269)
T COG0796 16 GGLSVLREIRRQLPDEDIIYVGDT-----------ARFPYGEKSEEEI--------RERTLEIVDFLLERGI--KALVIA 74 (269)
T ss_pred CcHHHHHHHHHHCCCCcEEEEecC-----------CCCCCCCCCHHHH--------HHHHHHHHHHHHHcCC--CEEEEe
Confidence 577788899999999887221111 3555333221100 1233467788888886 567777
Q ss_pred EEeeCHHHHHHHHHhCCCcEEE
Q 023344 232 NLISAPEGIHCVCKRFPSLKIV 253 (283)
Q Consensus 232 ~~vas~~gl~~l~~~~P~v~I~ 253 (283)
|==||.-.++.|.++| ++.|+
T Consensus 75 CNTASa~al~~LR~~~-~iPVv 95 (269)
T COG0796 75 CNTASAVALEDLREKF-DIPVV 95 (269)
T ss_pred cchHHHHHHHHHHHhC-CCCEE
Confidence 7788899999999999 55443
No 239
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=26.53 E-value=1e+02 Score=28.69 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHH
Q 023344 206 ATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 245 (283)
Q Consensus 206 aTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~ 245 (283)
+++..+..+++.++++|.+ ++|.+++.-.+|..++.+.+
T Consensus 237 ~~d~~A~ga~~al~~~g~~-~di~Vvg~~~~p~~~~~i~~ 275 (343)
T PRK10936 237 GSAVAAEAAIGELRGRNLT-DKIKLVSFYLSHQVYRGLKR 275 (343)
T ss_pred eCCHHHHHHHHHHHhcCCC-CCeEEEEeCCCHHHHHHHHc
Confidence 3455677788999999986 78999999999999999875
No 240
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=26.44 E-value=91 Score=25.58 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=17.6
Q ss_pred CeEEEEeCCchhHHHHhhhhccccCCCCHH
Q 023344 2 NMKIFVDTDADVRLARRIRRDTVERGRDVD 31 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~~~rgr~~~ 31 (283)
|+.||++++.++++.|= +.|||+.|
T Consensus 69 dl~IYL~~~~e~~~~RI-----~kRgR~~E 93 (146)
T PF01712_consen 69 DLIIYLDASPETCLERI-----KKRGREEE 93 (146)
T ss_dssp SEEEEEE--HHHHHHHH-----HHCTTGGG
T ss_pred CeEEEEeCCHHHHHHHH-----HHhCCchh
Confidence 78999999999997753 45666666
No 241
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=26.15 E-value=79 Score=24.27 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 233 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~ 233 (283)
+++|++|++ +..|..+..-++.|.+.|+ +|++++.
T Consensus 4 ~l~~~~vlV----vGgG~va~~k~~~Ll~~gA---~v~vis~ 38 (103)
T PF13241_consen 4 DLKGKRVLV----VGGGPVAARKARLLLEAGA---KVTVISP 38 (103)
T ss_dssp --TT-EEEE----EEESHHHHHHHHHHCCCTB---EEEEEES
T ss_pred EcCCCEEEE----ECCCHHHHHHHHHHHhCCC---EEEEECC
Confidence 467888887 5779999999999999996 6776664
No 242
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=25.98 E-value=1.3e+02 Score=25.46 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=26.9
Q ss_pred CCCCcEEEEE--cCcccch-------------HHHHHHHHHHHHcCCCCccEEEE
Q 023344 192 DISERHVLLL--DPVLATG-------------NSANQAIQLLIEKGVPESHIIFL 231 (283)
Q Consensus 192 ~i~~~~Vil~--Dp~iaTG-------------~t~~~ai~~L~~~G~~e~~I~~v 231 (283)
|++||.|+++ +|..+++ ++...=.+.+.++|+ .=++++
T Consensus 47 DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA--~gvi~v 99 (157)
T cd04821 47 DVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGA--AGALIV 99 (157)
T ss_pred CcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCC--eEEEEE
Confidence 6899999999 8866653 234456778889999 345444
No 243
>PRK13808 adenylate kinase; Provisional
Probab=25.91 E-value=2.1e+02 Score=27.31 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=17.5
Q ss_pred CCeEEEEeCCchhHHHHhhhh
Q 023344 1 MNMKIFVDTDADVRLARRIRR 21 (283)
Q Consensus 1 ~d~~ifv~~~~d~~l~rr~~r 21 (283)
.|+.||+|.|.++.+.|-..|
T Consensus 107 PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 107 LDAVVELRVNEGALLARVETR 127 (333)
T ss_pred cCeEEEEECCHHHHHHHHHcC
Confidence 378999999999888877665
No 244
>PRK12829 short chain dehydrogenase; Provisional
Probab=25.76 E-value=3.3e+02 Score=23.55 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=36.6
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCc--EEEEE
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSL--KIVTS 255 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v--~I~ta 255 (283)
.+++++++|.- +||+--...++.|.++|. +| +++.-+++.++.+.+..++. .++.+
T Consensus 8 ~~~~~~vlItG---a~g~iG~~~a~~L~~~g~---~V--~~~~r~~~~~~~~~~~~~~~~~~~~~~ 65 (264)
T PRK12829 8 PLDGLRVLVTG---GASGIGRAIAEAFAEAGA---RV--HVCDVSEAALAATAARLPGAKVTATVA 65 (264)
T ss_pred ccCCCEEEEeC---CCCcHHHHHHHHHHHCCC---EE--EEEeCCHHHHHHHHHHHhcCceEEEEc
Confidence 35678888876 466666777888888886 34 33334566777777766654 44443
No 245
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=25.73 E-value=1e+02 Score=24.90 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=48.1
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE-EeeCHHHHHHHHHhCCCcEEEEEeecC
Q 023344 195 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN-LISAPEGIHCVCKRFPSLKIVTSEIDV 259 (283)
Q Consensus 195 ~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~-~vas~~gl~~l~~~~P~v~I~ta~iD~ 259 (283)
...+++-+--..|...+..+.+.+.++|. ++|++|| -.-.+-+..-+.+.+|++.++....+.
