RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023344
(283 letters)
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId:
5811]}
Length = 224
Score = 226 bits (577), Expect = 7e-75
Identities = 114/217 (52%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 66 HDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEK 125
D+ +PNV +++ T Q+R M T+IRD+ K +FVFY+DRLIRL++E L LPF +K
Sbjct: 7 QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKK 66
Query: 126 QVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGK-QL 184
+V TP Y GV F K+CGVSIVR+GESME+ LRA C+G++IGKILI RD + +L
Sbjct: 67 EVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKL 126
Query: 185 IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 244
IYEKLP DI ER V+LLDP+ AT S +AI++L+ GV E IIF+N+++AP+GI V
Sbjct: 127 IYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVF 186
Query: 245 KRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGT 281
K +P +++VT+ +D+ LN + ++PG+G+FGDRYFGT
Sbjct: 187 KEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
[TaxId: 1394]}
Length = 208
Score = 190 bits (484), Expect = 3e-61
Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 4/208 (1%)
Query: 75 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 134
VYV I+ T IRD+ +F D + L+ LP E ++ TP
Sbjct: 3 VYVFDHPL-IQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSKA 61
Query: 135 YTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGK-QLIYEKLPNDI 193
V KKL + I+R+G M + + K+G I ++RD K Y KLP+D+
Sbjct: 62 RAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSDV 121
Query: 194 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIV 253
ER +++DP+LATG SA AI L ++G I F+ LI+APEG+ V P + I
Sbjct: 122 EERDFIIVDPMLATGGSAVAAIDALKKRGAK--SIKFMCLIAAPEGVKAVETAHPDVDIY 179
Query: 254 TSEIDVALNEEFRVIPGLGEFGDRYFGT 281
+ +D LN+ ++PGLG+ GDR FGT
Sbjct: 180 IAALDERLNDHGYIVPGLGDAGDRLFGT 207
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
[TaxId: 274]}
Length = 208
Score = 190 bits (483), Expect = 6e-61
Identities = 66/209 (31%), Positives = 109/209 (52%), Gaps = 4/209 (1%)
Query: 74 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGS 133
+ ++ ++ +RD+ DF ++ + L+ + L E V TP
Sbjct: 2 RITLVDHPL-VQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAP 60
Query: 134 MYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQ-LIYEKLPND 192
V KKL V+I+R+G M + ++G I ++RD ++ Y KLP D
Sbjct: 61 ARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPD 120
Query: 193 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKI 252
I+ER LLDP+LATG SA+ A+ LL E+G + + + +++APEG+ + K P ++
Sbjct: 121 IAERRAFLLDPMLATGGSASLALSLLKERG--ATGVKLMAILAAPEGLERIAKDHPDTEV 178
Query: 253 VTSEIDVALNEEFRVIPGLGEFGDRYFGT 281
V + ID LN+ ++PGLG+ GDR +GT
Sbjct: 179 VVAAIDERLNDHGYIVPGLGDAGDRIYGT 207
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
[TaxId: 2336]}
Length = 210
Score = 181 bits (461), Expect = 1e-57
Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 4/209 (1%)
Query: 74 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGS 133
N+ V+ I+ T++RD+ +F + L+ HL E +V TP
Sbjct: 4 NLVVVDHPL-IKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPITK 62
Query: 134 MYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQ-LIYEKLPND 192
K + V I+R+G M + + +G I I+RD + + Y KLP
Sbjct: 63 TIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPL 122
Query: 193 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKI 252
++ V LLDP+LATG S+ +AI++L E G I + LI+APEG+ V K++ +KI
Sbjct: 123 NDDKEVFLLDPMLATGVSSIKAIEILKENGAK--KITLVALIAAPEGVEAVEKKYEDVKI 180
Query: 253 VTSEIDVALNEEFRVIPGLGEFGDRYFGT 281
+ +D LN+ +IPGLG+ GDR F T
Sbjct: 181 YVAALDERLNDHGYIIPGLGDAGDRLFRT 209
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 215
Score = 171 bits (435), Expect = 1e-53
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 14/217 (6%)
Query: 75 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 134
