Query 023346
Match_columns 283
No_of_seqs 307 out of 2769
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:19:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11204 N-glycosyltransferase 100.0 1.2E-27 2.6E-32 217.3 18.9 124 63-196 51-174 (420)
2 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 1.1E-27 2.4E-32 217.9 17.8 124 63-194 46-169 (439)
3 PRK14583 hmsR N-glycosyltransf 100.0 4.6E-27 1E-31 214.4 19.1 122 64-195 73-194 (444)
4 PRK10018 putative glycosyl tra 99.9 9.1E-27 2E-31 199.0 15.5 120 64-193 3-122 (279)
5 TIGR03472 HpnI hopanoid biosyn 99.9 1.7E-26 3.6E-31 206.3 17.7 120 64-192 39-161 (373)
6 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 3.1E-26 6.8E-31 187.2 14.2 119 66-194 1-121 (202)
7 cd02520 Glucosylceramide_synth 99.9 1.8E-26 4E-31 188.2 12.1 109 66-182 1-112 (196)
8 PRK10063 putative glycosyl tra 99.9 2.8E-26 6E-31 193.5 12.1 118 66-193 1-118 (248)
9 TIGR03469 HonB hopene-associat 99.9 5.5E-26 1.2E-30 203.6 14.6 116 63-186 37-163 (384)
10 cd04195 GT2_AmsE_like GT2_AmsE 99.9 9.5E-26 2E-30 184.3 13.2 120 69-199 1-123 (201)
11 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 2E-25 4.4E-30 193.8 14.8 111 69-187 1-114 (299)
12 cd06427 CESA_like_2 CESA_like_ 99.9 4.4E-26 9.5E-31 191.9 10.3 115 66-189 1-118 (241)
13 PTZ00260 dolichyl-phosphate be 99.9 3.1E-24 6.7E-29 188.2 21.8 132 62-193 66-201 (333)
14 PRK10073 putative glycosyl tra 99.9 2.6E-25 5.6E-30 194.9 14.7 112 65-187 5-116 (328)
15 cd06437 CESA_CaSu_A2 Cellulose 99.9 2.7E-25 5.9E-30 186.0 12.9 121 66-194 1-124 (232)
16 cd06913 beta3GnTL1_like Beta 1 99.9 1.3E-25 2.9E-30 186.2 10.5 110 70-187 1-115 (219)
17 PLN02726 dolichyl-phosphate be 99.9 5.5E-25 1.2E-29 185.5 13.2 122 64-192 7-128 (243)
18 PRK11498 bcsA cellulose syntha 99.9 2.1E-24 4.6E-29 205.9 16.9 117 63-192 257-375 (852)
19 cd04196 GT_2_like_d Subfamily 99.9 2.1E-24 4.6E-29 177.7 13.9 121 69-198 1-121 (214)
20 cd04187 DPM1_like_bac Bacteria 99.9 1.3E-24 2.9E-29 174.8 10.4 108 70-184 1-108 (181)
21 cd06433 GT_2_WfgS_like WfgS an 99.9 2.5E-24 5.5E-29 175.2 12.1 116 69-197 1-116 (202)
22 cd06421 CESA_CelA_like CESA_Ce 99.9 4.4E-24 9.6E-29 178.4 11.0 117 66-193 1-121 (234)
23 TIGR03030 CelA cellulose synth 99.9 4.2E-23 9.2E-28 197.5 17.6 121 63-192 128-264 (713)
24 KOG2977 Glycosyltransferase [G 99.9 5.7E-23 1.2E-27 168.0 15.1 202 12-229 12-215 (323)
25 cd06435 CESA_NdvC_like NdvC_li 99.9 1.6E-23 3.4E-28 175.6 12.0 114 69-192 1-119 (236)
26 cd04192 GT_2_like_e Subfamily 99.9 1E-23 2.2E-28 175.4 9.7 109 70-187 1-113 (229)
27 cd02525 Succinoglycan_BP_ExoA 99.9 5.9E-23 1.3E-27 173.0 13.4 108 67-185 1-110 (249)
28 cd06420 GT2_Chondriotin_Pol_N 99.9 1.2E-22 2.5E-27 163.4 13.0 104 70-181 1-104 (182)
29 PF13641 Glyco_tranf_2_3: Glyc 99.9 1.8E-24 3.9E-29 180.3 2.5 120 66-194 1-123 (228)
30 PF00535 Glycos_transf_2: Glyc 99.9 4E-22 8.7E-27 157.1 12.5 111 69-189 1-111 (169)
31 cd06438 EpsO_like EpsO protein 99.9 7.5E-23 1.6E-27 165.0 8.4 104 70-186 1-111 (183)
32 cd04185 GT_2_like_b Subfamily 99.9 2.1E-22 4.6E-27 164.8 10.8 107 70-188 1-110 (202)
33 cd06423 CESA_like CESA_like is 99.9 4.4E-22 9.5E-27 157.7 11.8 121 70-199 1-121 (180)
34 cd06439 CESA_like_1 CESA_like_ 99.9 1.8E-21 3.9E-26 164.5 15.0 123 61-196 24-148 (251)
35 COG1215 Glycosyltransferases, 99.9 5.3E-21 1.1E-25 174.5 18.2 114 65-187 53-168 (439)
36 PRK10714 undecaprenyl phosphat 99.9 3.8E-21 8.3E-26 168.3 16.2 116 64-185 4-119 (325)
37 cd02522 GT_2_like_a GT_2_like_ 99.9 1.7E-21 3.6E-26 161.5 12.7 101 68-185 1-101 (221)
38 cd04179 DPM_DPG-synthase_like 99.9 8.4E-22 1.8E-26 158.7 9.7 108 70-185 1-108 (185)
39 cd06434 GT2_HAS Hyaluronan syn 99.9 4.3E-22 9.4E-27 166.6 8.0 115 67-196 1-116 (235)
40 cd06442 DPM1_like DPM1_like re 99.9 5E-21 1.1E-25 158.9 13.8 107 70-186 1-108 (224)
41 cd04188 DPG_synthase DPG_synth 99.9 4.3E-21 9.2E-26 158.2 13.2 112 70-186 1-112 (211)
42 cd04186 GT_2_like_c Subfamily 99.9 2.1E-21 4.5E-26 153.2 10.2 106 70-188 1-106 (166)
43 PRK14716 bacteriophage N4 adso 99.9 6.6E-21 1.4E-25 174.0 13.8 111 62-181 62-183 (504)
44 PF10111 Glyco_tranf_2_2: Glyc 99.9 1.1E-20 2.4E-25 162.4 14.1 118 69-191 1-126 (281)
45 PRK13915 putative glucosyl-3-p 99.9 6.8E-21 1.5E-25 165.1 12.5 124 63-193 28-153 (306)
46 cd02526 GT2_RfbF_like RfbF is 99.8 5.8E-21 1.3E-25 159.9 9.4 105 70-190 1-112 (237)
47 cd06436 GlcNAc-1-P_transferase 99.8 3.4E-20 7.4E-25 150.6 11.4 110 70-192 1-124 (191)
48 COG1216 Predicted glycosyltran 99.8 7.9E-20 1.7E-24 159.1 12.5 124 65-200 2-128 (305)
49 KOG2978 Dolichol-phosphate man 99.8 1.1E-19 2.5E-24 140.0 10.9 115 66-185 3-117 (238)
50 cd02511 Beta4Glucosyltransfera 99.8 2.2E-19 4.9E-24 150.0 12.7 102 67-187 1-102 (229)
51 PRK11234 nfrB bacteriophage N4 99.8 1.3E-17 2.9E-22 158.3 19.2 115 59-183 56-181 (727)
52 COG0463 WcaA Glycosyltransfera 99.8 3.2E-18 7E-23 139.4 13.0 107 65-182 2-108 (291)
53 cd04190 Chitin_synth_C C-termi 99.8 5.5E-19 1.2E-23 149.0 7.8 103 70-196 1-113 (244)
54 TIGR01556 rhamnosyltran L-rham 99.8 1.8E-18 4E-23 148.8 10.9 97 74-185 2-102 (281)
55 PRK05454 glucosyltransferase M 99.7 2.5E-16 5.3E-21 148.9 21.6 124 62-193 120-257 (691)
56 cd04191 Glucan_BSP_ModH Glucan 99.7 7.5E-17 1.6E-21 136.2 15.1 124 68-194 1-133 (254)
57 cd00761 Glyco_tranf_GTA_type G 99.7 3.2E-16 6.8E-21 120.9 11.0 109 70-188 1-109 (156)
58 PRK15489 nfrB bacteriophage N4 99.7 1.8E-15 3.9E-20 142.3 17.4 114 62-185 67-191 (703)
59 KOG2547 Ceramide glucosyltrans 99.5 2.7E-12 5.9E-17 109.3 15.3 130 63-200 82-214 (431)
60 KOG3738 Predicted polypeptide 99.4 1.2E-12 2.5E-17 112.4 8.3 113 64-188 122-236 (559)
61 KOG3736 Polypeptide N-acetylga 99.4 8.4E-13 1.8E-17 120.7 7.2 127 63-198 139-267 (578)
62 cd02514 GT13_GLCNAC-TI GT13_GL 99.4 8E-12 1.7E-16 108.4 12.2 110 68-188 2-132 (334)
63 KOG3737 Predicted polypeptide 99.2 3.2E-11 7E-16 103.5 7.1 118 62-186 151-270 (603)
64 COG2943 MdoH Membrane glycosyl 98.8 7E-07 1.5E-11 80.1 17.4 130 67-200 145-284 (736)
65 COG4092 Predicted glycosyltran 98.7 1.7E-07 3.8E-12 76.9 9.1 111 66-181 2-119 (346)
66 PF13506 Glyco_transf_21: Glyc 98.5 1.2E-07 2.6E-12 75.7 3.4 59 134-193 5-67 (175)
67 PF13704 Glyco_tranf_2_4: Glyc 98.5 8.9E-07 1.9E-11 63.4 7.5 82 75-172 1-87 (97)
68 PF13712 Glyco_tranf_2_5: Glyc 98.2 4E-06 8.6E-11 69.3 5.8 87 68-189 1-88 (217)
69 PF03142 Chitin_synth_2: Chiti 98.1 6.8E-05 1.5E-09 69.2 13.2 127 65-197 24-242 (527)
70 PF05679 CHGN: Chondroitin N-a 98.0 0.00018 4E-09 66.7 14.7 117 63-184 244-369 (499)
71 KOG3588 Chondroitin synthase 1 97.9 9.1E-05 2E-09 63.9 9.4 109 62-180 225-337 (494)
72 PF03071 GNT-I: GNT-I family; 97.8 0.00021 4.6E-09 64.1 10.3 109 63-182 90-217 (434)
73 PLN02893 Cellulose synthase-li 97.8 0.0004 8.8E-09 66.1 12.3 41 143-183 281-326 (734)
74 PF03452 Anp1: Anp1; InterPro 97.6 0.0014 2.9E-08 55.4 12.5 125 62-197 21-179 (269)
75 cd00899 b4GalT Beta-4-Galactos 97.6 0.00015 3.3E-09 59.3 6.5 79 67-175 3-85 (219)
76 PF09488 Osmo_MPGsynth: Mannos 97.5 0.0027 5.8E-08 55.1 12.9 104 67-183 51-185 (381)
77 PF13632 Glyco_trans_2_3: Glyc 97.4 0.00013 2.8E-09 58.9 2.8 37 159-196 1-37 (193)
78 PF06306 CgtA: Beta-1,4-N-acet 97.3 0.0015 3.2E-08 55.7 8.8 103 64-178 85-197 (347)
79 PF11316 Rhamno_transf: Putati 97.3 0.0037 8.1E-08 52.1 10.5 82 99-183 54-141 (234)
80 PLN02195 cellulose synthase A 97.0 0.015 3.2E-07 57.1 13.2 40 144-183 437-481 (977)
81 PLN02638 cellulose synthase A 96.9 0.025 5.3E-07 56.1 14.0 40 144-183 534-578 (1079)
82 TIGR02460 osmo_MPGsynth mannos 96.9 0.015 3.3E-07 50.3 11.1 105 66-183 50-185 (381)
83 PRK14503 mannosyl-3-phosphogly 96.9 0.015 3.2E-07 50.6 11.0 105 66-183 51-186 (393)
84 PLN02190 cellulose synthase-li 96.8 0.017 3.7E-07 55.2 11.8 41 144-184 270-315 (756)
85 PF03214 RGP: Reversibly glyco 96.8 0.0019 4.2E-08 55.4 4.4 104 67-188 9-123 (348)
86 PF11735 CAP59_mtransfer: Cryp 96.6 0.086 1.9E-06 44.1 13.3 110 68-182 2-137 (241)
87 cd02540 GT2_GlmU_N_bac N-termi 96.4 0.037 8E-07 45.7 9.7 97 71-185 20-119 (229)
88 PF13733 Glyco_transf_7N: N-te 96.3 0.018 3.9E-07 43.2 6.7 79 64-172 45-127 (136)
89 PF12804 NTP_transf_3: MobA-li 96.3 0.024 5.2E-07 44.1 8.0 96 72-187 19-117 (160)
90 cd00218 GlcAT-I Beta1,3-glucur 96.3 0.089 1.9E-06 43.2 11.2 99 66-178 1-117 (223)
91 PRK14502 bifunctional mannosyl 96.2 0.066 1.4E-06 51.1 11.1 105 66-183 55-190 (694)
92 KOG2571 Chitin synthase/hyalur 96.1 0.031 6.6E-07 54.4 8.9 58 144-201 426-485 (862)
93 KOG1476 Beta-1,3-glucuronyltra 96.1 0.14 3.1E-06 43.8 11.8 106 65-183 86-207 (330)
94 cd04182 GT_2_like_f GT_2_like_ 96.1 0.059 1.3E-06 42.8 9.4 94 76-186 24-121 (186)
95 TIGR03202 pucB xanthine dehydr 96.1 0.15 3.2E-06 40.9 11.7 98 76-186 24-126 (190)
96 PLN02458 transferase, transfer 96.1 0.13 2.9E-06 44.4 11.5 103 64-178 110-224 (346)
97 TIGR03310 matur_ygfJ molybdenu 96.0 0.1 2.3E-06 41.6 10.6 96 76-187 23-121 (188)
98 PLN02436 cellulose synthase A 95.9 0.27 5.8E-06 49.1 14.3 40 144-183 550-594 (1094)
99 PLN02400 cellulose synthase 95.9 0.18 4E-06 50.3 13.2 40 144-183 541-585 (1085)
100 PLN02189 cellulose synthase 95.9 0.084 1.8E-06 52.4 10.7 52 132-183 499-560 (1040)
101 KOG3916 UDP-Gal:glucosylcerami 95.6 0.12 2.5E-06 44.8 9.3 78 65-172 150-231 (372)
102 PF01697 Glyco_transf_92: Glyc 95.6 0.076 1.6E-06 45.5 8.5 109 68-186 3-137 (285)
103 PF04666 Glyco_transf_54: N-Ac 95.6 0.38 8.2E-06 41.6 12.5 117 64-186 50-199 (297)
104 cd04181 NTP_transferase NTP_tr 95.3 0.19 4.1E-06 41.0 9.8 99 73-185 25-123 (217)
105 PRK00317 mobA molybdopterin-gu 95.1 0.35 7.5E-06 38.9 10.6 55 132-186 62-119 (193)
106 COG2068 Uncharacterized MobA-r 94.8 0.57 1.2E-05 37.8 10.6 95 74-184 27-125 (199)
107 PF09258 Glyco_transf_64: Glyc 94.8 0.033 7.1E-07 47.0 3.6 110 68-192 1-111 (247)
108 PLN03180 reversibly glycosylat 94.5 0.036 7.8E-07 47.9 3.3 88 65-172 10-109 (346)
109 cd02503 MobA MobA catalyzes th 94.5 0.26 5.6E-06 39.1 8.2 84 76-181 24-109 (181)
110 cd02518 GT2_SpsF SpsF is a gly 94.5 0.75 1.6E-05 38.2 11.3 97 76-187 22-119 (233)
111 PLN02917 CMP-KDO synthetase 94.4 1.1 2.4E-05 38.8 12.4 53 132-185 108-165 (293)
112 cd06915 NTP_transferase_WcbM_l 94.2 0.52 1.1E-05 38.5 9.7 93 78-184 29-122 (223)
113 KOG1413 N-acetylglucosaminyltr 94.1 0.62 1.4E-05 40.7 9.9 114 63-182 64-193 (411)
114 TIGR01173 glmU UDP-N-acetylglu 93.6 0.55 1.2E-05 43.1 9.6 96 71-184 22-119 (451)
115 cd06425 M1P_guanylylT_B_like_N 93.4 0.66 1.4E-05 38.5 8.9 102 71-187 25-130 (233)
116 PF00483 NTP_transferase: Nucl 93.4 0.21 4.5E-06 41.8 5.9 103 71-187 24-132 (248)
117 cd06422 NTP_transferase_like_1 93.3 0.89 1.9E-05 37.3 9.4 97 71-182 24-121 (221)
118 COG1213 Predicted sugar nucleo 93.3 0.32 7E-06 40.2 6.5 90 76-180 29-120 (239)
119 PLN02248 cellulose synthase-li 93.1 0.15 3.3E-06 50.9 5.2 40 144-183 603-647 (1135)
120 PRK02726 molybdopterin-guanine 93.0 0.69 1.5E-05 37.5 8.2 53 132-184 67-121 (200)
121 PRK14360 glmU bifunctional N-a 92.9 0.94 2E-05 41.6 10.0 100 71-187 23-125 (450)
122 COG1209 RfbA dTDP-glucose pyro 92.9 2.1 4.5E-05 36.3 10.8 102 71-189 25-130 (286)
123 PRK14355 glmU bifunctional N-a 92.9 1.2 2.7E-05 41.0 10.7 98 71-185 25-125 (459)
124 cd04189 G1P_TT_long G1P_TT_lon 92.8 1.9 4.1E-05 35.7 10.8 100 71-184 25-124 (236)
125 PF11397 GlcNAc: Glycosyltrans 92.8 2.2 4.8E-05 37.8 11.5 112 68-186 2-146 (343)
126 PRK00155 ispD 2-C-methyl-D-ery 92.6 3 6.6E-05 34.3 11.8 95 76-185 29-125 (227)
127 PRK15480 glucose-1-phosphate t 92.6 1.6 3.4E-05 37.8 10.3 99 71-185 28-130 (292)
128 cd02523 PC_cytidylyltransferas 92.5 0.93 2E-05 37.4 8.6 90 71-178 23-114 (229)
129 TIGR01207 rmlA glucose-1-phosp 92.5 1.9 4.1E-05 37.2 10.6 99 71-184 24-125 (286)
130 PRK13385 2-C-methyl-D-erythrit 92.4 0.88 1.9E-05 37.7 8.3 96 76-185 28-127 (230)
131 cd02516 CDP-ME_synthetase CDP- 92.4 1 2.2E-05 36.8 8.6 96 76-185 26-125 (218)
132 TIGR03552 F420_cofC 2-phospho- 92.3 1.2 2.7E-05 35.7 8.9 51 132-183 65-118 (195)
133 cd02517 CMP-KDO-Synthetase CMP 92.3 2.9 6.3E-05 34.7 11.4 90 76-184 24-118 (239)
134 cd06428 M1P_guanylylT_A_like_N 92.2 1.5 3.2E-05 37.0 9.5 104 71-186 25-131 (257)
135 TIGR02665 molyb_mobA molybdopt 91.9 1.2 2.7E-05 35.3 8.3 52 133-184 62-116 (186)
136 cd02513 CMP-NeuAc_Synthase CMP 91.7 3.4 7.4E-05 33.7 11.0 43 142-184 78-126 (223)
137 TIGR00454 conserved hypothetic 91.7 2.6 5.6E-05 33.7 9.9 94 76-187 25-120 (183)
138 PRK13368 3-deoxy-manno-octulos 91.4 5.5 0.00012 33.0 12.0 92 76-186 25-119 (238)
139 TIGR00453 ispD 2-C-methyl-D-er 91.2 3.3 7.3E-05 33.8 10.4 93 76-184 25-119 (217)
140 PRK14358 glmU bifunctional N-a 91.2 1.7 3.6E-05 40.5 9.4 99 71-187 29-130 (481)
141 cd02538 G1P_TT_short G1P_TT_sh 91.2 4.7 0.0001 33.5 11.4 95 77-183 30-125 (240)
142 PRK14352 glmU bifunctional N-a 91.2 2.1 4.6E-05 39.8 10.2 100 71-186 26-129 (482)
143 PLN03183 acetylglucosaminyltra 91.2 11 0.00023 34.5 14.1 97 62-170 74-187 (421)
144 PRK14353 glmU bifunctional N-a 91.0 1.5 3.3E-05 40.2 9.0 97 71-183 27-126 (446)
145 PRK05450 3-deoxy-manno-octulos 90.7 4 8.6E-05 34.0 10.6 89 76-184 25-119 (245)
146 TIGR03584 PseF pseudaminic aci 90.7 3.6 7.8E-05 34.0 10.1 44 141-184 75-123 (222)
147 PF03552 Cellulose_synt: Cellu 90.4 0.69 1.5E-05 44.5 6.2 53 131-183 166-228 (720)
148 cd02509 GDP-M1P_Guanylyltransf 90.0 4.9 0.00011 34.4 10.6 95 71-179 26-126 (274)
149 PRK14354 glmU bifunctional N-a 89.9 3.2 6.8E-05 38.3 10.1 95 71-184 24-121 (458)
150 cd02508 ADP_Glucose_PP ADP-glu 89.8 2.7 5.8E-05 33.9 8.5 104 71-186 23-139 (200)
151 PRK14356 glmU bifunctional N-a 89.3 2.3 5E-05 39.1 8.7 90 76-182 31-124 (456)
152 cd06426 NTP_transferase_like_2 89.3 2.9 6.3E-05 34.1 8.5 99 71-186 23-123 (220)
153 cd02541 UGPase_prokaryotic Pro 89.1 4.1 8.9E-05 34.5 9.6 55 132-186 94-150 (267)
154 TIGR00466 kdsB 3-deoxy-D-manno 88.9 12 0.00025 31.3 11.9 88 76-183 22-115 (238)
155 TIGR01099 galU UTP-glucose-1-p 88.4 7.8 0.00017 32.6 10.8 56 132-187 94-151 (260)
156 cd04198 eIF-2B_gamma_N The N-t 88.3 9.2 0.0002 31.2 10.8 100 71-186 25-129 (214)
157 cd04183 GT2_BcE_like GT2_BcbE_ 88.3 4.8 0.0001 33.1 9.3 96 71-181 23-121 (231)
158 COG2266 GTP:adenosylcobinamide 88.2 11 0.00025 29.7 10.5 71 103-182 41-112 (177)
159 PRK14489 putative bifunctional 87.8 2.4 5.1E-05 38.0 7.4 44 142-185 78-122 (366)
160 PRK09382 ispDF bifunctional 2- 87.6 5.5 0.00012 35.8 9.6 93 76-184 31-124 (378)
161 KOG3917 Beta-1,4-galactosyltra 87.5 1.9 4.2E-05 35.3 5.9 82 59-170 67-150 (310)
162 cd06431 GT8_LARGE_C LARGE cata 87.5 4.2 9.2E-05 34.9 8.5 105 67-181 2-121 (280)
163 TIGR01208 rmlA_long glucose-1- 87.5 6 0.00013 35.1 9.9 100 73-186 26-126 (353)
164 PF01762 Galactosyl_T: Galacto 87.3 6.9 0.00015 31.4 9.3 79 101-181 18-105 (195)
165 PF03360 Glyco_transf_43: Glyc 87.2 1.8 3.9E-05 35.3 5.7 68 103-177 10-98 (207)
166 COG0746 MobA Molybdopterin-gua 86.9 3.7 8E-05 33.2 7.4 54 132-185 61-116 (192)
167 cd02524 G1P_cytidylyltransfera 86.9 8.8 0.00019 32.2 10.1 45 141-186 101-146 (253)
168 PRK14357 glmU bifunctional N-a 86.5 6.3 0.00014 36.2 9.8 96 71-186 22-119 (448)
169 COG1208 GCD1 Nucleoside-diphos 86.4 11 0.00023 33.8 10.8 98 71-184 26-125 (358)
170 TIGR01105 galF UTP-glucose-1-p 86.2 13 0.00028 32.2 11.0 53 132-185 98-158 (297)
171 PRK09451 glmU bifunctional N-a 85.3 5.9 0.00013 36.5 9.0 94 71-182 27-122 (456)
172 PF07507 WavE: WavE lipopolysa 84.7 5.1 0.00011 35.0 7.6 97 76-184 17-123 (311)
173 PF11051 Mannosyl_trans3: Mann 84.4 6.7 0.00015 33.5 8.3 100 69-176 3-112 (271)
174 PF02348 CTP_transf_3: Cytidyl 84.3 21 0.00044 29.0 12.4 92 78-187 24-120 (217)
175 PF13896 Glyco_transf_49: Glyc 84.2 1.3 2.9E-05 38.7 3.9 43 142-184 113-155 (317)
176 TIGR02623 G1P_cyt_trans glucos 84.0 15 0.00034 30.8 10.3 46 140-186 101-146 (254)
177 COG1211 IspD 4-diphosphocytidy 83.6 15 0.00032 30.7 9.5 94 75-182 29-126 (230)
178 PF02485 Branch: Core-2/I-Bran 83.3 9.6 0.00021 31.7 8.7 104 68-184 1-115 (244)
179 PLN02728 2-C-methyl-D-erythrit 81.4 13 0.00028 31.5 8.7 78 103-186 68-148 (252)
180 PLN02915 cellulose synthase A 81.0 5.8 0.00013 40.0 7.2 55 64-124 285-343 (1044)
181 PF01644 Chitin_synth_1: Chiti 80.5 26 0.00056 27.5 10.3 42 140-181 118-163 (163)
182 PRK10122 GalU regulator GalF; 80.2 33 0.00071 29.7 11.0 54 132-186 98-159 (297)
183 PLN02189 cellulose synthase 79.9 5.8 0.00013 40.0 6.8 55 64-124 329-387 (1040)
184 cd04197 eIF-2B_epsilon_N The N 79.6 23 0.0005 28.8 9.6 101 71-184 25-130 (217)
185 KOG1022 Acetylglucosaminyltran 79.0 5.4 0.00012 37.0 5.8 116 64-194 441-557 (691)
186 cd00505 Glyco_transf_8 Members 78.1 21 0.00046 29.8 9.0 94 76-179 11-117 (246)
187 TIGR01479 GMP_PMI mannose-1-ph 77.4 28 0.0006 32.4 10.3 97 72-181 27-129 (468)
188 PLN02915 cellulose synthase A 77.0 4 8.8E-05 41.1 4.8 52 131-182 454-515 (1044)
189 PRK13389 UTP--glucose-1-phosph 76.5 45 0.00097 29.0 10.8 105 71-186 33-164 (302)
190 PF01128 IspD: 2-C-methyl-D-er 76.4 41 0.0009 27.8 10.0 92 76-184 26-120 (221)
191 KOG4179 Lysyl hydrolase/glycos 75.0 3.3 7.1E-05 37.1 3.3 109 66-180 3-134 (568)
192 cd06432 GT8_HUGT1_C_like The C 74.4 40 0.00087 28.4 9.7 95 76-180 11-118 (248)
193 cd04194 GT8_A4GalT_like A4GalT 74.3 29 0.00063 28.9 8.9 93 78-179 12-117 (248)
194 PF09837 DUF2064: Uncharacteri 73.9 27 0.00059 25.8 7.6 78 101-184 8-88 (122)
195 PF05060 MGAT2: N-acetylglucos 73.3 34 0.00073 30.5 9.1 53 65-124 30-82 (356)
196 PRK14490 putative bifunctional 69.9 29 0.00062 31.1 8.3 50 132-181 233-284 (369)
197 KOG0799 Branching enzyme [Carb 69.2 34 0.00074 31.5 8.6 103 67-181 104-218 (439)
198 PRK15171 lipopolysaccharide 1, 68.7 70 0.0015 28.2 10.3 105 66-179 24-142 (334)
199 PRK00576 molybdopterin-guanine 66.9 60 0.0013 25.4 9.1 53 132-184 46-103 (178)
200 cd06430 GT8_like_2 GT8_like_2 63.7 87 0.0019 27.3 9.6 108 68-185 3-124 (304)
201 COG1207 GlmU N-acetylglucosami 63.6 82 0.0018 28.8 9.5 80 103-188 45-128 (460)
202 PF09886 DUF2113: Uncharacteri 63.5 77 0.0017 25.5 8.8 94 74-184 78-185 (188)
203 TIGR02091 glgC glucose-1-phosp 63.1 32 0.00069 30.5 7.2 102 71-186 23-139 (361)
204 PLN02248 cellulose synthase-li 62.0 23 0.0005 36.2 6.4 55 64-124 365-423 (1135)
205 COG1210 GalU UDP-glucose pyrop 61.9 51 0.0011 28.2 7.6 57 131-187 97-155 (291)
206 cd02507 eIF-2B_gamma_N_like Th 61.8 43 0.00094 27.3 7.3 96 71-179 25-124 (216)
207 PF01501 Glyco_transf_8: Glyco 56.4 8.7 0.00019 31.7 2.3 75 102-179 29-120 (250)
208 PF02709 Glyco_transf_7C: N-te 56.1 1.8 3.8E-05 29.4 -1.6 22 258-279 28-52 (78)
209 PRK14359 glmU bifunctional N-a 54.3 1.7E+02 0.0037 26.5 10.5 88 72-179 25-116 (430)
210 PRK00844 glgC glucose-1-phosph 52.7 78 0.0017 28.7 8.0 102 71-186 30-145 (407)
211 PF01755 Glyco_transf_25: Glyc 52.2 1.2E+02 0.0026 24.1 9.4 82 101-183 27-112 (200)
212 PRK00725 glgC glucose-1-phosph 51.7 1.3E+02 0.0029 27.4 9.4 102 71-186 40-157 (425)
213 PHA01631 hypothetical protein 49.5 27 0.00058 27.3 3.7 65 103-172 17-87 (176)
214 PRK05293 glgC glucose-1-phosph 49.1 72 0.0016 28.5 7.1 102 71-184 28-143 (380)
215 PLN03153 hypothetical protein; 49.0 2.4E+02 0.0052 26.7 11.1 41 142-182 188-236 (537)
216 COG1861 SpsF Spore coat polysa 48.2 1.6E+02 0.0035 24.5 10.8 101 70-186 21-122 (241)
217 PF15102 TMEM154: TMEM154 prot 46.3 12 0.00026 28.5 1.4 11 68-78 108-118 (146)
218 COG3967 DltE Short-chain dehyd 46.1 33 0.00071 28.2 3.9 54 69-138 31-84 (245)
219 TIGR00334 5S_RNA_mat_M5 ribonu 45.8 94 0.002 24.7 6.3 23 156-180 47-69 (174)
220 KOG2859 DNA repair protein, me 45.3 1.1E+02 0.0024 25.5 6.7 50 132-181 39-96 (293)
221 PF05568 ASFV_J13L: African sw 44.1 73 0.0016 24.3 5.2 30 10-39 33-62 (189)
222 PF09949 DUF2183: Uncharacteri 43.5 1.1E+02 0.0024 21.8 5.9 38 82-130 52-90 (100)
223 PRK13660 hypothetical protein; 42.3 1.8E+02 0.0039 23.3 12.3 103 65-182 71-179 (182)
224 PRK15460 cpsB mannose-1-phosph 41.6 3E+02 0.0066 25.8 11.2 87 72-171 32-124 (478)
225 PRK02862 glgC glucose-1-phosph 41.0 1.6E+02 0.0036 26.9 8.2 101 71-185 28-143 (429)
226 PF04028 DUF374: Domain of unk 40.1 1.1E+02 0.0024 20.4 6.0 59 103-166 9-67 (74)
227 PRK00560 molybdopterin-guanine 39.2 2E+02 0.0043 23.0 7.6 46 133-178 65-113 (196)
228 KOG1971 Lysyl hydroxylase [Pos 39.1 70 0.0015 29.0 5.2 67 113-184 136-203 (415)
229 PLN02241 glucose-1-phosphate a 38.1 2E+02 0.0044 26.3 8.4 102 71-186 28-150 (436)
230 KOG2264 Exostosin EXT1L [Signa 37.0 37 0.0008 32.0 3.2 112 65-193 648-761 (907)
231 KOG1467 Translation initiation 36.0 1.4E+02 0.003 27.9 6.5 58 71-139 362-419 (556)
232 PF05045 RgpF: Rhamnan synthes 34.6 4E+02 0.0086 25.1 14.7 118 64-194 263-406 (498)
233 PF03552 Cellulose_synt: Cellu 33.8 65 0.0014 31.6 4.4 37 82-124 19-55 (720)
234 KOG3765 Predicted glycosyltran 33.4 62 0.0013 29.3 4.0 40 144-183 179-218 (386)
235 KOG2791 N-acetylglucosaminyltr 32.6 1.8E+02 0.0039 25.8 6.4 52 65-127 116-167 (455)
236 PF13407 Peripla_BP_4: Peripla 32.3 2.8E+02 0.006 22.6 9.1 87 68-166 1-89 (257)
237 COG0041 PurE Phosphoribosylcar 32.2 1.5E+02 0.0033 23.0 5.4 61 67-139 4-64 (162)
238 PF15224 SCRG1: Scrapie-respon 31.8 35 0.00076 22.1 1.6 13 65-77 66-78 (78)
239 PF14979 TMEM52: Transmembrane 30.6 2.5E+02 0.0054 21.6 6.9 17 74-90 70-86 (154)
240 PF09151 DUF1936: Domain of un 30.5 13 0.00029 20.0 -0.4 14 68-81 9-22 (36)
241 cd02537 GT8_Glycogenin Glycoge 30.0 2.6E+02 0.0055 23.2 7.1 24 155-179 88-111 (240)
242 PF13905 Thioredoxin_8: Thiore 29.2 1.8E+02 0.004 19.5 7.1 62 101-168 33-94 (95)
243 cd01461 vWA_interalpha_trypsin 28.6 2.6E+02 0.0057 21.1 9.7 87 76-167 77-164 (171)
244 PRK14500 putative bifunctional 28.1 2.7E+02 0.0058 24.8 7.2 51 132-182 219-271 (346)
245 PF04724 Glyco_transf_17: Glyc 27.9 3.7E+02 0.0079 24.1 7.9 23 156-178 178-200 (356)
246 KOG2287 Galactosyltransferases 27.2 4.5E+02 0.0097 23.4 12.3 122 66-194 95-224 (349)
247 PF00154 RecA: recA bacterial 26.8 1.8E+02 0.004 25.6 5.7 22 156-177 80-101 (322)
248 COG2452 Predicted site-specifi 26.5 2.9E+02 0.0062 22.3 6.2 73 65-154 112-186 (193)
249 PF10686 DUF2493: Protein of u 26.3 1.7E+02 0.0036 19.3 4.2 52 75-140 14-65 (71)
250 PF10236 DAP3: Mitochondrial r 26.2 2.2E+02 0.0047 24.8 6.2 72 115-186 5-98 (309)
251 PRK10674 deoxyribodipyrimidine 26.1 5.1E+02 0.011 24.1 8.9 83 81-173 55-139 (472)
252 TIGR02092 glgD glucose-1-phosp 26.0 1.2E+02 0.0027 26.8 4.8 103 71-186 27-142 (369)
253 TIGR03815 CpaE_hom_Actino heli 25.9 2.6E+02 0.0057 24.3 6.8 34 136-169 99-134 (322)
254 cd06337 PBP1_ABC_ligand_bindin 25.1 2.3E+02 0.005 24.9 6.3 55 103-160 42-97 (357)
255 PF10443 RNA12: RNA12 protein; 24.9 2.7E+02 0.0059 25.6 6.6 61 119-182 6-67 (431)
256 KOG1478 3-keto sterol reductas 24.9 2.1E+02 0.0046 24.5 5.4 65 64-138 29-95 (341)
257 PF13707 RloB: RloB-like prote 24.9 3.4E+02 0.0073 21.2 8.3 62 120-181 14-86 (183)
258 cd06344 PBP1_ABC_ligand_bindin 24.3 2.6E+02 0.0057 24.1 6.5 52 101-155 37-89 (332)
259 TIGR00177 molyb_syn molybdenum 24.2 1.8E+02 0.0039 22.0 4.7 45 68-124 43-91 (144)
260 PF09419 PGP_phosphatase: Mito 24.0 2.7E+02 0.0059 21.9 5.7 35 101-138 75-112 (168)
261 PF13506 Glyco_transf_21: Glyc 23.4 2.9E+02 0.0064 21.6 6.0 57 76-138 10-66 (175)
262 PF14097 SpoVAE: Stage V sporu 23.4 3.8E+02 0.0082 21.2 8.6 80 106-189 2-85 (180)
263 PF05045 RgpF: Rhamnan synthes 22.8 1.8E+02 0.0038 27.4 5.2 74 106-187 1-82 (498)
264 PF11044 TMEMspv1-c74-12: Plec 22.7 1.8E+02 0.0039 17.3 4.5 9 3-11 4-12 (49)
265 cd02037 MRP-like MRP (Multiple 22.6 1.7E+02 0.0036 22.5 4.4 36 135-170 4-41 (169)
266 COG3510 CmcI Cephalosporin hyd 22.6 4.3E+02 0.0094 21.6 6.7 61 101-169 95-156 (237)
267 PF05393 Hum_adeno_E3A: Human 22.4 2.8E+02 0.006 19.3 4.8 14 22-35 46-59 (94)
268 TIGR03018 pepcterm_TyrKin exop 22.3 2.1E+02 0.0046 23.0 5.1 35 135-169 40-77 (207)
269 PF05073 Baculo_p24: Baculovir 21.9 90 0.0019 24.7 2.6 17 99-115 3-19 (182)
270 COG0761 lytB 4-Hydroxy-3-methy 21.9 3.3E+02 0.0072 23.6 6.1 75 105-181 159-237 (294)
271 KOG1371 UDP-glucose 4-epimeras 21.6 3.1E+02 0.0067 24.3 6.0 65 103-171 26-92 (343)
272 cd03008 TryX_like_RdCVF Trypar 21.6 3.7E+02 0.0081 20.5 6.8 72 103-180 65-136 (146)
273 PF04056 Ssl1: Ssl1-like; Int 21.5 4.4E+02 0.0095 21.3 8.7 95 78-186 79-177 (193)
274 PF15050 SCIMP: SCIMP protein 21.3 3.4E+02 0.0075 20.0 5.2 63 4-66 8-78 (133)
275 cd06327 PBP1_SBP_like_1 Peripl 21.3 3.5E+02 0.0075 23.3 6.6 36 101-139 37-73 (334)
276 cd06356 PBP1_Amide_Urea_BP_lik 21.2 3E+02 0.0064 23.8 6.2 52 101-155 38-90 (334)
277 PF05637 Glyco_transf_34: gala 21.2 83 0.0018 26.3 2.5 29 142-170 61-90 (239)
278 PF13768 VWA_3: von Willebrand 21.1 3.6E+02 0.0078 20.1 8.9 55 77-138 76-131 (155)
279 KOG2501 Thioredoxin, nucleored 21.0 4.1E+02 0.0089 20.7 8.6 64 100-169 65-128 (157)
280 PRK02228 V-type ATP synthase s 21.0 3.1E+02 0.0067 19.3 6.3 66 77-155 28-93 (100)
281 TIGR03291 methan_mark_17 putat 20.9 4.5E+02 0.0097 21.1 8.7 27 156-182 157-183 (185)
282 cd06328 PBP1_SBP_like_2 Peripl 20.8 3.7E+02 0.0081 23.2 6.7 50 102-154 40-90 (333)
283 COG1519 KdtA 3-deoxy-D-manno-o 20.6 6.7E+02 0.015 23.0 10.9 90 63-169 47-136 (419)
284 TIGR00140 hupD hydrogenase exp 20.6 2.9E+02 0.0063 20.4 5.2 51 120-175 3-55 (134)
285 cd06532 Glyco_transf_25 Glycos 20.5 3.5E+02 0.0076 19.8 6.1 72 100-172 24-98 (128)
286 PF02434 Fringe: Fringe-like; 20.4 86 0.0019 26.4 2.5 32 155-186 85-116 (252)
287 PLN00176 galactinol synthase 20.4 2.3E+02 0.005 25.1 5.2 20 153-172 109-128 (333)
288 cd01393 recA_like RecA is a b 20.4 4.6E+02 0.0099 21.1 7.3 50 132-181 20-77 (226)
289 PRK13233 nifH nitrogenase redu 20.4 1.8E+02 0.0039 24.5 4.5 38 133-171 5-45 (275)
290 cd02968 SCO SCO (an acronym fo 20.4 3.5E+02 0.0076 19.7 7.8 36 103-139 59-94 (142)
291 PLN03133 beta-1,3-galactosyltr 20.4 8.2E+02 0.018 24.0 11.5 74 104-179 419-498 (636)
No 1
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=1.2e-27 Score=217.25 Aligned_cols=124 Identities=24% Similarity=0.368 Sum_probs=113.5
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (283)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (283)
...|.|||+||+|||++.++++++|+++ |+++++||+||||||+|+|.+.++++.++++ ++++++.++|.
