RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023344
(283 letters)
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 257 bits (657), Expect = 2e-86
Identities = 117/244 (47%), Positives = 166/244 (68%), Gaps = 11/244 (4%)
Query: 39 DVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISK 98
++ PR N ++ D+ +PNV +++ T Q+R M T+IRD+ K
Sbjct: 9 LLVDPRYSTNDQEESIL----------QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPK 58
Query: 99 HDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMEN 158
+FVFY+DRLIRL++E L LPF +K+V TP Y GV F K+CGVSIVR+GESME+
Sbjct: 59 EEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMES 118
Query: 159 ALRACCKGIKIGKILIHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQL 217
LRA C+G++IGKILI RD + +LIYEKLP DI ER V+LLDP+ AT S +AI++
Sbjct: 119 GLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEV 178
Query: 218 LIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDR 277
L+ GV E IIF+N+++AP+GI V K +P +++VT+ +D+ LN + ++PG+G+FGDR
Sbjct: 179 LLRLGVKEERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDR 238
Query: 278 YFGT 281
YFGT
Sbjct: 239 YFGT 242
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 239 bits (611), Expect = 1e-79
Identities = 67/212 (31%), Positives = 113/212 (53%), Gaps = 2/212 (0%)
Query: 72 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPT 131
+PN++++ I+ T +RD+ S F + L+ +LP T K+V TP
Sbjct: 8 FPNLFILDHP-LIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPL 66
Query: 132 GSMYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPN 191
+ V KKL V ++R+G M + L ++G I ++R D+ + + Y
Sbjct: 67 VEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRA-DDHRPVEYLVRLP 125
Query: 192 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLK 251
D+ +R +L DP++ATG SA AI +L +GVP ++FL L++APEG+ P +K
Sbjct: 126 DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVK 185
Query: 252 IVTSEIDVALNEEFRVIPGLGEFGDRYFGTDD 283
+ + +D L++ ++PGLG+ GDR FGT +
Sbjct: 186 LYVASLDSHLDDHAYIVPGLGDAGDRLFGTKN 217
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 218 bits (557), Expect = 2e-71
Identities = 69/217 (31%), Positives = 107/217 (49%), Gaps = 4/217 (1%)
Query: 66 HDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEK 125
H N+ V+ I+ T++RD+ +F + L+ HL E
Sbjct: 7 HHHHHHMKNLVVVD-HPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEV 65
Query: 126 QVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLI 185
+V TP K + V I+R+G M + + +G I I+RD + + +
Sbjct: 66 EVETPITKTIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVE 125
Query: 186 Y-EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 244
Y KLP ++ V LLDP+LATG S+ +AI++L E G I + LI+APEG+ V
Sbjct: 126 YYAKLPPLNDDKEVFLLDPMLATGVSSIKAIEILKENGAK--KITLVALIAAPEGVEAVE 183
Query: 245 KRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGT 281
K++ +KI + +D LN+ +IPGLG+ GDR F T
Sbjct: 184 KKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRT 220
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 217 bits (555), Expect = 2e-71
Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 4/209 (1%)
Query: 74 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGS 133
VYV I+ T IRD+ +F D + L+ LP E ++ TP
Sbjct: 3 KVYVFD-HPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSK 61
Query: 134 MYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQ-LIYEKLPND 192
V KKL + I+R+G M + + K+G I ++RD K Y KLP+D
Sbjct: 62 ARAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSD 121
Query: 193 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKI 252
+ ER +++DP+LATG SA AI L ++G I F+ LI+APEG+ V P + I
Sbjct: 122 VEERDFIIVDPMLATGGSAVAAIDALKKRGAK--SIKFMCLIAAPEGVKAVETAHPDVDI 179
Query: 253 VTSEIDVALNEEFRVIPGLGEFGDRYFGT 281
+ +D LN+ ++PGLG+ GDR FGT
Sbjct: 180 YIAALDERLNDHGYIVPGLGDAGDRLFGT 208