T Consensus 67 ~~~I~~e~~s~~T~ena~~~~~~~~~~~~--~~i~lVTs~~H~~Ra~~~~~~~~~~~~~~~~p~~~ 130 (150)
T cd06259 67 AEAILLEDRSTNTYENARFSAELLRERGI--RSVLLVTSAYHMPRALLIFRKAGLDVEVVPAPTDF 130 (150)
T ss_pred HHHeeecCCCCCHHHHHHHHHHHHHhcCC--CeEEEECCHHHHHHHHHHHHHcCCCCcEEecCcch
Confidence 34566767777899999999999999998 6787777 455677788888888876666555544
No 246
>PRK13974 thymidylate kinase; Provisional
Probab=25.72 E-value=1.2e+02 Score=26.40 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=17.6
Q ss_pred CeEEEEeCCchhHHHHhhhh
Q 023344 2 NMKIFVDTDADVRLARRIRR 21 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~r 21 (283)
|+.||+|+|.++.+.|...|
T Consensus 136 d~~i~ld~~~~~~~~R~~~R 155 (212)
T PRK13974 136 DLTFFLEISVEESIRRRKNR 155 (212)
T ss_pred CEEEEEeCCHHHHHHHHHhc
Confidence 78899999999999987665
No 247
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=25.57 E-value=3.1e+02 Score=24.46 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=43.7
Q ss_pred CceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHH-HHHHHHcCCCCccEEEEEEeeCHH------
Q 023344 166 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQA-IQLLIEKGVPESHIIFLNLISAPE------ 238 (283)
Q Consensus 166 ~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~a-i~~L~~~G~~e~~I~~v~~vas~~------ 238 (283)
..++|.+++..... -+...|..+++ +-+.||. .++.+. +..+++.|+ +++++..-...+
T Consensus 125 G~kIgviG~~~~~~-----~~~~~~~~~~~--~~~~d~~----~~~~~~~v~~l~~~~~---D~iIvl~H~G~~~~~~~~ 190 (257)
T cd07408 125 GVKVGVIGLTTPET-----ATKTHPKNVKD--VTFEDPI----EEAKKVIVAALKAKGA---DVIVALGHLGVDRTSSPW 190 (257)
T ss_pred CCEEEEEeecCcCc-----ccccCccccCC--cEEecHH----HHHHHHHHHHHHhCCC---CEEEEEeCcCcCCCCCCc
Confidence 67888888853211 11223333322 4455664 345555 788888887 344443333221
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 023344 239 GIHCVCKRFPSLKIVTSE 256 (283)
Q Consensus 239 gl~~l~~~~P~v~I~ta~ 256 (283)
.-.++++++|++.++.+.
T Consensus 191 ~~~~la~~~~giDvIigG 208 (257)
T cd07408 191 TSTELAANVTGIDLIIDG 208 (257)
T ss_pred cHHHHHHhCCCceEEEeC
Confidence 126788889999877765
No 248
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=25.57 E-value=98 Score=22.88 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCcEEEEEcCcccchHH--HHHHHHHHHHcCCCCccEEE
Q 023344 194 SERHVLLLDPVLATGNS--ANQAIQLLIEKGVPESHIIF 230 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t--~~~ai~~L~~~G~~e~~I~~ 230 (283)
+++.|+++. .+|.. +..|.+.|++.|. +++..
T Consensus 49 ~~~~ivl~c---~~G~~~~s~~aa~~L~~~G~--~~v~~ 82 (92)
T cd01532 49 RDTPIVVYG---EGGGEDLAPRAARRLSELGY--TDVAL 82 (92)
T ss_pred CCCeEEEEe---CCCCchHHHHHHHHHHHcCc--cCEEE
Confidence 356677774 45643 6788899999998 56653
No 249
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=25.53 E-value=1.9e+02 Score=25.45 Aligned_cols=53 Identities=26% Similarity=0.391 Sum_probs=35.8
Q ss_pred eEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh-------------hhccccCCCCchHHHHHHHHHHh
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY-------------ADVIIPRGGDNHVAIDLIVQHIH 60 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy-------------aD~iip~~~~~~~a~~~i~~~i~ 60 (283)
..||+..|+-..|.||+.+ ||-+-++++.+- .|.+|-|. +.+.|+..+..-|.
T Consensus 116 v~IFi~pPs~eeL~~RL~~----Rgtds~e~I~~Rl~~a~~Ei~~~~~fdyvivNd-d~e~a~~~l~~ii~ 181 (191)
T COG0194 116 VSIFILPPSLEELERRLKG----RGTDSEEVIARRLENAKKEISHADEFDYVIVND-DLEKALEELKSIIL 181 (191)
T ss_pred EEEEEcCCCHHHHHHHHHc----cCCCCHHHHHHHHHHHHHHHHHHHhCCEEEECc-cHHHHHHHHHHHHH
Confidence 4799999999999999975 565556555333 77777653 34456655554443
No 250
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=25.44 E-value=2.5e+02 Score=23.11 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=17.5
Q ss_pred CeEEEEeCCchhHHHHhhhhc
Q 023344 2 NMKIFVDTDADVRLARRIRRD 22 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd 22 (283)
|+.||+++|.++++.|...|.