T Consensus 51 ~~~p~vsViIp~yne~~~i~~~l~sl~~--------q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~--~v~~i~~~~n~ 120 (420)
T PRK11204 51 KEYPGVSILVPCYNEGENVEETISHLLA--------LRYPNYEVIAINDGSSDNTGEILDRLAAQIP--RLRVIHLAENQ 120 (420)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCccHHHHHHHHHHhCC--cEEEEEcCCCC
Confidence 4567899999999999999999999988 6788999999999999999999999988887 89999988899
Q ss_pred CHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (283)
Q Consensus 143 gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 196 (283)
||+.|+|.|++++++|+++++|+|+.++|++|+++++.++++++.+++.|....
T Consensus 121 Gka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~ 174 (420)
T PRK11204 121 GKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRI 174 (420)
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCcee
Confidence 999999999999999999999999999999999999999888887776665443
No 2
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.95 E-value=1.1e-27 Score=217.93 Aligned_cols=124 Identities=16% Similarity=0.299 Sum_probs=108.4
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (283)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (283)
...|.|||+||+|||++.+.+||+|+.+| +++...+||+||||||+|+|.+++++++++++ +++++..+++.
T Consensus 46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~q------~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~--~v~v~~~~~~~ 117 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDTLFNCIESIYNQ------TYPIELIDIILANNQSTDDSFQVFCRAQNEFP--GLSLRYMNSDQ 117 (439)
T ss_pred CCCCCEEEEEEeCCChHHHHHHHHHHHhc------CCCCCCeEEEEEECCCChhHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence 35688999999999999999999999982 12333479999999999999999999988887 78887777789
Q ss_pred CHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (283)
Q Consensus 143 gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 194 (283)
||+.|+|.|++.++||+++++|+|+.++|++|+++++.+.++++.+++.|..
T Consensus 118 Gka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~ 169 (439)
T TIGR03111 118 GKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVI 169 (439)
T ss_pred CHHHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEE
Confidence 9999999999999999999999999999999999999999888766555544
No 3
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.95 E-value=4.6e-27 Score=214.38 Aligned_cols=122 Identities=28% Similarity=0.409 Sum_probs=112.4
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (283)
..|.|||+||+|||+..++++|+++++ |+++++||+||||||+|+|.++++++.++++ ++++++.++|.|
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~--------q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~--~v~vv~~~~n~G 142 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALA--------QTYTNIEVIAINDGSSDDTAQVLDALLAEDP--RLRVIHLAHNQG 142 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHc--------CCCCCeEEEEEECCCCccHHHHHHHHHHhCC--CEEEEEeCCCCC
Confidence 467899999999999999999999988 6788999999999999999999999988887 899999888999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccce
Q 023346 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSV 195 (283)
Q Consensus 144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 195 (283)
|+.|+|.|++++++|+++++|+|+.++|++++++++.+.++++.+++.+...
T Consensus 143 ka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~ 194 (444)
T PRK14583 143 KAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPR 194 (444)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccce
Confidence 9999999999999999999999999999999999999988888777666543
No 4
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.95 E-value=9.1e-27 Score=199.00 Aligned_cols=120 Identities=17% Similarity=0.254 Sum_probs=104.4
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (283)
..|.||||||+||+++.+.++|+|+++ |+++++|||||||||+| .+.++++..+...++++++.++.|.|
T Consensus 3 ~~p~VSVIip~yN~~~~l~~~l~Svl~--------Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G 72 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIRAIKSVLR--------QDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSG 72 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCC
Confidence 357899999999999999999999998 78889999999999984 55666666654445899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD 193 (283)
Q Consensus 144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (283)
.+.|+|.|++.|+||||+|+|+|+.+.|+.|+++++.+.+.+....+++.
T Consensus 73 ~~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~ 122 (279)
T PRK10018 73 ACAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYAN 122 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEcc
Confidence 99999999999999999999999999999999999999876655544443
No 5
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.95 E-value=1.7e-26 Score=206.27 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=105.4
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (283)
..|.||||||+|||++.|++||+|+++ |+|+++||||+||+|+|+|.++++++++++|..+++++..+++.|
T Consensus 39 ~~p~VSViiP~~nee~~l~~~L~Sl~~--------q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G 110 (373)
T TIGR03472 39 AWPPVSVLKPLHGDEPELYENLASFCR--------QDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHG 110 (373)
T ss_pred CCCCeEEEEECCCCChhHHHHHHHHHh--------cCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCC
Confidence 467899999999999999999999998 778889999999999999999999999998866688887665544
Q ss_pred ---HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346 144 ---KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (283)
Q Consensus 144 ---k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 192 (283)
|..+++.++++++||+++|+|+|+.++|++|+++++.++ +++.+++.+
T Consensus 111 ~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~ 161 (373)
T TIGR03472 111 PNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTC 161 (373)
T ss_pred CChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEec
Confidence 788888899999999999999999999999999999995 455544444
No 6
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.94 E-value=3.1e-26 Score=187.24 Aligned_cols=119 Identities=20% Similarity=0.326 Sum_probs=104.0
Q ss_pred ceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346 66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHG 143 (283)
Q Consensus 66 p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~~~~~~~~~~~g 143 (283)
|++|||||+||++ +.+++||+|+++ |+++++|||||||||+|++. ++++.+..+.+ +++++..+++.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~--------q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~--~~~~~~~~~~~g 70 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRA--------QTYPNWELCIADDASTDPEVKRVLKKYAAQDP--RIKVVFREENGG 70 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHh--------CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCC--CEEEEEcccCCC
Confidence 5699999999999 999999999998 67778999999999999755 55666665555 788888888999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (283)
Q Consensus 144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 194 (283)
++.|+|.|++.+++||++++|+|+.++|++|+++++.+.++++.+++++..
T Consensus 71 ~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 121 (202)
T cd04184 71 ISAATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDE 121 (202)
T ss_pred HHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccH
Confidence 999999999999999999999999999999999999997777766655443
No 7
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.94 E-value=1.8e-26 Score=188.24 Aligned_cols=109 Identities=20% Similarity=0.306 Sum_probs=97.3
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC--
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG-- 143 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g-- 143 (283)
|.||||||+|||++.|.++|+|+++ |+++++|||||||+|+|+|.++++++..+++..+++++..+.+.|
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~--------q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 72 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQ--------QDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGIN 72 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHh--------ccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCC
Confidence 5699999999999999999999998 677789999999999999999999998888744577777665544
Q ss_pred -HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (283)
Q Consensus 144 -k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~ 182 (283)
++.++|.|+++++|||++++|+|+.++|++|+++++.+.
T Consensus 73 ~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~ 112 (196)
T cd02520 73 PKVNNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLM 112 (196)
T ss_pred HhHHHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhh
Confidence 677899999999999999999999999999999999984
No 8
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.94 E-value=2.8e-26 Score=193.50 Aligned_cols=118 Identities=21% Similarity=0.342 Sum_probs=96.0
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 145 (283)
|.||||||+||+++.|+++|+|+.++.. |++.++|||||||||+|+|.++++++..+. +++++..+ +.|.+
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~-----~~~~~~EiIVvDdgStD~t~~i~~~~~~~~---~i~~i~~~-~~G~~ 71 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQ-----DPGISFEWIVVDGGSNDGTREFLENLNGIF---NLRFVSEP-DNGIY 71 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHh-----CCCCCEEEEEEECcCcccHHHHHHHhcccC---CEEEEECC-CCCHH
Confidence 5799999999999999999999986433 456789999999999999999998875432 58888765 77999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD 193 (283)
Q Consensus 146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (283)
.|+|.|++.|+||||+++|+|+.+.|+.++.+ ..+...+...+++|.
T Consensus 72 ~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~-~~~~~~~~~~~v~g~ 118 (248)
T PRK10063 72 DAMNKGIAMAQGRFALFLNSGDIFHQDAANFV-RQLKMQKDNAMIIGD 118 (248)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccCcCHHHHH-HHHHhCCCCeEEEee
Confidence 99999999999999999999999999886644 444444333344444
No 9
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.94 E-value=5.5e-26 Score=203.61 Aligned_cols=116 Identities=28% Similarity=0.351 Sum_probs=102.1
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCC-ceEEEEEeCCCCcchHHHHHHHHHHcCC-CcEEEEEcC-
Q 023346 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTV-DNVRIILLG- 139 (283)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~~~~~~~~- 139 (283)
+..|+||||||+|||++.|++||+|+++ |+++ ++|||||||+|+|+|.++++++.++++. .++++++.+
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~--------q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~ 108 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLE--------QDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQP 108 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHh--------CCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCC
Confidence 4578899999999999999999999998 5665 6999999999999999999999877653 268888753
Q ss_pred ---CCCCHHHHHHHHHHHcC-----CCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 140 ---RNHGKGEAIRKGMLHSR-----GELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 140 ---~~~gk~~a~n~g~~~a~-----~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
.+.||+.|+|.|+++++ +|+++++|+|+.++|++++++++.+++.+.
T Consensus 109 ~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~ 163 (384)
T TIGR03469 109 LPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGL 163 (384)
T ss_pred CCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCC
Confidence 23689999999999999 999999999999999999999999987543
No 10
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.93 E-value=9.5e-26 Score=184.34 Aligned_cols=120 Identities=24% Similarity=0.382 Sum_probs=106.4
Q ss_pred EEEEeecCCC--CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC-CcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346 69 SLIIPAFNEE--HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (283)
Q Consensus 69 sviip~~ne~--~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 145 (283)
||+||+||++ +.|++||+|+++ |++.+.||||||||| +|+|.++++++.++++ ++++..++|.|++
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~--------q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~---i~~i~~~~n~G~~ 69 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILK--------QTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP---LKVVPLEKNRGLG 69 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHh--------cCCCCcEEEEEECCCCchhHHHHHHHHHhcCC---eEEEEcCccccHH
Confidence 6999999998 489999999998 677789999999998 7889999988877654 8899988899999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecC
Q 023346 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDS 199 (283)
Q Consensus 146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (283)
.|+|.|+++++|||++++|+|+.++|++|+++++.++++++..++.+.....+.
T Consensus 70 ~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (201)
T cd04195 70 KALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDS 123 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECC
Confidence 999999999999999999999999999999999999988888777776655443
No 11
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.93 E-value=2e-25 Score=193.78 Aligned_cols=111 Identities=23% Similarity=0.285 Sum_probs=97.1
Q ss_pred EEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCC--ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346 69 SLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSF--TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (283)
Q Consensus 69 sviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 145 (283)
|||||+||++ +.|.+||+|+++ |++. .+|||||||||+|+|.+.+.+.......+++++++.+.|.|++
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~--------~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~ 72 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVIN--------RTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLI 72 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHh--------cCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHH
Confidence 7999999999 999999999998 3333 4699999999999999988763222212389999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 187 (283)
.|+|.|+++|+||||+|+|+|+.++|+||+++++.+.+++..
T Consensus 73 ~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~ 114 (299)
T cd02510 73 RARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKT 114 (299)
T ss_pred HHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCe
Confidence 999999999999999999999999999999999999987765
No 12
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.93 E-value=4.4e-26 Score=191.93 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=97.3
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCC--ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF--TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (283)
|.||||||+|||++.|.++|+|+.+ |+++ .+|||||||+|+|+|.++++++... +..++.++.+..+.|
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~--------~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G 71 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSA--------LDYPRSKLDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRT 71 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHh--------CcCCcccEEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCc
Confidence 5799999999999999999999988 4443 5999999999999999999887532 112455666666789
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc-CCccc
Q 023346 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV-GRKEY 189 (283)
Q Consensus 144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~-~~~~~ 189 (283)
++.|+|.|+++++||||+++|+|+.++|+++.++++.+.+. ++.++
T Consensus 72 ~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~ 118 (241)
T cd06427 72 KPKACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLAC 118 (241)
T ss_pred hHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999865 44333
No 13
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.93 E-value=3.1e-24 Score=188.24 Aligned_cols=132 Identities=45% Similarity=0.739 Sum_probs=111.8
Q ss_pred CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc--CCCcEEEEEcC
Q 023346 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLG 139 (283)
Q Consensus 62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~ 139 (283)
....|.+|||||+|||++.|+++|+++.+++.+...+++..++|||||||||+|+|.++++++.+++ +..+++++..+
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~ 145 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL 145 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC
Confidence 5578899999999999999999999999877643223345589999999999999999999988764 33369999999
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHH--cCCccccccc
Q 023346 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA--VGRKEYNHGD 193 (283)
Q Consensus 140 ~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~--~~~~~~~~~~ 193 (283)
.|.|++.|+|.|+++++||+|+++|+|+..+|+.+.++++.+.+ .++.+++.|.
T Consensus 146 ~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 146 RNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred CCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 99999999999999999999999999999999999999999976 3344444443
No 14
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.93 E-value=2.6e-25 Score=194.87 Aligned_cols=112 Identities=23% Similarity=0.377 Sum_probs=103.6
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (283)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk 144 (283)
.|.||||||+||+++.|++||+|+++ |++.++|||||||||+|+|.++++++.++++ ++++++.+ |.|.
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~--------Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~--~i~vi~~~-n~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIA--------QTWTALEIIIVNDGSTDNSVEIAKHYAENYP--HVRLLHQA-NAGV 73 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHh--------CCCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEECC-CCCh
Confidence 57899999999999999999999998 7788999999999999999999999988887 89999864 9999
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 145 ~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 187 (283)
+.|+|.|++.|+||||+|+|+|+.+.|++++++++.+.+.+.+
T Consensus 74 ~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~d 116 (328)
T PRK10073 74 SVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLD 116 (328)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999988765433
No 15
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.93 E-value=2.7e-25 Score=185.95 Aligned_cols=121 Identities=23% Similarity=0.327 Sum_probs=97.5
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCC
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHG 143 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~~~~~~~g 143 (283)
|+||||||+|||++.|.++|+|+++| +++...+||||+|| |+|+|.++++++..++. ..+++.+...++.|
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q------~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G 73 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACAL------DYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTG 73 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhc------CCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCC
Confidence 46999999999999999999999982 12334589999998 99999999998766542 23677777666666
Q ss_pred -HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (283)
Q Consensus 144 -k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 194 (283)
|+.|+|.|+++++||||+++|+|+.++|++|+++...+ .+++.+++.+..
T Consensus 74 ~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~v~~v~~~~ 124 (232)
T cd06437 74 YKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPKLGFVQTRW 124 (232)
T ss_pred CchHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCCeEEEecce
Confidence 89999999999999999999999999999999977655 455655555543
No 16
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.93 E-value=1.3e-25 Score=186.21 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=96.8
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCC-ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc----CCCCCH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL----GRNHGK 144 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~----~~~~gk 144 (283)
||||+||+++.|++||+|+++ |+++ ++|||||||||+|+|.++++++..+.+..+++++.. +.+.|.
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~--------q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 72 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQ--------QDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGV 72 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHh--------CCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccH
Confidence 699999999999999999998 5555 699999999999999999999888766456777653 345799
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 145 ~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 187 (283)
+.|+|.|++.++|||++|+|+|+.++|+++++++..+.+++..
T Consensus 73 ~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~ 115 (219)
T cd06913 73 GYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNS 115 (219)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999988876653
No 17
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.92 E-value=5.5e-25 Score=185.49 Aligned_cols=122 Identities=23% Similarity=0.385 Sum_probs=105.7
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (283)
..|+||||||+|||++.|+.+++++.+++ ++..++|||||||||+|+|.++++++..+++...++++..++|.|
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~------~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G 80 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKAL------QDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLG 80 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHh------ccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCC
Confidence 46789999999999999999998887643 234489999999999999999999998877655788888888999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (283)
Q Consensus 144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 192 (283)
++.|+|.|+++++|||++++|+|+.++|++|+++++.+.++ +..++.|
T Consensus 81 ~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~~v~g 128 (243)
T PLN02726 81 LGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRET-GADIVTG 128 (243)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhc-CCcEEEE
Confidence 99999999999999999999999999999999999998764 3334444
No 18
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.92 E-value=2.1e-24 Score=205.90 Aligned_cols=117 Identities=16% Similarity=0.254 Sum_probs=100.8
Q ss_pred CCCceEEEEEeecCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC
Q 023346 63 PAEKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN 141 (283)
Q Consensus 63 ~~~p~vsviip~~ne~~-~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~ 141 (283)
...|+|||+||+|||+. .+++++.++++ ++|+..++||+|+||||+|+|.++++++ +++++++++|
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~------~dYP~~k~EViVVDDgS~D~t~~la~~~-------~v~yI~R~~n 323 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLG------IDWPKDKLNIWILDDGGREEFRQFAQEV-------GVKYIARPTH 323 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHh------ccCCCCceEEEEEeCCCChHHHHHHHHC-------CcEEEEeCCC
Confidence 45689999999999985 56788888877 2345557999999999999999888765 6888887755
Q ss_pred -CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346 142 -HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (283)
Q Consensus 142 -~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 192 (283)
.||++|+|.|+++++||||+++|+|+.+++++|++++..|.++|+.+++.+
T Consensus 324 ~~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQt 375 (852)
T PRK11498 324 EHAKAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQT 375 (852)
T ss_pred CcchHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEc
Confidence 569999999999999999999999999999999999999988888776654
No 19
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.92 E-value=2.1e-24 Score=177.72 Aligned_cols=121 Identities=24% Similarity=0.318 Sum_probs=107.7
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 023346 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (283)
Q Consensus 69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~ 148 (283)
|||||+||+++.|+++|+|+++ |+++++|||||||||+|+|.++++++..+++ ..++++..+.+.|++.++
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~--------q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~ 71 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILA--------QTYKNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNF 71 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHh--------CcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHH
Confidence 6999999999999999999998 6677899999999999999999999988875 467888888899999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeec
Q 023346 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVD 198 (283)
Q Consensus 149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 198 (283)
|.|++.++|||++++|+|+.+.|++|.++++.+...+...++.+.....+
T Consensus 72 n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 121 (214)
T cd04196 72 ESLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVD 121 (214)
T ss_pred HHHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEEC
Confidence 99999999999999999999999999999999777777666666554433
No 20
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.91 E-value=1.3e-24 Score=174.78 Aligned_cols=108 Identities=27% Similarity=0.518 Sum_probs=98.8
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n 149 (283)
||||+||+++.|.++|+++.+++. |++.++|||||||||+|+|.++++.+..+.+ +++++...+|.|++.|+|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~-----~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~i~~i~~~~n~G~~~a~n 73 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLE-----SLGYDYEIIFVDDGSTDRTLEILRELAARDP--RVKVIRLSRNFGQQAALL 73 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHH-----hcCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEEecCCCCcHHHHH
Confidence 689999999999999999988665 4566899999999999999999999988776 899999888999999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
.|++++++|+++++|+|+.++|++|+++++.+...
T Consensus 74 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~ 108 (181)
T cd04187 74 AGLDHARGDAVITMDADLQDPPELIPEMLAKWEEG 108 (181)
T ss_pred HHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999986543
No 21
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.91 E-value=2.5e-24 Score=175.19 Aligned_cols=116 Identities=23% Similarity=0.376 Sum_probs=100.5
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 023346 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (283)
Q Consensus 69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~ 148 (283)
|||||+||+++.++++|+|+.+ |+++++|||||||+|+|+|.++++++..+ +.++...++.|++.++
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~--------q~~~~~evivvDd~s~d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~ 67 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLS--------QTYPNIEYIVIDGGSTDGTVDIIKKYEDK-----ITYWISEPDKGIYDAM 67 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHh--------CCCCCceEEEEeCCCCccHHHHHHHhHhh-----cEEEEecCCcCHHHHH
Confidence 6999999999999999999998 67778999999999999999999887553 3344455689999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceee
Q 023346 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTV 197 (283)
Q Consensus 149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 197 (283)
|.|++++++||++++|+|+.+.++++.+++..+...++..+++|.....
T Consensus 68 n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 116 (202)
T cd06433 68 NKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLV 116 (202)
T ss_pred HHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEE
Confidence 9999999999999999999999999999998887777777666665443
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.91 E-value=4.4e-24 Score=178.37 Aligned_cols=117 Identities=19% Similarity=0.282 Sum_probs=100.7
Q ss_pred ceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346 66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (283)
Q Consensus 66 p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (283)
|.||||||+||++ ..++++|+|++. |++++ +|||||||||+|+|.++++++..++ +++++..+.+.
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~--------q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~ 69 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALA--------IDYPHDKLRVYVLDDGRRPELRALAAELGVEY---GYRYLTRPDNR 69 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHh--------cCCCcccEEEEEEcCCCchhHHHHHHHhhccc---CceEEEeCCCC
Confidence 5699999999986 578999999998 66777 9999999999999999999887654 35666666554
Q ss_pred -CHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346 143 -GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD 193 (283)
Q Consensus 143 -gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (283)
++++++|.|+++++|||++++|+|+.++|++|+++++.+.++++.+++.+.
T Consensus 70 ~~~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~ 121 (234)
T cd06421 70 HAKAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTP 121 (234)
T ss_pred CCcHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecc
Confidence 478899999999999999999999999999999999999887776665554
No 23
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.90 E-value=4.2e-23 Score=197.45 Aligned_cols=121 Identities=25% Similarity=0.351 Sum_probs=99.8
Q ss_pred CCCceEEEEEeecCCCCCh-HHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcch--------------HHHHHHHHHH
Q 023346 63 PAEKYISLIIPAFNEEHRL-PGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT--------------KRVAFDFVRK 127 (283)
Q Consensus 63 ~~~p~vsviip~~ne~~~l-~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t--------------~~~~~~~~~~ 127 (283)
+..|.|||+||+|||+..+ +++++++++ ++|+..++||+|+||||||+| .+.++++.++
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~------~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~ 201 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKN------MDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRK 201 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHh------CCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHH
Confidence 4568899999999998755 678988877 223444799999999999987 3455566555
Q ss_pred cCCCcEEEEEcCCC-CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346 128 YTVDNVRIILLGRN-HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (283)
Q Consensus 128 ~~~~~~~~~~~~~~-~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 192 (283)
. +++++.+++| .+|++|+|.|+++++||+++++|+|+.++|++|++++..|.++++.+.+.+
T Consensus 202 ~---~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqt 264 (713)
T TIGR03030 202 L---GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQT 264 (713)
T ss_pred c---CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeC
Confidence 4 5889988776 469999999999999999999999999999999999999988887765543
No 24
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=99.90 E-value=5.7e-23 Score=168.03 Aligned_cols=202 Identities=44% Similarity=0.690 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeccCCCCCCCCCCCCCCCCC-CceEEEEEeecCCCCChHHHHHHHHH
Q 023346 12 LVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPA-EKYISLIIPAFNEEHRLPGALDETLN 90 (283)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~vsviip~~ne~~~l~~~l~s~~~ 90 (283)
+.+...+++.++..++...+..+..-.+.+....+.++.+......|...+.+ ...+|||||+|||+..|+..++....
T Consensus 12 ~~l~a~v~~~~l~~~l~~~~~~r~~~e~~e~ei~~~d~g~~k~~~lp~~~d~~~~~~lsVIVpaynE~~ri~~mldeav~ 91 (323)
T KOG2977|consen 12 TILVAKVLLKFLSVYLFESHLPRPALENEETEITLDDPGSIKSRTLPNIRDSPEKMYLSVIVPAYNEEGRIGAMLDEAVD 91 (323)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCccccccceEEEEcCCCCccceeCcccccChhhceeEEEEecCCcccchHHHHHHHHH
Confidence 33444444444444444466666555566666677777777767777766553 34899999999999999999999999
Q ss_pred HHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 023346 91 YLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK 170 (283)
Q Consensus 91 ~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~ 170 (283)
.++......+..++||+||||||+|.|.+++-++..++...+++|+...+|.||++|...|+-+++|++++|.|||..-.
T Consensus 92 ~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTk 171 (323)
T KOG2977|consen 92 YLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATK 171 (323)
T ss_pred HHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCcc
Confidence 88876555556799999999999999999999999787777999999999999999999999999999999999998876
Q ss_pred hhhHHHHHHHHHHcCCcccccccceeecCccccCCCceeeecccccccc-hhhhhccccc
Q 023346 171 VTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE-KALATVQYCD 229 (283)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~ 229 (283)
-..++++-+.+.+.... .....+.+|++.+++. +....+++.+
T Consensus 172 f~d~ekLe~al~~~~~p----------------~~r~~va~GsrahLe~~~a~a~rs~~r 215 (323)
T KOG2977|consen 172 FADLEKLEKALNDKAGP----------------GPRDDVACGSRAHLENTEAVAKRSVIR 215 (323)
T ss_pred CCCHHHHHHHHHhhcCC----------------CCCCceeecCHHHhhccHHHHHHhHhh
Confidence 66677777776543210 0112488999999887 7777777666
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.90 E-value=1.6e-23 Score=175.57 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=95.9
Q ss_pred EEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCC-HH
Q 023346 69 SLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHG-KG 145 (283)
Q Consensus 69 sviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~~~~~~~~~~~g-k~ 145 (283)
|||||+|||+ +.++++|+|+.+ |+++++|||||||+|+|+|. +.++++.++.+ .+++++...++.| ++
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~--------q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~-~~i~~i~~~~~~G~~~ 71 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAA--------LDYPNFEVIVIDNNTKDEALWKPVEAHCAQLG-ERFRFFHVEPLPGAKA 71 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHh--------CCCCCcEEEEEeCCCCchhHHHHHHHHHHHhC-CcEEEEEcCCCCCCch
Confidence 7999999998 689999999987 77888999999999999985 66777765544 3688888776667 79
Q ss_pred HHHHHHHHHcC--CCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346 146 EAIRKGMLHSR--GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (283)
Q Consensus 146 ~a~n~g~~~a~--~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 192 (283)
.|+|.|++++. +|+++++|+|+.++|++|.++++.++ .++.+++.+
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~ 119 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQA 119 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEec
Confidence 99999999975 79999999999999999999999986 455554443
No 26
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=1e-23 Score=175.43 Aligned_cols=109 Identities=24% Similarity=0.291 Sum_probs=95.1
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCCHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKG 145 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~~~gk~ 145 (283)
||||+||+++.|++||+|+++ |++++ +|||||||||+|+|.++++ +....+..+++++..+ .+.|++
T Consensus 1 viip~~n~~~~l~~~l~sl~~--------q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~ 71 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSA--------LDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKK 71 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHh--------CCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhH
Confidence 699999999999999999988 66666 9999999999999999987 4444443478888776 478999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 187 (283)
.++|.|++++++||++++|+|+.++|++|+++++.+.+++..