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 216 bits (552), Expect = 6e-71
Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 4/208 (1%)
Query: 75 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 134
+ ++ ++ +RD+ DF ++ + L+ + L E V TP
Sbjct: 3 ITLVD-HPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPA 61
Query: 135 YTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGK-QLIYEKLPNDI 193
V KKL V+I+R+G M + ++G I ++RD ++ Y KLP DI
Sbjct: 62 RVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDI 121
Query: 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIV 253
+ER LLDP+LATG SA+ A+ LL E+G + + +++APEG+ + K P ++V
Sbjct: 122 AERRAFLLDPMLATGGSASLALSLLKERGAT--GVKLMAILAAPEGLERIAKDHPDTEVV 179
Query: 254 TSEIDVALNEEFRVIPGLGEFGDRYFGT 281
+ ID LN+ ++PGLG+ GDR +GT
Sbjct: 180 VAAIDERLNDHGYIVPGLGDAGDRIYGT 207
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A
{Aquifex aeolicus}
Length = 208
Score = 215 bits (550), Expect = 1e-70
Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 2/208 (0%)
Query: 75 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 134
+ V S I+ R + S L ++V L + EK+V T G+
Sbjct: 1 MIVELSHPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNK 60
Query: 135 YTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDIS 194
+++ V I+R+G S K+G + I R+ + + IY ++
Sbjct: 61 RFNYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLPELK 120
Query: 195 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 254
+ V++LDP+LATG + A++ +++ + ++ I+APEG+ + ++F ++I
Sbjct: 121 GKIVVILDPMLATGGTLEVALREILKHSP--LKVKSVHAIAAPEGLKRIEEKFKEVEIFV 178
Query: 255 SEIDVALNEEFRVIPGLGEFGDRYFGTD 282
+D LN++ +IPGLG+ GDR +
Sbjct: 179 GNVDERLNDKGYIIPGLGDIGDRLYAVS 206
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A
{Escherichia coli}
Length = 208
Score = 201 bits (513), Expect = 5e-65
Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 4/209 (1%)
Query: 74 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGS 133
+ ++ ++ L+R++ IS F + + L+ L + + G
Sbjct: 2 KIVEVK-HPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGP 60
Query: 134 MYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQ-LIYEKLPND 192
+ KK+ V I+R+G M + + +I + ++R+ + + ++KL ++
Sbjct: 61 VEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSN 120
Query: 193 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKI 252
I ER L++DP+LATG S I LL + G S I L L++APEGI + K P +++
Sbjct: 121 IDERMALIVDPMLATGGSVIATIDLLKKAGC--SSIKVLVLVAAPEGIAALEKAHPDVEL 178
Query: 253 VTSEIDVALNEEFRVIPGLGEFGDRYFGT 281
T+ ID LNE +IPGLG+ GD+ FGT
Sbjct: 179 YTASIDQGLNEHGYIIPGLGDAGDKIFGT 207
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A*
1xtu_A* 1xtv_A* 3g6w_A*
Length = 216
Score = 191 bits (487), Expect = 5e-61
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 14/217 (6%)
Query: 75 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 134
+YVI + T +RD+ + +F RL R++ L + +V TP G
Sbjct: 3 LYVIDKP-ITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVK 61
Query: 135 YTGVDFC--KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQ--------L 184
GVD + ++I+R+ + L + G I R +GK+ +
Sbjct: 62 TKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYI 121
Query: 185 IYEKLPNDISE-RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCV 243
Y+K+P+ ++ +V++ DP++AT ++ + ++ +++ I +++IS+ G++ +
Sbjct: 122 YYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANP--KRIYIVSIISSEYGVNKI 179
Query: 244 CKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFG 280
++P + + T ID LN + ++PGLG+ GDR FG
Sbjct: 180 LSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 107 bits (270), Expect = 1e-28
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 18/83 (21%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVII 42
M++K+FVD DAD R RR++RD +ERGR ++ V+ QY ADVI+
Sbjct: 125 MDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIV 184