T Consensus 108 ~~vi~l~~~~~~~~~Rl~~R~ 128 (188)
T TIGR01360 108 TLVLYFDCSEDTMVKRLLKRA 128 (188)
T ss_pred CEEEEEECCHHHHHHHHHccc
Confidence 678999999999888777665
No 251
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=25.22 E-value=1.4e+02 Score=22.23 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEE
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 229 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~ 229 (283)
+++.++++. .+|.....|...|+++|. ++++
T Consensus 60 ~~~~ivvyC---~~G~rs~~a~~~L~~~G~--~~v~ 90 (101)
T cd01518 60 KGKKVLMYC---TGGIRCEKASAYLKERGF--KNVY 90 (101)
T ss_pred CCCEEEEEC---CCchhHHHHHHHHHHhCC--ccee
Confidence 467777775 578888888899999998 4554
No 252
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=25.17 E-value=1.7e+02 Score=27.79 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEeeC---------------HHHHHHHHHhCCCcEEEE-EeecC
Q 023344 209 NSANQAIQLLIEKGVPESHIIFLNLISA---------------PEGIHCVCKRFPSLKIVT-SEIDV 259 (283)
Q Consensus 209 ~t~~~ai~~L~~~G~~e~~I~~v~~vas---------------~~gl~~l~~~~P~v~I~t-a~iD~ 259 (283)
..+.+.++.+.+.|+ +.|.+-.+-.. +.+++.++++||++-|+| .|+|+
T Consensus 51 d~l~~~~~~~~~~Gi--~~v~LFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~ 115 (314)
T cd00384 51 DSLVEEAEELADLGI--RAVILFGIPEHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCE 115 (314)
T ss_pred HHHHHHHHHHHHCCC--CEEEEECCCCCCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccC
Confidence 578888999999999 56766665321 678999999999988777 35555
No 253
>PLN00203 glutamyl-tRNA reductase
Probab=25.10 E-value=2.8e+02 Score=28.08 Aligned_cols=56 Identities=23% Similarity=0.525 Sum_probs=40.9
Q ss_pred ccCCC-CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCc
Q 023344 187 EKLPN-DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSL 250 (283)
Q Consensus 187 ~~lP~-~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v 250 (283)
..+|. ++.+++|++ +.+|.....+++.|...|+ ++|++++ -+++..+.+.+.++++
T Consensus 257 ~~~~~~~l~~kkVlV----IGAG~mG~~~a~~L~~~G~--~~V~V~n--Rs~era~~La~~~~g~ 313 (519)
T PLN00203 257 MKLPESSHASARVLV----IGAGKMGKLLVKHLVSKGC--TKMVVVN--RSEERVAALREEFPDV 313 (519)
T ss_pred HhcCCCCCCCCEEEE----EeCHHHHHHHHHHHHhCCC--CeEEEEe--CCHHHHHHHHHHhCCC
Confidence 34553 488899887 4789999999999999997 5676654 3456677777766644
No 254
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.08 E-value=70 Score=33.18 Aligned_cols=93 Identities=24% Similarity=0.299 Sum_probs=54.1
Q ss_pred CCchhHHHHh---hhhccccCCCCHHHHHHHhhhccccCCCCchHH-----------------HHHHHHHHhhhhccccc
Q 023344 9 TDADVRLARR---IRRDTVERGRDVDSVLEQYADVIIPRGGDNHVA-----------------IDLIVQHIHTKLGQHDL 68 (283)
Q Consensus 9 ~~~d~~l~rr---~~rd~~~rgr~~~~v~~qyaD~iip~~~~~~~a-----------------~~~i~~~i~~~l~~~~~ 68 (283)
++.|+.+-.| +.|.+..+.|-..+|-+ ||+||-|-.+..|| .+.+..+|++.-++++
T Consensus 525 sEGDPeIKaRRRqlqREmar~rRMm~~Vpk--ADVVITNPTHyAVALKYdp~~~~APiVVAKG~D~lAlrIReiAeE~g- 601 (646)
T PRK12773 525 SDGDRSLQARRRQLARDMMNKRKMLAKVPE--ADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENG- 601 (646)
T ss_pred ccCCHHHHHHHHHHHHHHHhhcchhhcCCC--CcEEEECCCceEEEEEECCCCCCCCEEEEEeCcHHHHHHHHHHHHcC-
Confidence 4445555433 44555533333333321 99999876655443 4555666666655554
Q ss_pred ccCCCceeeecCchHHHHHhHhh-hcCCCChhhhHhhHHHHHH
Q 023344 69 CKIYPNVYVIQSTFQIRGMHTLI-RDRGISKHDFVFYSDRLIR 110 (283)
Q Consensus 69 ~~~~~~v~vl~~~~~l~~llt~L-Rd~~T~~~~Fr~~~~rl~~ 110 (283)
|-+++++|+++.+.... -++..|.+.|..-++-|..
T Consensus 602 ------VPIVENpPLARALY~~veVGq~IP~eLYeAVAeILa~ 638 (646)
T PRK12773 602 ------VPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSR 638 (646)
T ss_pred ------CcEEECHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHH
Confidence 66888888888887433 3666777766655444433
No 255
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=24.77 E-value=1.3e+02 Score=22.77 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=22.2
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCC
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVP 224 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~ 224 (283)
+++.++++ +.+|.....|...|++.|.+
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~ 92 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLP 92 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCC
Confidence 35667776 67888888899999999983
No 256
>KOG2299 consensus Ribonuclease HI [Replication, recombination and repair]
Probab=24.75 E-value=1.8e+02 Score=27.08 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEEEee
Q 023344 209 NSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEI 257 (283)
Q Consensus 209 ~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ta~i 257 (283)
.|++..|+...++|+.-..|++=++=-...-=++|.+.||.+++.++.-
T Consensus 123 dsam~LI~~v~~~gvnvteiyVDTVGpp~~Yq~kLek~FP~~k~tV~kK 171 (301)
T KOG2299|consen 123 DSAMGLIDEVLDQGVNVTEIYVDTVGPPAKYQEKLEKRFPGIKFTVTKK 171 (301)
T ss_pred HHHHHHHHHHHHhCCceEEEEEecCCChHHHHHHHHhhCCCeEEEEeec
Confidence 4666677788888985455655555555556788999999999877643
No 257
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=24.49 E-value=2.1e+02 Score=27.31 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEee-----------------CHHHHHHHHHhCCCcEEEE-EeecC
Q 023344 208 GNSANQAIQLLIEKGVPESHIIFLNLIS-----------------APEGIHCVCKRFPSLKIVT-SEIDV 259 (283)
Q Consensus 208 G~t~~~ai~~L~~~G~~e~~I~~v~~va-----------------s~~gl~~l~~~~P~v~I~t-a~iD~ 259 (283)
=..+.+.++.+.+.|+ +.|.+-.++. -+.+++.|+++||++-|+| .|+|+
T Consensus 56 id~l~~~v~~~~~~GI--~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~ 123 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGI--RAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLCE 123 (324)
T ss_dssp HHHHHHHHHHHHHTT----EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-STT
T ss_pred HHHHHHHHHHHHHCCC--CEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEeccccc
Confidence 3678888999999999 5777777632 2578999999999998877 35555
No 258
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=24.24 E-value=1e+02 Score=30.16 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=36.4
Q ss_pred CCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCC
Q 023344 191 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 248 (283)
Q Consensus 191 ~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P 248 (283)
.++++++|++ +.+|+....++..|.++|+ ++|++++= +.+-.+.+.+.|+
T Consensus 177 ~~l~~kkvlv----iGaG~~a~~va~~L~~~g~--~~I~V~nR--t~~ra~~La~~~~ 226 (414)
T PRK13940 177 DNISSKNVLI----IGAGQTGELLFRHVTALAP--KQIMLANR--TIEKAQKITSAFR 226 (414)
T ss_pred cCccCCEEEE----EcCcHHHHHHHHHHHHcCC--CEEEEECC--CHHHHHHHHHHhc
Confidence 4578888885 6789999999999999998 56766653 2334455555554
No 259
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=24.05 E-value=1.7e+02 Score=21.68 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=37.9
Q ss_pred EEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhC----CCcEEEEEeec
Q 023344 200 LLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF----PSLKIVTSEID 258 (283)
Q Consensus 200 l~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~----P~v~I~ta~iD 258 (283)
|+|..+.||....+..+.+ +.|. +..+.++=.+++.++...+.+ ++++.+.+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~---~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~ 59 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGP---SSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADAR 59 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTT
T ss_pred CEEeecCCcHHHHHHHHHh-hhcc---cceEEEEECCHHHHHHHHHhchhcCCceEEEECCHh
Confidence 5788899999999888887 5563 356667777889999888888 78888777653
No 260
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=24.00 E-value=2e+02 Score=26.57 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEEE
Q 023344 207 TGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 207 TG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ta 255 (283)
+-.....+++.+.+.|. ++++++-..-.+.+.++++.||+++.+..