T Consensus 72 ~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 72 NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 999999999999999999999999999999999988765544
No 27
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.90 E-value=5.9e-23 Score=172.96 Aligned_cols=108 Identities=26% Similarity=0.467 Sum_probs=97.3
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCC--CceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKS--FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (283)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk 144 (283)
++|||||+||+++.+.++|+++.+ |.+ .++|||||||+|+|+|.+.++++.++.+ .++++..+ +.|+
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~--------q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~--~v~~i~~~-~~~~ 69 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLN--------QSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDP--RIRLIDNP-KRIQ 69 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHh--------ccCCCCccEEEEEeCCCCccHHHHHHHHHhcCC--eEEEEeCC-CCCc
Confidence 389999999999999999999987 444 5899999999999999999999987766 78999876 6689
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 145 ~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
+.|+|.|++.+++|+++++|+|+.++|++|+++++.+.+.+
T Consensus 70 ~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~ 110 (249)
T cd02525 70 SAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTG 110 (249)
T ss_pred hHHHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999886643
No 28
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.89 E-value=1.2e-22 Score=163.38 Aligned_cols=104 Identities=23% Similarity=0.371 Sum_probs=90.4
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n 149 (283)
||||+||+++.++++|+|+.+ |++.++||||+||+|+|+|.++++++....+.....+...+.+.|++.++|
T Consensus 1 ivip~~n~~~~l~~~l~sl~~--------q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 72 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLN--------QSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRN 72 (182)
T ss_pred CEEeecCChHHHHHHHHHHHh--------ccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHH
Confidence 689999999999999999998 667789999999999999999999887654422344444444568999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHH
Q 023346 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQI 181 (283)
Q Consensus 150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~ 181 (283)
.|++.++|||++++|+|+.++|++|+++++.+
T Consensus 73 ~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 73 KAIAAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 99999999999999999999999999999887
No 29
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.89 E-value=1.8e-24 Score=180.30 Aligned_cols=120 Identities=31% Similarity=0.442 Sum_probs=90.0
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC--
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG-- 143 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g-- 143 (283)
|+|+||||+||+.+.+.++|+|+++ |+++++||+|+||+++|++.+.++++.+.++..+++++..+.+.|
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~--------~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~ 72 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLA--------QDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPG 72 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTT--------SHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHc--------CCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcc
Confidence 5699999999999999999999998 445689999999999999999999988888744679988876544
Q ss_pred -HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (283)
Q Consensus 144 -k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 194 (283)
|+.++|.|++++++|+++++|+|+.++|++|+++++.+ ..++.+++.+..
T Consensus 73 ~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~-~~~~~~~v~~~~ 123 (228)
T PF13641_consen 73 GKARALNEALAAARGDYILFLDDDTVLDPDWLERLLAAF-ADPGVGAVGGPV 123 (228)
T ss_dssp HHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHH-HBSS--EEEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHH-HhCCCCeEeeeE
Confidence 89999999999999999999999999999999999999 667776666554
No 30
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.88 E-value=4e-22 Score=157.06 Aligned_cols=111 Identities=29% Similarity=0.472 Sum_probs=97.6
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 023346 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (283)
Q Consensus 69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~ 148 (283)
|||||+||+++.|.++|+|+.+ |+..++|||||||||+|+|.++++++.+.. .+++++..+++.|++.++
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~--------q~~~~~eiivvdd~s~d~~~~~~~~~~~~~--~~i~~i~~~~n~g~~~~~ 70 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLK--------QTDPDFEIIVVDDGSTDETEEILEEYAESD--PNIRYIRNPENLGFSAAR 70 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHH--------HSGCEEEEEEEECS-SSSHHHHHHHHHCCS--TTEEEEEHCCCSHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhh--------ccCCCEEEEEeccccccccccccccccccc--cccccccccccccccccc
Confidence 7999999999999999999999 467799999999999999999999987733 389999999999999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccc
Q 023346 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189 (283)
Q Consensus 149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~ 189 (283)
|.|+++++++|++++|+|+.+.|++|+++++.+.+.+...+
T Consensus 71 n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~ 111 (169)
T PF00535_consen 71 NRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVV 111 (169)
T ss_dssp HHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEE
T ss_pred cccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEE
Confidence 99999999999999999999999999999999999766543
No 31
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.88 E-value=7.5e-23 Score=165.05 Aligned_cols=104 Identities=26% Similarity=0.340 Sum_probs=88.2
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCC--CceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKS--FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a 147 (283)
||||+|||++.|.++|+++.+ |.+ ..+|||||||||+|+|.++++++.. .+.+...+.+.||+.|
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~--------~~~p~~~~eiivvdd~s~D~t~~~~~~~~~-----~~~~~~~~~~~gk~~a 67 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKA--------QDYPRELYRIFVVADNCTDDTAQVARAAGA-----TVLERHDPERRGKGYA 67 (183)
T ss_pred CEEeccchHHHHHHHHHHHHh--------cCCCCcccEEEEEeCCCCchHHHHHHHcCC-----eEEEeCCCCCCCHHHH
Confidence 699999999999999999987 344 5799999999999999998876521 3334344568899999
Q ss_pred HHHHHHHc-----CCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 148 IRKGMLHS-----RGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 148 ~n~g~~~a-----~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
+|.|++++ ++|+++++|+|+.++|++|.++++.+.++++
T Consensus 68 ln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~ 111 (183)
T cd06438 68 LDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGAR 111 (183)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCC
Confidence 99999876 4999999999999999999999999986544
No 32
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.88 E-value=2.1e-22 Score=164.75 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=95.3
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n 149 (283)
||||+||+++.|+++|+|+.+ |++++.||||+||||+|+|.++++++.... +++++..++|.|.+.++|
T Consensus 1 viI~~~n~~~~l~~~l~sl~~--------q~~~~~eiiivD~~s~d~t~~~~~~~~~~~---~i~~~~~~~n~g~~~~~n 69 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLA--------QTRPPDHIIVIDNASTDGTAEWLTSLGDLD---NIVYLRLPENLGGAGGFY 69 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHh--------ccCCCceEEEEECCCCcchHHHHHHhcCCC---ceEEEECccccchhhHHH
Confidence 689999999999999999998 677789999999999999999999886554 388999999999999999
Q ss_pred HHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346 150 KGMLHS---RGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188 (283)
Q Consensus 150 ~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~ 188 (283)
.|++.+ ++|+++|+|+|+.++|++++++++.+. .+..+
T Consensus 70 ~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~~ 110 (202)
T cd04185 70 EGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNPQ 110 (202)
T ss_pred HHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCce
Confidence 999875 699999999999999999999999987 44443
No 33
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.88 E-value=4.4e-22 Score=157.68 Aligned_cols=121 Identities=26% Similarity=0.427 Sum_probs=104.8
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n 149 (283)
||||+||+++.|.++|+|+++ |.+.++||+||||+|+|+|.+.++++....+ ..+.++..+++.|++.++|
T Consensus 1 Viip~~n~~~~l~~~l~sl~~--------q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~n 71 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLA--------LDYPKLEVIVVDDGSTDDTLEILEELAALYI-RRVLVVRDKENGGKAGALN 71 (180)
T ss_pred CeecccChHHHHHHHHHHHHh--------CCCCceEEEEEeCCCccchHHHHHHHhcccc-ceEEEEEecccCCchHHHH
Confidence 689999999999999999998 6667899999999999999999988766543 2467777778999999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecC
Q 023346 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDS 199 (283)
Q Consensus 150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (283)
.|++++++++++++|+|+.+.|++|++++..+...++..++.+.......
T Consensus 72 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (180)
T cd06423 72 AGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNG 121 (180)
T ss_pred HHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecC
Confidence 99999999999999999999999999998888877777666666554433
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.87 E-value=1.8e-21 Score=164.55 Aligned_cols=123 Identities=24% Similarity=0.406 Sum_probs=105.9
Q ss_pred CCCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 023346 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL 138 (283)
Q Consensus 61 ~~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~ 138 (283)
.....|++|||||+||++..+.++|+|+.+ |++++ +|||||||+|+|+|.++++++... +++++..
T Consensus 24 ~~~~~~~isVvip~~n~~~~l~~~l~si~~--------q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~ 91 (251)
T cd06439 24 DPAYLPTVTIIIPAYNEEAVIEAKLENLLA--------LDYPRDRLEIIVVSDGSTDGTAEIAREYADK----GVKLLRF 91 (251)
T ss_pred CCCCCCEEEEEEecCCcHHHHHHHHHHHHh--------CcCCCCcEEEEEEECCCCccHHHHHHHHhhC----cEEEEEc
Confidence 345678899999999999999999999988 44544 899999999999999999887654 5888888
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346 139 GRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (283)
Q Consensus 139 ~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 196 (283)
+++.|++.|+|.|++++++||++++|+|+.++|++|+++++.+. .+..+++++....
T Consensus 92 ~~~~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~ 148 (251)
T cd06439 92 PERRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFA-DPSVGAVSGELVI 148 (251)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhc-CCCccEEEeEEEe
Confidence 88999999999999999999999999999999999999999996 3455555554443
No 35
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=5.3e-21 Score=174.54 Aligned_cols=114 Identities=32% Similarity=0.517 Sum_probs=104.1
Q ss_pred CceEEEEEeecCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc-CCCC
Q 023346 65 EKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-GRNH 142 (283)
Q Consensus 65 ~p~vsviip~~ne~~-~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~-~~~~ 142 (283)
.|+++|+||+|||++ .++++++++.+ |+|+.+||+||||+|+|+|.+++++...+++ ++++++.. .++.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~--------~dyp~~evivv~d~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 123 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLS--------QDYPRYEVIVVDDGSTDETYEILEELGAEYG-PNFRVIYPEKKNG 123 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHh--------CCCCCceEEEECCCCChhHHHHHHHHHhhcC-cceEEEeccccCc
Confidence 589999999999998 99999999998 8899999999999999999999999998874 26777643 4689
Q ss_pred CHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 143 gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 187 (283)
||+.|+|.|++.+++|+|+++|+|..++||+|.+++..|.+.+..
T Consensus 124 gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 124 GKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred cchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 999999999999999999999999999999999999999877665
No 36
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.87 E-value=3.8e-21 Score=168.28 Aligned_cols=116 Identities=31% Similarity=0.484 Sum_probs=100.6
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (283)
..+++|||||+|||++.|+++++++.+.+. |...++|||||||||+|+|.++++++.++.. .++..+...+|.|
T Consensus 4 ~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~-----~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~-~~v~~i~~~~n~G 77 (325)
T PRK10714 4 PIKKVSVVIPVYNEQESLPELIRRTTAACE-----SLGKEYEILLIDDGSSDNSAEMLVEAAQAPD-SHIVAILLNRNYG 77 (325)
T ss_pred CCCeEEEEEcccCchhhHHHHHHHHHHHHH-----hCCCCEEEEEEeCCCCCcHHHHHHHHHhhcC-CcEEEEEeCCCCC
Confidence 345699999999999999999999877544 3455799999999999999999998866532 3677777778999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
++.|+|.|+++|+||+++++|+|...+|+.+.++++.++++.
T Consensus 78 ~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~ 119 (325)
T PRK10714 78 QHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGY 119 (325)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999997543
No 37
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.87 E-value=1.7e-21 Score=161.47 Aligned_cols=101 Identities=30% Similarity=0.464 Sum_probs=89.1
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 023346 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (283)
Q Consensus 68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a 147 (283)
||||||+||+++.+.++|+|+++ |++.++||+||||+|+|+|.+++++ . +++++.. +.|++.+
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~--------q~~~~~evivvdd~s~d~~~~~~~~-----~--~~~~~~~--~~g~~~a 63 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRR--------LNPLPLEIIVVDGGSTDGTVAIARS-----A--GVVVISS--PKGRARQ 63 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHh--------ccCCCcEEEEEeCCCCccHHHHHhc-----C--CeEEEeC--CcCHHHH
Confidence 69999999999999999999998 5567899999999999999998866 2 5666654 5789999
Q ss_pred HHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 148 ~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
+|.|++.+++++++++|+|+.++|+++++++..+...+
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 99999999999999999999999999999977775543
No 38
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.86 E-value=8.4e-22 Score=158.68 Aligned_cols=108 Identities=37% Similarity=0.713 Sum_probs=98.0
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n 149 (283)
|+||+||+++.+.++|+|+.++.+ ++..+|||||||+|+|+|.++++++..+.+ .++++..+++.|++.|+|
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~------~~~~~eiivvd~~s~d~~~~~~~~~~~~~~--~~~~~~~~~n~G~~~a~n 72 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLE------EGYDYEIIVVDDGSTDGTAEIARELAARVP--RVRVIRLSRNFGKGAAVR 72 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhc------cCCCEEEEEEcCCCCCChHHHHHHHHHhCC--CeEEEEccCCCCccHHHH
Confidence 689999999999999999998433 145899999999999999999999988887 778999999999999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
.|++.++|||++++|+|+.+.|++|++++..+.+.+
T Consensus 73 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~ 108 (185)
T cd04179 73 AGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGG 108 (185)
T ss_pred HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999865543
No 39
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.86 E-value=4.3e-22 Score=166.59 Aligned_cols=115 Identities=20% Similarity=0.349 Sum_probs=97.5
Q ss_pred eEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346 67 YISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (283)
Q Consensus 67 ~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 145 (283)
.||||||+|||+ +.+.+||+++.+ |+ ++|||||||+|+|+|.+.+.+.. ..+ .++++. .++.||+
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~--------q~--~~eiivvdd~s~d~~~~~l~~~~-~~~--~~~v~~-~~~~g~~ 66 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILR--------QK--PLEIIVVTDGDDEPYLSILSQTV-KYG--GIFVIT-VPHPGKR 66 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHh--------CC--CCEEEEEeCCCChHHHHHHHhhc-cCC--cEEEEe-cCCCChH
Confidence 389999999999 999999999998 55 78999999999999998875432 223 566665 4589999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (283)
Q Consensus 146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 196 (283)
.|+|.|++.+++|+|+++|+|+.++|++|+++++.+. +++.+++.+....
T Consensus 67 ~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v~~v~~~~~~ 116 (235)
T cd06434 67 RALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGVGTNQRI 116 (235)
T ss_pred HHHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhcc-CCCEeEEcCceEe
Confidence 9999999999999999999999999999999999998 6666666555433
No 40
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.86 E-value=5e-21 Score=158.89 Aligned_cols=107 Identities=27% Similarity=0.523 Sum_probs=97.6
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCC-CceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKS-FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~-~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~ 148 (283)
||||+||+++.|+++|+++.+| .+ ..+|||||||||+|+|.++++++.++.+ .++++..+.+.|++.|+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q--------~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~--~i~~~~~~~n~G~~~a~ 70 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAA--------LKGIDYEIIVVDDNSPDGTAEIVRELAKEYP--RVRLIVRPGKRGLGSAY 70 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHh--------hcCCCeEEEEEeCCCCCChHHHHHHHHHhCC--ceEEEecCCCCChHHHH
Confidence 6999999999999999999983 33 5799999999999999999999988877 78999988899999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
|.|+++|+||+++++|+|+.++|++|+++++.+...+.
T Consensus 71 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~ 108 (224)
T cd06442 71 IEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGA 108 (224)
T ss_pred HHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999755433
No 41
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.86 E-value=4.3e-21 Score=158.23 Aligned_cols=112 Identities=47% Similarity=0.828 Sum_probs=100.3
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n 149 (283)
||||+||+++.|+++|+++.+++.. |+...+|||||||||+|+|.++++++.++++. .++++..+.|.|++.|+|
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~----~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~~ 75 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEE----RPSFSYEIIVVDDGSKDGTAEVARKLARKNPA-LIRVLTLPKNRGKGGAVR 75 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhc----cCCCCEEEEEEeCCCCCchHHHHHHHHHhCCC-cEEEEEcccCCCcHHHHH
Confidence 6999999999999999999997653 35568999999999999999999999887762 358999888999999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
.|++.|+||||+++|+|+.++|+++.++++.+.+.+.
T Consensus 76 ~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 112 (211)
T cd04188 76 AGMLAARGDYILFADADLATPFEELEKLEEALKTSGY 112 (211)
T ss_pred HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999765443
No 42
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.86 E-value=2.1e-21 Score=153.16 Aligned_cols=106 Identities=25% Similarity=0.418 Sum_probs=95.6
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n 149 (283)
|+||+||+.+.+.++++|+.+ |.++++||+|+||||+|++.+.+++.. + +++++..+++.|++.|+|
T Consensus 1 vii~~~~~~~~l~~~l~sl~~--------~~~~~~~iiivdd~s~~~~~~~~~~~~---~--~~~~~~~~~~~g~~~a~n 67 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLA--------QTYPDFEVIVVDNASTDGSVELLRELF---P--EVRLIRNGENLGFGAGNN 67 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHh--------ccCCCeEEEEEECCCCchHHHHHHHhC---C--CeEEEecCCCcChHHHhh
Confidence 689999999999999999998 555789999999999999999887653 2 588888888999999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188 (283)
Q Consensus 150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~ 188 (283)
.|++.+++++++++|+|+.++|++++++++.+.+.++..
T Consensus 68 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~ 106 (166)
T cd04186 68 QGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVG 106 (166)
T ss_pred HHHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCce
Confidence 999999999999999999999999999999988876654
No 43
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.85 E-value=6.6e-21 Score=173.95 Aligned_cols=111 Identities=17% Similarity=0.278 Sum_probs=94.0
Q ss_pred CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--
Q 023346 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-- 139 (283)
Q Consensus 62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-- 139 (283)
..+.|.++|+||+|||++.|+++|++++.+ ++|+++||+|++|+|+|+|.+.++++.+++| +++++..+
T Consensus 62 ~~~~p~vaIlIPA~NE~~vI~~~l~s~L~~-------ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p--~v~~vv~~~~ 132 (504)
T PRK14716 62 SVPEKRIAIFVPAWREADVIGRMLEHNLAT-------LDYENYRIFVGTYPNDPATLREVDRLAARYP--RVHLVIVPHD 132 (504)
T ss_pred cCCCCceEEEEeccCchhHHHHHHHHHHHc-------CCCCCeEEEEEECCCChhHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 345788999999999999999999998752 4678999999999999999999999999998 67655443
Q ss_pred CCCCHHHHHHHHHHHc------CC---CEEEEEeCCCCCChhhHHHHHHHH
Q 023346 140 RNHGKGEAIRKGMLHS------RG---ELLLMLDADGATKVTDLEKLESQI 181 (283)
Q Consensus 140 ~~~gk~~a~n~g~~~a------~~---d~i~~~D~D~~~~~~~l~~~~~~~ 181 (283)
...||+.|+|.|++.+ +| |+++++|||+.++|++|+.+...+
T Consensus 133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~ 183 (504)
T PRK14716 133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL 183 (504)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc
Confidence 2356999999998754 45 999999999999999999876554
No 44
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.85 E-value=1.1e-20 Score=162.43 Aligned_cols=118 Identities=28% Similarity=0.343 Sum_probs=94.6
Q ss_pred EEEEeecCCCCC--hHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC---CC
Q 023346 69 SLIIPAFNEEHR--LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN---HG 143 (283)
Q Consensus 69 sviip~~ne~~~--l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~---~g 143 (283)
|||||++++... |.+.|.+++.++... +....+|||||||||++.+.+.++++.++.. ..+++..+.+ .|
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~---~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~--~~~~i~~~~~~~~f~ 75 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQF---QSDPDFEIIVVDDGSSDEFDEELKKLCEKNG--FIRYIRHEDNGEPFS 75 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhc---CCCCCEEEEEEECCCchhHHHHHHHHHhccC--ceEEEEcCCCCCCcC
Confidence 799999999864 556666666655542 4577999999999999999888888877765 4446665533 59
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHH---HHHHcCCccccc
Q 023346 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLES---QIHAVGRKEYNH 191 (283)
Q Consensus 144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~---~~~~~~~~~~~~ 191 (283)
++.|+|.|+++|++|+|+|+|+|+.++|++++++++ .+.+++....++
T Consensus 76 ~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~ 126 (281)
T PF10111_consen 76 RAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVY 126 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999999999999999999999 666665544433
No 45
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.85 E-value=6.8e-21 Score=165.07 Aligned_cols=124 Identities=23% Similarity=0.314 Sum_probs=100.3
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEE-EcCCC
Q 023346 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRII-LLGRN 141 (283)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~-~~~~~ 141 (283)
+..|++|||||+|||++.|.++|+++.+++. + ....|||||||||+|+|.++++++..+... ...++ ..+.|
T Consensus 28 ~~~~~vSVVIPayNee~~I~~~l~sl~~~~~-----~-~~~~EIIVVDDgStD~T~~ia~~~~~~v~~-~~~~~~~~~~n 100 (306)
T PRK13915 28 KAGRTVSVVLPALNEEETVGKVVDSIRPLLM-----E-PLVDELIVIDSGSTDATAERAAAAGARVVS-REEILPELPPR 100 (306)
T ss_pred cCCCCEEEEEecCCcHHHHHHHHHHHHHHhc-----c-CCCcEEEEEeCCCccHHHHHHHHhcchhhc-chhhhhccccC
Confidence 3567899999999999999999999988443 1 336799999999999999999887433210 11222 23568
Q ss_pred CCHHHHHHHHHHHcCCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCccccccc
Q 023346 142 HGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHGD 193 (283)
Q Consensus 142 ~gk~~a~n~g~~~a~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (283)
.||+.|+|.|++.++||+++++|+|+. ++|+++.++++.+..+++..++.|.
T Consensus 101 ~Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 999999999999999999999999997 8999999999999877776665553
No 46
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.84 E-value=5.8e-21 Score=159.94 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=88.1
Q ss_pred EEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 023346 70 LIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (283)
Q Consensus 70 viip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~ 148 (283)
+|||+||++ +.+.+||+|+.+ | ..|||||||+|+|.+....+. .. .+++++..++|.|++.|+
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~--------q---~~~iivvDn~s~~~~~~~~~~---~~--~~i~~i~~~~n~G~~~a~ 64 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAE--------Q---VDKVVVVDNSSGNDIELRLRL---NS--EKIELIHLGENLGIAKAL 64 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhc--------c---CCEEEEEeCCCCccHHHHhhc---cC--CcEEEEECCCceehHHhh
Confidence 589999999 999999999998 4 579999999998887765433 22 379999999999999999
Q ss_pred HHHHHHcCC---CEEEEEeCCCCCChhhHHHHH---HHHHHcCCcccc
Q 023346 149 RKGMLHSRG---ELLLMLDADGATKVTDLEKLE---SQIHAVGRKEYN 190 (283)
Q Consensus 149 n~g~~~a~~---d~i~~~D~D~~~~~~~l~~~~---~~~~~~~~~~~~ 190 (283)
|.|++.+++ ||++++|+|+.++|++|++++ ..+..++..+++
T Consensus 65 N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 112 (237)
T cd02526 65 NIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAV 112 (237)
T ss_pred hHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEE
Confidence 999999987 999999999999999999995 444445554443
No 47
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.83 E-value=3.4e-20 Score=150.59 Aligned_cols=110 Identities=25% Similarity=0.382 Sum_probs=91.2
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC---CCCCHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG---RNHGKGE 146 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~---~~~gk~~ 146 (283)
||||+|||++.|+++|+|+.+ |. +++|||||||+|+|+|.++++ +....+ ++++++.. .+.||+.
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~--------~~-~~~eIivvdd~S~D~t~~~~~-~~~~~~--~v~~i~~~~~~~~~Gk~~ 68 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLR--------NK-PNFLVLVIDDASDDDTAGIVR-LAITDS--RVHLLRRHLPNARTGKGD 68 (191)
T ss_pred CEEeccccHHHHHHHHHHHHh--------CC-CCeEEEEEECCCCcCHHHHHh-heecCC--cEEEEeccCCcCCCCHHH
Confidence 699999999999999999998 55 689999999999999999997 433334 78888753 4689999
Q ss_pred HHHHHHHHcC-----------CCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346 147 AIRKGMLHSR-----------GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (283)
Q Consensus 147 a~n~g~~~a~-----------~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 192 (283)
|+|.|++.++ +|+|+++|+|+.++|++|+++...+. .+....+.+
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~ 124 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQS 124 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEee
Confidence 9999999875 37999999999999999999887775 455443333
No 48
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.82 E-value=7.9e-20 Score=159.07 Aligned_cols=124 Identities=22% Similarity=0.254 Sum_probs=109.0
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (283)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk 144 (283)
.|.+++||++||..+.+.+||+++.+ |++...++++|||+|+|++.+.++... .+ +++++.+++|.|.
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~--------~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~--~v~~i~~~~NlG~ 69 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAA--------QTYPDDVIVVVDNGSTDGSLEALKARF--FP--NVRLIENGENLGF 69 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhc--------CCCCCcEEEEccCCCCCCCHHHHHhhc--CC--cEEEEEcCCCccc
Confidence 46799999999999999999999998 777788888999999999999886543 44 8999999999999
Q ss_pred HHHHHHHHHHcCCC---EEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecCc
Q 023346 145 GEAIRKGMLHSRGE---LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDST 200 (283)
Q Consensus 145 ~~a~n~g~~~a~~d---~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (283)
+++.|.|++.|.++ |++++|.|..++|++|+++++.++..+...++.+.....+..
T Consensus 70 agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~ 128 (305)
T COG1216 70 AGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDES 128 (305)
T ss_pred hhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCC
Confidence 99999999998654 999999999999999999999999998887766666655543
No 49
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=140.00 Aligned_cols=115 Identities=27% Similarity=0.447 Sum_probs=101.3
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 145 (283)
++.||++|+|||.+.|+-++.-+..... +...++|||||||+|.|+|.+++++++..+..+++.+..+....|.+
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~-----e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLg 77 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMS-----EEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLG 77 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhh-----hhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccch
Confidence 4689999999999999854444444332 45778999999999999999999999988888899999999899999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
.|.-.|+++|+|+|++++|||-..+|.++.++++...++.
T Consensus 78 tAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~ 117 (238)
T KOG2978|consen 78 TAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGN 117 (238)
T ss_pred HHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccC
Confidence 9999999999999999999999999999999999776654
No 50
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.81 E-value=2.2e-19 Score=149.96 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=92.1
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 023346 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (283)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~ 146 (283)
+|||+||+|||++.|++||+|+.. |. .|||||||||+|+|.++++++ +++++.. .+.|.+.
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~--------~~---~eiivvD~gStD~t~~i~~~~-------~~~v~~~-~~~g~~~ 61 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKW--------AV---DEIIVVDSGSTDRTVEIAKEY-------GAKVYQR-WWDGFGA 61 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhc--------cc---CEEEEEeCCCCccHHHHHHHc-------CCEEEEC-CCCChHH
Confidence 389999999999999999999976 32 399999999999999998754 6788887 6899999
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346 147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 147 a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 187 (283)
++|.|++.+++|||+++|+|..++|++++++.+.+.+++..
T Consensus 62 ~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~ 102 (229)
T cd02511 62 QRNFALELATNDWVLSLDADERLTPELADEILALLATDDYD 102 (229)
T ss_pred HHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999887653
No 51
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.78 E-value=1.3e-17 Score=158.25 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=96.8
Q ss_pred CCCCCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 023346 59 SVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL 138 (283)
Q Consensus 59 ~~~~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~ 138 (283)
....+..|.|||+||+|||+.++.+++++++.. ++|+++||++++|++|+.|.++++++++++| +++++..
T Consensus 56 ~l~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~-------ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p--~~~~v~~ 126 (727)
T PRK11234 56 ELYKPDEKPLAIMVPAWNETGVIGNMAELAATT-------LDYENYHIFVGTYPNDPATQADVDAVCARFP--NVHKVVC 126 (727)
T ss_pred hcccCCCCCEEEEEecCcchhhHHHHHHHHHHh-------CCCCCeEEEEEecCCChhHHHHHHHHHHHCC--CcEEEEe
Confidence 344556788999999999999999999998751 5788899999999999999999999999998 6665554
Q ss_pred CC--CCCHHHHHHHHHHHc---------CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346 139 GR--NHGKGEAIRKGMLHS---------RGELLLMLDADGATKVTDLEKLESQIHA 183 (283)
Q Consensus 139 ~~--~~gk~~a~n~g~~~a---------~~d~i~~~D~D~~~~~~~l~~~~~~~~~ 183 (283)
++ +.||+.|+|.|++.+ +.+++++.|||+.++|++|+ +++.+.+
T Consensus 127 ~~~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~ 181 (727)
T PRK11234 127 ARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVE 181 (727)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcC
Confidence 43 789999999999987 34678889999999999998 5666654
No 52
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=3.2e-18 Score=139.39 Aligned_cols=107 Identities=35% Similarity=0.561 Sum_probs=94.5
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (283)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk 144 (283)
.|++|||||+||+++.|.++|+|+++ |++..+|||||||||+|+|.++++++....+ .+.......+.|+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~--------q~~~~~eiivvddgs~d~t~~~~~~~~~~~~--~~~~~~~~~~~g~ 71 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLN--------QTYKDFEIIVVDDGSTDGTTEIAIEYGAKDV--RVIRLINERNGGL 71 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHh--------hhhcceEEEEEeCCCCCChHHHHHHHhhhcc--eEEEeecccCCCh
Confidence 57799999999999999999999999 5555689999999999999999999987653 5667777789999
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (283)
Q Consensus 145 ~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~ 182 (283)
+.|+|.|+..+.+++++++|+|+. .++.+..+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~~ 108 (291)
T COG0463 72 GAARNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAGG 108 (291)
T ss_pred HHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHhh
Confidence 999999999999999999999999 9999888555443
No 53
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.77 E-value=5.5e-19 Score=149.02 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=81.4
Q ss_pred EEEeecCCC-CChHHHHHHHHHHHHHh--hhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 023346 70 LIIPAFNEE-HRLPGALDETLNYLQQR--AAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (283)
Q Consensus 70 viip~~ne~-~~l~~~l~s~~~~~~~~--~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~ 146 (283)
||||+|||+ .+|+++|+|+++|.+.. .-.....++||+||||||+| .|.||..
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~gk~~ 56 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRGKRD 56 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCcchH
Confidence 799999997 79999999999943310 00000238999999999999 2455554
Q ss_pred -------HHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346 147 -------AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (283)
Q Consensus 147 -------a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 196 (283)
++|.++..+++|+++++|+|+.++|++|+++++.|..+|+.+.+.|....
T Consensus 57 ~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~ 113 (244)
T cd04190 57 SQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHP 113 (244)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEE
Confidence 67888888999999999999999999999999999888887666666544
No 54
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.77 E-value=1.8e-18 Score=148.81 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=81.4
Q ss_pred ecCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHH
Q 023346 74 AFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGM 152 (283)
Q Consensus 74 ~~ne-~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~ 152 (283)
+||. .+.|+++|+|+.+ | ..|||||||||+|+ +.++++....+ ++++++.++|.|.+.|+|.|+
T Consensus 2 tyn~~~~~l~~~l~sl~~--------q---~~~iiVVDN~S~~~--~~~~~~~~~~~--~i~~i~~~~N~G~a~a~N~Gi 66 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPK--------Q---VDRIIAVDNSPHSD--QPLKNARLRGQ--KIALIHLGDNQGIAGAQNQGL 66 (281)
T ss_pred ccCccHHHHHHHHHHHHh--------c---CCEEEEEECcCCCc--HhHHHHhccCC--CeEEEECCCCcchHHHHHHHH
Confidence 7997 4788999999887 3 35999999998765 22233333444 899999999999999999999
Q ss_pred HHc---CCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 153 LHS---RGELLLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 153 ~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
+.| .+|||+++|+|+.+++++|+++++.+++.+
T Consensus 67 ~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 67 DASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcC
Confidence 998 689999999999999999999999998765
No 55
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.75 E-value=2.5e-16 Score=148.92 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=97.7
Q ss_pred CCCCceEEEEEeecCCCC-----ChHHHHHHHHHHHHHhhhcCCC-CceEEEEEeCCCCcchHHH----HHHHHHHcC-C
Q 023346 62 DPAEKYISLIIPAFNEEH-----RLPGALDETLNYLQQRAAKDKS-FTYEVLIIDDGSSDGTKRV----AFDFVRKYT-V 130 (283)
Q Consensus 62 ~~~~p~vsviip~~ne~~-----~l~~~l~s~~~~~~~~~~~~~~-~~~eiivvdd~s~d~t~~~----~~~~~~~~~-~ 130 (283)
.+..|+|+|+||+|||+. .++.+++|+.+ +.+ +++|++|+||+++|++... +.++.++++ .
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~--------~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~ 191 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAA--------TGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGE 191 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh--------cCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCC
Confidence 355788999999999985 36666666665 333 5799999999999987643 345555553 2
Q ss_pred CcEEEEEcCCCCC-HHHHHHHHHHH--cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346 131 DNVRIILLGRNHG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD 193 (283)
Q Consensus 131 ~~~~~~~~~~~~g-k~~a~n~g~~~--a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (283)
.++.+.++..|.| |++++|.+++. +++||++++|||..+++|++.+++..|+.+|+.+++.+.