Query: 43 PRGGDNHVAIDLIVQHIHTKLGQ 65
PRGG N VA++++ +L +
Sbjct: 185 PRGGQNPVALEMLAAKALARLAR 207
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 102 bits (256), Expect = 3e-26
Identities = 44/92 (47%), Positives = 57/92 (61%), Gaps = 20/92 (21%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVII 42
++++FVDTD+DVRL+RR+ RD V RGRD++ +L QY ADVII
Sbjct: 154 FHLRLFVDTDSDVRLSRRVLRD-VRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVII 212
Query: 43 PRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPN 74
PRG DN VAI+LIVQHI L D+CK +
Sbjct: 213 PRGVDNMVAINLIVQHIQDIL-NGDICKWHRG 243
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 98.4 bits (245), Expect = 1e-24
Identities = 43/83 (51%), Positives = 50/83 (60%), Gaps = 18/83 (21%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY------------------ADVII 42
MK+FVDTDAD RL+RR+ RD ERGRD++ +L QY ADVII
Sbjct: 151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210
Query: 43 PRGGDNHVAIDLIVQHIHTKLGQ 65
PRG DN VAI+LIVQHI L
Sbjct: 211 PRGADNLVAINLIVQHIQDILNG 233
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 67.8 bits (165), Expect = 2e-13
Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 38/130 (29%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY-----------------ADVIIP 43
++KI V ++ ++I RD RG ++V + D+
Sbjct: 148 ADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQ 207
Query: 44 RGGDNHVAIDLIVQHIHTKLGQHDLCKIY---------------------PNVYVIQSTF 82
R + I + I T + + N V+
Sbjct: 208 RVPVVDTSNPFIARWIPTADESVVVIRFRNPRGIDFPYLTSMIHGSWMSRANSIVVPGNK 267
Query: 83 QIRGMHTLIR 92
M ++
Sbjct: 268 LDLAMQLILT 277
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 57.0 bits (138), Expect = 5e-10
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 20/59 (33%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY----------------ADVIIP 43
+ +++D ++R AR + +++ + +Y ADV+
Sbjct: 144 FDFVVYLDCPREIRFARENDQ----VKQNIQKFINRYWKAEDYYLETEEPIKRADVVFD 198
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 53.4 bits (128), Expect = 2e-08
Identities = 8/87 (9%), Positives = 20/87 (22%), Gaps = 37/87 (42%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTV---ERGRDVDSVLEQY-------------------- 37
+ ++VD + + R D +S Y
Sbjct: 218 FDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTIN 277
Query: 38 --------------ADVIIPRGGDNHV 50
A +++ + D+ +
Sbjct: 278 RPNLVENILPTRPRATLVLRKDADHSI 304
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 52.4 bits (126), Expect = 2e-08
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 18/62 (29%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY-----------------ADVIIP 43
++ I ++ AR ++R ++ G + D+ + + AD+ P
Sbjct: 148 WDVSIRLEVPMADLEARLVQRW-LDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWP 206
Query: 44 RG 45
+
Sbjct: 207 QA 208
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 50.3 bits (120), Expect = 2e-07
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 37/87 (42%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERG---RDVDSVLEQY-------------------- 37
++ I+VD D+ I R R D DS Y
Sbjct: 215 VDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEIN 274
Query: 38 --------------ADVIIPRGGDNHV 50
A +I+ + ++ V
Sbjct: 275 WLNLKQNILPTRERASLILTKSANHAV 301
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 44.1 bits (104), Expect = 1e-05
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 15/78 (19%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVER---GRDVDSV----------LEQYADVIIPRGGD 47
N F+ + RR R G V ++ ++ D
Sbjct: 130 WNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVY--LD 187
Query: 48 NHVAIDLIVQHIHTKLGQ 65
+ + + ++ L Q
Sbjct: 188 GTKSEEDLFLQVYEDLIQ 205
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 40.7 bits (95), Expect = 3e-04