T Consensus 46 ~~~~~~~~~~~~~~~g~---dlIi~~g~~~~~~~~~vA~~yPd~~F~~~ 91 (306)
T PF02608_consen 46 TDADYEEAIRQLADQGY---DLIIGHGFEYSDALQEVAKEYPDTKFIII 91 (306)
T ss_dssp TCHHHHHHHHHHHHTT----SEEEEESGGGHHHHHHHHTC-TTSEEEEE
T ss_pred cHHHHHHHHHHHHHcCC---CEEEEccHHHHHHHHHHHHHCCCCEEEEE
Confidence 67788899999999997 68888777778999999999999986553
No 261
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=23.70 E-value=1.4e+02 Score=22.31 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=24.5
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEE
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIF 230 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~ 230 (283)
+++.|++++ .+|.....+...|+..|. +++..
T Consensus 65 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~--~~v~~ 96 (106)
T cd01519 65 KDKELIFYC---KAGVRSKAAAELARSLGY--ENVGN 96 (106)
T ss_pred CCCeEEEEC---CCcHHHHHHHHHHHHcCC--cccee
Confidence 467788875 568888889999999998 56543
No 262
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=23.55 E-value=2e+02 Score=27.44 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEeeC---------------HHHHHHHHHhCCCcEEEE-EeecC
Q 023344 209 NSANQAIQLLIEKGVPESHIIFLNLISA---------------PEGIHCVCKRFPSLKIVT-SEIDV 259 (283)
Q Consensus 209 ~t~~~ai~~L~~~G~~e~~I~~v~~vas---------------~~gl~~l~~~~P~v~I~t-a~iD~ 259 (283)
..+.+.++.+.+.|+ +.|.+-.+-.. +.+++.++++||++-|+| .|+|+
T Consensus 59 d~l~~~v~~~~~~Gi--~av~LFgv~~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~ 123 (323)
T PRK09283 59 DLLVKEAEEAVELGI--PAVALFGVPELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDE 123 (323)
T ss_pred HHHHHHHHHHHHCCC--CEEEEeCcCCCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccC
Confidence 457788888999999 56666555222 678999999999988777 34555
No 263
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=23.54 E-value=2e+02 Score=25.79 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=43.3
Q ss_pred CceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHH
Q 023344 166 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 245 (283)
Q Consensus 166 ~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~ 245 (283)
..++|.+++--... ...+|... ..+-+.||. .++.+.++.+++.|+ .++++..-...+.-..+++
T Consensus 127 g~kIgviG~~~~~~------~~~~~~~~--~~~~~~d~~----~~~~~~v~~~~~~~~---D~iVvl~H~g~~~d~~la~ 191 (257)
T cd07406 127 GVKIGLLGLVEEEW------LETLTIDP--EYVRYRDYV----ETARELVDELREQGA---DLIIALTHMRLPNDKRLAR 191 (257)
T ss_pred CeEEEEEEEecccc------cccccCCC--CcceEcCHH----HHHHHHHHHHHhCCC---CEEEEEeccCchhhHHHHH
Confidence 67788888753211 01112211 223344553 356677778888887 3444444444444567888
Q ss_pred hCCCcEEEEEe
Q 023344 246 RFPSLKIVTSE 256 (283)
Q Consensus 246 ~~P~v~I~ta~ 256 (283)
.+|++.++.+.
T Consensus 192 ~~~~iD~IlgG 202 (257)
T cd07406 192 EVPEIDLILGG 202 (257)
T ss_pred hCCCCceEEec
Confidence 99999877654
No 264
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=23.16 E-value=2.7e+02 Score=22.97 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=18.7
Q ss_pred CeEEEEeCCchhHHHHhhhhcc
Q 023344 2 NMKIFVDTDADVRLARRIRRDT 23 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr~~rd~ 23 (283)
|+.||+++|.++.+.|-..|..
T Consensus 105 d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 105 KFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred CEEEEEECCHHHHHHHHhcCCc
Confidence 6789999999998888777764
No 265
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=23.11 E-value=2.7e+02 Score=25.67 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=40.4
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEEEeec
Q 023344 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEID 258 (283)
Q Consensus 192 ~i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ta~iD 258 (283)
+++||+|+++-. -||=-.+..+.|.++|+ +...+.=-.-.++.+.+|.+.+|.++++--..|
T Consensus 2 ~~tGKna~vtgg---agGIGl~~sk~Ll~kgi--k~~~i~~~~En~~a~akL~ai~p~~~v~F~~~D 63 (261)
T KOG4169|consen 2 DLTGKNALVTGG---AGGIGLATSKALLEKGI--KVLVIDDSEENPEAIAKLQAINPSVSVIFIKCD 63 (261)
T ss_pred cccCceEEEecC---CchhhHHHHHHHHHcCc--hheeehhhhhCHHHHHHHhccCCCceEEEEEec
Confidence 467888887653 34444455566777776 444444444567888888889998876655544
No 266
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=23.05 E-value=98 Score=27.06 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=28.9
Q ss_pred eEEEEeCCchhHHHHhhhhccccCCCCHHHHHHHh--hhccccCCCCch
Q 023344 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY--ADVIIPRGGDNH 49 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~rgr~~~~v~~qy--aD~iip~~~~~~ 49 (283)
+.|-|.++.++|..|+-.....----.-|--++.| .|++|.|+++..