T Consensus 192 ~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~ 257 (691)
T PRK05454 192 GRIFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTL 257 (691)
T ss_pred CcEEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCC
Confidence 4788887776765 99999999998 567999999999999999999999999988887766543
No 56
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.74 E-value=7.5e-17 Score=136.20 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=97.4
Q ss_pred EEEEEeecCCCCC-hHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHH----HHHHHHHHcC-CCcEEEEEcCCC
Q 023346 68 ISLIIPAFNEEHR-LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR----VAFDFVRKYT-VDNVRIILLGRN 141 (283)
Q Consensus 68 vsviip~~ne~~~-l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~----~~~~~~~~~~-~~~~~~~~~~~~ 141 (283)
|||+||+|||+.. +.++|+++.+.+..+ +.++++||+|+||++++.... .+.++.++++ ..++++++.+++
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~---~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~ 77 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKT---GLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRREN 77 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhc---CCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 6999999999987 888888888765432 234789999999987765432 2233444443 247889998888
Q ss_pred CC-HHHHHHHHHHH--cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346 142 HG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (283)
Q Consensus 142 ~g-k~~a~n~g~~~--a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 194 (283)
.| |++++|.++.. +++|+|+++|+|..++|++|.+++..|..+|+.+++.+..
T Consensus 78 ~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~ 133 (254)
T cd04191 78 TGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAP 133 (254)
T ss_pred CCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 76 88999999987 7899999999999999999999999999888877665443
No 57
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.68 E-value=3.2e-16 Score=120.93 Aligned_cols=109 Identities=34% Similarity=0.509 Sum_probs=94.2
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n 149 (283)
|+||++|+.+.+.++++++.+ +.+.+.|++|+||++++.+.+.+.+...... ....+..+.+.|++.++|
T Consensus 1 iii~~~~~~~~l~~~l~s~~~--------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 70 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLA--------QTYPNFEVIVVDDGSTDGTLEILEEYAKKDP--RVIRVINEENQGLAAARN 70 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHh--------CCccceEEEEEeCCCCccHHHHHHHHHhcCC--CeEEEEecCCCChHHHHH
Confidence 689999999999999999988 5557899999999999999999988865422 567777777999999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188 (283)
Q Consensus 150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~ 188 (283)
.+++.+.+|+++++|+|..+.|+++..++..+...++..
T Consensus 71 ~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~ 109 (156)
T cd00761 71 AGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEAD 109 (156)
T ss_pred HHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCce
Confidence 999999999999999999999999999866666655543
No 58
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.68 E-value=1.8e-15 Score=142.31 Aligned_cols=114 Identities=11% Similarity=0.174 Sum_probs=92.0
Q ss_pred CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC
Q 023346 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN 141 (283)
Q Consensus 62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~ 141 (283)
....|.+||+||+|||+++|++++++++++ .+|+++||+|+.+..+.+|.+.++++...+| +++++..+.+
T Consensus 67 ~~~~~~vsIlVPa~nE~~VI~~~v~~ll~~-------ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p--~~~~v~~~~~ 137 (703)
T PRK15489 67 ERDEQPLAIMVPAWKEYDVIAKMIENMLAT-------LDYRRYVIFVGTYPNDAETITEVERMRRRYK--RLVRVEVPHD 137 (703)
T ss_pred ccCCCceEEEEeCCCcHHHHHHHHHHHHhc-------CCCCCeEEEEEecCCCccHHHHHHHHhccCC--cEEEEEcCCC
Confidence 445678999999999999999999998752 5688999999755555589999999888887 7887776544
Q ss_pred --CCHHHHHHHHHHHc-------CCCE--EEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 142 --HGKGEAIRKGMLHS-------RGEL--LLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 142 --~gk~~a~n~g~~~a-------~~d~--i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
.||+.|+|.|+..+ ++++ +++.|||+.++|+.|..+ +.+...+
T Consensus 138 gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~ 191 (703)
T PRK15489 138 GPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRK 191 (703)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCc
Confidence 78999999999875 3344 899999999999999876 5554333
No 59
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=99.46 E-value=2.7e-12 Score=109.35 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=113.5
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (283)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (283)
+..|.||||.|..+-.+.+-..+++... ..|+++|++++-+.++|+..++++++.++||....+++-..+..
T Consensus 82 ~~LPgVSiikPl~G~d~nl~~Nlesfft--------s~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~v 153 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVDPNLYHNLESFFT--------SQYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKV 153 (431)
T ss_pred CCCCCceEEeecccCCchhHHhHHHHHh--------hccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEccccc
Confidence 3688899999999999999999999988 34669999999999999999999999999997788888887777
Q ss_pred C---HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecCc
Q 023346 143 G---KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDST 200 (283)
Q Consensus 143 g---k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (283)
| |-.++--|.+.++.|+|++.|+|..+.||.+-.|...+.++...+.+.+.....|..
T Consensus 154 g~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~ 214 (431)
T KOG2547|consen 154 GLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQ 214 (431)
T ss_pred ccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccc
Confidence 7 555555588999999999999999999999999999999988888777766655543
No 60
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-12 Score=112.41 Aligned_cols=113 Identities=20% Similarity=0.210 Sum_probs=93.9
Q ss_pred CCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchH-HHHHHHHHHcCCCcEEEEEcCCC
Q 023346 64 AEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRN 141 (283)
Q Consensus 64 ~~p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~~~~~~~~~~ 141 (283)
..|.-||||..|||+ ..+-+++.|+++..... .-.|||+|||+|.|.+. ..+.++ + +++++++.++
T Consensus 122 dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~------li~EiILVDD~S~Dped~~~L~ri----~--kvr~LRN~~R 189 (559)
T KOG3738|consen 122 DLPPTSVIITFHNEARSTLLRTVVSVLNRSPEH------LIHEIILVDDFSQDPEDGKLLKRI----P--KVRVLRNNER 189 (559)
T ss_pred CCCCceEEEEeccHHHHHHHHHHHHHHcCChHH------hhheeEEecCCCCChHHHHHHhhh----h--eeeeecccch
Confidence 467789999999996 56778888888743322 24699999999998764 333333 3 8999999999
Q ss_pred CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346 142 HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188 (283)
Q Consensus 142 ~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~ 188 (283)
.|.-..+++|...|++.++.|+|+.+.+..+||+-+++.++.+...+
T Consensus 190 eGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trv 236 (559)
T KOG3738|consen 190 EGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRV 236 (559)
T ss_pred hhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccce
Confidence 99999999999999999999999999999999999999998876653
No 61
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=8.4e-13 Score=120.73 Aligned_cols=127 Identities=24% Similarity=0.251 Sum_probs=105.1
Q ss_pred CCCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcch-HHHHHHHHHHcCCCcEEEEEcCC
Q 023346 63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDFVRKYTVDNVRIILLGR 140 (283)
Q Consensus 63 ~~~p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~ 140 (283)
...|..||||+.|||+ ..+.+++.|+++.... ..--|||+|||+|+..- ...++++.+.+. .+++++.++
T Consensus 139 ~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~------~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~--~v~i~r~~~ 210 (578)
T KOG3736|consen 139 DKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPP------YLLKEIILVDDFSDRDHLKDKLEEYVKRFS--KVRILRTKK 210 (578)
T ss_pred cccCCCceEEEEecCCCcchhheEEeehccCCh------hHeEEEEEeecCcchhhhhhhhHHHHhhhc--ceeEEeecc
Confidence 4578899999999996 5677788888874432 23569999999998765 566888888877 499999999
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeec
Q 023346 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVD 198 (283)
Q Consensus 141 ~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 198 (283)
+.|.-.|+..|.+.|+||+++|+|+.+....+||+-+++.+...... ++++.....+
T Consensus 211 R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~t-vv~PvID~Id 267 (578)
T KOG3736|consen 211 REGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKT-VVCPVIDVID 267 (578)
T ss_pred hhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCce-eecceEEeec
Confidence 99999999999999999999999999999999999999999887665 4455444444
No 62
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=99.36 E-value=8e-12 Score=108.44 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=84.6
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC----CCC
Q 023346 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR----NHG 143 (283)
Q Consensus 68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~----~~g 143 (283)
+.|+|.+||+.+.++++|++++++- ....+.+|+|.+||+++++.+.++.+. ..++++..+. +.|
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~------p~~~~~~liIs~DG~~~~~~~~v~~~~-----~~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYR------PSAEKFPIIVSQDGGYEEVADVAKSFG-----DGVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhcc------ccCCCceEEEEeCCCchHHHHHHHhhc-----cccEEEEcccccccccC
Confidence 4799999999999999999999821 156689999999999998888887763 1466665532 211
Q ss_pred ----------HH----HHHHHHHHHcCCCEEEEEeCCCCCChhhH---HHHHHHHHHcCCcc
Q 023346 144 ----------KG----EAIRKGMLHSRGELLLMLDADGATKVTDL---EKLESQIHAVGRKE 188 (283)
Q Consensus 144 ----------k~----~a~n~g~~~a~~d~i~~~D~D~~~~~~~l---~~~~~~~~~~~~~~ 188 (283)
-+ .|+|.++...+++.++++++|+.+.|+++ ++++..+++++...
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~ 132 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW 132 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE
Confidence 12 38999998889999999999999999955 66666666665544
No 63
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.2e-11 Score=103.50 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=98.7
Q ss_pred CCCCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcc-hHHHHHHHHHHcCCCcEEEEEcC
Q 023346 62 DPAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLG 139 (283)
Q Consensus 62 ~~~~p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~ 139 (283)
+...|..||||..+||. ..|-+++.|++..... .---|||+|||-|+.+ ..+.+.++...+. .-++|++++
T Consensus 151 pe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~------~~l~eivlvDDfSdKehLkekLDeYv~~fn-GlVkV~Rne 223 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPR------KYLAEIVLVDDFSDKEHLKEKLDEYVKLFN-GLVKVFRNE 223 (603)
T ss_pred cccCCcceEEEEEecCccHHHHHHHHHHHhcCcH------HhhheEEEeccCCccHHHHHHHHHHHHHhc-CEEEEEecc
Confidence 34678899999999996 6788889998873222 1246999999998866 5577888877765 468999999
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 140 ~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
++.|.-.|+..|.++|.|++++|+||.|.+..+||.-+++.+.++..
T Consensus 224 ~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRt 270 (603)
T KOG3737|consen 224 RREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRT 270 (603)
T ss_pred hhhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCce
Confidence 99999999999999999999999999999999999999999977543
No 64
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.77 E-value=7e-07 Score=80.09 Aligned_cols=130 Identities=20% Similarity=0.205 Sum_probs=87.2
Q ss_pred eEEEEEeecCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHH-----HHHH-cCCCcEEEEEcC
Q 023346 67 YISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD-----FVRK-YTVDNVRIILLG 139 (283)
Q Consensus 67 ~vsviip~~ne~~-~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~-----~~~~-~~~~~~~~~~~~ 139 (283)
+-.|++|+|||.. .+-.-|+...+++.. .-....+++.|+.| |.|+.....++ +.++ ....++-+-++.
T Consensus 145 rTAilmPiynEd~~rVfAgLrA~~eSla~---Tg~~~~FD~FVLSD-s~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr 220 (736)
T COG2943 145 RTAILMPIYNEDVNRVFAGLRATYESLAA---TGHAEHFDFFVLSD-SRDPDIALAEQKAWAELCRELGGEGNIFYRRRR 220 (736)
T ss_pred ceeEEeeccccCHHHHHHHHHHHHHHHHh---hCCcccceEEEEcC-CCCchhhhhHHHHHHHHHHHhCCCCceeeehHh
Confidence 3689999999963 222333443333332 12456899999988 44544433332 2222 223467676666
Q ss_pred CCCC-HHHHHHHHHHH--cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecCc
Q 023346 140 RNHG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDST 200 (283)
Q Consensus 140 ~~~g-k~~a~n~g~~~--a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (283)
+|.| |++++..=.+. ..+++.+++|+|..+.++.+.++++.++.+|+++.....+....+.
T Consensus 221 ~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~ 284 (736)
T COG2943 221 RNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGD 284 (736)
T ss_pred hhhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcc
Confidence 6755 77777665555 4679999999999999999999999999999998776655554433
No 65
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=1.7e-07 Score=76.91 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=70.9
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC---C
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN---H 142 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~---~ 142 (283)
+.++++||.--. +..+.|-..++..+.....=++....++|+++..+.-. ..++.+....+ ++.++..... .
T Consensus 2 ~~~~~iiPv~~S-~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d--~~i~~~i~~~~--~~~yl~~~s~~~F~ 76 (346)
T COG4092 2 QPNGEIIPVAES-EELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD--RLIRSYIDPMP--RVLYLDFGSPEPFA 76 (346)
T ss_pred CCcceEeecchh-hccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH--HHHHHHhcccc--ceEEEecCCCcccc
Confidence 457899998543 33334444444422211122567789999998876322 44556665555 6666665432 2
Q ss_pred CHHHHHHHHHHHcC----CCEEEEEeCCCCCChhhHHHHHHHH
Q 023346 143 GKGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKLESQI 181 (283)
Q Consensus 143 gk~~a~n~g~~~a~----~d~i~~~D~D~~~~~~~l~~~~~~~ 181 (283)
..+...|.|+..+. +++|+|+|.||....+-.++++.-+
T Consensus 77 s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~ 119 (346)
T COG4092 77 SETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIA 119 (346)
T ss_pred chhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHH
Confidence 24667788887765 8999999999999988888777443
No 66
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=98.46 E-value=1.2e-07 Score=75.72 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=47.9
Q ss_pred EEEEcCCCC---CHHHHHHHHHHH-cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346 134 RIILLGRNH---GKGEAIRKGMLH-SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD 193 (283)
Q Consensus 134 ~~~~~~~~~---gk~~a~n~g~~~-a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (283)
+++..+... +|..++..++++ +++|+++++|+|..++|++|++++..+++ |+.+++.+.
T Consensus 5 ~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~vglVt~~ 67 (175)
T PF13506_consen 5 RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLAD-PGVGLVTGL 67 (175)
T ss_pred EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhC-CCCcEEEec
Confidence 355554443 499999999998 99999999999999999999999999987 555554443
No 67
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=98.45 E-value=8.9e-07 Score=63.43 Aligned_cols=82 Identities=27% Similarity=0.237 Sum_probs=57.0
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC---H-HHHHHH
Q 023346 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG---K-GEAIRK 150 (283)
Q Consensus 75 ~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g---k-~~a~n~ 150 (283)
+||+..|++.|+..++ -.--+++|+||||+|+|.++++++ + .+.++....... . ...++.
T Consensus 1 rne~~~L~~wl~~~~~----------lG~d~i~i~d~~s~D~t~~~l~~~----~--~v~i~~~~~~~~~~~~~~~~~~~ 64 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLA----------LGVDHIYIYDDGSTDGTREILRAL----P--GVGIIRWVDPYRDERRQRAWRNA 64 (97)
T ss_pred CChHHHHHHHHHHHHH----------cCCCEEEEEECCCCccHHHHHHhC----C--CcEEEEeCCCccchHHHHHHHHH
Confidence 5888888888877755 223479999999999999998776 2 566666543221 2 233344
Q ss_pred HHHH-cCCCEEEEEeCCCCCChh
Q 023346 151 GMLH-SRGELLLMLDADGATKVT 172 (283)
Q Consensus 151 g~~~-a~~d~i~~~D~D~~~~~~ 172 (283)
..+. ..++|++++|+|-.+.+.
T Consensus 65 ~~~~~~~~dWvl~~D~DEfl~~~ 87 (97)
T PF13704_consen 65 LIERAFDADWVLFLDADEFLVPP 87 (97)
T ss_pred HHHhCCCCCEEEEEeeeEEEecC
Confidence 4444 478999999999887543
No 68
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.15 E-value=4e-06 Score=69.26 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=60.7
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 023346 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (283)
Q Consensus 68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a 147 (283)
||||+++ |.+....+|++++.+ +..++.|.|-+++ .....+.+.+
T Consensus 1 isiI~c~-n~~~~~~~~~~~i~~--------~~~~~~~~i~i~~--------------------------~~~~~s~~~~ 45 (217)
T PF13712_consen 1 ISIIICV-NDEELYEECLRSIKR--------LIGPPGELIEIDN--------------------------VRNAKSMAAA 45 (217)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHHH--------TT--TEEEEEEE---------------------------SSS-S-TTTH
T ss_pred CEEEEEE-CCHHHHHHHHHHHHh--------hCCCCceEEEEec--------------------------cCCCcCHHHH
Confidence 4666654 666667788888776 4455667665543 3334788899
Q ss_pred HHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCCccc
Q 023346 148 IRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVGRKEY 189 (283)
Q Consensus 148 ~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~~~~ 189 (283)
.|.|+++|+++|++|++.|..+ .++++..+++.|+++++.++
T Consensus 46 yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~ 88 (217)
T PF13712_consen 46 YNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGM 88 (217)
T ss_dssp HHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEE
T ss_pred HHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccE
Confidence 9999999999999999999998 68999999999988877644
No 69
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.10 E-value=6.8e-05 Score=69.17 Aligned_cols=127 Identities=19% Similarity=0.272 Sum_probs=85.0
Q ss_pred CceEEEEEeecCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCC------CCcchHHHHHHHHHHc------C--
Q 023346 65 EKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG------SSDGTKRVAFDFVRKY------T-- 129 (283)
Q Consensus 65 ~p~vsviip~~ne-~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~------s~d~t~~~~~~~~~~~------~-- 129 (283)
.+.+-.+||+||| ++.|+++|+|+..+ +++..+-=|+||.|| .+-.|.+++.++.... +
T Consensus 24 ~~~~i~~v~cy~E~~~~l~~tldsl~~~------~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~ 97 (527)
T PF03142_consen 24 DKFVICLVPCYSEGEEELRTTLDSLATT------DYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEP 97 (527)
T ss_pred CceEEEEEccccCChHHHHHHHHHHHhc------CCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCC
Confidence 3446679999999 57888899998762 233334445555553 3445888887765510 0
Q ss_pred --------------------------C------------CcEEEEE----------cCCCCCHHHHHHHHHH--------
Q 023346 130 --------------------------V------------DNVRIIL----------LGRNHGKGEAIRKGML-------- 153 (283)
Q Consensus 130 --------------------------~------------~~~~~~~----------~~~~~gk~~a~n~g~~-------- 153 (283)
. +-+.++. .++|+||.-..-..+.
T Consensus 98 ~~~~~~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~ 177 (527)
T PF03142_consen 98 LSYVSLGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFN 177 (527)
T ss_pred cceEEeccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcC
Confidence 0 1123333 3668887754322111
Q ss_pred ---------------H------cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceee
Q 023346 154 ---------------H------SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTV 197 (283)
Q Consensus 154 ---------------~------a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 197 (283)
. ...|+++.+|||+.+.|+.+.++++.+.+++..+.++|.....
T Consensus 178 ~~~~~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~ 242 (527)
T PF03142_consen 178 NPMTPLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRID 242 (527)
T ss_pred CCCchHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEc
Confidence 1 1359999999999999999999999999999988888864443
No 70
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=98.02 E-value=0.00018 Score=66.73 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=89.0
Q ss_pred CCCceEEEEEeecCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC-Ccc-----hHHHHHHHHHHcCCCcEEE
Q 023346 63 PAEKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDG-----TKRVAFDFVRKYTVDNVRI 135 (283)
Q Consensus 63 ~~~p~vsviip~~ne-~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s-~d~-----t~~~~~~~~~~~~~~~~~~ 135 (283)
.....|.||||..+. .+.+.+-|+...+.+. ++..+..++||..++ .|. ..+.++++..+++..++.+
T Consensus 244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l-----~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~ 318 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREADWFRRFLENFEKVCL-----ETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKW 318 (499)
T ss_pred cCCCEEEEEEEecCccHHHHHHHHHHHHHHhc-----ccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEE
Confidence 445789999999999 7777777777555332 245577777777665 322 2357778888887778999
Q ss_pred EEcC-CCCCHHHHHHHHHHHcC-CCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 136 ILLG-RNHGKGEAIRKGMLHSR-GELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 136 ~~~~-~~~gk~~a~n~g~~~a~-~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
+... ++...+.++..|++... .++++++|.|..+++++|.++-..-..+
T Consensus 319 i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g 369 (499)
T PF05679_consen 319 ISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPG 369 (499)
T ss_pred EEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcC
Confidence 9987 77889999999998654 5788899999999999999987665443
No 71
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=97.90 E-value=9.1e-05 Score=63.94 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=81.6
Q ss_pred CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC-CcchH--HHHHHHHHHcCCCcEEEEEc
Q 023346 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTK--RVAFDFVRKYTVDNVRIILL 138 (283)
Q Consensus 62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~--~~~~~~~~~~~~~~~~~~~~ 138 (283)
.-..|.|.+++|..++.....+...++.. -...+++++|+-=|+ .|+-. +....+..+++ ++..+..
T Consensus 225 ~i~~pgih~i~pl~gr~~~f~rf~q~~c~--------~~d~~l~l~vv~f~~se~e~ak~e~~tslra~f~--~~q~l~l 294 (494)
T KOG3588|consen 225 LIEDPGIHMIMPLRGRAAIFARFAQSICA--------RGDDRLALSVVYFGYSEDEMAKRETITSLRASFI--PVQFLGL 294 (494)
T ss_pred cccCCCceEEEeccchHHHhhhhhHHHhc--------cCCCceEEEEEEecCCChHHHhhhHHHHHhhcCC--ceEEecc
Confidence 34566799999999999888888886665 356678888876665 33322 44556777777 7777776
Q ss_pred CCCCCHHHHHHHHHHHcCCCE-EEEEeCCCCCChhhHHHHHHH
Q 023346 139 GRNHGKGEAIRKGMLHSRGEL-LLMLDADGATKVTDLEKLESQ 180 (283)
Q Consensus 139 ~~~~gk~~a~n~g~~~a~~d~-i~~~D~D~~~~~~~l~~~~~~ 180 (283)
.+....+.|+-.|.+.-+.+. +.|+|-|..+..++|.+.-..
T Consensus 295 ngeFSRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~N 337 (494)
T KOG3588|consen 295 NGEFSRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLN 337 (494)
T ss_pred cchhhhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHhhc
Confidence 666778899999999986655 556899999999999887543
No 72
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.79 E-value=0.00021 Score=64.14 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=64.7
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC---
Q 023346 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--- 139 (283)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--- 139 (283)
...+.+-|+|-+||+...+.+||+++++.- -..+.+.|+|..||++..+.+.++.+... ++.++.+
T Consensus 90 ~~~~~~pVlV~AcNRp~yl~r~L~sLl~~r------p~~~~fpIiVSQDg~~~~~~~vi~~y~~~-----v~~i~~~~~~ 158 (434)
T PF03071_consen 90 NKEPVIPVLVFACNRPDYLRRTLDSLLKYR------PSAEKFPIIVSQDGDDEEVAEVIKSYGDQ-----VTYIQHPDFS 158 (434)
T ss_dssp -------EEEEESS-TT-HHHHHHHHHHH-------S-TTTS-EEEEE-TT-HHHHHHHHGGGGG-----SEEEE-S--S
T ss_pred cCCCcceEEEEecCCcHHHHHHHHHHHHcC------CCCCCccEEEEecCCcHHHHHHHHHhhhh-----heeeecCCcC
Confidence 345668899999999999999999999821 12356889999999999999888877432 3333322
Q ss_pred ------CC-CC---------HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346 140 ------RN-HG---------KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (283)
Q Consensus 140 ------~~-~g---------k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~ 182 (283)
.. .. ...|++..+..-+.+.++++..|..+.||+++-+.+...
T Consensus 159 ~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ 217 (434)
T PF03071_consen 159 PITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLP 217 (434)
T ss_dssp -----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHH
T ss_pred CceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHH
Confidence 11 00 123344444444678999999999999999776655543
No 73
>PLN02893 Cellulose synthase-like protein
Probab=97.76 E-value=0.0004 Score=66.13 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHH----cCCCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346 143 GKGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHA 183 (283)
Q Consensus 143 gk~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~ 183 (283)
-|++|+|.+++. ++|++|+.+|+|..+ .|+.+++.+-.|.+
T Consensus 281 ~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~D 326 (734)
T PLN02893 281 FKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLD 326 (734)
T ss_pred cccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcC
Confidence 399999999996 689999999999996 69999999988864
No 74
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.65 E-value=0.0014 Score=55.36 Aligned_cols=125 Identities=17% Similarity=0.112 Sum_probs=82.9
Q ss_pred CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC--cchHHHHHHHHHHcC--------CC
Q 023346 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS--DGTKRVAFDFVRKYT--------VD 131 (283)
Q Consensus 62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~--------~~ 131 (283)
....++|-|+.|..|.+..+.+.++.+.+ +.||...+.+-++...++ |.|.+.+++...+.. -.
T Consensus 21 ~~~~e~VLILtplrna~~~l~~y~~~L~~------L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~ 94 (269)
T PF03452_consen 21 ARNKESVLILTPLRNAASFLPDYFDNLLS------LTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFR 94 (269)
T ss_pred cccCCeEEEEEecCCchHHHHHHHHHHHh------CCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcc
Confidence 45677899999999999999888888887 446777788866666666 888888875543321 12
Q ss_pred cEEEEEcCCC--------------------CCHHHHHHHHHHHc---CCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCCc
Q 023346 132 NVRIILLGRN--------------------HGKGEAIRKGMLHS---RGELLLMLDADGAT-KVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 132 ~~~~~~~~~~--------------------~gk~~a~n~g~~~a---~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~~ 187 (283)
.+.+++.+-. .--+.|+|..+..+ ..+||+++|+|..- +|+.|+.+ -.++.+
T Consensus 95 ~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dl----i~~~kd 170 (269)
T PF03452_consen 95 SITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDL----IAHDKD 170 (269)
T ss_pred eEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHH----HhCCCC
Confidence 5666654311 11356778877765 45999999999887 44445444 444444
Q ss_pred ccccccceee
Q 023346 188 EYNHGDSVTV 197 (283)
Q Consensus 188 ~~~~~~~~~~ 197 (283)
++.+.+...
T Consensus 171 -IivPn~~~~ 179 (269)
T PF03452_consen 171 -IIVPNCWRR 179 (269)
T ss_pred -EEccceeec
Confidence 444444444
No 75
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=97.64 E-value=0.00015 Score=59.32 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=59.3
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 023346 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (283)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~ 146 (283)
+|+||||-+|+++.|...|..+..-+..| ...+.|+|+..- .....+++.
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq-----~~~~~i~vi~Q~-------------------------~~~~FNR~~ 52 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQ-----QLDYRIFVIEQV-------------------------GNFRFNRAK 52 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhc-----CCcEEEEEEEec-------------------------CCccchhhh
Confidence 58999999999999988888888766643 346677776531 012467888
Q ss_pred HHHHHHHHc----CCCEEEEEeCCCCCChhhHH
Q 023346 147 AIRKGMLHS----RGELLLMLDADGATKVTDLE 175 (283)
Q Consensus 147 a~n~g~~~a----~~d~i~~~D~D~~~~~~~l~ 175 (283)
.+|.|...| ..++++|-|.|..+..+.+.
T Consensus 53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~ 85 (219)
T cd00899 53 LLNVGFLEALKDGDWDCFIFHDVDLLPENDRNL 85 (219)
T ss_pred hhhHHHHHHhhcCCccEEEEecccccccCcccc
Confidence 889888766 35899999999999887743
No 76
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.53 E-value=0.0027 Score=55.08 Aligned_cols=104 Identities=19% Similarity=0.306 Sum_probs=63.3
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC---cc---hHHHHHHHHHHcCCCcEEEEEcCC
Q 023346 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DG---TKRVAFDFVRKYTVDNVRIILLGR 140 (283)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~---d~---t~~~~~~~~~~~~~~~~~~~~~~~ 140 (283)
+.+||||+.||.- ..|+-++..+ +.+.-||||.|++. |. -.+.++++...-. ..+-++++..
T Consensus 51 ~maIVVP~KnE~l---~lleGVL~gI--------Ph~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~-r~~~~vHQkD 118 (381)
T PF09488_consen 51 KMAIVVPCKNEKL---KLLEGVLSGI--------PHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTR-RQIIIVHQKD 118 (381)
T ss_dssp TEEEEEEESS--H---HHHHHHHHCS---------TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT---EEEEETT-
T ss_pred CcEEEEECCCCch---hhhhhhhhcC--------CCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhc-CceEEEecCC
Confidence 4899999999984 5578888733 33678999999877 44 2355666654322 2455555421
Q ss_pred ----------------------CCCHHHHHHHHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346 141 ----------------------NHGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHA 183 (283)
Q Consensus 141 ----------------------~~gk~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~ 183 (283)
+.||+.++-.|+..| ..+||.|+|||..+ |+.+.+-++.+..
T Consensus 119 p~lA~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyi-PGaV~EYvk~yAA 185 (381)
T PF09488_consen 119 PGLAEAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYI-PGAVNEYVKDYAA 185 (381)
T ss_dssp HHHHHHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCC-cchHHHHHHHHHh
Confidence 368999999888665 46999999999987 4556666666654
No 77
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=97.36 E-value=0.00013 Score=58.85 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=30.8
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346 159 LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (283)
Q Consensus 159 ~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 196 (283)
||+++|+|+.++|++++++++.++ +|+.+++.+....
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~ 37 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIF 37 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEe
Confidence 689999999999999999999998 6776666555543
No 78
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=97.33 E-value=0.0015 Score=55.69 Aligned_cols=103 Identities=20% Similarity=0.207 Sum_probs=76.5
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEE-------E
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRI-------I 136 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~-------~ 136 (283)
.+-..+-.|-+.||+..|+++|+|++..+. |.|+.=+.|+|+|.+++.+++.++|. -+.+ +
T Consensus 85 ~pl~~~~~iRvKnE~~tl~~si~S~Lpai~-----------~gVI~yNdc~D~t~Eiil~fckkyP~-fip~~Ypy~v~~ 152 (347)
T PF06306_consen 85 SPLNPWAFIRVKNEAMTLAESIESILPAID-----------EGVIGYNDCTDGTEEIILEFCKKYPS-FIPIKYPYEVII 152 (347)
T ss_pred CCCCcceEEEEcchhhhHHHHHHHHHHHHh-----------ccEEEeecCCCCHHHHHHHHHHhCcc-cccccCcchhhc
Confidence 334478899999999999999999998654 78888888999999999999999983 2222 1
Q ss_pred EcCCC--CCHHHHHHHHHHHc-CCCEEEEEeCCCCCChhhHHHHH
Q 023346 137 LLGRN--HGKGEAIRKGMLHS-RGELLLMLDADGATKVTDLEKLE 178 (283)
Q Consensus 137 ~~~~~--~gk~~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~~~ 178 (283)
.+++. -....=.|.++... +.+|++=+|+|-...+..|-+..
T Consensus 153 ~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksf 197 (347)
T PF06306_consen 153 KNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSF 197 (347)
T ss_pred cCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhh
Confidence 11111 11333446666664 68999999999999998874443
No 79
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=97.27 E-value=0.0037 Score=52.07 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=61.1
Q ss_pred CCCCceEEEEEeC-CCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc---CCCEEEE--EeCCCCCChh
Q 023346 99 DKSFTYEVLIIDD-GSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS---RGELLLM--LDADGATKVT 172 (283)
Q Consensus 99 ~~~~~~eiivvdd-~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a---~~d~i~~--~D~D~~~~~~ 172 (283)
|+..++..+|+-| ...+.-.+.++++.+..| +++++..+ ......++..+++.+ .+++++. +|+|+.+..+
T Consensus 54 QTd~dF~~lv~~~~~~P~~~~~rL~~l~~~~p--~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~RLDdDDAl~~d 130 (234)
T PF11316_consen 54 QTDQDFTWLVLFDDDLPEPYRERLRDLLADYP--QFRIVFRP-PGPHRDAMRRAINAARRDGADPVLQFRLDDDDALHRD 130 (234)
T ss_pred ccCCCeEEEEEECCCCCHHHHHHHHHHhccCC--CcEEEecC-CchHHHHHHHHHhhhccCCCCEEEEEEECCcchhhHH
Confidence 7888999998554 455556778889888888 77777766 334667777776433 3455554 5999999999
Q ss_pred hHHHHHHHHHH
Q 023346 173 DLEKLESQIHA 183 (283)
Q Consensus 173 ~l~~~~~~~~~ 183 (283)
+++++-+...+
T Consensus 131 FV~rlr~~a~~ 141 (234)
T PF11316_consen 131 FVARLRRAAAD 141 (234)
T ss_pred HHHHHHHHHHh
Confidence 99999998854
No 80
>PLN02195 cellulose synthase A
Probab=97.02 E-value=0.015 Score=57.06 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=34.0
Q ss_pred HHHHHHHHHHH----cCCCEEEEEeCCCCCCh-hhHHHHHHHHHH
Q 023346 144 KGEAIRKGMLH----SRGELLLMLDADGATKV-TDLEKLESQIHA 183 (283)
Q Consensus 144 k~~a~n~g~~~----a~~d~i~~~D~D~~~~~-~~l~~~~~~~~~ 183 (283)
|++|+|.+++. +.+++|+.+|+|..+.+ +++++.+=.|.+
T Consensus 437 KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D 481 (977)
T PLN02195 437 KAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMD 481 (977)
T ss_pred ccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccC
Confidence 99999999985 46999999999988865 688888877754
No 81
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=96.93 E-value=0.025 Score=56.15 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH----cCCCEEEEEeCCCCCC-hhhHHHHHHHHHH
Q 023346 144 KGEAIRKGMLH----SRGELLLMLDADGATK-VTDLEKLESQIHA 183 (283)
Q Consensus 144 k~~a~n~g~~~----a~~d~i~~~D~D~~~~-~~~l~~~~~~~~~ 183 (283)
|++|+|..++. +.++||+.+|+|..+. |..+++.+=.|-+
T Consensus 534 KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lD 578 (1079)
T PLN02638 534 KAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMD 578 (1079)
T ss_pred ccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcC
Confidence 99999999965 4799999999999886 9999998887764
No 82
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=96.93 E-value=0.015 Score=50.28 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=67.8
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcc------hHHHHHHHHHHcCCCcEEEEEcC
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG------TKRVAFDFVRKYTVDNVRIILLG 139 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~------t~~~~~~~~~~~~~~~~~~~~~~ 139 (283)
-+..||||+.||.-. +|+-++..+ +.+.-||||.|++..+ ..+.++++..--. ..+-++++.