Identities = 9/97 (9%), Positives = 22/97 (22%), Gaps = 47/97 (48%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERG-------------RDVDSVLEQY---------- 37
+++FV D L + +++ +D S
Sbjct: 217 QQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAA 276
Query: 38 ------------------------ADVIIPRGGDNHV 50
A +I+ + D+ +
Sbjct: 277 FAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSI 313
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 37.3 bits (86), Expect = 0.003
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 187 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIH 241
+ R V+L+D +ATG S A+ ++ ++G ++ +++PE +
Sbjct: 112 VRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGP--RRVVVAVPVASPEAVE 164
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} SCOP: c.61.1.1
Length = 153
Score = 33.4 bits (77), Expect = 0.030
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 175 HRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHI 228
D K +I + D+ ++ V+++D V TG + I+ + + G E I
Sbjct: 63 GIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKI 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.040
Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 85/216 (39%)
Query: 25 ERGRDVDSVLEQYADVIIPRGGDNHVAIDLIVQHIHTKL------GQHDLCKI--Y--PN 74
E+G+ + E Y+ +I D + + I + I+ + L + P
Sbjct: 1679 EKGK---RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 75 VYVIQ-STFQIRGMHTLIRDRGISKHDFVF-------YS------------DRLIRLVVE 114
+ +++ + F+ ++ +G+ D F Y+ L+ +V
Sbjct: 1736 LTLMEKAAFE------DLKSKGLIPADATFAGHSLGEYAALASLADVMSIES-LVEVVFY 1788
Query: 115 HGLGHLPFTEKQV--------------VTPTGSMYTGVD------FCKKLCG-----VSI 149
G+ + V + P G + +++ V I
Sbjct: 1789 RGM----TMQVAVPRDELGRSNYGMIAINP-GRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 150 ----------VRSGESMENALRA---CCKGIKIGKI 172
V +G+ AL IK+ KI
Sbjct: 1844 VNYNVENQQYVAAGD--LRALDTVTNVLNFIKLQKI 1877
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.054
Identities = 43/306 (14%), Positives = 85/306 (27%), Gaps = 94/306 (30%)
Query: 57 QHIHTKLGQHDLC--KIYPNVYVIQSTF-----------QIRGM-------HTLIRDRGI 96
H+ + G+H I V + F + + H ++ +
Sbjct: 5 HHMDFETGEHQYQYKDILS---VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 97 SKHDFVF-----YSDRLIRLVVEHGLG-HLPFTEKQVVT----PTGSMYTGVDFCKKLCG 146
S +F + +++ VE L + F + T P+ ++ +L
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 147 V-------SIVRSGESMENALRACCKGIKIGK-ILIHRDGDNGKQ-L---------IYEK 188
++ R LR ++ K +LI +GK + + K
Sbjct: 122 DNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 189 LPNDI---------SERHVL--------LLDPVLATGNSANQAIQ------------LLI 219
+ I S VL +DP + + + I+ LL
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 220 EKGVPESHIIFLNLISAPE-----GIHC---VCKRFPSLKIVTSEIDVALNEEFRVIPGL 271
K ++ LN + + + C + RF VT + A +
Sbjct: 240 SKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQ---VTDFLSAATTTHISLDHHS 295
Query: 272 GEFGDR 277
Sbjct: 296 MTLTPD 301
Score = 33.7 bits (76), Expect = 0.079
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 4 KIFVDTDADVR-LARRIRRDTVERGR-----DVDSVLEQYADVIIPRGGDNHVAIDLIVQ 57
+F+D R L ++IR D+ + L+ Y I ++ I+
Sbjct: 495 MVFLD----FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 58 HIHTKLGQHDLCKIYPNVYVIQSTFQ 83
+ K+ ++ +++
Sbjct: 551 FLP-KIEEN--LICSKYTDLLRIALM 573
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP:
c.61.1.1
Length = 201
Score = 32.8 bits (75), Expect = 0.075
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 172 ILIHRD--GDNGKQLIYEK--LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 226
I ++RD + + I + V+L+D VL +G S A+ L + G P +
Sbjct: 85 ITLYRDDLMIKPPRPLASTSIPAGGIDDALVILVDDVLYSGRSVRSALDALRDVGRPRA 143
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage, FLIP pepti; HET:
5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A*
2jky_A*
Length = 221
Score = 32.4 bits (73), Expect = 0.11