T Consensus 117 ~~VRV~AseetR~~Rgw~Ft~gvdd~~SEc~lDd~~~~D~vi~Nd~~~~ 165 (182)
T TIGR01223 117 QTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDWVIENHGVEQ 165 (182)
T ss_pred EEEEEecCHHHHHHHHHhccccccccccccCCCcccceeEEEecCCChH
Confidence 35778999999999984432221111122223444 899998877664
No 267
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=22.78 E-value=2.8e+02 Score=27.89 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEE
Q 023344 213 QAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIV 253 (283)
Q Consensus 213 ~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ 253 (283)
..++....+|-+ +++-++.-...|+-+.++.+.+|+.-|.
T Consensus 168 ~v~~~~~~~~~~-~~~g~VvGAT~p~~~~~iR~~~p~~~iL 207 (477)
T PRK05500 168 QVVKEAKTWGTP-EQLGLEVGTTNPEVLAKIRQIAPERLIL 207 (477)
T ss_pred HHHHHHHHhCCC-CceEEEECCCChHHHHHHHHhCCCCEEE
Confidence 455666778864 5776666666789999999988975553
No 268
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=22.36 E-value=94 Score=28.60 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.1
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhC
Q 023344 195 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF 247 (283)
Q Consensus 195 ~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~ 247 (283)
+++|+ ++.+||+..+++-.|.+.|+ ++|.+++- +++-.+.+.+.+
T Consensus 122 ~~~vl----ilGaGGaarAi~~aL~~~g~--~~i~i~nR--~~~~a~~la~~~ 166 (272)
T PRK12550 122 DLVVA----LRGSGGMAKAVAAALRDAGF--TDGTIVAR--NEKTGKALAELY 166 (272)
T ss_pred CCeEE----EECCcHHHHHHHHHHHHCCC--CEEEEEeC--CHHHHHHHHHHh
Confidence 35666 45789999999999999999 56777763 334445665544
No 269
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=22.27 E-value=87 Score=30.56 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEE
Q 023344 209 NSANQAIQLLIEKGVPESHIIFLN 232 (283)
Q Consensus 209 ~t~~~ai~~L~~~G~~e~~I~~v~ 232 (283)
+.+|-|-+.|++.|.+|+||+++-
T Consensus 64 ADvcHAYqiLrkgGikeEnIvv~M 87 (477)
T KOG1348|consen 64 ADVCHAYQILRKGGIKEENIVVMM 87 (477)
T ss_pred hhHHHHHHHHHhcCCCchhEEEEE
Confidence 479999999999999999998875
No 270
>PLN02924 thymidylate kinase
Probab=22.26 E-value=1.4e+02 Score=26.50 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=15.3
Q ss_pred CeEEEEeCCchhHHHHh
Q 023344 2 NMKIFVDTDADVRLARR 18 (283)
Q Consensus 2 d~~ifv~~~~d~~l~rr 18 (283)
|+.+|+|+|.++.+.|.
T Consensus 137 Dlvi~Ld~~~~~a~~R~ 153 (220)
T PLN02924 137 DLVLYLDISPEEAAERG 153 (220)
T ss_pred CEEEEEeCCHHHHHHHh
Confidence 78999999999999874
No 271
>PLN02160 thiosulfate sulfurtransferase
Probab=22.24 E-value=1.5e+02 Score=24.10 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=30.0
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHh
Q 023344 195 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR 246 (283)
Q Consensus 195 ~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~ 246 (283)
++.++++ +++|.....|.+.|+++|. ++++.+ ..|+....++
T Consensus 81 ~~~Iivy---C~sG~RS~~Aa~~L~~~G~--~~v~~l-----~GG~~~W~~~ 122 (136)
T PLN02160 81 ADDILVG---CQSGARSLKATTELVAAGY--KKVRNK-----GGGYLAWVDH 122 (136)
T ss_pred CCcEEEE---CCCcHHHHHHHHHHHHcCC--CCeeec-----CCcHHHHhhC
Confidence 4556664 6899999999999999998 455322 3566666553
No 272
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=22.20 E-value=36 Score=25.70 Aligned_cols=15 Identities=60% Similarity=1.028 Sum_probs=9.3
Q ss_pred CCCCCCee-ecCCCch
Q 023344 260 ALNEEFRV-IPGLGEF 274 (283)
Q Consensus 260 ~ln~~~~i-vPGlGd~ 274 (283)
.|+.+..+ +||+|||
T Consensus 56 ~l~~n~lVHIpG~GDf 71 (83)
T smart00785 56 GLNANQLVHIPGLGDF 71 (83)
T ss_pred CCCCCCEEEeCCcCCe
Confidence 34443333 7999997
No 273
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=22.01 E-value=1.6e+02 Score=21.89 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=23.8
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEE
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 229 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~ 229 (283)
+++.|++++ .+|.....+...|.+.|. .++.
T Consensus 57 ~~~~vv~~c---~~g~rs~~~~~~l~~~G~--~~v~ 87 (101)
T cd01528 57 PDKDIVVLC---HHGGRSMQVAQWLLRQGF--ENVY 87 (101)
T ss_pred CCCeEEEEe---CCCchHHHHHHHHHHcCC--ccEE
Confidence 467788875 468888889999999998 4554
No 274
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=21.81 E-value=3.4e+02 Score=22.63 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEEE
Q 023344 193 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 193 i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ta 255 (283)
+++..+|.+| +|.|....++.|.++. ++.++| ..-.+-.....+|+++|+..