T Consensus 50 ~~maIVVP~KdE~l~---lleGVL~gI--------Ph~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~-r~~i~vHQk 117 (381)
T TIGR02460 50 GKTAIVVPVKNEKLH---LLEGVLSGI--------PHECPIIIVSNSKREPPDRFKMEVDLIRHFSNLTH-RKIIIIHQK 117 (381)
T ss_pred hCcEEEEEcCCCchh---HHhhHhhcC--------CCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHhhc-CceEEEEcC
Confidence 358999999999854 477777733 3367788888876522 2244555544211 234444432
Q ss_pred ----------------------CCCCHHHHHHHHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346 140 ----------------------RNHGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHA 183 (283)
Q Consensus 140 ----------------------~~~gk~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~ 183 (283)
-+.||+.++-.|+..| ..+||.|+|||..++ +...+-+..+..
T Consensus 118 Dp~la~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiP-GaV~EYvk~yAa 185 (381)
T TIGR02460 118 DPALAEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFP-GAVNEYVKIYAA 185 (381)
T ss_pred CHHHHHHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCC-chHHHHHHHHHh
Confidence 1357888888887665 469999999999885 555555555544
No 83
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=96.92 E-value=0.015 Score=50.60 Aligned_cols=105 Identities=18% Similarity=0.302 Sum_probs=67.5
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC---cc---hHHHHHHHHHHcCCCcEEEEEcC
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DG---TKRVAFDFVRKYTVDNVRIILLG 139 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~---d~---t~~~~~~~~~~~~~~~~~~~~~~ 139 (283)
-+..||||+.||.-. +|+-++..+ +.+.-||||.|++. |. ..+.++++..--. ..+-++++.
T Consensus 51 ~~mAIVVP~KdE~l~---lleGVL~gI--------Ph~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~-r~~i~vHQk 118 (393)
T PRK14503 51 GRMAIVVPVKNERLK---LLEGVLKGI--------PHECPIIVVSNSKREPPDRFKLEVDLVRHFYRLTQ-RPIIIVHQK 118 (393)
T ss_pred hCcEEEEEcCCCchh---HHhhHhhcC--------CCCCeEEEEeCCCCCCchHHHHHHHHHHHHHhhhc-CceEEEEcC
Confidence 358999999999854 477777733 23577888888755 22 2244555543221 234444432
Q ss_pred C----------------------CCCHHHHHHHHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346 140 R----------------------NHGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHA 183 (283)
Q Consensus 140 ~----------------------~~gk~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~ 183 (283)
. +.||+.++-.|+..| ..+||.|+|||..++ +...+-+..+..
T Consensus 119 Dp~la~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiP-GaV~EYvk~yAA 186 (393)
T PRK14503 119 DPGLAEALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIP-GAVNEYVKIYAA 186 (393)
T ss_pred CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCC-chHHHHHHHHHh
Confidence 1 357888888887665 469999999999885 555555555544
No 84
>PLN02190 cellulose synthase-like protein
Probab=96.84 E-value=0.017 Score=55.24 Aligned_cols=41 Identities=12% Similarity=0.044 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH----cCCCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346 144 KGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHAV 184 (283)
Q Consensus 144 k~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~ 184 (283)
|++|+|..++. +.+++|+.+|+|... .|+.+++.+=.|-+.
T Consensus 270 KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~ 315 (756)
T PLN02190 270 KAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQK 315 (756)
T ss_pred ccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCC
Confidence 99999999876 479999999999988 788888877766543
No 85
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=96.75 E-value=0.0019 Score=55.37 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=70.3
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC------
Q 023346 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR------ 140 (283)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~------ 140 (283)
.|.||||+-+.. |.+.+++..+. ..++++|||-|+...+...+.+-+ ...+.....
T Consensus 9 ~~divi~~~~~~------l~~~~~~wr~~-----~~~~hliiv~d~~~~~~~~~p~g~-------~~~~y~~~di~~~lg 70 (348)
T PF03214_consen 9 EVDIVIPALRPN------LTDFLEEWRPF-----FSPYHLIIVQDPDPNEEIKVPEGF-------DYEVYNRNDIERVLG 70 (348)
T ss_pred cccEEeeccccc------HHHHHHHHHHh-----hcceeEEEEeCCCccccccCCccc-------ceeeecHhhHHhhcC
Confidence 489999997643 44555554442 348999999998655544443322 233333221
Q ss_pred -----CCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346 141 -----NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188 (283)
Q Consensus 141 -----~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~ 188 (283)
.....+.+|.|.-.++.+|++++|+|+.+..+..-..++.+.++....
T Consensus 71 ~~~~i~~~~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~ 123 (348)
T PF03214_consen 71 AKTLIPFKGDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENL 123 (348)
T ss_pred CcccccccccchhhhHhhhcccceEEEEccccccccCCccceehhhhccceee
Confidence 122446789999999999999999999999888777777777765443
No 86
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=96.64 E-value=0.086 Score=44.11 Aligned_cols=110 Identities=20% Similarity=0.140 Sum_probs=75.1
Q ss_pred EEEEEeecCCCCChHHHHH-HHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCC--cEEEEEcCCC-CC
Q 023346 68 ISLIIPAFNEEHRLPGALD-ETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVD--NVRIILLGRN-HG 143 (283)
Q Consensus 68 vsviip~~ne~~~l~~~l~-s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~--~~~~~~~~~~-~g 143 (283)
+=|..-.||.++.++.... ++++.+... -..+.-|-|+++||+|+|.+.++.+....... +-++...+.. ..
T Consensus 2 ~fIA~~l~~~~~iL~~~~~~~ll~li~~L----Gp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~ 77 (241)
T PF11735_consen 2 YFIAANLYNNEDILPSLWGDALLELIRFL----GPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRD 77 (241)
T ss_pred EEEEEEcccCHhHHHHHHHHHHHHHHHHh----CcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccc
Confidence 3455567899999988777 777766654 34578888999999999999999887443211 2223332111 11
Q ss_pred -------------HHHHHHHHHHHc---------CCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346 144 -------------KGEAIRKGMLHS---------RGELLLMLDADGATKVTDLEKLESQIH 182 (283)
Q Consensus 144 -------------k~~a~n~g~~~a---------~~d~i~~~D~D~~~~~~~l~~~~~~~~ 182 (283)
.+.-+|.|++-- +.+-|+|++ |..+.+..+-+++..-.
T Consensus 78 ~~~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~ 137 (241)
T PF11735_consen 78 EIERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRN 137 (241)
T ss_pred cccccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcC
Confidence 357889988532 247799999 88888888777776654
No 87
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=96.35 E-value=0.037 Score=45.74 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=64.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|.-+ ...+..+++++.+ ..-.+++||-.... +.++++..+. +++++..+...|.+.++-.
T Consensus 20 l~~v~g-kpli~~~i~~l~~----------~~i~~i~iv~~~~~----~~i~~~~~~~---~~~~~~~~~~~g~~~ai~~ 81 (229)
T cd02540 20 LHPLAG-KPMLEHVLDAARA----------LGPDRIVVVVGHGA----EQVKKALANP---NVEFVLQEEQLGTGHAVKQ 81 (229)
T ss_pred cceeCC-ccHHHHHHHHHHh----------CCCCeEEEEECCCH----HHHHHHhCCC---CcEEEECCCCCCCHHHHHH
Confidence 344434 4777777777765 22346666653222 2233333222 5777777767889999999
Q ss_pred HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHHcC
Q 023346 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~ 185 (283)
|+.... .+.++++++|. .+.+..+.++++.+.+.+
T Consensus 82 a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~ 119 (229)
T cd02540 82 ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAG 119 (229)
T ss_pred HHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcC
Confidence 998765 68999999998 568899999998887643
No 88
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=96.33 E-value=0.018 Score=43.25 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=52.7
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (283)
+.-++.||||-+|+++.|...|..+..-+..| ...+.|+||.... .....
T Consensus 45 ~~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ-----~~~y~I~vieQ~~-------------------------~~~FN 94 (136)
T PF13733_consen 45 PRHKVAIIIPYRDREEHLRIFLPHLHPFLQRQ-----QLDYRIFVIEQVD-------------------------NGPFN 94 (136)
T ss_dssp -S-EEEEEEEESS-HHHHHHHHHHHHHHHHHT-----T-EEEEEEEEE-S-------------------------SS---
T ss_pred cccceEEEEEeCCHHHHHHHHHHHHHHHHhhC-----cceEEEEEEeecc-------------------------CCCCc
Confidence 34589999999999998888888887766653 3478888886421 12356
Q ss_pred HHHHHHHHHHHc----CCCEEEEEeCCCCCChh
Q 023346 144 KGEAIRKGMLHS----RGELLLMLDADGATKVT 172 (283)
Q Consensus 144 k~~a~n~g~~~a----~~d~i~~~D~D~~~~~~ 172 (283)
+|.-+|.|+..| ..|.++|-|-|..+..+
T Consensus 95 Rg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 95 RGKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 778888888776 36899999999887544
No 89
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=96.32 E-value=0.024 Score=44.08 Aligned_cols=96 Identities=9% Similarity=0.153 Sum_probs=67.6
Q ss_pred EeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHH
Q 023346 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRK 150 (283)
Q Consensus 72 ip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~ 150 (283)
++. +....++.+++.+.+. .--+|+|+-.. +...+.+ .. .+++++.++ ...|...++-.
T Consensus 19 ~~i-~g~~li~~~l~~l~~~----------~~~~Ivvv~~~--~~~~~~~----~~---~~~~~v~~~~~~~G~~~sl~~ 78 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREA----------GVDDIVVVTGE--EEIYEYL----ER---YGIKVVVDPEPGQGPLASLLA 78 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHH----------TESEEEEEEST--HHHHHHH----TT---TTSEEEE-STSSCSHHHHHHH
T ss_pred eeE-CCccHHHHHHHHhhcc----------CCceEEEecCh--HHHHHHH----hc---cCceEEEeccccCChHHHHHH
Confidence 444 6667777777777651 12478877664 2222222 22 257777775 36899999999
Q ss_pred HHHHc-CCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCc
Q 023346 151 GMLHS-RGELLLMLDADGA-TKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 151 g~~~a-~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~ 187 (283)
|+++. ..+.++++.+|.. ++++.++++++.+++.+..
T Consensus 79 a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~ 117 (160)
T PF12804_consen 79 ALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPAD 117 (160)
T ss_dssp HHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTS
T ss_pred HHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCc
Confidence 99998 8999999999995 5999999999999876554
No 90
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=96.29 E-value=0.089 Score=43.18 Aligned_cols=99 Identities=11% Similarity=0.118 Sum_probs=65.0
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC--CcchHHHHHHHHHHcCCCcEEEEEc--CCC
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILL--GRN 141 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~~~~~~~--~~~ 141 (283)
|.|-||.|+|.+.....+ |..+...+.. -+++.-|||+|+. ++.|.+++++. ++.+.+. +.+
T Consensus 1 p~i~vVTPTy~R~~Q~~~-LtRLa~TL~l------Vp~l~WIVVEd~~~~t~~va~lL~~s-------gl~y~HL~~~~~ 66 (223)
T cd00218 1 PTIYVVTPTYARPVQKAE-LTRLAHTLRL------VPPLHWIVVEDSEEKTPLVAELLRRS-------GLMYTHLNAKTP 66 (223)
T ss_pred CeEEEECCCCccchhhHH-HHHHHHHHhc------CCceEEEEEeCCCCCCHHHHHHHHHc-------CCceEEeccCCC
Confidence 458899999998765544 4555544442 2389999999986 34466666554 2333322 111
Q ss_pred -------CCHHHHHHHHHHHcC-------CCEEEEEeCCCCCChhhHHHHH
Q 023346 142 -------HGKGEAIRKGMLHSR-------GELLLMLDADGATKVTDLEKLE 178 (283)
Q Consensus 142 -------~gk~~a~n~g~~~a~-------~d~i~~~D~D~~~~~~~l~~~~ 178 (283)
......+|.|+++.+ .-+|.|.|+|...+-+.+++|-
T Consensus 67 ~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR 117 (223)
T cd00218 67 SDPTWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR 117 (223)
T ss_pred CCcccCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence 113467899998764 2589999999999988888753
No 91
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.16 E-value=0.066 Score=51.13 Aligned_cols=105 Identities=15% Similarity=0.295 Sum_probs=67.6
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC---cc---hHHHHHHHHHHcCCCcEEEEEcC
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DG---TKRVAFDFVRKYTVDNVRIILLG 139 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~---d~---t~~~~~~~~~~~~~~~~~~~~~~ 139 (283)
-+..||||+.||.-. +|+-++..+ +.+.-||||.|++. |. ..+.++++..--. ..+-++++.
T Consensus 55 ~~~aivvp~k~e~~~---~~~gvl~~i--------p~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~-~~~~~vhq~ 122 (694)
T PRK14502 55 KKMAIVLPIKDEDLK---VFEGVLSGI--------PHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRITH-RQAIVVHQK 122 (694)
T ss_pred hCcEEEEEcCCCchh---HHhhHhhcC--------CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhhc-CceEEEEcC
Confidence 358999999999854 477777733 23567888888765 32 2244555543221 234444332
Q ss_pred ----------------------CCCCHHHHHHHHHHHcC---CCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346 140 ----------------------RNHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA 183 (283)
Q Consensus 140 ----------------------~~~gk~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~~~~~~~~ 183 (283)
-+.||+.++-.|+..|+ .+||.|+|+|..++ +...+-+..+..
T Consensus 123 dp~~a~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~p-g~v~ey~~~yaa 190 (694)
T PRK14502 123 NPELANAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIP-GAVWEYAKHFAT 190 (694)
T ss_pred CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCC-chHHHHHHHHHh
Confidence 13678888888886654 59999999999985 455555555544
No 92
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=96.12 E-value=0.031 Score=54.36 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCC--CEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecCcc
Q 023346 144 KGEAIRKGMLHSRG--ELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTF 201 (283)
Q Consensus 144 k~~a~n~g~~~a~~--d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (283)
+-..++...+.... ++|+++|+|+.+.|+.+.+|++.|+.+|..+.++|...+..+.|
T Consensus 426 ~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~I~~~~~~w 485 (862)
T KOG2571|consen 426 HRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGRILNKGGSW 485 (862)
T ss_pred HHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceeccccccCCCce
Confidence 33444555555544 67799999999999999999999999999988888655554444
No 93
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.14 Score=43.79 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=68.8
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC--CcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (283)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (283)
.|.|-||.|+|++..... -|..+.+.+.. -+++.-|||+||+ +..+..++++-.-. ..++.. +...
T Consensus 86 ~~~iivVTPTY~R~~q~~-~LtRlanTL~~------V~nLhWIVVEd~~~~~p~v~~~L~rtgl~----ythl~~-~t~~ 153 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAA-ELTRLANTLRL------VPNLHWIVVEDGEGTTPEVSGILRRTGLP----YTHLVH-KTPM 153 (330)
T ss_pred CccEEEEcccccchhHHH-HHHHHHHHHhh------cCCeeEEEEecCCCCCHHHHHHHHHcCCc----eEEEec-cCCC
Confidence 677999999999975443 35556555543 3389999999985 33455555543211 223333 2233
Q ss_pred C-H----HHHHHHHHHHcC---------CCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346 143 G-K----GEAIRKGMLHSR---------GELLLMLDADGATKVTDLEKLESQIHA 183 (283)
Q Consensus 143 g-k----~~a~n~g~~~a~---------~d~i~~~D~D~~~~~~~l~~~~~~~~~ 183 (283)
| + -..+|.|+++.+ .-+|.|.|+|...+-+.+++ ++....
T Consensus 154 ~~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v~~ 207 (330)
T KOG1476|consen 154 GYKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNVKK 207 (330)
T ss_pred CCccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhccce
Confidence 3 3 578899998765 35888999999999888877 344433
No 94
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.11 E-value=0.059 Score=42.78 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=60.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH 154 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~g~~~ 154 (283)
+....++..++.+.. . .--+|+||-+.... .. .+..... .+.++..+ ...|...++..|+++
T Consensus 24 ~g~~li~~~i~~l~~--------~--~~~~i~vv~~~~~~---~~-~~~~~~~---~~~~~~~~~~~~G~~~~i~~al~~ 86 (186)
T cd04182 24 DGKPLLRHALDAALA--------A--GLSRVIVVLGAEAD---AV-RAALAGL---PVVVVINPDWEEGMSSSLAAGLEA 86 (186)
T ss_pred CCeeHHHHHHHHHHh--------C--CCCcEEEECCCcHH---HH-HHHhcCC---CeEEEeCCChhhCHHHHHHHHHHh
Confidence 455666666666654 1 12367776443211 11 1111221 45555544 236889999999998
Q ss_pred cC--CCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346 155 SR--GELLLMLDADG-ATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 155 a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~ 186 (283)
+. .|+++++.+|. .++++.++++++.+.+.+.
T Consensus 87 ~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 87 LPADADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred ccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 86 79999999999 5689999999998875443
No 95
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=96.08 E-value=0.15 Score=40.95 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=62.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCCHHHHHHHHHHH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGMLH 154 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~-~~gk~~a~n~g~~~ 154 (283)
+....+..+++.+++ . .--+++||.... +...+.+.+...... ++.++.++. ..|...++-.|+++
T Consensus 24 ~g~~ll~~~i~~~~~---------~-~~~~i~vv~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~si~~gl~~ 90 (190)
T TIGR03202 24 GETTLGSASLKTALS---------S-RLSKVIVVIGEK-YAHLSWLDPYLLADE--RIMLVCCRDACEGQAHSLKCGLRK 90 (190)
T ss_pred CCccHHHHHHHHHHh---------C-CCCcEEEEeCCc-cchhhhhhHhhhcCC--CeEEEECCChhhhHHHHHHHHHHH
Confidence 556666666666554 1 134677776543 322222222211112 466665443 35888899999987
Q ss_pred c---CCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCC
Q 023346 155 S---RGELLLMLDADGAT-KVTDLEKLESQIHAVGR 186 (283)
Q Consensus 155 a---~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~ 186 (283)
+ ..|+++++++|.-. +++.++++++.+...+.
T Consensus 91 ~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 91 AEAMGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred hccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 6 47999999999877 89999999998876544
No 96
>PLN02458 transferase, transferring glycosyl groups
Probab=96.08 E-value=0.13 Score=44.36 Aligned_cols=103 Identities=9% Similarity=0.091 Sum_probs=64.3
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC-CcchHHHHHHHHHHcCCCcEEEEEc--CC
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILL--GR 140 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~~~~~~~--~~ 140 (283)
+.+.|-||.|+|.....-..-|..+...+. .-.+++.-|||+|+. +..|.+++++. ++.+.+. +.
T Consensus 110 ~~rlIivVTPTY~rR~~Q~a~LTRLahTL~-----lVp~pL~WIVVEd~~~t~~va~lLrrs-------Gl~y~HL~~k~ 177 (346)
T PLN02458 110 PRRLVIIVTPISTKDRYQGVLLRRLANTLR-----LVPPPLLWIVVEGQSDSEEVSEMLRKT-------GIMYRHLVFKE 177 (346)
T ss_pred CCceEEEECCCCCCcchhHHHHHHHHHHHh-----cCCCCceEEEEeCCCCCHHHHHHHHHc-------CCceEEeccCC
Confidence 345689999999842222333555555444 234478999999875 23344554443 2333322 22
Q ss_pred CC-----CHHHHHHHHHHHcC----CCEEEEEeCCCCCChhhHHHHH
Q 023346 141 NH-----GKGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKLE 178 (283)
Q Consensus 141 ~~-----gk~~a~n~g~~~a~----~d~i~~~D~D~~~~~~~l~~~~ 178 (283)
+. .....+|.|+++.+ .-+|.|.|+|...+-+.++++-
T Consensus 178 ~~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR 224 (346)
T PLN02458 178 NFTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIR 224 (346)
T ss_pred CCCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHh
Confidence 22 23466999998874 3689999999999888887753
No 97
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=96.03 E-value=0.1 Score=41.57 Aligned_cols=96 Identities=15% Similarity=0.196 Sum_probs=62.7
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCCHHHHHHHHHH-
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGML- 153 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~-~~gk~~a~n~g~~- 153 (283)
+....+...++.+.+ . ..-+|+||-+... .+..+.+.... ++.++..+. ..|...++..|++
T Consensus 23 ~g~pll~~~i~~l~~---------~-~~~~iivv~~~~~---~~~~~~~~~~~---~v~~v~~~~~~~g~~~si~~~l~~ 86 (188)
T TIGR03310 23 KGKTILEHVVDNALR---------L-FFDEVILVLGHEA---DELVALLANHS---NITLVHNPQYAEGQSSSIKLGLEL 86 (188)
T ss_pred CCeeHHHHHHHHHHH---------c-CCCcEEEEeCCcH---HHHHHHhccCC---CeEEEECcChhcCHHHHHHHHhcC
Confidence 456667777766665 1 1346766644322 22233332222 577776653 3588888888888
Q ss_pred HcCCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCc
Q 023346 154 HSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 154 ~a~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~ 187 (283)
....+.++++++|.. +.++.++++++.+.+.+..
T Consensus 87 ~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 121 (188)
T TIGR03310 87 PVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDE 121 (188)
T ss_pred CCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCc
Confidence 456799999999985 6899999999988765543
No 98
>PLN02436 cellulose synthase A
Probab=95.94 E-value=0.27 Score=49.09 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHc----CCCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346 144 KGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHA 183 (283)
Q Consensus 144 k~~a~n~g~~~a----~~d~i~~~D~D~~~-~~~~l~~~~~~~~~ 183 (283)
|++|+|..++.+ .++||+-+|+|... .|..+++.+=.|-+
T Consensus 550 KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD 594 (1094)
T PLN02436 550 KAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 594 (1094)
T ss_pred hhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcC
Confidence 999999999864 79999999999977 78888887766653
No 99
>PLN02400 cellulose synthase
Probab=95.91 E-value=0.18 Score=50.29 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH----cCCCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346 144 KGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHA 183 (283)
Q Consensus 144 k~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~ 183 (283)
|++|+|..++. +.++||+-+|+|... .|..+++.+=.|-+
T Consensus 541 KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD 585 (1085)
T PLN02400 541 KAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
T ss_pred hhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheec
Confidence 99999999985 479999999999999 78888877766543
No 100
>PLN02189 cellulose synthase
Probab=95.88 E-value=0.084 Score=52.37 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=44.2
Q ss_pred cEEEEEcCCCCC-----HHHHHHHHHHH----cCCCEEEEEeCCCCCC-hhhHHHHHHHHHH
Q 023346 132 NVRIILLGRNHG-----KGEAIRKGMLH----SRGELLLMLDADGATK-VTDLEKLESQIHA 183 (283)
Q Consensus 132 ~~~~~~~~~~~g-----k~~a~n~g~~~----a~~d~i~~~D~D~~~~-~~~l~~~~~~~~~ 183 (283)
++.++.++++.| |++|+|..++. +.++||+.+|+|..+. |..+++.+=.|-+
T Consensus 499 ~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflD 560 (1040)
T PLN02189 499 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 560 (1040)
T ss_pred eeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcC
Confidence 688888887655 99999999954 5799999999999995 6999988887764
No 101
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=95.61 E-value=0.12 Score=44.80 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=57.6
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (283)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk 144 (283)
.-+|.||||-+|+++.|...|..+..-+..| ...+.|+||....+ +..++
T Consensus 150 r~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQ-----rL~y~iyVieQ~g~-------------------------~~FNR 199 (372)
T KOG3916|consen 150 RHKVAIIIPFRNREEHLRYLLHHLHPFLQRQ-----RLDYRIYVIEQAGN-------------------------KPFNR 199 (372)
T ss_pred cceeEEEeecccHHHHHHHHHHHhhHHHHhh-----hhceeEEEEEecCC-------------------------CcccH
Confidence 4479999999999999999999988876654 33567777754211 23567
Q ss_pred HHHHHHHHHHc----CCCEEEEEeCCCCCChh
Q 023346 145 GEAIRKGMLHS----RGELLLMLDADGATKVT 172 (283)
Q Consensus 145 ~~a~n~g~~~a----~~d~i~~~D~D~~~~~~ 172 (283)
+.-+|.|+..| .-|-++|-|-|-.+..|
T Consensus 200 akL~NVGf~eAlkd~~wdCfIFHDVDllPenD 231 (372)
T KOG3916|consen 200 AKLLNVGFLEALKDYGWDCFIFHDVDLLPEND 231 (372)
T ss_pred HHhhhhHHHHHHHhcCCCEEEEecccccccCC
Confidence 77888888766 35789999999887543
No 102
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=95.60 E-value=0.076 Score=45.53 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=72.9
Q ss_pred EEEEE-eecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-------
Q 023346 68 ISLII-PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG------- 139 (283)
Q Consensus 68 vsvii-p~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~------- 139 (283)
++|++ |.|..+.... .+...++.... ..--.+++-+.++++.+.++++.+.+.. .++++.-+
T Consensus 3 ~~vCv~pl~~~~~~~~-~l~e~ie~~~~------~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g---~v~~~~w~~~~~~~~ 72 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWL-QLIEWIEYHRL------LGVDHFYFYDNSSSPSVRKVLKEYERSG---YVEVIPWPLRPKFPD 72 (285)
T ss_pred EEEEccchhcccccHH-HHHHHHHHHHH------hCCCEEEEEEccCCHHHHHhHHHHhhcC---eEEEEEcccccccCC
Confidence 67777 6666443322 23333332221 2345788888889999999999887662 57766654
Q ss_pred ------------CCCCHHHHHHHHHHHcC--CCEEEEEeCCCCCChhh----HHHHHHHHHHcCC
Q 023346 140 ------------RNHGKGEAIRKGMLHSR--GELLLMLDADGATKVTD----LEKLESQIHAVGR 186 (283)
Q Consensus 140 ------------~~~gk~~a~n~g~~~a~--~d~i~~~D~D~~~~~~~----l~~~~~~~~~~~~ 186 (283)
...|...|.|.++...+ .+|++|+|-|..+-|.. .+.+...+++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~ 137 (285)
T PF01697_consen 73 FPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPN 137 (285)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhccc
Confidence 01345788888887764 68999999999996665 6777777776655
No 103
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=95.55 E-value=0.38 Score=41.64 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCceEEEEEeecCC--CCChHHHHHHHHHHHHHhhhcCCCCceEEEE-EeCCCCcchHHHHHHHHHHcC----CCcEEEE
Q 023346 64 AEKYISLIIPAFNE--EHRLPGALDETLNYLQQRAAKDKSFTYEVLI-IDDGSSDGTKRVAFDFVRKYT----VDNVRII 136 (283)
Q Consensus 64 ~~p~vsviip~~ne--~~~l~~~l~s~~~~~~~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~----~~~~~~~ 136 (283)
..++++|=||+-.+ +.+|.++|.|++..+.... ....-|+| +.|...+....+.+++...++ ...+.|+
T Consensus 50 ~~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~E----r~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI 125 (297)
T PF04666_consen 50 TGKKLCIGIPTVKREKESYLLDTLASLLDGLSPEE----RKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVI 125 (297)
T ss_pred CCCeEEEEecccccCCCchHHHHHHHHHHhCCHHH----hcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEE
Confidence 34459999998554 6789999999999766532 22333333 333323333444444443322 1245555
Q ss_pred EcCCC-----------CC---------------HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 137 LLGRN-----------HG---------------KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 137 ~~~~~-----------~g---------------k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
..+.. .| .+..++.+ +.+|+|++.+.+|....|+|+.++.+.+.....
T Consensus 126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~--~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~ 199 (297)
T PF04666_consen 126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC--QNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWES 199 (297)
T ss_pred ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH--HhcCCeEEEecCCeEechhHHHHHHHHHHHhcC
Confidence 44321 11 22233332 236899999999999999999999999987654
No 104
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=95.34 E-value=0.19 Score=40.99 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=61.1
Q ss_pred eecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHH
Q 023346 73 PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGM 152 (283)
Q Consensus 73 p~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~ 152 (283)
|..+ .+.+...++++.+ ..--+|+|+-+...+...+.+.+... +. ..+.++..+...|.+.++..++
T Consensus 25 ~v~g-~pli~~~l~~l~~----------~g~~~i~vv~~~~~~~i~~~~~~~~~-~~-~~i~~~~~~~~~g~~~al~~~~ 91 (217)
T cd04181 25 PIAG-KPILEYIIERLAR----------AGIDEIILVVGYLGEQIEEYFGDGSK-FG-VNIEYVVQEEPLGTAGAVRNAE 91 (217)
T ss_pred EECC-eeHHHHHHHHHHH----------CCCCEEEEEeccCHHHHHHHHcChhh-cC-ceEEEEeCCCCCccHHHHHHhh
Confidence 3344 4677777777665 11346777665433333333322110 11 2466666665688899999999
Q ss_pred HHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 153 LHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 153 ~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
+....+.++++++|.....+ +.++++.+.+..
T Consensus 92 ~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~ 123 (217)
T cd04181 92 DFLGDDDFLVVNGDVLTDLD-LSELLRFHREKG 123 (217)
T ss_pred hhcCCCCEEEEECCeecCcC-HHHHHHHHHhcC
Confidence 88877899999999988766 555656555443
No 105
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=95.15 E-value=0.35 Score=38.91 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=42.3
Q ss_pred cEEEEEcCC--CCCHHHHHHHHHHHcCCCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346 132 NVRIILLGR--NHGKGEAIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 132 ~~~~~~~~~--~~gk~~a~n~g~~~a~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~ 186 (283)
.++++.... ..|...++..|++....++++++++|. .++++.++++++.+.+.+.
T Consensus 62 ~~~~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 119 (193)
T PRK00317 62 GLPVIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDA 119 (193)
T ss_pred CCcEEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCC
Confidence 345555432 367778889999988889999999999 5599999999998765433
No 106
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=94.84 E-value=0.57 Score=37.77 Aligned_cols=95 Identities=9% Similarity=0.183 Sum_probs=69.4
Q ss_pred ecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCCHHHHHHHHH
Q 023346 74 AFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGM 152 (283)
Q Consensus 74 ~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~-~~gk~~a~n~g~ 152 (283)
-++....+..+++..++ ..--++|||--.- ..+..+..... .+++++.++. ..|.+.++..|+
T Consensus 27 p~~g~plv~~~~~~a~~----------a~~~~vivV~g~~---~~~~~~a~~~~---~~~~~v~npd~~~Gls~Sl~ag~ 90 (199)
T COG2068 27 PLDGKPLVRASAETALS----------AGLDRVIVVTGHR---VAEAVEALLAQ---LGVTVVVNPDYAQGLSTSLKAGL 90 (199)
T ss_pred ccCCCcHHHHHHHHHHh----------cCCCeEEEEeCcc---hhhHHHhhhcc---CCeEEEeCcchhhhHhHHHHHHH
Confidence 34555666777776665 2234788886654 33333333322 2689999875 589999999999
Q ss_pred HHcCCC--EEEEEeCCCC-CChhhHHHHHHHHHHc
Q 023346 153 LHSRGE--LLLMLDADGA-TKVTDLEKLESQIHAV 184 (283)
Q Consensus 153 ~~a~~d--~i~~~D~D~~-~~~~~l~~~~~~~~~~ 184 (283)
+++.++ .++++-+|.- +.++.+.++++.+...
T Consensus 91 ~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 91 RAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred HhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 998765 9999999988 7999999999999776
No 107
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=94.76 E-value=0.033 Score=46.96 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=66.2
Q ss_pred EEEEEee-cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 023346 68 ISLIIPA-FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (283)
Q Consensus 68 vsviip~-~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~ 146 (283)
.||+|.+ |++.+.|.+.|+++.+ ...--||+||=++....... ....... ..++++..+.| .-.
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~---------~~~l~~IvVvWn~~~~~P~~--~~~~~~~--vpV~~~~~~~n--sLn 65 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLAS---------SPSLRKIVVVWNNPNPPPPS--SKWPSTG--VPVRVVRSSRN--SLN 65 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTT---------STTEEEEEEEEE-TS--THH--HHHT-----S-EEEEEESSH--HGG
T ss_pred CEEEEEecccchHHHHHHHHHHHc---------CCCCCeEEEEeCCCCCCCcc--cccCCCC--ceEEEEecCCc--cHH
Confidence 4889999 8888877777777743 33356788876653222211 1221111 36888876532 222
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346 147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (283)
Q Consensus 147 a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 192 (283)
++-.-....+++-|+.+|+|..++++.|+...+.-++.|+..+++.