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 184 LIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231
+ YE+ D+ ++VL++D V T + + A+ L + ++ +
Sbjct: 92 IDYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQAKAKGI 139
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide
biosynthesis, transcriptional attenuation, RNA-binding
protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Length = 181
Score = 31.5 bits (72), Expect = 0.16
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 175 HRD--GDNGKQLIYEK--LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 226
+RD + G + + +P D++ + ++L+D VL TG +A A+ LI+ G P
Sbjct: 72 YRDDLTEIGYRPQVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPRR 127
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET:
BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Length = 234
Score = 31.8 bits (73), Expect = 0.18
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 171 KILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIF 230
K + ++ G ++ + L +I+ L LATG++ + + + E + S ++
Sbjct: 3 KTIKVKNKTEGSKVAFRMLEEEITFGAKTL---GLATGSTPLELYKEIRESHLDFSDMVS 59
Query: 231 LNL 233
+NL
Sbjct: 60 INL 62
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription
regulation, attenuation protein, RNA-binding P
pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP:
c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Length = 181
Score = 31.1 bits (71), Expect = 0.23
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 188 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 226
+P DI+++ V+L+D VL TG + + L++ G P S
Sbjct: 91 DIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSS 129
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding
protein, ABC trans binding protein; 1.80A {Treponema
pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Length = 313
Score = 31.5 bits (72), Expect = 0.26
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 5 IFVDTDADVRLARRIRRDTVERGRDVDSVLEQYADVIIPRGGDNHVAIDLI---VQHIHT 61
IF+++ + +R RG V E ++D + G + ++ + I
Sbjct: 250 IFIESSIPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVA 309
Query: 62 KLGQ 65
L +
Sbjct: 310 ALAR 313
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 30.2 bits (69), Expect = 0.84
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 34 LEQYADVIIPRGG 46
L +Y ++IPRGG
Sbjct: 204 LREYLSLVIPRGG 216
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 29.9 bits (68), Expect = 0.93
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 34 LEQYADVIIPRGG 46
++Y D+++PRG
Sbjct: 207 QDEYIDLVVPRGS 219
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 29.5 bits (67), Expect = 1.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 34 LEQYADVIIPRGG 46
L++ D+IIPRG
Sbjct: 216 LDKMIDLIIPRGS 228
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 29.2 bits (65), Expect = 1.5
Identities = 6/62 (9%), Positives = 26/62 (41%), Gaps = 16/62 (25%)
Query: 70 KIYPNVYVIQSTF-------QIRGMHTLIRDRGIS---------KHDFVFYSDRLIRLVV 113
+ +++++ S Q + + ++D +S H+ V+ + ++ + +
Sbjct: 210 RFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYKNGKVAKYIF 269
Query: 114 EH 115
++
Sbjct: 270 DN 271
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 28.6 bits (64), Expect = 2.9
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 207 TGNSANQAIQLLIEKGVPESHII 229
T + + L+ +GV I+
Sbjct: 393 TAYTTVNGVNALLAQGVKPGKIV 415
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 28.3 bits (63), Expect = 2.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 202 DPVLATGNSANQAIQLLIEKGVPESHII 229
+P +A+ IQLL+ +GVP + ++
Sbjct: 407 EPYKGPAYTADNGIQLLLAQGVPANKLV 434
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold;
HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1
PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Length = 236
Score = 27.3 bits (61), Expect = 4.6