T Consensus 17 I~~~~~Ifld----~GtT~~~la~~L~~~~----~ltVvT---nsl~ia~~l~~~~~~~vi~~ 68 (161)
T PF00455_consen 17 IEDGDTIFLD----SGTTTLELAKYLPDKK----NLTVVT---NSLPIANELSENPNIEVILL 68 (161)
T ss_pred CCCCCEEEEE----CchHHHHHHHHhhcCC----ceEEEE---CCHHHHHHHHhcCceEEEEe
Confidence 4555667666 5888888888887753 343333 22222233345566665543
No 275
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=21.65 E-value=69 Score=33.15 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=39.8
Q ss_pred hhccccCCCCchHH-----------------HHHHHHHHhhhhcccccccCCCceeeecCchHHHHHhHhh-hcCCCChh
Q 023344 38 ADVIIPRGGDNHVA-----------------IDLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLI-RDRGISKH 99 (283)
Q Consensus 38 aD~iip~~~~~~~a-----------------~~~i~~~i~~~l~~~~~~~~~~~v~vl~~~~~l~~llt~L-Rd~~T~~~ 99 (283)
||+||-|-.+..|| .+.+..+|++.=++++ |-+++++|+.+.+.... .++..|.+
T Consensus 519 AdvVitNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~-------VPive~~~LAR~Ly~~~evg~~IP~e 591 (609)
T PRK12772 519 ATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKEND-------VPIIENKPLARLIYKKVEIDQEIPQD 591 (609)
T ss_pred CcEEEECCCceEEEeEeCCCCCCCCEEEEeeCcHHHHHHHHHHHHCC-------CcEEeCHHHHHHHHHcCCCCCCCCHH
Confidence 99999887765444 3455555555555444 66788888888887543 36666666
Q ss_pred hhHhhHH
Q 023344 100 DFVFYSD 106 (283)
Q Consensus 100 ~Fr~~~~ 106 (283)
.|..-++
T Consensus 592 ly~aVA~ 598 (609)
T PRK12772 592 MYQAVAE 598 (609)
T ss_pred HHHHHHH
Confidence 5554433
No 276
>PRK05320 rhodanese superfamily protein; Provisional
Probab=21.62 E-value=2.2e+02 Score=25.91 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=36.9
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCC
Q 023344 193 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPS 249 (283)
Q Consensus 193 i~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~ 249 (283)
++++.|+++ +++|....+|...|+++|. ++++-+ ..|+.+..+..|+
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf--~~V~~L-----~GGi~~w~~~~~~ 219 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGI--DNVYQL-----EGGILKYFEEVGG 219 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCC--cceEEe-----ccCHHHHHHhCCC
Confidence 367877776 7889999999999999999 566422 6788888887776
No 277
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=21.42 E-value=38 Score=25.64 Aligned_cols=15 Identities=47% Similarity=0.868 Sum_probs=9.8
Q ss_pred CCCCCCee-ecCCCch
Q 023344 260 ALNEEFRV-IPGLGEF 274 (283)
Q Consensus 260 ~ln~~~~i-vPGlGd~ 274 (283)
.|+.+..+ +||+|||
T Consensus 58 ~l~~n~lVHIpG~GDF 73 (85)
T PF08142_consen 58 PLSVNQLVHIPGVGDF 73 (85)
T ss_pred cccCCCEEEeCCcCCe
Confidence 44444444 7999998
No 278
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=21.39 E-value=2.4e+02 Score=26.37 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=37.2
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHH-HcCCCCccEEEEEE-eeCHHHHHHHHHhCCCcEEEEE
Q 023344 195 ERHVLLLDPVLATGNSANQAIQLLI-EKGVPESHIIFLNL-ISAPEGIHCVCKRFPSLKIVTS 255 (283)
Q Consensus 195 ~~~Vil~Dp~iaTG~t~~~ai~~L~-~~G~~e~~I~~v~~-vas~~gl~~l~~~~P~v~I~ta 255 (283)
+..+++..|+--|.... ..++.|. ++|.- +.|++=+. +-=.--+...+++||+.++|++
T Consensus 29 ~G~L~VhSPvapT~el~-~~l~~L~~~~G~V-kyIVaPn~~lEH~lfl~~w~~afP~A~v~~~ 89 (285)
T PF14234_consen 29 DGGLWVHSPVAPTPELK-AELDELEAQHGPV-KYIVAPNKGLEHHLFLGPWARAFPDAKVWAP 89 (285)
T ss_pred CCCEEEECCCCCCHHHH-HHHHHHhccCCce-eEEEcCCcchhHHHhHHHHHHHCCCCEEEeC
Confidence 45699999998887654 5566664 45641 22211111 0112347788999999999986
No 279
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.38 E-value=1.1e+02 Score=27.35 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=36.6
Q ss_pred CcccchH-HHHHHHHHHHHcCCCCccEEEEEEeeCHHHHHHHHHhCCCcEEEEEeecCC
Q 023344 203 PVLATGN-SANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVA 260 (283)
Q Consensus 203 p~iaTG~-t~~~ai~~L~~~G~~e~~I~~v~~vas~~gl~~l~~~~P~v~I~ta~iD~~ 260 (283)
|+.+.|+ +-..-++.|.+.|+ +++++=+....++=++++.+.|++ ++.++|-.
T Consensus 75 pv~~gGGIrs~edv~~l~~~G~--~~vivGtaa~~~~~l~~~~~~~g~---ivvslD~~ 128 (228)
T PRK04128 75 KVQVGGGLRTYESIKDAYEIGV--ENVIIGTKAFDLEFLEKVTSEFEG---ITVSLDVK 128 (228)
T ss_pred CEEEcCCCCCHHHHHHHHHCCC--CEEEECchhcCHHHHHHHHHHcCC---EEEEEEcc
Confidence 4455554 34455566777899 577665543389999999999986 56678874
No 280
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=21.36 E-value=1.1e+02 Score=25.58 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=12.4
Q ss_pred eEEEEeCCchhHHHH
Q 023344 3 MKIFVDTDADVRLAR 17 (283)
Q Consensus 3 ~~ifv~~~~d~~l~r 17 (283)
..||+++|.+.+..|
T Consensus 118 ~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 118 IEVFVDCPLEVCEQR 132 (184)
T ss_pred EEEEEeCCHHHHHHh
Confidence 458999999988777
No 281
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.35 E-value=65 Score=31.12 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=42.3
Q ss_pred hhccccCCCCchHH-----------------HHHHHHHHhhhhcccccccCCCceeeecCchHHHHHhHhhh-cCCCChh
Q 023344 38 ADVIIPRGGDNHVA-----------------IDLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIR-DRGISKH 99 (283)
Q Consensus 38 aD~iip~~~~~~~a-----------------~~~i~~~i~~~l~~~~~~~~~~~v~vl~~~~~l~~llt~LR-d~~T~~~ 99 (283)
||+||-|-.+..|| .+.+..+|++.-.+++ |-+++++|+.+.+..... +...|..