+YVI + T +RD+ + +F RL R++ L + +V TP G
Sbjct: 2 LYVIDKPI-TLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVK 60
Query: 135 YTGVDFC--KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQ--------L 184
GVD + ++I+R+ + L + G I R +GK+ +
Sbjct: 61 TKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYI 120
Query: 185 IYEKLPNDISE-RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCV 243
Y+K+P+ ++ +V++ DP++AT ++ + ++ +++ I +++IS+ G++ +
Sbjct: 121 YYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANP--KRIYIVSIISSEYGVNKI 178
Query: 244 CKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFG 280
++P + + T ID LN + ++PGLG+ GDR FG
Sbjct: 179 LSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 215
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 80.0 bits (197), Expect = 5e-18
Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 38/130 (29%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY-----------------ADVIIP 43
++KI V ++ ++I RD RG ++V + D+
Sbjct: 147 ADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQ 206
Query: 44 RGGDNHVAIDLIVQHIHTKLGQHDLCKI---------------------YPNVYVIQSTF 82
R + I + I T + + N V+
Sbjct: 207 RVPVVDTSNPFIARWIPTADESVVVIRFRNPRGIDFPYLTSMIHGSWMSRANSIVVPGNK 266
Query: 83 QIRGMHTLIR 92
M ++
Sbjct: 267 LDLAMQLILT 276
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 59.2 bits (142), Expect = 4e-11
Identities = 42/81 (51%), Positives = 50/81 (61%), Gaps = 18/81 (22%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLE------------------QYADVII 42
MK+FVDTDAD RL+RR+ RD ERGRD++ +L +YADVII
Sbjct: 131 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 190
Query: 43 PRGGDNHVAIDLIVQHIHTKL 63
PRG DN VAI+LIVQHI L
Sbjct: 191 PRGADNLVAINLIVQHIQDIL 211
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 40.5 bits (94), Expect = 1e-04
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 37/87 (42%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERG---RDVDSVLEQY-------------------- 37
++ I+VD D+ I R R D DS Y
Sbjct: 215 VDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEIN 274
Query: 38 --------------ADVIIPRGGDNHV 50
A +I+ + ++ V
Sbjct: 275 WLNLKQNILPTRERASLILTKSANHAV 301
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426
(TTHA1462) {Thermus thermophilus [TaxId: 274]}
Length = 208
Score = 36.6 bits (84), Expect = 0.002
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 180 NGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG 239
++ + R V+L+D +ATG S A+ ++ ++G ++ +++PE
Sbjct: 105 RAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRR--VVVAVPVASPEA 162
Query: 240 I 240
+
Sbjct: 163 V 163
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 34.6 bits (79), Expect = 0.006
Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 7/139 (5%)
Query: 95 GISKHDFVFYSD-RLIRLVVEHGLGHLPFTEKQVVTP-TGSMYTGVDFCKKLCGVSIVRS 152
G F D R E +P + + T T + + L +V
Sbjct: 22 GRRIPLVEFLGDPEFTRAAAEALRPLVPKEAEILFTTETSPIPLTHVLAEALGLPYVV-- 79
Query: 153 GESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSAN 212
R + I ++ G + + + + V+L+ V+A+G +
Sbjct: 80 ---ARRRRRPYMEDPIIQEVQTLTLGVGEVLWLDRRFAEKLLNQRVVLVSDVVASGETMR 136
Query: 213 QAIQLLIEKGVPESHIIFL 231
++++ G + +
Sbjct: 137 AMEKMVLRAGGHVVARLAV 155
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 31.6 bits (71), Expect = 0.065
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 196 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231
+V+++D ++ATG SA A +L+ + F+
Sbjct: 123 SNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFV 158
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 31.2 bits (70), Expect = 0.11
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 175 HRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL--- 231
+ +++ + + V+L+D VLATG +A +QL+ ++ +
Sbjct: 118 KEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSI 177
Query: 232 -------NLISAPEGIHCVCKRFPSLKIVTSEIDVALNE-EFRVIPGLGEFGDR 277
+ S + K F SL + + + + P + GD