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 183 QLIYEKLPNDISERH---------VLLLDPVLATGNSANQAIQLLIEK 221
+ Y++ ++ V+L+D VLATG +A +Q L+E
Sbjct: 117 EKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQ-LVEA 163
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
c.61.1.1 PDB: 1g2p_A
Length = 187
Score = 27.1 bits (61), Expect = 5.5
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 198 VLLLDPVLATGNSANQAIQLLIEK 221
V+++D ++ATG SA A + L+E+
Sbjct: 125 VIIVDDIIATGGSAAAAGE-LVEQ 147
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 27.4 bits (61), Expect = 5.6
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 206 ATGNSANQAIQLLIEKGVPESHII 229
+ SA++A++ + G+ +
Sbjct: 290 SKKFSADKAVKKYLAAGIDPKQLG 313
>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
riken structural genomics/proteomics initiative, RSGI;
1.94A {Thermus thermophilus} SCOP: c.61.1.1
Length = 175
Score = 27.0 bits (60), Expect = 6.2
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 196 RHVLLLDPVLATGNSANQAIQLLIEKG 222
+ V+L+ V+A+G + ++++ G
Sbjct: 121 QRVVLVSDVVASGETMRAMEKMVLRAG 147
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase,
purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP:
c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Length = 180
Score = 26.7 bits (60), Expect = 6.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 198 VLLLDPVLATGNSANQAIQLL 218
V+++D +LATG + N A +LL
Sbjct: 123 VVVVDDLLATGGTMNAACELL 143
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural
genomics, JOI for structural genomics, JCSG; HET: GOL;
2.40A {Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 26.8 bits (60), Expect = 7.2
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 37/99 (37%)
Query: 1 MNMKIFVDTDADVRLARR----------------IRRDTVERGRDVDSVLEQYADVIIPR 44
+MKIF+DT A++ ++ I ++ G + +++ D++
Sbjct: 11 HHMKIFLDT-ANLEEIKKGVEWGIVDGVTTNPTLISKE----GAEFKQRVKEICDLV--- 62
Query: 45 GGDNHV------AIDLIVQHIHTKLGQHDLCKIYPNVYV 77
G ++ + +L +I V +
Sbjct: 63 KGPVSAEVVSLDYEGMVREA-------RELAQISEYVVI 94
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 26.9 bits (60), Expect = 7.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 206 ATGNSANQAIQLLIEKGVPESHII 229
+T S A+ I GVP S II
Sbjct: 247 STPFSTKAAVDAYIAAGVPASKII 270
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 26.9 bits (60), Expect = 8.1
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 95 GISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKK 143
+ + D L R V E L LP + V + G + +
Sbjct: 175 NVVEAD-------LKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVR 216
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 26.9 bits (60), Expect = 8.2
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 206 ATGNSANQAIQLLIEKGVPESHII 229
+T S+++A++ I+ GVP + I+
Sbjct: 229 STPFSSDKAVKDYIKAGVPANKIV 252
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 26.9 bits (60), Expect = 8.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 206 ATGNSANQAIQLLIEKGVPESHII 229
+T + A+ L GVP + I+
Sbjct: 270 STPFNTQTALDLYRAGGVPANKIV 293
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 26.6 bits (59), Expect = 9.5
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 206 ATGNSANQAIQLLIEKGVPESHII 229
A SA+ + + G+ S +
Sbjct: 250 ADKYSADFVVNNYLAAGLKPSQMN 273
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.143 0.426
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,582,042
Number of extensions: 292306
Number of successful extensions: 896
Number of sequences better than 10.0: 1
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 84
Length of query: 283
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 191
Effective length of database: 4,133,061
Effective search space: 789414651
Effective search space used: 789414651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)