T Consensus 251 AdVVItNPTH~AVALkYd~~~~~AP~VvAKG~d~~A~~IreiA~e~~-------VPiven~pLARaLY~~vevg~~IP~e 323 (361)
T PRK08156 251 SRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVG-------VPVVRDIKLARRLYKTHRRYSFVSLE 323 (361)
T ss_pred CcEEEECCCeEEEEEEecCCCCCCCEEEEecCcHHHHHHHHHHHHCC-------CCEeeCHHHHHHHHHhCCCCCcCCHH
Confidence 99999887655433 4555666666665555 668888898888876554 5566666
Q ss_pred hhHhhHHHHH
Q 023344 100 DFVFYSDRLI 109 (283)
Q Consensus 100 ~Fr~~~~rl~ 109 (283)
.|..-+.-|+
T Consensus 324 ly~AVA~iLa 333 (361)
T PRK08156 324 DLDEVLRLLI 333 (361)
T ss_pred HHHHHHHHHH
Confidence 5555444333
No 282
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=21.33 E-value=2.8e+02 Score=22.66 Aligned_cols=55 Identities=29% Similarity=0.504 Sum_probs=29.3
Q ss_pred eEEEEeCCchhHHHHhhhhccccC----CCCH----HHHH-------HHhhhccccCCCCc-hHHHHHHHHHH
Q 023344 3 MKIFVDTDADVRLARRIRRDTVER----GRDV----DSVL-------EQYADVIIPRGGDN-HVAIDLIVQHI 59 (283)
Q Consensus 3 ~~ifv~~~~d~~l~rr~~rd~~~r----gr~~----~~v~-------~qyaD~iip~~~~~-~~a~~~i~~~i 59 (283)
..||++.|.+. +.+|+..+-. | +... .+.+ +++||++++.+... ...++.|++.|
T Consensus 87 ~vI~L~~~~~~-l~~Rl~~~~~-Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 87 LVIYLDADPEE-LAERLRARDN-RPLLKGKMEHEEILELLFEREPLYEQAADIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp EEEEEE--HHH-HHHHHHHHCT-SGGTCSHHHHHHHHHHHHHHHHHHHHHSSEEEETSSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHH-HHHHHhCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhcCeEEEeCCCCCHHHHHHHHHHHh
Confidence 57999999995 5666655443 2 1111 1121 12299999887665 44444454444
No 283
>PRK09108 type III secretion system protein HrcU; Validated
Probab=21.33 E-value=57 Score=31.36 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=40.9
Q ss_pred hhccccCCCCchHH-----------------HHHHHHHHhhhhcccccccCCCceeeecCchHHHHHhHhhhcCCCChhh
Q 023344 38 ADVIIPRGGDNHVA-----------------IDLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHD 100 (283)
Q Consensus 38 aD~iip~~~~~~~a-----------------~~~i~~~i~~~l~~~~~~~~~~~v~vl~~~~~l~~llt~LRd~~T~~~~ 100 (283)
||+||-|-.+..|| .+.+..+|++.-.+++ |-+++++|+.+.+-+.=-+...|...
T Consensus 258 AdvVItNPTH~AVAL~Y~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~-------VPvven~pLARaLy~~~vg~~IP~el 330 (353)
T PRK09108 258 ANVVVVNPTHYAVALRYAPDEHPLPRVIAKGVDDGALALRRHAHALG-------IPIVGNPPVARALYRVELDEPIPEEL 330 (353)
T ss_pred CcEEEECCCceEEEeEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcC-------CCEEeCHHHHHHHhcCCCCCcCCHHH
Confidence 99999887665444 3445555555555444 66888888888888422366666666
Q ss_pred hHhhHHHH
Q 023344 101 FVFYSDRL 108 (283)
Q Consensus 101 Fr~~~~rl 108 (283)
|..-++-|
T Consensus 331 y~aVA~iL 338 (353)
T PRK09108 331 FETVAAIL 338 (353)
T ss_pred HHHHHHHH
Confidence 65544433
No 284
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.26 E-value=2.2e+02 Score=27.66 Aligned_cols=60 Identities=22% Similarity=0.306 Sum_probs=39.9
Q ss_pred hhccccCCCCchHHH-----------------HHHHHHHhhhhcccccccCCCceeeecCchHHHHHhHhhh-cCCCChh
Q 023344 38 ADVIIPRGGDNHVAI-----------------DLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIR-DRGISKH 99 (283)
Q Consensus 38 aD~iip~~~~~~~a~-----------------~~i~~~i~~~l~~~~~~~~~~~v~vl~~~~~l~~llt~LR-d~~T~~~ 99 (283)
||+||-|-.+..||+ +.+.-.|++.-+++ +|-++++||+.+.+-..-+ |+..|..
T Consensus 263 AdvVItNPTH~AVAlkY~~~~~~AP~VvAKG~d~~AlkIreiA~e~-------~Ipi~enppLARaLY~~~~v~~~IP~e 335 (363)
T COG1377 263 ADVVITNPTHYAVALKYDPEKMPAPVVVAKGVDLVALKIREIAKEH-------GIPIIENPPLARALYRQVEVGQQIPEE 335 (363)
T ss_pred CCEEeeCcCceeeeeeeccccCCCCEEEEeCCcHHHHHHHHHHHHc-------CCceecChHHHHHHHHhcCccccCCHH
Confidence 999999988776664 34444444444444 4668888998888877555 6666666
Q ss_pred hhHhh
Q 023344 100 DFVFY 104 (283)
Q Consensus 100 ~Fr~~ 104 (283)
.|..-
T Consensus 336 ~y~aV 340 (363)
T COG1377 336 LYKAV 340 (363)
T ss_pred HHHHH
Confidence 55443
No 285
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=20.91 E-value=2.7e+02 Score=25.18 Aligned_cols=81 Identities=9% Similarity=0.091 Sum_probs=45.9
Q ss_pred cchHHHHHHHHhccCceeeeEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHH-HcCCCCccEEE
Q 023344 152 SGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLI-EKGVPESHIIF 230 (283)
Q Consensus 152 aG~~m~~~l~~~~p~a~~G~i~i~R~~~t~~~~~y~~lP~~i~~~~Vil~Dp~iaTG~t~~~ai~~L~-~~G~~e~~I~~ 230 (283)
+|+..++.+++.+|+..+-+++=. ...|-.-+.+.-+ ..-+...++.|. ++|+ +-|++
T Consensus 9 GGltv~~~l~~~~p~~~~iy~~D~-----------~~~PYG~ks~~~i--------~~~~~~~~~~L~~~~g~--d~ivI 67 (251)
T TIGR00067 9 GGLSVLKEIRKQLPKEHYIYVGDT-----------KRFPYGEKSPEFI--------LEYVLELLTFLKERHNI--KLLVV 67 (251)
T ss_pred cHHHHHHHHHHHCCCCCEEEEecC-----------CCCCCCCCCHHHH--------HHHHHHHHHHHHHhCCC--CEEEE
Confidence 467788999999998876222111 2344222211100 234456677777 7887 45555
Q ss_pred EEEeeCHHHHHHHHHhCCCcEEEE
Q 023344 231 LNLISAPEGIHCVCKRFPSLKIVT 254 (283)
Q Consensus 231 v~~vas~~gl~~l~~~~P~v~I~t 254 (283)
.|==++.-.++.+.+.++ +.|+.