T Consensus 66 nRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 66 NRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp GGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred hcCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence 3333445678999999999999999999999999998888755443
No 108
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=94.54 E-value=0.036 Score=47.90 Aligned_cols=88 Identities=16% Similarity=0.259 Sum_probs=52.5
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-----
Q 023346 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG----- 139 (283)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~----- 139 (283)
...+.||||+-.+. .+|++.... -.++++|+|-|+..-.+..+-+-+ ...+...+
T Consensus 10 ~~evdIVi~TI~~~----~fL~~~r~~---------l~~~h~iiV~d~D~~~~~~~~~G~-------d~~vy~r~d~~~~ 69 (346)
T PLN03180 10 KDELDIVIPTIRNL----DFLEMWRPF---------FQPYHLIIVQDGDPSKEIKVPEGF-------DYELYNRNDINRI 69 (346)
T ss_pred CCcceEEEeccCch----hHHHHHHHh---------cCcccEEEEecCCcccceeccCCC-------ceeecCHHHHHhh
Confidence 34589999996553 455555542 226778888774332221111100 11111110
Q ss_pred -------CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChh
Q 023346 140 -------RNHGKGEAIRKGMLHSRGELLLMLDADGATKVT 172 (283)
Q Consensus 140 -------~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~ 172 (283)
-+....+.+|.|+-.++.+|++++|+|+.+..+
T Consensus 70 Lg~~~~~Ip~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d 109 (346)
T PLN03180 70 LGPKASCISFKDSACRCFGYLVSKKKYIFTIDDDCFVAKD 109 (346)
T ss_pred hcccccccccCcccchhhhheeecceEEEEECCCCCCCCC
Confidence 012344667889888999999999999999877
No 109
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=94.51 E-value=0.26 Score=39.08 Aligned_cols=84 Identities=18% Similarity=0.136 Sum_probs=58.9
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH 154 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~g~~~ 154 (283)
+....+..+++.+.+. --+|+||-+..... .. .. +++++..+ ...|...++..|+++
T Consensus 24 ~g~~ll~~~i~~l~~~-----------~~~iivv~~~~~~~----~~----~~---~~~~v~~~~~~~G~~~si~~~l~~ 81 (181)
T cd02503 24 GGKPLLEHVLERLKPL-----------VDEVVISANRDQER----YA----LL---GVPVIPDEPPGKGPLAGILAALRA 81 (181)
T ss_pred CCEEHHHHHHHHHHhh-----------cCEEEEECCCChHH----Hh----hc---CCcEeeCCCCCCCCHHHHHHHHHh
Confidence 4566666666666541 23677775432211 11 11 46667654 357888999999999
Q ss_pred cCCCEEEEEeCCCC-CChhhHHHHHHHH
Q 023346 155 SRGELLLMLDADGA-TKVTDLEKLESQI 181 (283)
Q Consensus 155 a~~d~i~~~D~D~~-~~~~~l~~~~~~~ 181 (283)
...+.++++.+|.. +.++.++++++.+
T Consensus 82 ~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 82 APADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred cCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 88999999999996 5999999999887
No 110
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=94.50 E-value=0.75 Score=38.15 Aligned_cols=97 Identities=10% Similarity=0.117 Sum_probs=57.9
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
+....+..+++.+.+ ...--+|+|+-+.... . +.+.++.... +++++.++...+.+ ....+++..
T Consensus 22 ~Gkpli~~~i~~l~~---------~~~~~~ivVv~~~~~~-~-~~i~~~~~~~---~v~~v~~~~~~~l~-~~~~~~~~~ 86 (233)
T cd02518 22 GGKPLLEHLLDRLKR---------SKLIDEIVIATSTNEE-D-DPLEALAKKL---GVKVFRGSEEDVLG-RYYQAAEEY 86 (233)
T ss_pred CCccHHHHHHHHHHh---------CCCCCeEEEECCCCcc-c-HHHHHHHHHc---CCeEEECCchhHHH-HHHHHHHHc
Confidence 455666777766654 1112367776554431 1 1222222222 46777776433222 233345555
Q ss_pred CCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCCc
Q 023346 156 RGELLLMLDADGAT-KVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 156 ~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~~ 187 (283)
..++++++++|.-+ +++.++++++.+...+..
T Consensus 87 ~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~ 119 (233)
T cd02518 87 NADVVVRITGDCPLIDPEIIDAVIRLFLKSGAD 119 (233)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 68999999999886 899999999988765443
No 111
>PLN02917 CMP-KDO synthetase
Probab=94.42 E-value=1.1 Score=38.82 Aligned_cols=53 Identities=8% Similarity=0.200 Sum_probs=37.9
Q ss_pred cEEEEEc--CCCCCHHHHHHHHHHHcC--CCEEEEEeCCCCC-ChhhHHHHHHHHHHcC
Q 023346 132 NVRIILL--GRNHGKGEAIRKGMLHSR--GELLLMLDADGAT-KVTDLEKLESQIHAVG 185 (283)
Q Consensus 132 ~~~~~~~--~~~~gk~~a~n~g~~~a~--~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~ 185 (283)
++.++.+ ....|.+.+ ..|++... .|+++++++|..+ +++.++++++.+.+++
T Consensus 108 ~v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~ 165 (293)
T PLN02917 108 GADVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 165 (293)
T ss_pred CCEEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcC
Confidence 3555543 234565555 46776653 6899999999885 9999999999886654
No 112
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=94.24 E-value=0.52 Score=38.51 Aligned_cols=93 Identities=16% Similarity=0.112 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc-CCCcEEEEEcCCCCCHHHHHHHHHHHcC
Q 023346 78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY-TVDNVRIILLGRNHGKGEAIRKGMLHSR 156 (283)
Q Consensus 78 ~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~~~~~~~~~~~gk~~a~n~g~~~a~ 156 (283)
.+.|...++.+.+ ..--+|+|+-+...+...+.+. ... ....+.+.......|.+.++-.|+++..
T Consensus 29 ~pli~~~l~~l~~----------~g~~~v~vv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~ 95 (223)
T cd06915 29 RPFLEYLLEYLAR----------QGISRIVLSVGYLAEQIEEYFG---DGYRGGIRIYYVIEPEPLGTGGAIKNALPKLP 95 (223)
T ss_pred cchHHHHHHHHHH----------CCCCEEEEEcccCHHHHHHHHc---CccccCceEEEEECCCCCcchHHHHHHHhhcC
Confidence 4667777766665 1123677765543333333332 111 1113444454556888899999998887
Q ss_pred CCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 157 GELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 157 ~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
.+.++++++|..+++ .+.++++.+.+.
T Consensus 96 ~~~~lv~~~D~~~~~-~~~~~l~~~~~~ 122 (223)
T cd06915 96 EDQFLVLNGDTYFDV-DLLALLAALRAS 122 (223)
T ss_pred CCCEEEEECCcccCC-CHHHHHHHHHhC
Confidence 788999999997754 477787777553
No 113
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=94.13 E-value=0.62 Score=40.69 Aligned_cols=114 Identities=11% Similarity=0.152 Sum_probs=80.9
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCC--------CcEE
Q 023346 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--------DNVR 134 (283)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--------~~~~ 134 (283)
..+|.+.||+-++|.+..++++++++++.- -....+-|||.-||....+...++.+...... ..+.
T Consensus 64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yr------PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~ 137 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRADALRRHVKKLLEYR------PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEIS 137 (411)
T ss_pred CCCCceeEEEEecCcHHHHHHHHHHHHHhC------cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccc
Confidence 345668899999999999999999999832 12346778888899888888888777554320 1122
Q ss_pred EEEcCCC-CC-------HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346 135 IILLGRN-HG-------KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (283)
Q Consensus 135 ~~~~~~~-~g-------k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~ 182 (283)
|...... .+ ...|+|..+...+.+.++++.+|.-+.|++.+...+...
T Consensus 138 v~~~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~ 193 (411)
T KOG1413|consen 138 VPPRHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTII 193 (411)
T ss_pred cCCcccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHH
Confidence 2222211 11 345777777777899999999999999999887766543
No 114
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=93.63 E-value=0.55 Score=43.09 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=61.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|..+ .+.+..+++++.+ ....+++|+.....+. +++...++ ++.++..++..|.+.++..
T Consensus 22 l~~i~g-kpli~~~l~~l~~----------~g~~~iiiv~~~~~~~----i~~~~~~~---~i~~~~~~~~~G~~~ai~~ 83 (451)
T TIGR01173 22 LHPLAG-KPMLEHVIDAARA----------LGPQKIHVVYGHGAEQ----VRKALANR---DVNWVLQAEQLGTGHAVLQ 83 (451)
T ss_pred hceeCC-ccHHHHHHHHHHh----------CCCCeEEEEECCCHHH----HHHHhcCC---CcEEEEcCCCCchHHHHHH
Confidence 344444 4666666666654 1123666664432222 23332222 4666666656788888888
Q ss_pred HHHHcC-CCEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346 151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (283)
Q Consensus 151 g~~~a~-~d~i~~~D~D~-~~~~~~l~~~~~~~~~~ 184 (283)
++.... .+.++++++|. .+.++.++++++.+.+.
T Consensus 84 a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~ 119 (451)
T TIGR01173 84 ALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN 119 (451)
T ss_pred HHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC
Confidence 888864 47899999998 57899999999887654
No 115
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=93.38 E-value=0.66 Score=38.47 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=60.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEE--cCCCCCHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL--LGRNHGKGEAI 148 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~--~~~~~gk~~a~ 148 (283)
++|..+. +.|...++++.+ . .--+|+|+-....+...+.+.++... ..+.++. .....|.+.++
T Consensus 25 llpv~g~-pli~~~l~~l~~--------~--g~~~v~iv~~~~~~~~~~~l~~~~~~---~~~~i~~~~~~~~~G~~~al 90 (233)
T cd06425 25 LVEFCNK-PMIEHQIEALAK--------A--GVKEIILAVNYRPEDMVPFLKEYEKK---LGIKITFSIETEPLGTAGPL 90 (233)
T ss_pred cCeECCc-chHHHHHHHHHH--------C--CCcEEEEEeeeCHHHHHHHHhccccc---CCeEEEeccCCCCCccHHHH
Confidence 3455454 677777777665 1 12356666554444444444433111 1344443 34457888888
Q ss_pred HHHHHHcCC--CEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346 149 RKGMLHSRG--ELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 149 n~g~~~a~~--d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 187 (283)
..|....+. +-++++.+|...+.+ +.++++.+.+.+..
T Consensus 91 ~~a~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~ 130 (233)
T cd06425 91 ALARDLLGDDDEPFFVLNSDVICDFP-LAELLDFHKKHGAE 130 (233)
T ss_pred HHHHHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHHHcCCC
Confidence 888887653 446777999887665 58888877665443
No 116
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=93.37 E-value=0.21 Score=41.79 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=67.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCC--CcEEEEEcCCCCCHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--DNVRIILLGRNHGKGEAI 148 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~~~~~~~~~~~gk~~a~ 148 (283)
++|..|..+.|...|+.+.+ ..--++|+|-.+.. .+.+.++...... ..++++..+...|.+.|+
T Consensus 24 ll~i~g~~pli~~~l~~l~~----------~g~~~ii~V~~~~~---~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al 90 (248)
T PF00483_consen 24 LLPIGGKYPLIDYVLENLAN----------AGIKEIIVVVNGYK---EEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGAL 90 (248)
T ss_dssp GSEETTEEEHHHHHHHHHHH----------TTCSEEEEEEETTT---HHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHH
T ss_pred cceecCCCcchhhhhhhhcc----------cCCceEEEEEeecc---cccccccccccccccccceeeecccccchhHHH
Confidence 34555665666666666665 33456444433221 2223333333221 247888888788999999
Q ss_pred HHHHHHcCCCE----EEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346 149 RKGMLHSRGEL----LLMLDADGATKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 149 n~g~~~a~~d~----i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 187 (283)
-.+......+- ++++.+|...+. .+..+++.+.+.+..
T Consensus 91 ~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~ 132 (248)
T PF00483_consen 91 LQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNAD 132 (248)
T ss_dssp HHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhccccc
Confidence 99999988765 999999998888 777888877776653
No 117
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=93.29 E-value=0.89 Score=37.31 Aligned_cols=97 Identities=14% Similarity=0.016 Sum_probs=57.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIR 149 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n 149 (283)
++|..+. ..|...|+++.+ ..--+|+|+-....+...+.+.+ +.....+.+.... +..|.+.++.
T Consensus 24 llpi~g~-~li~~~l~~l~~----------~gi~~i~iv~~~~~~~i~~~~~~---~~~~~~i~~~~~~~~~~g~~~~l~ 89 (221)
T cd06422 24 LVPVAGK-PLIDHALDRLAA----------AGIRRIVVNTHHLADQIEAHLGD---SRFGLRITISDEPDELLETGGGIK 89 (221)
T ss_pred eeeECCE-EHHHHHHHHHHH----------CCCCEEEEEccCCHHHHHHHHhc---ccCCceEEEecCCCcccccHHHHH
Confidence 4455454 777777777665 22346666654433333333322 1111134444433 3568888999
Q ss_pred HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (283)
Q Consensus 150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~ 182 (283)
.++.....+.++++.+|.....+..+ +++...
T Consensus 90 ~~~~~~~~~~~lv~~~D~i~~~~~~~-~~~~~~ 121 (221)
T cd06422 90 KALPLLGDEPFLVVNGDILWDGDLAP-LLLLHA 121 (221)
T ss_pred HHHHhcCCCCEEEEeCCeeeCCCHHH-HHHHHH
Confidence 99988766889999999988876554 555443
No 118
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.27 E-value=0.32 Score=40.15 Aligned_cols=90 Identities=14% Similarity=0.245 Sum_probs=66.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCCHHHHHHHHHH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAIRKGML 153 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~--~~gk~~a~n~g~~ 153 (283)
...+.|.++|+++.+ ..--|++||-+|-- .+.++.+..+++ ...+++.++. ..+-+.++-.|..
T Consensus 29 ~gr~ii~~~i~~L~~----------~gi~e~vvV~~g~~---~~lve~~l~~~~-~~~~iv~N~~y~ktN~~~Sl~~akd 94 (239)
T COG1213 29 GGREIIYRTIENLAK----------AGITEFVVVTNGYR---ADLVEEFLKKYP-FNAKIVINSDYEKTNTGYSLLLAKD 94 (239)
T ss_pred CCeEeHHHHHHHHHH----------cCCceEEEEeccch---HHHHHHHHhcCC-cceEEEeCCCcccCCceeEEeeehh
Confidence 355678888888887 44668999986643 344555555555 3678888763 2344677788888
Q ss_pred HcCCCEEEEEeCCCCCChhhHHHHHHH
Q 023346 154 HSRGELLLMLDADGATKVTDLEKLESQ 180 (283)
Q Consensus 154 ~a~~d~i~~~D~D~~~~~~~l~~~~~~ 180 (283)
+.+++ ++++++|...+|..+++++++
T Consensus 95 ~~~~~-fii~~sD~vye~~~~e~l~~a 120 (239)
T COG1213 95 YMDGR-FILVMSDHVYEPSILERLLEA 120 (239)
T ss_pred hhcCc-EEEEeCCEeecHHHHHHHHhC
Confidence 88888 777999999999999999885
No 119
>PLN02248 cellulose synthase-like protein
Probab=93.13 E-value=0.15 Score=50.90 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH----cCCCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346 144 KGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHA 183 (283)
Q Consensus 144 k~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~ 183 (283)
|++|+|..++. +.++||+.+|+|..+ ++..+++.+=.|-+
T Consensus 603 KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 603 KAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 99999988874 579999999999998 55688888877765
No 120
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=93.00 E-value=0.69 Score=37.54 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=44.4
Q ss_pred cEEEEEcCC-CCCHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346 132 NVRIILLGR-NHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAV 184 (283)
Q Consensus 132 ~~~~~~~~~-~~gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~ 184 (283)
+++++..+. ..|...++-.|+++...++++++++|..+ +++.++++++.++..
T Consensus 67 ~~~~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 121 (200)
T PRK02726 67 GCHWLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLENV 121 (200)
T ss_pred CCeEecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 467776553 37899999999999988999999999876 899999999987653
No 121
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.94 E-value=0.94 Score=41.61 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=62.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|..+ ...|...|+++.+ ....+++|+-....+. ++++..+.. +++++..+...|.+.++..
T Consensus 23 ll~v~g-kpli~~~l~~l~~----------~g~~~iivvv~~~~~~----i~~~~~~~~--~i~~v~~~~~~G~~~sv~~ 85 (450)
T PRK14360 23 LHPLGG-KSLVERVLDSCEE----------LKPDRRLVIVGHQAEE----VEQSLAHLP--GLEFVEQQPQLGTGHAVQQ 85 (450)
T ss_pred cCEECC-hhHHHHHHHHHHh----------CCCCeEEEEECCCHHH----HHHHhcccC--CeEEEEeCCcCCcHHHHHH
Confidence 344434 4666667776665 2223566555432222 233322222 5777776656777788877
Q ss_pred HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHHcCCc
Q 023346 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~~ 187 (283)
+++... .+.++++++|. .+.+..++++++.+.+.+..
T Consensus 86 ~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~ 125 (450)
T PRK14360 86 LLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNAD 125 (450)
T ss_pred HHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCc
Confidence 777653 45678899998 56899999999988765443
No 122
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=92.87 E-value=2.1 Score=36.35 Aligned_cols=102 Identities=13% Similarity=0.187 Sum_probs=66.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH---cCCCcEEEEEcCCCCCHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILLGRNHGKGEA 147 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~~~~~gk~~a 147 (283)
++|+|+. +.|.-+|+.+.. ..--+|+||-. ++.....+++... +. .++++..+++..|.+.|
T Consensus 25 LlpV~~K-Pmi~y~l~~L~~----------aGI~dI~II~~---~~~~~~~~~llGdgs~~g-v~itY~~Q~~p~GlA~A 89 (286)
T COG1209 25 LLPVYDK-PMIYYPLETLML----------AGIRDILIVVG---PEDKPTFKELLGDGSDFG-VDITYAVQPEPDGLAHA 89 (286)
T ss_pred cceecCc-chhHhHHHHHHH----------cCCceEEEEec---CCchhhhhhhhcCccccC-cceEEEecCCCCcHHHH
Confidence 5788874 455666777665 33457777743 3333333333222 22 47999999999999999
Q ss_pred HHHHHHHcC-CCEEEEEeCCCCCChhhHHHHHHHHHHcCCccc
Q 023346 148 IRKGMLHSR-GELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189 (283)
Q Consensus 148 ~n~g~~~a~-~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~ 189 (283)
.-.|-.... .++++++ +|..+.. -+++.++.+.+....+.
T Consensus 90 v~~a~~fv~~~~f~l~L-GDNi~~~-~l~~~~~~~~~~~~ga~ 130 (286)
T COG1209 90 VLIAEDFVGDDDFVLYL-GDNIFQD-GLSELLEHFAEEGSGAT 130 (286)
T ss_pred HHHHHhhcCCCceEEEe-cCceecc-ChHHHHHHHhccCCCcE
Confidence 999999988 5555555 5555555 88888888876444433
No 123
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.86 E-value=1.2 Score=41.04 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=63.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|..+. +.+...|+++.+ ..--+++++-....+ ++.+.+ .+.. .+.++..+...|.+.++..
T Consensus 25 l~pi~g~-pli~~~l~~l~~----------~gi~~iiiv~~~~~~---~i~~~~-~~~~--~i~~~~~~~~~Gt~~al~~ 87 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAARE----------AGAGRIVLVVGHQAE---KVREHF-AGDG--DVSFALQEEQLGTGHAVAC 87 (459)
T ss_pred eceeCCc-cHHHHHHHHHHh----------cCCCeEEEEECCCHH---HHHHHh-ccCC--ceEEEecCCCCCHHHHHHH
Confidence 4555554 666666666654 223466666543222 222222 2222 5667666667888899988
Q ss_pred HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHHcC
Q 023346 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~ 185 (283)
+++... .|.++++++|. .+.+..++++++.+....
T Consensus 88 a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~ 125 (459)
T PRK14355 88 AAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATG 125 (459)
T ss_pred HHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcC
Confidence 888764 47899999998 678999999999886643
No 124
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=92.77 E-value=1.9 Score=35.67 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=58.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|..+. ..+...++++.+ . .--+|+|+-....+...+.+.+.. .++ ..+.++..+...|.+.++..
T Consensus 25 l~~i~g~-~li~~~l~~l~~--------~--~~~~i~vv~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~g~~~sl~~ 91 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLRE--------A--GIEDIGIVVGPTGEEIKEALGDGS-RFG-VRITYILQEEPLGLAHAVLA 91 (236)
T ss_pred eeEECCc-chHHHHHHHHHH--------C--CCCEEEEEcCCCHHHHHHHhcchh-hcC-CeEEEEECCCCCChHHHHHH
Confidence 4454444 777777777665 1 233677766543333333333211 111 24566666556788899988
Q ss_pred HHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 151 GMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 151 g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
|......+-++++.+|.....+ +.++++.+...
T Consensus 92 a~~~i~~~~~li~~~D~~~~~~-~~~~~~~~~~~ 124 (236)
T cd04189 92 ARDFLGDEPFVVYLGDNLIQEG-ISPLVRDFLEE 124 (236)
T ss_pred HHHhcCCCCEEEEECCeecCcC-HHHHHHHHHhc
Confidence 8887753334558899988766 44566655443
No 125
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=92.75 E-value=2.2 Score=37.80 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=77.1
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchH--H----------------HHHHHHHH--
Q 023346 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK--R----------------VAFDFVRK-- 127 (283)
Q Consensus 68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~--~----------------~~~~~~~~-- 127 (283)
|=|.|+.|...+ ...+|.+++++.. ...++-|=|++....++.. . ....+...
T Consensus 2 IFvsiasyRD~~-c~~Tl~~~~~~A~------~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 74 (343)
T PF11397_consen 2 IFVSIASYRDPE-CAPTLKDLFARAT------NPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSA 74 (343)
T ss_pred EEEEEeeecCch-HHHHHHHHHHhcC------CCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccc
Confidence 567889998864 7788888887322 3456777777654332222 0 01111111
Q ss_pred ----------cCCCcEEEEEcC--CCCCHHHHHHHHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 128 ----------YTVDNVRIILLG--RNHGKGEAIRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 128 ----------~~~~~~~~~~~~--~~~gk~~a~n~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
....+|++++.+ ...|...|++.+.+.-+| +|++.+|+.+++.++|=+.+++.+...+.
T Consensus 75 ~~~~~~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~ 146 (343)
T PF11397_consen 75 CAEWPDGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRN 146 (343)
T ss_pred ccccccccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCC
Confidence 111367777765 358999999999988775 79999999999999999999999987643
No 126
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=92.63 E-value=3 Score=34.33 Aligned_cols=95 Identities=16% Similarity=0.226 Sum_probs=57.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
+..+.+..+++.+.. ...--+|+|+-+... ..++.+.+..... ++.++... .+...++-.|++..
T Consensus 29 ~g~pli~~~l~~l~~---------~~~~~~ivvv~~~~~--~~~~~~~~~~~~~--~~~~~~~~--~~~~~sv~~~l~~~ 93 (227)
T PRK00155 29 GGKPILEHTLEAFLA---------HPRIDEIIVVVPPDD--RPDFAELLLAKDP--KVTVVAGG--AERQDSVLNGLQAL 93 (227)
T ss_pred CCEEHHHHHHHHHHc---------CCCCCEEEEEeChHH--HHHHHHHhhccCC--ceEEeCCc--chHHHHHHHHHHhC
Confidence 445555566665553 111336777755222 1222222221111 34444332 35788888888876
Q ss_pred -CCCEEEEEeCCCC-CChhhHHHHHHHHHHcC
Q 023346 156 -RGELLLMLDADGA-TKVTDLEKLESQIHAVG 185 (283)
Q Consensus 156 -~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~ 185 (283)
..++++++|+|.. ++++.++++++.+..++
T Consensus 94 ~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (227)
T PRK00155 94 PDDDWVLVHDAARPFLTPDDIDRLIEAAEETG 125 (227)
T ss_pred CCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 5789999999977 48999999999887653
No 127
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=92.62 E-value=1.6 Score=37.83 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=63.0
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHH---HcCCCcEEEEEcCCCCCHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR---KYTVDNVRIILLGRNHGKGEA 147 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~---~~~~~~~~~~~~~~~~gk~~a 147 (283)
++|+++. +.|.-.|+++.. ..--+|+||-.... .+.++++.. .+. .++.++..++..|.+.|
T Consensus 28 Llpv~gk-PmI~~~l~~l~~----------aGi~~I~ii~~~~~---~~~~~~~l~~g~~~g-~~i~y~~q~~~~Gta~A 92 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLML----------AGIRDILIISTPQD---TPRFQQLLGDGSQWG-LNLQYKVQPSPDGLAQA 92 (292)
T ss_pred EeEECCE-EHHHHHHHHHHH----------CCCCEEEEEecCCc---hHHHHHHHcCccccC-ceeEEEECCCCCCHHHH
Confidence 6788887 777777777765 22457776654221 122233322 121 35777877778899999
Q ss_pred HHHHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 148 IRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 148 ~n~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
+-.|...... +++++ -+|+.+....+.++++.+.+..
T Consensus 93 l~~a~~~i~~~~~~lv-~gD~i~~~~~l~~ll~~~~~~~ 130 (292)
T PRK15480 93 FIIGEEFIGGDDCALV-LGDNIFYGHDLPKLMEAAVNKE 130 (292)
T ss_pred HHHHHHHhCCCCEEEE-ECCeeeeccCHHHHHHHHHhCC
Confidence 9998888754 55554 5777765566888888765543
No 128
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=92.53 E-value=0.93 Score=37.41 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=57.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCCHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAI 148 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~--~~gk~~a~ 148 (283)
++|.-+ ...|...|+++.+ ..--+|+||-.... +.+.++..... ++.++.++. ..|.+.++
T Consensus 23 l~~~~g-~~li~~~l~~l~~----------~gi~~i~vv~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~g~~~s~ 85 (229)
T cd02523 23 LLEING-KPLLERQIETLKE----------AGIDDIVIVTGYKK----EQIEELLKKYP--NIKFVYNPDYAETNNIYSL 85 (229)
T ss_pred eeeECC-EEHHHHHHHHHHH----------CCCceEEEEeccCH----HHHHHHHhccC--CeEEEeCcchhhhCcHHHH
Confidence 344434 4667777777665 12346777655322 22333333222 577777653 47888899
Q ss_pred HHHHHHcCCCEEEEEeCCCCCChhhHHHHH
Q 023346 149 RKGMLHSRGELLLMLDADGATKVTDLEKLE 178 (283)
Q Consensus 149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~ 178 (283)
..|.... .+.++++.+|....++.++.+.
T Consensus 86 ~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 86 YLARDFL-DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred HHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence 9998887 6788999999999887666554
No 129
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=92.52 E-value=1.9 Score=37.22 Aligned_cols=99 Identities=16% Similarity=0.114 Sum_probs=60.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCCHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHGKGEAI 148 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~~~~~~~gk~~a~ 148 (283)
++|+++. +.|.-.|+.+.. ..--+|+||-.... .+.++++..... ..++.++..++..|.+.|+
T Consensus 24 Llpv~gk-PmI~~~L~~l~~----------aGi~~I~iv~~~~~---~~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al 89 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLML----------AGIRDILIISTPQD---TPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAF 89 (286)
T ss_pred eeEECCE-EhHHHHHHHHHH----------CCCCEEEEEecCCc---HHHHHHHhccccccCceEEEEEccCCCCHHHHH
Confidence 6778886 777777777765 22346766543211 122223222111 1246667666678999999
Q ss_pred HHHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 149 RKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 149 n~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
-.|...... +++++ -+|+.+....+.++++...+.
T Consensus 90 ~~a~~~l~~~~~~li-~gD~i~~~~~l~~ll~~~~~~ 125 (286)
T TIGR01207 90 IIGEDFIGGDPSALV-LGDNIFYGHDLSDLLKRAAAR 125 (286)
T ss_pred HHHHHHhCCCCEEEE-ECCEeccccCHHHHHHHHHhc
Confidence 999988754 45554 588777667788888766544
No 130
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=92.41 E-value=0.88 Score=37.73 Aligned_cols=96 Identities=14% Similarity=0.222 Sum_probs=58.7
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCCHHHHHHHHHH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHGKGEAIRKGML 153 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~~~~~~~gk~~a~n~g~~ 153 (283)
+....|..+++++.. ...--+|+||-+. +....++++..++. ..++.++.. ..+...+.-.|++
T Consensus 28 ~gkpll~~~i~~~~~---------~~~~~~ivVv~~~---~~~~~~~~~~~~~~~~~~~~~~v~~--g~~r~~sv~~gl~ 93 (230)
T PRK13385 28 VGEPIFIHALRPFLA---------DNRCSKIIIVTQA---QERKHVQDLMKQLNVADQRVEVVKG--GTERQESVAAGLD 93 (230)
T ss_pred CCeEHHHHHHHHHHc---------CCCCCEEEEEeCh---hhHHHHHHHHHhcCcCCCceEEcCC--CchHHHHHHHHHH
Confidence 556667777777654 1223466666542 22222223223322 113455542 2345688888887
Q ss_pred Hc-CCCEEEEEeCCCCC-ChhhHHHHHHHHHHcC
Q 023346 154 HS-RGELLLMLDADGAT-KVTDLEKLESQIHAVG 185 (283)
Q Consensus 154 ~a-~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~ 185 (283)
.. ..++++++|+|..+ +++.++++++.+...+
T Consensus 94 ~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~ 127 (230)
T PRK13385 94 RIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYG 127 (230)
T ss_pred hccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCC
Confidence 75 35789999999877 8999999999987654
No 131
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=92.35 E-value=1 Score=36.77 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=58.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
+....+..+++++.. ...--+|+||-+... .+....+........+.++..+ .|...++..|+++.
T Consensus 26 ~Gkpll~~~i~~l~~---------~~~~~~ivVv~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~si~~al~~~ 91 (218)
T cd02516 26 GGKPVLEHTLEAFLA---------HPAIDEIVVVVPPDD---IDLAKELAKYGLSKVVKIVEGG--ATRQDSVLNGLKAL 91 (218)
T ss_pred CCeEHHHHHHHHHhc---------CCCCCEEEEEeChhH---HHHHHHHHhcccCCCeEEECCc--hHHHHHHHHHHHhc
Confidence 455666666666654 111236777654322 2222221111111134444432 35778899999886
Q ss_pred ---CCCEEEEEeCCCC-CChhhHHHHHHHHHHcC
Q 023346 156 ---RGELLLMLDADGA-TKVTDLEKLESQIHAVG 185 (283)
Q Consensus 156 ---~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~ 185 (283)
..++++++++|.. ++++.++++++.+...+
T Consensus 92 ~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (218)
T cd02516 92 PDADPDIVLIHDAARPFVSPELIDRLIDALKEYG 125 (218)
T ss_pred ccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC
Confidence 5789999999987 49999999999986654
No 132
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=92.34 E-value=1.2 Score=35.73 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=41.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC--CCEEEEEeCCCC-CChhhHHHHHHHHHH
Q 023346 132 NVRIILLGRNHGKGEAIRKGMLHSR--GELLLMLDADGA-TKVTDLEKLESQIHA 183 (283)
Q Consensus 132 ~~~~~~~~~~~gk~~a~n~g~~~a~--~d~i~~~D~D~~-~~~~~l~~~~~~~~~ 183 (283)
++.++.++. .|.+.++..|+++.. ++.++++-+|.- +.++.++++++.+..
T Consensus 65 ~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~ 118 (195)
T TIGR03552 65 GAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE 118 (195)
T ss_pred CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc
Confidence 577777653 499999999998753 469999999987 499999999998753
No 133
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=92.32 E-value=2.9 Score=34.67 Aligned_cols=90 Identities=9% Similarity=0.160 Sum_probs=53.9
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCCHHHHHHHHHH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKGEAIRKGML 153 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~~~gk~~a~n~g~~ 153 (283)
+..+.+...++.+.+ . ..--+|+|+-+ .+ .+.++..++ ++.++..+ ...|.+. +-.+++
T Consensus 24 ~gkpll~~~l~~l~~--------~-~~i~~ivvv~~--~~----~i~~~~~~~---~~~~~~~~~~~~~gt~~-~~~~~~ 84 (239)
T cd02517 24 AGKPMIQHVYERAKK--------A-KGLDEVVVATD--DE----RIADAVESF---GGKVVMTSPDHPSGTDR-IAEVAE 84 (239)
T ss_pred CCcCHHHHHHHHHHh--------C-CCCCEEEEECC--cH----HHHHHHHHc---CCEEEEcCcccCchhHH-HHHHHH
Confidence 456666666666654 1 12346777643 12 223333333 35555443 2345554 444555
Q ss_pred HcCC--CEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346 154 HSRG--ELLLMLDADG-ATKVTDLEKLESQIHAV 184 (283)
Q Consensus 154 ~a~~--d~i~~~D~D~-~~~~~~l~~~~~~~~~~ 184 (283)
.... +.++++++|. .++++.+.++++.+...
T Consensus 85 ~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~ 118 (239)
T cd02517 85 KLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD 118 (239)
T ss_pred hcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 5554 8999999999 77899999999888655
No 134
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=92.18 E-value=1.5 Score=37.03 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=62.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|..+. +.|...|+++.+ . ..--+|+|+-....+...+.+.+...... ..+.++..++..|.+.|+..
T Consensus 25 llpv~g~-plI~~~l~~l~~--------~-~gi~~i~iv~~~~~~~i~~~l~~~~~~~~-~~i~~~~~~~~~Gt~~al~~ 93 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAK--------V-PDLKEVLLIGFYPESVFSDFISDAQQEFN-VPIRYLQEYKPLGTAGGLYH 93 (257)
T ss_pred cCeECCe-eHHHHHHHHHHh--------c-CCCcEEEEEecCCHHHHHHHHHhcccccC-ceEEEecCCccCCcHHHHHH
Confidence 5566665 777776666654 1 12346777765444444444433211111 24555555556788888777
Q ss_pred HHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 151 GMLHS---RGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 151 g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
+.... ..+.++++.+|..... .+..+++.+.+...
T Consensus 94 a~~~l~~~~~~~~lv~~gD~~~~~-dl~~~~~~h~~~~~ 131 (257)
T cd06428 94 FRDQILAGNPSAFFVLNADVCCDF-PLQELLEFHKKHGA 131 (257)
T ss_pred HHHHhhccCCCCEEEEcCCeecCC-CHHHHHHHHHHcCC
Confidence 76654 2467888999998755 48888887766544
No 135
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=91.88 E-value=1.2 Score=35.31 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=42.5
Q ss_pred EEEEEc--CCCCCHHHHHHHHHHHcCCCEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346 133 VRIILL--GRNHGKGEAIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHAV 184 (283)
Q Consensus 133 ~~~~~~--~~~~gk~~a~n~g~~~a~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~ 184 (283)
++++.. +...|...++-.|+++...++++++++|. .+.++.++++++.+...