Sbjct: 178 PFLKAAEKIHSTANSRYKDIK-FISLLSDDALTEENCGDSKNYTGPRVLSCGDV 230
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 30.5 bits (67), Expect = 0.16
Identities = 5/40 (12%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYADV 40
+ +++D ++R AR + +++ + +Y
Sbjct: 144 FDFVVYLDCPREIRFARENDQ----VKQNIQKFINRYWKA 179
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 181
Score = 30.4 bits (68), Expect = 0.17
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 197 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPE 238
VLL D VLATG + AI+L GV +I L
Sbjct: 118 VVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLYEIEA 159
>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 178
Score = 29.6 bits (66), Expect = 0.31
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 196 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231
+ V+++D +LATG + N A +LL + L
Sbjct: 119 QRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSL 154
>d1vdma1 c.61.1.1 (A:1-153) Pprobable purine
phosphoribosyltransferase PH0095 {Pyrococcus horikoshii
[TaxId: 53953]}
Length = 153
Score = 29.4 bits (65), Expect = 0.32
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 175 HRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 231
D K +I + D+ ++ V+++D V TG + I+ + + G E I L
Sbjct: 63 GIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACL 119
>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus
subtilis [TaxId: 1423]}
Length = 178
Score = 29.3 bits (65), Expect = 0.37
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 173 LIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 226
L + ++ + +P DI+++ V+L+D VL TG + + L++ G P S
Sbjct: 74 LSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSS 127
>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus
subtilis [TaxId: 1423]}
Length = 164
Score = 28.9 bits (64), Expect = 0.41
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 5 IFVDTDADVRLAR-RIRRDTVERGRDVDSVLEQYADVI 41
+++ D V R R+R D G+D+DS+LE Y +V+
Sbjct: 98 VYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVM 135
>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 144
Score = 26.0 bits (57), Expect = 3.3
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQ 36
+N+ + + I RD + + +
Sbjct: 24 INIFKLPASGPAREASFVISRDASQGDAPFADYVAR 59
>d2fufa1 d.89.1.1 (A:131-256) The origin DNA-binding domain of SV40
T-antigen {Simian virus 40, Sv40 [TaxId: 10633]}
Length = 126
Score = 25.9 bits (57), Expect = 3.6
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 127 VVTPTGSMYTGV-DFCKKLCGVSIVRSGESMENALRACCKGIK 168
+TP + + ++ +KLC S + CKG+
Sbjct: 67 FLTPHRHRVSAINNYAQKLCTFSFL------------ICKGVN 97
>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 291
Score = 26.4 bits (57), Expect = 3.7
Identities = 33/211 (15%), Positives = 59/211 (27%), Gaps = 25/211 (11%)
Query: 40 VIIPRGGDNHVAIDLIVQHIHTKLGQHDLC---KIYPNVYVIQSTFQIRGMHTLIRDRGI 96
++ GG + L I ++ ++ R + LI G
Sbjct: 60 PVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGP 119
Query: 97 SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYT-----------GVDFCKKLC 145
+L V T+ +V + T
Sbjct: 120 YAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAP 179
Query: 146 GVSIVRSGESMENALRACCKGIKIGKI--LIHRDGDNGKQLIYEKLPNDISERHVLLLDP 203
V + + A A + + K+ L DG + + L ++I + L P
Sbjct: 180 DADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLP 239
Query: 204 VLATG-----NSANQAIQLLIEKGVPESHII 229
L G + +A+ GVP +HII
Sbjct: 240 TLELGMVPKVEACLRAV----IGGVPSAHII 266
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.143 0.426
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,100,779
Number of extensions: 53078
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 29
Length of query: 283
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,254,276
Effective search space: 249600924
Effective search space used: 249600924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.4 bits)