T Consensus 68 aCNTA~a~~~~~l~~~~~-iPii~ 90 (251)
T TIGR00067 68 ACNTASALALEDLQRNFD-FPVVG 90 (251)
T ss_pred eCchHHHHHHHHHHHHCC-CCEEe
Confidence 554444466888877763 55443
No 286
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=20.79 E-value=1.2e+02 Score=22.41 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=22.8
Q ss_pred HHHHHhHhhhcCCCChhhhHhhHHHHHHH
Q 023344 83 QIRGMHTLIRDRGISKHDFVFYSDRLIRL 111 (283)
Q Consensus 83 ~l~~llt~LRd~~T~~~~Fr~~~~rl~~l 111 (283)
.+++++..+|+.+-+.++|+.+++-|.+.
T Consensus 11 lv~~lh~~i~e~~lT~~E~~~av~~L~~~ 39 (74)
T PF04444_consen 11 LVRHLHDFIREVDLTEDEWWAAVDFLNRV 39 (74)
T ss_dssp HHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987766554
No 287
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=20.66 E-value=1.5e+02 Score=21.94 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=21.7
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCC
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKGV 223 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G~ 223 (283)
+++.|+++ +++|.....|.+.|+++|.
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~ 86 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGY 86 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCc
Confidence 35666664 6788888999999999998
No 288
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=20.27 E-value=1.7e+02 Score=26.11 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=18.2
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcC
Q 023344 194 SERHVLLLDPVLATGNSANQAIQLLIEKG 222 (283)
Q Consensus 194 ~~~~Vil~Dp~iaTG~t~~~ai~~L~~~G 222 (283)
++..++.+ .||.|+...++.|.++.
T Consensus 14 ~~g~~I~l----dsGST~~~~~~~L~~~~ 38 (218)
T TIGR00021 14 EDGMVVGL----GTGSTVAYFIEALGERV 38 (218)
T ss_pred CCCCEEEE----CCcHHHHHHHHHHHHhh
Confidence 34445544 58999999999998754
No 289
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=20.27 E-value=3.8e+02 Score=25.52 Aligned_cols=88 Identities=25% Similarity=0.417 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCCCCeeEEEe--CCCCceeeeeeeccceeE--EEecccchHHHHHHHHhccCceeeeEEEEecCCC-
Q 023344 106 DRLIRLVVEHGLGHLPFTEKQVV--TPTGSMYTGVDFCKKLCG--VSIVRSGESMENALRACCKGIKIGKILIHRDGDN- 180 (283)
Q Consensus 106 ~rl~~lL~~eal~~lp~~~~~v~--TP~g~~~~g~~~~~~i~~--V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R~~~t- 180 (283)
++.+.+.-+.....+.....+|+ -|+|. | ..+|+ +++|--|++|+-| +.+.|-.++.+....
T Consensus 183 k~~~~~~~e~~~E~~eL~~a~vt~ieplG~---g----DRVCVDTcsLm~~gEGMLVG------s~s~gmFlVhsEs~es 249 (376)
T COG1465 183 KKTAEVVEEAESERLELVTATVTEIEPLGS---G----DRVCVDTCSLMTRGEGMLVG------SQSRGMFLVHSESEES 249 (376)
T ss_pred HHHHHHHHHhccceeEEEEEEEEEEeecCC---C----ceEEEeeecccccCCceEee------cccCcEEEEecccccC
Confidence 34444433333345666655554 47774 3 35665 6899999999533 445565666544221
Q ss_pred ------------CceeEeccCCCCCC--------CcEEEEEcCccc
Q 023344 181 ------------GKQLIYEKLPNDIS--------ERHVLLLDPVLA 206 (283)
Q Consensus 181 ------------~~~~~y~~lP~~i~--------~~~Vil~Dp~ia 206 (283)
|+.-.|.+.|.+-. |..|+++|---.
T Consensus 250 pYVAaRPFRVNAG~VhaYi~vPg~kTkYLaEL~aGDeV~iVD~dGr 295 (376)
T COG1465 250 PYVAARPFRVNAGAVHAYIRVPGGKTKYLAELKAGDEVLIVDFDGR 295 (376)
T ss_pred cccccCceeecccceeEEEEcCCCceEEhhhhcCCCeEEEEecCCc
Confidence 23446889986432 678999995433
No 290
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=20.03 E-value=53 Score=31.38 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=37.5
Q ss_pred hhccccCCCCchHH-----------------HHHHHHHHhhhhcccccccCCCceeeecCchHHHHHhHhhh-cCCCChh
Q 023344 38 ADVIIPRGGDNHVA-----------------IDLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIR-DRGISKH 99 (283)
Q Consensus 38 aD~iip~~~~~~~a-----------------~~~i~~~i~~~l~~~~~~~~~~~v~vl~~~~~l~~llt~LR-d~~T~~~ 99 (283)
||+||-|-.+..|| .+.+..+|++.-.+++ |-+++++|+.+.+..... +...|.+
T Consensus 258 A~vVItNPTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~-------VPiven~pLARaLy~~~~~g~~IP~e 330 (343)
T PF01312_consen 258 ADVVITNPTHYAVALRYDPGEMPAPIVVAKGADELALRIREIAREHG-------VPIVENPPLARALYRTVEVGQEIPEE 330 (343)
T ss_dssp -SEEEEETTTEEEEEEEETTTCSSEEEEEEEECHHHHHHHHHHHHHT---------EEE-HHHHHHHHHHS-TTSB--GG
T ss_pred CcEEEECCcceeEEEEeCCCCCCCCEEeeeccHHHHHHHHHHHHHcC-------CCeeeCHHHHHHHHhcCCCCCcCCHH
Confidence 99999987765444 3445555555555444 668888998898888765 6677777
Q ss_pred hhHhhHHH
Q 023344 100 DFVFYSDR 107 (283)
Q Consensus 100 ~Fr~~~~r 107 (283)
.|..-++-
T Consensus 331 ly~aVA~i 338 (343)
T PF01312_consen 331 LYEAVAEI 338 (343)
T ss_dssp GHHHHHHH
T ss_pred HHHHHHHH
Confidence 66554433
Done!