T Consensus 62 ~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 116 (186)
T TIGR02665 62 LPVVPDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEAS 116 (186)
T ss_pred CcEEecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhcc
Confidence 455554 33478899999999988889999999998 56999999999988653
No 136
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=91.68 E-value=3.4 Score=33.72 Aligned_cols=43 Identities=7% Similarity=0.132 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHcC-----CCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346 142 HGKGEAIRKGMLHSR-----GELLLMLDADGAT-KVTDLEKLESQIHAV 184 (283)
Q Consensus 142 ~gk~~a~n~g~~~a~-----~d~i~~~D~D~~~-~~~~l~~~~~~~~~~ 184 (283)
.|...++..|++... .++++++++|..+ .++.++++++.+.+.
T Consensus 78 ~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~ 126 (223)
T cd02513 78 ASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSE 126 (223)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhC
Confidence 356677777776542 4899999999875 899999999998765
No 137
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=91.66 E-value=2.6 Score=33.71 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=61.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
+....|...++++.+ .. --+|+|+-+..++.+...+++. ...+.. ....|....+..|++..
T Consensus 25 ~GkplI~~vi~~l~~---------~~-i~~I~Vv~~~~~~~~~~~l~~~-------~~~~~~-~~g~G~~~~l~~al~~~ 86 (183)
T TIGR00454 25 CGRCLIDHVLSPLLK---------SK-VNNIIIATSPHTPKTEEYINSA-------YKDYKN-ASGKGYIEDLNECIGEL 86 (183)
T ss_pred CCEEHHHHHHHHHHh---------CC-CCEEEEEeCCCHHHHHHHHhhc-------CcEEEe-cCCCCHHHHHHHHhhcc
Confidence 445666666666654 11 3466666554445555544321 122333 44678888999999863
Q ss_pred -CCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCc
Q 023346 156 -RGELLLMLDADGA-TKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 156 -~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~ 187 (283)
..+.++++-+|.. +.++.+.++++.+...+..
T Consensus 87 ~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~ 120 (183)
T TIGR00454 87 YFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAP 120 (183)
T ss_pred cCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCC
Confidence 3678999999987 4999999999988765544
No 138
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=91.39 E-value=5.5 Score=32.96 Aligned_cols=92 Identities=11% Similarity=0.198 Sum_probs=53.9
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCCHHHHHHHHHH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKGEAIRKGML 153 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~~~gk~~a~n~g~~ 153 (283)
+..+.+...++.+.+ ...--+|+|+-+. +...+. ...+ +++++..+ ...|.+ .+-.+++
T Consensus 25 ~GkPli~~~i~~l~~---------~~~~~~ivv~t~~--~~i~~~----~~~~---~~~v~~~~~~~~~g~~-~~~~a~~ 85 (238)
T PRK13368 25 LGKPMIQHVYERAAQ---------AAGVEEVYVATDD--QRIEDA----VEAF---GGKVVMTSDDHLSGTD-RLAEVML 85 (238)
T ss_pred CCcCHHHHHHHHHHh---------cCCCCeEEEECCh--HHHHHH----HHHc---CCeEEecCccCCCccH-HHHHHHH
Confidence 345556666666554 1123467776431 233333 3333 34444332 223444 3444666
Q ss_pred HcCCCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346 154 HSRGELLLMLDADG-ATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 154 ~a~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~ 186 (283)
....|.++++++|. .+.++.+.++++.+.+.+.
T Consensus 86 ~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~ 119 (238)
T PRK13368 86 KIEADIYINVQGDEPMIRPRDIDTLIQPMLDDPS 119 (238)
T ss_pred hCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCC
Confidence 66678999999998 5689999999998866543
No 139
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=91.19 E-value=3.3 Score=33.75 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=57.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
+....+..+++.+.. ...--+|+|+-+.. ..+.+.+...... .+.++... .+...++..|++..
T Consensus 25 ~gkpll~~~l~~l~~---------~~~~~~ivVv~~~~---~~~~~~~~~~~~~--~~~~~~~~--~~~~~sl~~~l~~~ 88 (217)
T TIGR00453 25 GGRPLLEHTLDAFLA---------HPAIDEVVVVVSPE---DQEFFQKYLVARA--VPKIVAGG--DTRQDSVRNGLKAL 88 (217)
T ss_pred CCeEHHHHHHHHHhc---------CCCCCEEEEEEChH---HHHHHHHHhhcCC--cEEEeCCC--chHHHHHHHHHHhC
Confidence 456666666666654 11234677775422 1122222211111 24444332 24567788888877
Q ss_pred -CCCEEEEEeCCCC-CChhhHHHHHHHHHHc
Q 023346 156 -RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (283)
Q Consensus 156 -~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~ 184 (283)
..|+++++++|.. ++++.++++++.+..+
T Consensus 89 ~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 119 (217)
T TIGR00453 89 KDAEWVLVHDAARPFVPKELLDRLLEALRKA 119 (217)
T ss_pred CCCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 6899999999985 5999999999988764
No 140
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.17 E-value=1.7 Score=40.54 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=62.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|.-+ .+.|...|+++.+ ..--+|+|+-....+ .++++... .++.++..+...|.+.++-.
T Consensus 29 llpi~g-kpli~~~l~~l~~----------~gi~~ivvv~~~~~~----~i~~~~~~---~~i~~v~~~~~~Gt~~al~~ 90 (481)
T PRK14358 29 LHPVAG-RPMVAWAVKAARD----------LGARKIVVVTGHGAE----QVEAALQG---SGVAFARQEQQLGTGDAFLS 90 (481)
T ss_pred ecEECC-eeHHHHHHHHHHh----------CCCCeEEEEeCCCHH----HHHHHhcc---CCcEEecCCCcCCcHHHHHH
Confidence 345544 4666666666654 123467776543222 23333222 25777777667788888888
Q ss_pred HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHHcCCc
Q 023346 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~~ 187 (283)
|++... .+-++++++|. .+.+..++++++.+.+.+..
T Consensus 91 ~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~ 130 (481)
T PRK14358 91 GASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSA 130 (481)
T ss_pred HHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 887753 23367799998 57889999999888765443
No 141
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=91.16 E-value=4.7 Score=33.50 Aligned_cols=95 Identities=14% Similarity=0.035 Sum_probs=56.3
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC-cchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS-DGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 77 e~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
..+.|...|+++.+ ..--+|++|..... +...+.+... ..+. .++.+...+...|.+.|+..+....
T Consensus 30 ~~pli~~~l~~l~~----------~gi~~i~vv~~~~~~~~~~~~l~~~-~~~~-~~i~~~~~~~~~G~~~al~~a~~~~ 97 (240)
T cd02538 30 DKPMIYYPLSTLML----------AGIREILIISTPEDLPLFKELLGDG-SDLG-IRITYAVQPKPGGLAQAFIIGEEFI 97 (240)
T ss_pred CEEhHHHHHHHHHH----------CCCCEEEEEeCcchHHHHHHHHhcc-cccC-ceEEEeeCCCCCCHHHHHHHHHHhc
Confidence 45666666666664 22346777654321 2222222110 1111 2354555555678999998888887
Q ss_pred CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346 156 RGELLLMLDADGATKVTDLEKLESQIHA 183 (283)
Q Consensus 156 ~~d~i~~~D~D~~~~~~~l~~~~~~~~~ 183 (283)
..+-++++.+|..+.+..+.++++.+.+
T Consensus 98 ~~~~~lv~~gD~~~~~~~~~~~~~~~~~ 125 (240)
T cd02538 98 GDDPVCLILGDNIFYGQGLSPILQRAAA 125 (240)
T ss_pred CCCCEEEEECCEEEccHHHHHHHHHHHh
Confidence 6666677789987766678888876654
No 142
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.15 E-value=2.1 Score=39.78 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=61.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|..+ ...|...|+++.+ ...-+++++-....+...+.+ .... ..+.++..+...|.+.++-.
T Consensus 26 llpi~g-kpli~~~l~~l~~----------~g~~~iivvv~~~~~~i~~~~----~~~~-~~~~~~~~~~~~Gt~~si~~ 89 (482)
T PRK14352 26 LHTLAG-RSMLGHVLHAAAG----------LAPQHLVVVVGHDRERVAPAV----AELA-PEVDIAVQDEQPGTGHAVQC 89 (482)
T ss_pred eceeCC-ccHHHHHHHHHHh----------cCCCcEEEEECCCHHHHHHHh----hccC-CccEEEeCCCCCCcHHHHHH
Confidence 445544 4466666666654 122366665543222222222 2211 13555655556788888888
Q ss_pred HHHHcC---CCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346 151 GMLHSR---GELLLMLDADG-ATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 151 g~~~a~---~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~ 186 (283)
|++... .+.++++++|. .+.++.++++++.+.+.+.
T Consensus 90 al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~ 129 (482)
T PRK14352 90 ALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGN 129 (482)
T ss_pred HHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCC
Confidence 888754 37899999998 5789999999998766543
No 143
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=91.15 E-value=11 Score=34.49 Aligned_cols=97 Identities=13% Similarity=0.068 Sum_probs=55.5
Q ss_pred CCCCceEEEEEeec-CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHH------HHcCCCcEE
Q 023346 62 DPAEKYISLIIPAF-NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV------RKYTVDNVR 134 (283)
Q Consensus 62 ~~~~p~vsviip~~-ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~------~~~~~~~~~ 134 (283)
.+..|++.-+|.++ ++.+.++++|+++-. ..+.=+|-+|--|++.-...+.... ...+ ++.
T Consensus 74 ~~~~~r~AYLI~~h~~d~~~l~RLL~aLYh----------prN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~--NV~ 141 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGDLEKLWRTLRALYH----------PRNQYVVHLDLESPAEERLELASRVENDPMFSKVG--NVY 141 (421)
T ss_pred CCCCCeEEEEEEecCCcHHHHHHHHHHhcC----------CCceEEEEecCCCChHHHHHHHHHhhccchhhccC--cEE
Confidence 44578999999998 666666666555532 2233445566667665433332222 2344 888
Q ss_pred EEEcCC--C-CCHH--HH-H---HHHHHH-cCCCEEEEEeCCCCCC
Q 023346 135 IILLGR--N-HGKG--EA-I---RKGMLH-SRGELLLMLDADGATK 170 (283)
Q Consensus 135 ~~~~~~--~-~gk~--~a-~---n~g~~~-a~~d~i~~~D~D~~~~ 170 (283)
++.... . +|.+ .| + ...++. ...||+..+-+.+.+-
T Consensus 142 vl~k~~~V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPL 187 (421)
T PLN03183 142 MITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPL 187 (421)
T ss_pred EEecceeeccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccc
Confidence 876532 2 3432 12 1 122232 3568999999888883
No 144
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=90.98 E-value=1.5 Score=40.18 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=58.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|..+ .+.|...|+.+.. ..--+++|+-....+...+ +..... ..+.++......|.+.++-.
T Consensus 27 ll~v~g-kpli~~~l~~l~~----------~gi~~ivvv~~~~~~~i~~----~~~~~~-~~~~~~~~~~~~G~~~sl~~ 90 (446)
T PRK14353 27 LHPVAG-RPMLAHVLAAAAS----------LGPSRVAVVVGPGAEAVAA----AAAKIA-PDAEIFVQKERLGTAHAVLA 90 (446)
T ss_pred cCEECC-chHHHHHHHHHHh----------CCCCcEEEEECCCHHHHHH----HhhccC-CCceEEEcCCCCCcHHHHHH
Confidence 344444 4666666666654 1224666665433222222 222221 13444444456788888888
Q ss_pred HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHH
Q 023346 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHA 183 (283)
Q Consensus 151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~ 183 (283)
+++... .+.++++++|. .++++.++++++.+++
T Consensus 91 a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~ 126 (446)
T PRK14353 91 AREALAGGYGDVLVLYGDTPLITAETLARLRERLAD 126 (446)
T ss_pred HHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhc
Confidence 887652 57788899998 6799999999986654
No 145
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=90.70 E-value=4 Score=34.01 Aligned_cols=89 Identities=6% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc--CCCCCHHHHHHHHHH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL--GRNHGKGEAIRKGML 153 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~--~~~~gk~~a~n~g~~ 153 (283)
+....|...++.+.+ . ..-+|+|+-+ .+...+. ...+ +++++.. +...|.+.... ++.
T Consensus 25 ~Gkpll~~~l~~l~~---------~-~i~~ivvv~~--~~~i~~~----~~~~---~~~v~~~~~~~~~gt~~~~~-~~~ 84 (245)
T PRK05450 25 GGKPMIVRVYERASK---------A-GADRVVVATD--DERIADA----VEAF---GGEVVMTSPDHPSGTDRIAE-AAA 84 (245)
T ss_pred CCcCHHHHHHHHHHh---------c-CCCeEEEECC--cHHHHHH----HHHc---CCEEEECCCcCCCchHHHHH-HHH
Confidence 445666666666654 1 2346776653 1222222 2232 3444433 33345444333 333
Q ss_pred Hc---CCCEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346 154 HS---RGELLLMLDADG-ATKVTDLEKLESQIHAV 184 (283)
Q Consensus 154 ~a---~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~ 184 (283)
.. ..+.++++++|. .++++.++++++.+...
T Consensus 85 ~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~ 119 (245)
T PRK05450 85 KLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANP 119 (245)
T ss_pred hcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcC
Confidence 32 468899999999 67999999999988654
No 146
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=90.67 E-value=3.6 Score=33.99 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346 141 NHGKGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHAV 184 (283)
Q Consensus 141 ~~gk~~a~n~g~~~a----~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~ 184 (283)
..|...++..|++.. ..|+++++++|..+ .++.++++++.+.+.
T Consensus 75 ~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~ 123 (222)
T TIGR03584 75 FTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQP 123 (222)
T ss_pred CCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhC
Confidence 456778888888764 36999999999888 899999999999874
No 147
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=90.43 E-value=0.69 Score=44.51 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=43.0
Q ss_pred CcEEEEEcCCCCC-----HHHHHHHHHHHc----CCCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346 131 DNVRIILLGRNHG-----KGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHA 183 (283)
Q Consensus 131 ~~~~~~~~~~~~g-----k~~a~n~g~~~a----~~d~i~~~D~D~~~-~~~~l~~~~~~~~~ 183 (283)
+.+.++.++++.| |++|+|..++.+ .+++|+.+|+|... .|..+++.+=.|-+
T Consensus 166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d 228 (720)
T PF03552_consen 166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMD 228 (720)
T ss_pred CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhcc
Confidence 3788888876655 999999988754 79999999999977 68888887776654
No 148
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=89.96 E-value=4.9 Score=34.37 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=57.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH-cCCCcEEEEEcCCCCCHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK-YTVDNVRIILLGRNHGKGEAIR 149 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~~~~~~~~~~~gk~~a~n 149 (283)
.+|..+....|..+++++.. ....-+|+||-+.. -.+.+++...+ .+ .+.++..+...|.+.|+.
T Consensus 26 ll~l~g~~~li~~~l~~l~~---------~~~~~~i~vvt~~~---~~~~v~~~l~~~~~--~~~ii~ep~~~gTa~ai~ 91 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKG---------LVPPDRILVVTNEE---YRFLVREQLPEGLP--EENIILEPEGRNTAPAIA 91 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhc---------CCCCCcEEEEechH---HHHHHHHHHhhcCC--CceEEECCCCCCcHHHHH
Confidence 45666666667777766654 11134777776521 12233333322 23 677887777788888887
Q ss_pred HHHHHcC----CCEEEEEeCCCCCC-hhhHHHHHH
Q 023346 150 KGMLHSR----GELLLMLDADGATK-VTDLEKLES 179 (283)
Q Consensus 150 ~g~~~a~----~d~i~~~D~D~~~~-~~~l~~~~~ 179 (283)
.++.... .++++++.+|..+. ...+.++++
T Consensus 92 ~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~ 126 (274)
T cd02509 92 LAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVK 126 (274)
T ss_pred HHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHH
Confidence 7776643 57999999998875 344444443
No 149
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=89.87 E-value=3.2 Score=38.26 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=59.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|.-+. +.|..+|+++.+ ..--+++++-....+ .++++... .+.++..+...|.+.++..
T Consensus 24 ll~i~Gk-pli~~~l~~l~~----------~gi~~iivvv~~~~~----~i~~~~~~----~~~~~~~~~~~g~~~al~~ 84 (458)
T PRK14354 24 LHKVCGK-PMVEHVVDSVKK----------AGIDKIVTVVGHGAE----EVKEVLGD----RSEFALQEEQLGTGHAVMQ 84 (458)
T ss_pred hCEeCCc-cHHHHHHHHHHh----------CCCCeEEEEeCCCHH----HHHHHhcC----CcEEEEcCCCCCHHHHHHH
Confidence 3455554 777777777665 112355555432222 22222211 2455555556788888888
Q ss_pred HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (283)
Q Consensus 151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~ 184 (283)
+++... .+.++++++|. .+.++.++++++.+.+.
T Consensus 85 a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~ 121 (458)
T PRK14354 85 AEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEH 121 (458)
T ss_pred HHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhc
Confidence 887754 47899999998 57899999999887654
No 150
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=89.81 E-value=2.7 Score=33.94 Aligned_cols=104 Identities=15% Similarity=0.087 Sum_probs=64.0
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC----CCcEEEEEc------CC
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT----VDNVRIILL------GR 140 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~~~~~~~~~------~~ 140 (283)
++|..|..+.|...++.+.+ ..--+++||-....+...+.+.+. ..+. ..+++++.. +.
T Consensus 23 llpv~g~~pli~~~l~~l~~----------~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVN----------SGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLFILPPQQRKGGDW 91 (200)
T ss_pred eeEECCeeeeHHHHHHHHHH----------CCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEEEeCcccCCCCCc
Confidence 67777764677777777765 224578877665443333333211 0010 113555541 33
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 141 NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 141 ~~gk~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
..|-+.|+..|..... .+.++++.+|. +.+..+.++++.+.+.+.
T Consensus 92 ~~Gta~al~~a~~~i~~~~~~~~lv~~gD~-v~~~~~~~~l~~~~~~~~ 139 (200)
T cd02508 92 YRGTADAIYQNLDYIERSDPEYVLILSGDH-IYNMDYREMLDFHIESGA 139 (200)
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEecCCE-EEecCHHHHHHHHHHcCC
Confidence 5788999988887653 57888999998 455678888887766543
No 151
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=89.29 E-value=2.3 Score=39.14 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=57.3
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
+..+.+...++++.. ...-+++||-....+ .++++... ..++++.++...|.+.++..+++..
T Consensus 31 ~gkpli~~~l~~l~~----------~~~~~iivv~~~~~~----~i~~~~~~---~~~~~v~~~~~~Gt~~al~~a~~~l 93 (456)
T PRK14356 31 LGEPMLRFVYRALRP----------LFGDNVWTVVGHRAD----MVRAAFPD---EDARFVLQEQQLGTGHALQCAWPSL 93 (456)
T ss_pred CCCcHHHHHHHHHHh----------cCCCcEEEEECCCHH----HHHHhccc---cCceEEEcCCCCCcHHHHHHHHHHH
Confidence 445666666665543 222367666543222 22222221 2567777766678787887777654
Q ss_pred ---CCCEEEEEeCCC-CCChhhHHHHHHHHH
Q 023346 156 ---RGELLLMLDADG-ATKVTDLEKLESQIH 182 (283)
Q Consensus 156 ---~~d~i~~~D~D~-~~~~~~l~~~~~~~~ 182 (283)
..+.++++++|. .++++.++++++...
T Consensus 94 ~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 94 TAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred hhcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 358999999999 578999999998764
No 152
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=89.27 E-value=2.9 Score=34.06 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=54.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCCHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~gk~~a~ 148 (283)
++|..|. ..|..+|+++.. ..--+|+|+-+.. .+.++++..+. ...++.++..+...|.+.++
T Consensus 23 ll~~~g~-pli~~~l~~l~~----------~~~~~iivv~~~~----~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l 87 (220)
T cd06426 23 MLKVGGK-PILETIIDRFIA----------QGFRNFYISVNYL----AEMIEDYFGDGSKFGVNISYVREDKPLGTAGAL 87 (220)
T ss_pred cCeECCc-chHHHHHHHHHH----------CCCcEEEEECccC----HHHHHHHHCCccccCccEEEEECCCCCcchHHH
Confidence 3444554 677777777665 1122666665432 22222322211 11235555554456767776
Q ss_pred HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
..+.+ ...+.++++.+|.... ..+.++++.+.+...
T Consensus 88 ~~~~~-~~~~~~lv~~~D~i~~-~~~~~l~~~~~~~~~ 123 (220)
T cd06426 88 SLLPE-KPTDPFLVMNGDILTN-LNYEHLLDFHKENNA 123 (220)
T ss_pred HHHHh-hCCCCEEEEcCCEeec-cCHHHHHHHHHhcCC
Confidence 54443 3367788889997554 567788887766543
No 153
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=89.12 E-value=4.1 Score=34.46 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=41.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChh--hHHHHHHHHHHcCC
Q 023346 132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT--DLEKLESQIHAVGR 186 (283)
Q Consensus 132 ~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~--~l~~~~~~~~~~~~ 186 (283)
.+.++..+...|.+.++..+......+-++++.+|..+... .+.++++.+.+...
T Consensus 94 ~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 94 NIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 45566666668999999999988766777888899887654 58999988765433
No 154
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=88.91 E-value=12 Score=31.31 Aligned_cols=88 Identities=8% Similarity=0.152 Sum_probs=51.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc-C-CCCCHHHHHHHHHH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-G-RNHGKGEAIRKGML 153 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~-~-~~~gk~~a~n~g~~ 153 (283)
+....|..+++.+.+ . .--+|+|+-|. +. +.+...++ +++++.. + ...|.. ....+++
T Consensus 22 ~GkPli~~~le~~~~---------~-~~d~VvVvt~~--~~----i~~~~~~~---g~~~v~~~~~~~~Gt~-r~~~~~~ 81 (238)
T TIGR00466 22 FGKPMIVHVAENANE---------S-GADRCIVATDD--ES----VAQTCQKF---GIEVCMTSKHHNSGTE-RLAEVVE 81 (238)
T ss_pred CCcCHHHHHHHHHHh---------C-CCCeEEEEeCH--HH----HHHHHHHc---CCEEEEeCCCCCChhH-HHHHHHH
Confidence 456667777777654 1 23467776542 22 23333333 3455442 2 233422 2233333
Q ss_pred H---cCCCEEEEEeCCCC-CChhhHHHHHHHHHH
Q 023346 154 H---SRGELLLMLDADGA-TKVTDLEKLESQIHA 183 (283)
Q Consensus 154 ~---a~~d~i~~~D~D~~-~~~~~l~~~~~~~~~ 183 (283)
. ...|+++++|+|.- +.++.++++++.+.+
T Consensus 82 ~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~ 115 (238)
T TIGR00466 82 KLALKDDERIVNLQGDEPFIPKEIIRQVADNLAT 115 (238)
T ss_pred HhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhc
Confidence 2 25689999999988 599999999999854
No 155
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=88.44 E-value=7.8 Score=32.57 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChh--hHHHHHHHHHHcCCc
Q 023346 132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT--DLEKLESQIHAVGRK 187 (283)
Q Consensus 132 ~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~--~l~~~~~~~~~~~~~ 187 (283)
++.+.......|.+.++-.+......+-++++.+|..+... .+.++++.+.+.+..
T Consensus 94 ~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ 151 (260)
T TIGR01099 94 TIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCS 151 (260)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCC
Confidence 34455455568899999888887655667778888887654 789999888765443
No 156
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=88.33 E-value=9.2 Score=31.20 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=58.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc----C-CCcEEEEEcCCCCCHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY----T-VDNVRIILLGRNHGKG 145 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~----~-~~~~~~~~~~~~~gk~ 145 (283)
++|.-|. +.|..+|+.+.+ ..--+|+||-... ..+.++++..+. . ...+.+.......|.+
T Consensus 25 Llpv~g~-pli~~~l~~l~~----------~g~~~iivv~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~ 90 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEK----------AGFEDVIVVVPEE---EQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTA 90 (214)
T ss_pred cCEECCe-eHHHHHHHHHHH----------CCCCeEEEEECHH---HHHHHHHHHHhcccccCcceeEEEecCCCCcChH
Confidence 4555554 667777777665 2234777776421 122233333322 1 0123333344568999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
.++..+......+ ++++.+|.. .+..+..+++.+.+.+.
T Consensus 91 ~al~~~~~~i~~d-~lv~~~D~i-~~~~l~~~l~~h~~~~~ 129 (214)
T cd04198 91 DSLRHIRKKIKKD-FLVLSCDLI-TDLPLIELVDLHRSHDA 129 (214)
T ss_pred HHHHHHHhhcCCC-EEEEeCccc-cccCHHHHHHHHhccCC
Confidence 9999988877665 677888854 45567788877765543
No 157
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.30 E-value=4.8 Score=33.10 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=54.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHH-HHHHcCCCcEEEEEc-CCCCCHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD-FVRKYTVDNVRIILL-GRNHGKGEAI 148 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~-~~~~~~~~~~~~~~~-~~~~gk~~a~ 148 (283)
++|..+. +.|..+|+++.+ ..--+++||-. ......+.+.+ +..... ++.++.. +...|.+.++
T Consensus 23 ll~i~g~-pli~~~l~~l~~----------~g~~~ivvv~~-~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~g~~~~l 88 (231)
T cd04183 23 LIEVDGK-PMIEWVIESLAK----------IFDSRFIFICR-DEHNTKFHLDESLKLLAP--NATVVELDGETLGAACTV 88 (231)
T ss_pred eeEECCE-EHHHHHHHhhhc----------cCCceEEEEEC-hHHhhhhhHHHHHHHhCC--CCEEEEeCCCCCcHHHHH
Confidence 3455554 666666666654 12235565553 22222222222 222222 4444433 3467889999
Q ss_pred HHHHHHcC-CCEEEEEeCCCCCChhhHHHHHHHH
Q 023346 149 RKGMLHSR-GELLLMLDADGATKVTDLEKLESQI 181 (283)
Q Consensus 149 n~g~~~a~-~d~i~~~D~D~~~~~~~l~~~~~~~ 181 (283)
-.|..... .+.++++.+|.....+... ++..+
T Consensus 89 ~~a~~~l~~~~~~lv~~~D~i~~~~~~~-~~~~~ 121 (231)
T cd04183 89 LLAADLIDNDDPLLIFNCDQIVESDLLA-FLAAF 121 (231)
T ss_pred HHHHhhcCCCCCEEEEecceeeccCHHH-HHHHh
Confidence 88888764 4778889999998877554 44443
No 158
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=88.15 E-value=11 Score=29.72 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=59.0
Q ss_pred ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHH
Q 023346 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQI 181 (283)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~ 181 (283)
-.||+++-+-++..|.+.+++. .+.+++.+ ..|.-.-+|.+++....+ ++++-+|-.+ .|..+..+++.+
T Consensus 41 ~d~i~v~isp~tp~t~~~~~~~-------gv~vi~tp-G~GYv~Dl~~al~~l~~P-~lvvsaDLp~l~~~~i~~vi~~~ 111 (177)
T COG2266 41 VDEIIVAISPHTPKTKEYLESV-------GVKVIETP-GEGYVEDLRFALESLGTP-ILVVSADLPFLNPSIIDSVIDAA 111 (177)
T ss_pred cCcEEEEeCCCCHhHHHHHHhc-------CceEEEcC-CCChHHHHHHHHHhcCCc-eEEEecccccCCHHHHHHHHHHH
Confidence 4589999999999999988765 68999887 778999999999988774 5556677555 899999999988
Q ss_pred H
Q 023346 182 H 182 (283)
Q Consensus 182 ~ 182 (283)
.
T Consensus 112 ~ 112 (177)
T COG2266 112 A 112 (177)
T ss_pred h
Confidence 7
No 159
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=87.79 E-value=2.4 Score=38.02 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHcCCCEEEEEeCCC-CCChhhHHHHHHHHHHcC
Q 023346 142 HGKGEAIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 142 ~gk~~a~n~g~~~a~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~ 185 (283)
.|...++-.|+++...++++++++|. .++++.++++++.+...+
T Consensus 78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~ 122 (366)
T PRK14489 78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEG 122 (366)
T ss_pred CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccC
Confidence 58888899999998889999999996 469999999999876543
No 160
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=87.56 E-value=5.5 Score=35.85 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=57.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
+..+.+..+++.+.+ ...--+|+||-+.. ..+..+.+..... .++++.. ..+...++..|++..
T Consensus 31 ~GkPll~~tl~~l~~---------~~~i~~IvVVv~~~---~~~~~~~~~~~~~--~v~~v~g--G~~r~~SV~~gL~~l 94 (378)
T PRK09382 31 GGKPLWLHVLENLSS---------APAFKEIVVVIHPD---DIAYMKKALPEIK--FVTLVTG--GATRQESVRNALEAL 94 (378)
T ss_pred CCeeHHHHHHHHHhc---------CCCCCeEEEEeChH---HHHHHHHhcccCC--eEEEeCC--CchHHHHHHHHHHhc
Confidence 556677777777665 11123677765422 2233333322222 2444332 234677788888887
Q ss_pred CCCEEEEEeCCCC-CChhhHHHHHHHHHHc
Q 023346 156 RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (283)
Q Consensus 156 ~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~ 184 (283)
..|++++.|+|.. ++++.++++++.+...
T Consensus 95 ~~d~VLVhdadrPfv~~e~I~~li~~~~~~ 124 (378)
T PRK09382 95 DSEYVLIHDAARPFVPKELIDRLIEALDKA 124 (378)
T ss_pred CCCeEEEeeccccCCCHHHHHHHHHHhhcC
Confidence 7799999999964 4899999999987654
No 161
>KOG3917 consensus Beta-1,4-galactosyltransferase B4GALT7/SQV-3 [Carbohydrate transport and metabolism]
Probab=87.50 E-value=1.9 Score=35.25 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=53.3
Q ss_pred CCCCCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 023346 59 SVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL 138 (283)
Q Consensus 59 ~~~~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~ 138 (283)
-..+...-++.|++|.+.+-+.+.+.+..+.+.+..+ ...-+|+|++. .| .+
T Consensus 67 ~~~~aS~HklavlVPfRdRfEELl~FvPHM~~FL~rq-----~v~HHI~vlNQ--vD----------------~f----- 118 (310)
T KOG3917|consen 67 LQTGASYHKLAVLVPFRDRFEELLEFVPHMSKFLHRQ-----NVSHHILVLNQ--VD----------------PF----- 118 (310)
T ss_pred cccCccceeEEEEechHHHHHHHHHhhHHHHHHHhhc-----CcceEEEEeec--cC----------------cc-----
Confidence 3445567889999999888776666666666655532 33445555542 11 11
Q ss_pred CCCCCHHHHHHHHHHHcC--CCEEEEEeCCCCCC
Q 023346 139 GRNHGKGEAIRKGMLHSR--GELLLMLDADGATK 170 (283)
Q Consensus 139 ~~~~gk~~a~n~g~~~a~--~d~i~~~D~D~~~~ 170 (283)
+.+.+.-+|.|+..|. .|||++-|-|-.+-
T Consensus 119 --RFNRAsLINVGf~eas~~~DYiaMhDVDLLPl 150 (310)
T KOG3917|consen 119 --RFNRASLINVGFNEASRLCDYIAMHDVDLLPL 150 (310)
T ss_pred --eechhhheecchhhhcchhceeeecccccccC
Confidence 2345666777777664 79999999998763
No 162
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=87.47 E-value=4.2 Score=34.95 Aligned_cols=105 Identities=11% Similarity=0.080 Sum_probs=63.8
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC---C--
Q 023346 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---N-- 141 (283)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~---~-- 141 (283)
.++||....|-...+..++.|++. ....++++.|++|+.+++..+.+.+...... ..+.++..+. .
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~--------n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~-~~i~f~~i~~~~~~~~ 72 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLF--------YRRNPLHFHLITDEIARRILATLFQTWMVPA-VEVSFYNAEELKSRVS 72 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHH--------cCCCCEEEEEEECCcCHHHHHHHHHhccccC-cEEEEEEhHHhhhhhc
Confidence 377888775556777888888887 3455799999999887776666654433322 2455555421 0
Q ss_pred ----CCHHHH---HHHHHH-Hc--CCCEEEEEeCCCCCChhhHHHHHHHH
Q 023346 142 ----HGKGEA---IRKGML-HS--RGELLLMLDADGATKVTDLEKLESQI 181 (283)
Q Consensus 142 ----~gk~~a---~n~g~~-~a--~~d~i~~~D~D~~~~~~~l~~~~~~~ 181 (283)
...+.+ ....+. .- .-|=++.+|+|.++.. .|+++.+.+
T Consensus 73 ~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~-di~eL~~~~ 121 (280)
T cd06431 73 WIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFAT-DIAELWKIF 121 (280)
T ss_pred cCcccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcC-CHHHHHHHh
Confidence 111111 111222 22 3689999999998864 455666654
No 163
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=87.45 E-value=6 Score=35.06 Aligned_cols=100 Identities=11% Similarity=0.149 Sum_probs=59.2
Q ss_pred eecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCC-CCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHH
Q 023346 73 PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG-SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKG 151 (283)
Q Consensus 73 p~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~-s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g 151 (283)
|.-+. +.+...|+++.+ ..--+++|+-.. ..+...+.+.+. ..+. .++.++..+...|.+.++-.+
T Consensus 26 pv~g~-pli~~~l~~l~~----------~gi~~i~vv~~~~~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~G~~~al~~a 92 (353)
T TIGR01208 26 PVANK-PILQYAIEDLAE----------AGITDIGIVVGPVTGEEIKEIVGEG-ERFG-AKITYIVQGEPLGLAHAVYTA 92 (353)
T ss_pred EECCE-eHHHHHHHHHHH----------CCCCEEEEEeCCCCHHHHHHHHhcc-cccC-ceEEEEECCCCCCHHHHHHHH
Confidence 44454 777777777765 223467666554 322233332211 1111 245566555578999999999
Q ss_pred HHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 152 MLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 152 ~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
++....+-++++.+|...+ ..+.++++.+.+...
T Consensus 93 ~~~l~~~~~li~~gD~~~~-~~l~~l~~~~~~~~~ 126 (353)
T TIGR01208 93 RDFLGDDDFVVYLGDNLIQ-DGISRFVKSFEEKDY 126 (353)
T ss_pred HHhcCCCCEEEEECCeecC-ccHHHHHHHHHhcCC
Confidence 8877544456678998775 567788887765443
No 164
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=87.31 E-value=6.9 Score=31.45 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=52.5
Q ss_pred CCceEEEEEeCCCC--cc-hHHHHHHHHHHcCCCcEEEEEcCCC-CC----HHHHHHHHHHHcC-CCEEEEEeCCCCCCh
Q 023346 101 SFTYEVLIIDDGSS--DG-TKRVAFDFVRKYTVDNVRIILLGRN-HG----KGEAIRKGMLHSR-GELLLMLDADGATKV 171 (283)
Q Consensus 101 ~~~~eiivvdd~s~--d~-t~~~~~~~~~~~~~~~~~~~~~~~~-~g----k~~a~n~g~~~a~-~d~i~~~D~D~~~~~ 171 (283)
...++++++-..+. +. ..+.+.+-.+++. .+-.....+. .+ --.+++.+.+++. .++++.+|+|..+.+
T Consensus 18 ~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~--Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~ 95 (195)
T PF01762_consen 18 GVRVKVVFVVGESPNSDSDLQEALQEEAEKYG--DILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNP 95 (195)
T ss_pred CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcC--ceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEeh
Confidence 45777777776655 33 2333444445555 5655554432 22 2366677777776 899999999999999
Q ss_pred hhHHHHHHHH
Q 023346 172 TDLEKLESQI 181 (283)
Q Consensus 172 ~~l~~~~~~~ 181 (283)
+.|.+.+...
T Consensus 96 ~~l~~~L~~~ 105 (195)
T PF01762_consen 96 DRLVSFLKSL 105 (195)
T ss_pred HHhhhhhhhc
Confidence 8888877776
No 165
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=87.18 E-value=1.8 Score=35.35 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=40.9
Q ss_pred ceEEEEEeCCCCc--chHHHHHHHHHHcCCCcEEEEEc--CC-------CCCH---HHHHHHHHHHcC-------CCEEE
Q 023346 103 TYEVLIIDDGSSD--GTKRVAFDFVRKYTVDNVRIILL--GR-------NHGK---GEAIRKGMLHSR-------GELLL 161 (283)
Q Consensus 103 ~~eiivvdd~s~d--~t~~~~~~~~~~~~~~~~~~~~~--~~-------~~gk---~~a~n~g~~~a~-------~d~i~ 161 (283)
++.-|||+|+..- .+..++++. ++.+.+. +. +..+ ...+|.|++..+ .-+|.
T Consensus 10 ~l~WIVVEd~~~~~~~v~~lL~~s-------gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVy 82 (207)
T PF03360_consen 10 PLHWIVVEDSEETTPLVARLLRRS-------GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVY 82 (207)
T ss_dssp SEEEEEEESSSS--HHHHHHHHHH-------TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHc-------CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEE
Confidence 8999999998643 255666554 2333322 21 1112 458899998765 35888
Q ss_pred EEeCCCCCChhhHHHH
Q 023346 162 MLDADGATKVTDLEKL 177 (283)
Q Consensus 162 ~~D~D~~~~~~~l~~~ 177 (283)
|.|+|...+...+++|
T Consensus 83 FaDDdNtYdl~LF~em 98 (207)
T PF03360_consen 83 FADDDNTYDLRLFDEM 98 (207)
T ss_dssp E--TTSEE-HHHHHHH
T ss_pred ECCCCCeeeHHHHHHH
Confidence 9999999988887774
No 166
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=86.92 E-value=3.7 Score=33.16 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=46.8
Q ss_pred cEEEEEcCCCC-CHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHHHHcC
Q 023346 132 NVRIILLGRNH-GKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVG 185 (283)
Q Consensus 132 ~~~~~~~~~~~-gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~ 185 (283)
.+.++...... |.-.++-.|+++..+++++++=.|+-. .++.++++.+.+.+.+
T Consensus 61 g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 GLPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 46777776665 999999999999999999999999887 7888999999887766
No 167
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=86.90 E-value=8.8 Score=32.20 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 141 NHGKGEAIRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 141 ~~gk~~a~n~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
..|.+.++-.+.+...+ +.++++++|.....+. ..+++.+.....
T Consensus 101 ~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~~~ 146 (253)
T cd02524 101 NTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSHGK 146 (253)
T ss_pred ccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHcCC
Confidence 34568888888888765 8899999999887766 888876655433
No 168
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=86.53 E-value=6.3 Score=36.16 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=62.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|..+. +.+..+|+++.+ . . -+|+|+-+... +.+.++... .+.++..+...|.+.++..
T Consensus 22 l~~v~gk-pli~~~l~~l~~--------~-~--~~i~vv~~~~~----~~i~~~~~~----~~~~~~~~~~~g~~~ai~~ 81 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKK--------V-A--QKVGVVLGHEA----ELVKKLLPE----WVKIFLQEEQLGTAHAVMC 81 (448)
T ss_pred eeEECCe-eHHHHHHHHHHh--------c-C--CcEEEEeCCCH----HHHHHhccc----ccEEEecCCCCChHHHHHH
Confidence 5566554 777777776665 1 1 35666654221 233333221 3555655556788899988
Q ss_pred HHHHcC-CCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346 151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 151 g~~~a~-~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~ 186 (283)
+++... .+.++++++|. .+.+..++++++.+.+.+.
T Consensus 82 a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~ 119 (448)
T PRK14357 82 ARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGA 119 (448)
T ss_pred HHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCC
Confidence 888764 58999999998 5688889999988865433
No 169
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=86.44 E-value=11 Score=33.78 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=67.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCCHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~gk~~a~ 148 (283)
++|.-| .+.|.-.|+++.+ ..--|++++-. ...+.++++.... ...++.++......|-+.++
T Consensus 26 llpI~g-kPii~~~l~~L~~----------~Gv~eivi~~~----y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l 90 (358)
T COG1208 26 LLPIAG-KPLIEYVLEALAA----------AGVEEIVLVVG----YLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGAL 90 (358)
T ss_pred cceeCC-ccHHHHHHHHHHH----------CCCcEEEEEec----cchHHHHHHHhcccccCCceEEEecCCcCccHHHH
Confidence 345544 3445555555543 33557777733 2333333333331 12478888888789999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
-.+.....++-++++.+|...+-+ +..+++...+.
T Consensus 91 ~~a~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 91 KNALDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred HHHHHhcCCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 999999988889999999999999 99999988877
No 170
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=86.21 E-value=13 Score=32.23 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCC-CEEEEEeCCCCCCh-------hhHHHHHHHHHHcC
Q 023346 132 NVRIILLGRNHGKGEAIRKGMLHSRG-ELLLMLDADGATKV-------TDLEKLESQIHAVG 185 (283)
Q Consensus 132 ~~~~~~~~~~~gk~~a~n~g~~~a~~-d~i~~~D~D~~~~~-------~~l~~~~~~~~~~~ 185 (283)
+++++..++..|-+.|+-.+...... +++++ -+|...++ -.++++++.+.+..
T Consensus 98 ~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv-~gD~l~~~~~~~~~~~~l~~li~~~~~~~ 158 (297)
T TIGR01105 98 TIMNVRQAQPLGLGHSILCARPVVGDNPFVVV-LPDIIIDDATADPLRYNLAAMIARFNETG 158 (297)
T ss_pred eEEEeeCCCcCchHHHHHHHHHHhCCCCEEEE-ECCeeccccccccchhHHHHHHHHHHHhC
Confidence 46777777789999999999888753 55554 48887754 37888888775443
No 171
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=85.32 E-value=5.9 Score=36.49 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=58.0
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~ 150 (283)
++|..+ ...++..++++.+ ..--+++++-.... +.+++.... .+++++..++..|.+.++-.
T Consensus 27 l~~i~g-kpli~~~i~~l~~----------~gi~~i~vv~~~~~----~~i~~~~~~---~~~~~i~~~~~~Gt~~al~~ 88 (456)
T PRK09451 27 LHTLAG-KPMVQHVIDAANE----------LGAQHVHLVYGHGG----DLLKQTLAD---EPLNWVLQAEQLGTGHAMQQ 88 (456)
T ss_pred cceeCC-hhHHHHHHHHHHh----------cCCCcEEEEECCCH----HHHHHhhcc---CCcEEEECCCCCCcHHHHHH
Confidence 344444 4555566665543 12336666654221 223332221 15677766666788888888
Q ss_pred HHHHcC-CCEEEEEeCCC-CCChhhHHHHHHHHH
Q 023346 151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIH 182 (283)
Q Consensus 151 g~~~a~-~d~i~~~D~D~-~~~~~~l~~~~~~~~ 182 (283)
++.... .+.++++++|. .+.+..++++++...
T Consensus 89 a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~ 122 (456)
T PRK09451 89 AAPFFADDEDILMLYGDVPLISVETLQRLRDAKP 122 (456)
T ss_pred HHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhh
Confidence 887753 57899999998 568888999887643
No 172
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=84.67 E-value=5.1 Score=34.98 Aligned_cols=97 Identities=9% Similarity=0.025 Sum_probs=56.1
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcc-hHHHHHHH-HHHcCCCcEEEE--EcCCCCC------HH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG-TKRVAFDF-VRKYTVDNVRII--LLGRNHG------KG 145 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~-t~~~~~~~-~~~~~~~~~~~~--~~~~~~g------k~ 145 (283)
.++....+|++++.+ ..|..|||+.-=..+|- ..+ ..++ ..+.| +..++ ......| .-
T Consensus 17 ~~~~~t~~~l~siR~---------~~P~A~IILSTW~~~d~~~l~-~D~vv~s~DP--G~~~~~~~~~~~~~~~NiNrQi 84 (311)
T PF07507_consen 17 QEPDITKNCLASIRK---------HFPGAEIILSTWEGQDISGLD-YDQVVISDDP--GSNVVLYKKDGKPGPNNINRQI 84 (311)
T ss_pred ccchhHHHHHHHHHH---------hCCCCEEEEECCCCCCcccCC-cceEEecCCC--CcceeeccCCCCCcccchhHHH
Confidence 456667888888876 46688999943211111 111 1111 12223 33332 1111112 12
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
.+-..|+++++.+|++=+-+|..+..+.+-++.+.+.+.
T Consensus 85 ~St~aGL~~~~~~Ya~KlRtD~~l~~~~~l~~~~~~~~~ 123 (311)
T PF07507_consen 85 VSTLAGLKAAKTKYAMKLRTDNRLTGNNFLDLYEKYPDR 123 (311)
T ss_pred HHHHHHHHHhCCceEEEEcccccccchHHHHHHHHhccc
Confidence 333569999999999999999999877766666665553
No 173
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=84.41 E-value=6.7 Score=33.52 Aligned_cols=100 Identities=22% Similarity=0.214 Sum_probs=48.8
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCCH--
Q 023346 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGK-- 144 (283)
Q Consensus 69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~gk-- 144 (283)
-|||++.+. .+...+ .+++.++.. -...++||+.--+ +|-+.+..+++.... ...+++-+..++..++
T Consensus 3 GIVi~~g~~--~~~~a~-~lI~~LR~~---g~~LPIEI~~~~~--~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~~~ 74 (271)
T PF11051_consen 3 GIVITAGDK--YLWLAL-RLIRVLRRL---GNTLPIEIIYPGD--DDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGKSF 74 (271)
T ss_pred EEEEEecCc--cHHHHH-HHHHHHHHh---CCCCCEEEEeCCc--cccCHHHHHHHhhhhhhheecceEEeecccccccc
Confidence 488888773 333222 333333332 3566889888731 222333333332200 0013333333322222
Q ss_pred ---HHH-HHHHHHHcCCCEEEEEeCCCCC--ChhhHHH
Q 023346 145 ---GEA-IRKGMLHSRGELLLMLDADGAT--KVTDLEK 176 (283)
Q Consensus 145 ---~~a-~n~g~~~a~~d~i~~~D~D~~~--~~~~l~~ 176 (283)
+.. --.|+-.++-+=|+++|+|+.+ +|+.|-+
T Consensus 75 ~~~~~~~K~lA~l~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 75 SKKGFQNKWLALLFSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred ccCCchhhhhhhhhCCcceEEEEcCCcccccCHHHHhc
Confidence 222 1124445778889999999998 4554433
No 174
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=84.27 E-value=21 Score=28.97 Aligned_cols=92 Identities=10% Similarity=0.235 Sum_probs=56.3
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHHcC
Q 023346 78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLHSR 156 (283)
Q Consensus 78 ~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~g~~~a~ 156 (283)
.+.+..+++.+++ ...--+|+|.-| ++...++++++ . +.++..+ ...........++.+..
T Consensus 24 kpLi~~~i~~a~~---------s~~~d~IvVaTd--~~~i~~~~~~~----g---~~v~~~~~~~~~~~~r~~~~~~~~~ 85 (217)
T PF02348_consen 24 KPLIEYVIERAKQ---------SKLIDEIVVATD--DEEIDDIAEEY----G---AKVIFRRGSLADDTDRFIEAIKHFL 85 (217)
T ss_dssp EEHHHHHHHHHHH---------TTTTSEEEEEES--SHHHHHHHHHT----T---SEEEE--TTSSSHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHh---------CCCCCeEEEeCC--CHHHHHHHHHc----C---CeeEEcChhhcCCcccHHHHHHHhh
Confidence 4455556666554 233346776543 23334444444 2 3333333 33445555567777776
Q ss_pred CC---EEEEEeCCCCC-ChhhHHHHHHHHHHcCCc
Q 023346 157 GE---LLLMLDADGAT-KVTDLEKLESQIHAVGRK 187 (283)
Q Consensus 157 ~d---~i~~~D~D~~~-~~~~l~~~~~~~~~~~~~ 187 (283)
.+ +++.+.+|+.+ +|..+.++++.+.+....
T Consensus 86 ~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 86 ADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp CSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred hhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 66 99999999877 899999999999988665
No 175
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=84.17 E-value=1.3 Score=38.74 Aligned_cols=43 Identities=16% Similarity=-0.008 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 142 HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 142 ~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
.--..-+|.|+..+++++++++|.|..+.++.-+.+.+.+...
T Consensus 113 YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~ 155 (317)
T PF13896_consen 113 YPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRN 155 (317)
T ss_pred CChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhh
Confidence 3467889999999999999999999999999888877766554
No 176
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=84.05 E-value=15 Score=30.82 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 140 ~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
+..|-+.|+..+.+....+.++++++|.... ..+.++++.+.+...
T Consensus 101 ~~~gt~~al~~~~~~i~~e~flv~~gD~i~~-~dl~~~~~~h~~~~~ 146 (254)
T TIGR02623 101 ESTQTGGRLKRVREYLDDEAFCFTYGDGVAD-IDIKALIAFHRKHGK 146 (254)
T ss_pred CcCCcHHHHHHHHHhcCCCeEEEEeCCeEec-CCHHHHHHHHHHcCC
Confidence 3467788888888877667777999998764 456677776655433
No 177
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=83.63 E-value=15 Score=30.65 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=61.9
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHH
Q 023346 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLH 154 (283)
Q Consensus 75 ~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~ 154 (283)
++....++.+|+.++. ...--||||+-....+...+.+.+ .... .++.++.. ..........|++.
T Consensus 29 l~g~pll~~tl~~f~~---------~~~i~~Ivvv~~~~~~~~~~~~~~-~~~~--~~v~~v~G--G~~R~~SV~~gL~~ 94 (230)
T COG1211 29 LGGRPLLEHTLEAFLE---------SPAIDEIVVVVSPEDDPYFEKLPK-LSAD--KRVEVVKG--GATRQESVYNGLQA 94 (230)
T ss_pred ECCEEehHHHHHHHHh---------CcCCCeEEEEEChhhhHHHHHhhh-hccC--CeEEEecC--CccHHHHHHHHHHH
Confidence 4667778888888887 222458888877655554443322 1111 25666653 34567777888888
Q ss_pred cC---CCEEEEEeCCCCC-ChhhHHHHHHHHH
Q 023346 155 SR---GELLLMLDADGAT-KVTDLEKLESQIH 182 (283)
Q Consensus 155 a~---~d~i~~~D~D~~~-~~~~l~~~~~~~~ 182 (283)
.. .+||++.|+==.+ +++.+++++....
T Consensus 95 ~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~ 126 (230)
T COG1211 95 LSKYDSDWVLVHDAARPFLTPKLIKRLIELAD 126 (230)
T ss_pred hhccCCCEEEEeccccCCCCHHHHHHHHHhhc
Confidence 76 8999999987444 8899999994443
No 178
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=83.26 E-value=9.6 Score=31.74 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=51.8
Q ss_pred EEEEEeecC-CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC---CCC
Q 023346 68 ISLIIPAFN-EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---NHG 143 (283)
Q Consensus 68 vsviip~~n-e~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~---~~g 143 (283)
|.-+|-+|+ ..+. ++.+++.++ .....=+|.||-.+++...+.++++....+ +++++.... .+|
T Consensus 1 iAylil~h~~~~~~----~~~l~~~l~------~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~--nv~~v~~r~~v~WG~ 68 (244)
T PF02485_consen 1 IAYLILAHKNDPEQ----LERLLRLLY------HPDNDFYIHIDKKSPDYFYEEIKKLISCFP--NVHFVPKRVDVRWGG 68 (244)
T ss_dssp EEEEEEESS--HHH----HHHHHHHH--------TTSEEEEEE-TTS-HHHHHHHHHHHCT-T--TEEE-SS-----TTS
T ss_pred CEEEEEecCCCHHH----HHHHHHHhc------CCCCEEEEEEcCCCChHHHHHHHHhcccCC--ceeecccccccccCC
Confidence 356777876 4433 344444333 122344566777777777777777666666 888887432 234
Q ss_pred HH--H----HHHHHHH-HcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 144 KG--E----AIRKGML-HSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 144 k~--~----a~n~g~~-~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
.+ . .+..+++ ..+.++++++-+++.+-.. .+++.+.|+.+
T Consensus 69 ~S~v~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s-~~~i~~~l~~~ 115 (244)
T PF02485_consen 69 FSLVEATLNLLREALKRDGDWDYFILLSGQDYPLKS-NEEIHEFLESN 115 (244)
T ss_dssp HHHHHHHHHHHHHHHHH-S---EEEEEETTEEESS--HHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEcccccccccc-hHHHHHHHHhc
Confidence 22 2 3344455 2467898888888776321 23344555555
No 179
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=81.39 E-value=13 Score=31.46 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=46.6
Q ss_pred ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc--CCCEEEEEeCCCC-CChhhHHHHHH
Q 023346 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGA-TKVTDLEKLES 179 (283)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a--~~d~i~~~D~D~~-~~~~~l~~~~~ 179 (283)
--+|+||..... .+.++.....++ ..+.++ ....+.....-.|++.. ..++|++.|++-. +.++.+.++++
T Consensus 68 i~~IvVV~~~~~---~~~~~~~~~~~~-~~i~~v--~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~ 141 (252)
T PLN02728 68 VKEIVVVCDPSY---RDVFEEAVENID-VPLKFA--LPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLK 141 (252)
T ss_pred CCeEEEEeCHHH---HHHHHHHHHhcC-CceEEc--CCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHH
Confidence 346777754321 223333323332 134433 22344567777788875 3578999998654 48999999999
Q ss_pred HHHHcCC
Q 023346 180 QIHAVGR 186 (283)
Q Consensus 180 ~~~~~~~ 186 (283)
....+..
T Consensus 142 ~~~~~ga 148 (252)
T PLN02728 142 DAAVHGA 148 (252)
T ss_pred HHhhCCe
Confidence 8876543
No 180
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=80.95 E-value=5.8 Score=40.01 Aligned_cols=55 Identities=9% Similarity=-0.015 Sum_probs=41.0
Q ss_pred CCceEEEEEeecCC---C-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHH
Q 023346 64 AEKYISLIIPAFNE---E-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (283)
Q Consensus 64 ~~p~vsviip~~ne---~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (283)
..|.|.|.|++-+. + -....++-|+++ .+||..++-+.|.|||.+.-|.+.+.+.
T Consensus 285 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKlscYvSDDGgS~LTf~AL~EA 343 (1044)
T PLN02915 285 RLAPVDVFVSTVDPLKEPPIITANTVLSILA------VDYPVDKVSCYVSDDGASMLLFDTLSET 343 (1044)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHh------hcccccceeEEEecCCchHhHHHHHHHH
Confidence 58889999998654 2 233445566665 5678889999999999999988766543
No 181
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=80.48 E-value=26 Score=27.47 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHH----HHcCCCEEEEEeCCCCCChhhHHHHHHHH
Q 023346 140 RNHGKGEAIRKGM----LHSRGELLLMLDADGATKVTDLEKLESQI 181 (283)
Q Consensus 140 ~~~gk~~a~n~g~----~~a~~d~i~~~D~D~~~~~~~l~~~~~~~ 181 (283)
.|.||-.....-+ +..+-++++++|+-+.+.++.|-++.++|
T Consensus 118 ~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 118 KNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred ccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 4666655444433 44678999999999999999999988764
No 182
>PRK10122 GalU regulator GalF; Provisional
Probab=80.15 E-value=33 Score=29.73 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=39.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC-CCEEEEEeCCCCCChh-------hHHHHHHHHHHcCC
Q 023346 132 NVRIILLGRNHGKGEAIRKGMLHSR-GELLLMLDADGATKVT-------DLEKLESQIHAVGR 186 (283)
Q Consensus 132 ~~~~~~~~~~~gk~~a~n~g~~~a~-~d~i~~~D~D~~~~~~-------~l~~~~~~~~~~~~ 186 (283)
++.++..++..|.+.|+-.+..... .+++++. +|..++++ .+.++++.+.+...
T Consensus 98 ~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~~~~ 159 (297)
T PRK10122 98 TIMNVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred eEEEeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHHhCC
Confidence 4667777777899999988888764 4666555 88877653 58888887765543
No 183
>PLN02189 cellulose synthase
Probab=79.87 E-value=5.8 Score=39.97 Aligned_cols=55 Identities=11% Similarity=0.028 Sum_probs=41.0
Q ss_pred CCceEEEEEeecCC---CC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHH
Q 023346 64 AEKYISLIIPAFNE---EH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (283)
Q Consensus 64 ~~p~vsviip~~ne---~~-~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (283)
..|.|.|.|++-+. .+ ....++-|+++ .+||..++-+.|.|||.+.-|.+.+.+.
T Consensus 329 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKlscYvSDDGgS~LTf~AL~EA 387 (1040)
T PLN02189 329 MLSPVDIFVSTVDPLKEPPLVTANTVLSILA------MDYPVDKISCYVSDDGASMLTFEALSET 387 (1040)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHh------hcccccceeEEEecCCchHHHHHHHHHH
Confidence 47889999998654 22 23445556665 4678889999999999999998776553
No 184
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=79.56 E-value=23 Score=28.83 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=55.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC---CCcEEEEEcCCCCCHHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT---VDNVRIILLGRNHGKGEA 147 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~~~~~~~~~~~gk~~a 147 (283)
++|.-|. +.|...|+++.+ ..--+|+|+-....+...+.+.+...... ...+.++..++..|.+.|
T Consensus 25 llpi~g~-piI~~~l~~l~~----------~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~a 93 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLAL----------NGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDA 93 (217)
T ss_pred eeEECCE-ehHHHHHHHHHH----------CCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEEEEeCCCcCccchH
Confidence 5666676 577777777766 23457777766444434444433211110 013666666555565555
Q ss_pred HHHHHH--HcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 148 IRKGML--HSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 148 ~n~g~~--~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
+..... ... +.++++.+|..... .+.++++.+.+.
T Consensus 94 l~~~~~~~~~~-~~flv~~gD~i~~~-dl~~~l~~h~~~ 130 (217)
T cd04197 94 LRDLDAKGLIR-GDFILVSGDVVSNI-DLKEILEEHKER 130 (217)
T ss_pred HHHHhhccccC-CCEEEEeCCeeecc-CHHHHHHHHHHh
Confidence 433221 123 44668999987754 477777777653
No 185
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=78.99 E-value=5.4 Score=37.00 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=72.3
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcch-HHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDFVRKYTVDNVRIILLGRNH 142 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (283)
.....|.++-+||+-+.|...+..... -..--+|+||=++-..+. .+.++.... ..+++..+.+
T Consensus 441 ~~qgFTlim~TYdR~d~L~k~v~~ys~---------vPsL~kIlVVWNnq~k~PP~es~~~~~~----VPlr~r~qke-- 505 (691)
T KOG1022|consen 441 HSQGFTLIMLTYDRVDLLKKLVKHYSR---------VPSLKKILVVWNNQGKNPPPESLEPDIA----VPLRFRQQKE-- 505 (691)
T ss_pred cccceeeeeehHHHHHHHHHHHHHHhh---------CCCcceEEEEecCCCCCCChhhccccCC----ccEEEEehhh--
Confidence 445599999999976666555555443 122356777766422221 222221111 1455554432
Q ss_pred CHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (283)
Q Consensus 143 gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 194 (283)
.+-.++=.-....+.+-|+-+|+|..++.+.|..-.+.-++.|+..+.+.-.
T Consensus 506 NsLnNRF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVGF~pR 557 (691)
T KOG1022|consen 506 NSLNNRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVGFVPR 557 (691)
T ss_pred hhhhcccccCcccccceeEEecCceeeecchhHHHHHHHHhCccceeccCcc
Confidence 2333333344557899999999999999999999999999999986654433
No 186
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=78.06 E-value=21 Score=29.80 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=57.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC--CCHH--------
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN--HGKG-------- 145 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~--~gk~-------- 145 (283)
|-...+.-++.|+++ ....+++++|+.|+-++...+.++++...+. ..++++..+.. ..+.
T Consensus 11 ~y~~~~~v~i~Sl~~--------~~~~~~~~~il~~~is~~~~~~L~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (246)
T cd00505 11 EYLRGAIVLMKSVLR--------HRTKPLRFHVLTNPLSDTFKAALDNLRKLYN-FNYELIPVDILDSVDSEHLKRPIKI 81 (246)
T ss_pred chhHHHHHHHHHHHH--------hCCCCeEEEEEEccccHHHHHHHHHHHhccC-ceEEEEeccccCcchhhhhcCcccc
Confidence 446667777777776 2333799999999877777888877655432 34666654311 1110
Q ss_pred --HHHHHHHHHc-CCCEEEEEeCCCCCChhhHHHHHH
Q 023346 146 --EAIRKGMLHS-RGELLLMLDADGATKVTDLEKLES 179 (283)
Q Consensus 146 --~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~~~~ 179 (283)
..+=...+.. ..+=|+++|+|..+. +.++++.+
T Consensus 82 ~~y~RL~i~~llp~~~kvlYLD~D~iv~-~di~~L~~ 117 (246)
T cd00505 82 VTLTKLHLPNLVPDYDKILYVDADILVL-TDIDELWD 117 (246)
T ss_pred ceeHHHHHHHHhhccCeEEEEcCCeeec-cCHHHHhh
Confidence 1111121222 378899999999887 45666654
No 187
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=77.37 E-value=28 Score=32.39 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=53.4
Q ss_pred EeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHH
Q 023346 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKG 151 (283)
Q Consensus 72 ip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g 151 (283)
+|..+....|..+++.+.. . ..-+++||-+. .-...+++....+.....+++..+...|.+.|.-.+
T Consensus 27 l~l~g~~~ll~~tl~~l~~--------~--~~~~iviv~~~---~~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~a 93 (468)
T TIGR01479 27 LALVGDLTMLQQTLKRLAG--------L--PCSSPLVICNE---EHRFIVAEQLREIGKLASNIILEPVGRNTAPAIALA 93 (468)
T ss_pred eEcCCCCcHHHHHHHHHhc--------C--CCcCcEEecCH---HHHHHHHHHHHHcCCCcceEEecccccCchHHHHHH
Confidence 4444656667777777654 1 23366666432 112223333333321134566666666666655544
Q ss_pred HHHc-----CCCEEEEEeCCCCCC-hhhHHHHHHHH
Q 023346 152 MLHS-----RGELLLMLDADGATK-VTDLEKLESQI 181 (283)
Q Consensus 152 ~~~a-----~~d~i~~~D~D~~~~-~~~l~~~~~~~ 181 (283)
.... ..++++++-+|..+. +..+.++++..
T Consensus 94 a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 94 ALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred HHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 4333 246899999997764 46677777754
No 188
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=77.03 E-value=4 Score=41.05 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCCC-----HHHHHHHHHHHc----CCCEEEEEeCCCCC-ChhhHHHHHHHHH
Q 023346 131 DNVRIILLGRNHG-----KGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIH 182 (283)
Q Consensus 131 ~~~~~~~~~~~~g-----k~~a~n~g~~~a----~~d~i~~~D~D~~~-~~~~l~~~~~~~~ 182 (283)
+.+.++.++++.| |++|+|.-++.+ .++||+-+|.|... .|..+++.+=.|-
T Consensus 454 P~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~l 515 (1044)
T PLN02915 454 PRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLM 515 (1044)
T ss_pred ceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeee
Confidence 3888888887655 999999999885 79999999999999 6777776655443
No 189
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=76.47 E-value=45 Score=28.99 Aligned_cols=105 Identities=11% Similarity=0.148 Sum_probs=60.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHH---------------HH----c-CC
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV---------------RK----Y-TV 130 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~---------------~~----~-~~ 130 (283)
++|..+. +.|..+|+++.+ ..--+|+|+-.-..+...+.+.... .+ . +.
T Consensus 33 l~pv~g~-pii~~~l~~l~~----------~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~ 101 (302)
T PRK13389 33 MLPLVDK-PLIQYVVNECIA----------AGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPH 101 (302)
T ss_pred eeEECCE-EHHHHHHHHHHH----------CCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccC
Confidence 5566555 777777777766 2244677766544333333332100 00 0 10
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCC-------hhhHHHHHHHHHHcCC
Q 023346 131 DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK-------VTDLEKLESQIHAVGR 186 (283)
Q Consensus 131 ~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~-------~~~l~~~~~~~~~~~~ 186 (283)
..+.........|.+.|+-.+......+-++++.+|..++ ...+.++++.+.+...
T Consensus 102 ~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~ 164 (302)
T PRK13389 102 VTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH 164 (302)
T ss_pred ceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCC
Confidence 1334444455678888888777765445466677888774 3678888887765543
No 190
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=76.39 E-value=41 Score=27.78 Aligned_cols=92 Identities=14% Similarity=0.176 Sum_probs=58.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
+..+.+..+|+.+.+ ...--+|+||-.. +-.+.++++..+ . .++++... .....+...|++..
T Consensus 26 ~Gkpvl~~tl~~f~~---------~~~i~~Ivvv~~~---~~~~~~~~~~~~-~--~v~iv~GG--~tR~~SV~ngL~~l 88 (221)
T PF01128_consen 26 GGKPVLEYTLEAFLA---------SPEIDEIVVVVPP---EDIDYVEELLSK-K--KVKIVEGG--ATRQESVYNGLKAL 88 (221)
T ss_dssp TTEEHHHHHHHHHHT---------TTTESEEEEEESG---GGHHHHHHHHHH-T--TEEEEE----SSHHHHHHHHHHCH
T ss_pred CCeEeHHHHHHHHhc---------CCCCCeEEEEecc---hhHHHHHHhhcC-C--CEEEecCC--hhHHHHHHHHHHHH
Confidence 456677777777765 3335577777543 233444444444 3 68887643 34556666777764
Q ss_pred C--CCEEEEEeCCCC-CChhhHHHHHHHHHHc
Q 023346 156 R--GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (283)
Q Consensus 156 ~--~d~i~~~D~D~~-~~~~~l~~~~~~~~~~ 184 (283)
. .|+|++-|+=-. ++++.+.++++.+..+
T Consensus 89 ~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~ 120 (221)
T PF01128_consen 89 AEDCDIVLIHDAARPFVSPELIDRVIEAAREG 120 (221)
T ss_dssp HCTSSEEEEEETTSTT--HHHHHHHHHHHHHT
T ss_pred HcCCCEEEEEccccCCCCHHHHHHHHHHHHhh
Confidence 3 479999998754 4899999999999873
No 191
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=74.98 E-value=3.3 Score=37.11 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=65.5
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCC--CcEEEEEcCC---
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--DNVRIILLGR--- 140 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~~~~~~~~~--- 140 (283)
|.|-+.+-++|-...++-.+..+-+ .+++....-|.+-.|.+.|.+.++++++.+..+. ..+.+-...+
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~------~Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s 76 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEE------GDYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKS 76 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhc------cCCcccccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccc
Confidence 3455556666666555444443222 3456667788999999999999999998876542 2344332221
Q ss_pred ---CCC-----HH------HHHHHHHHHcC---CCEEEEEeCCCCC-ChhhHHHHHHH
Q 023346 141 ---NHG-----KG------EAIRKGMLHSR---GELLLMLDADGAT-KVTDLEKLESQ 180 (283)
Q Consensus 141 ---~~g-----k~------~a~n~g~~~a~---~d~i~~~D~D~~~-~~~~l~~~~~~ 180 (283)
..| ++ .-...++..++ .||++|.|.|+.+ .++.|.-+.+.
T Consensus 77 ~~d~~~pk~W~~sr~q~lm~lKeea~~~~r~~~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 77 YPDEHGPKHWPDSRFQHLMSLKEEALNWARSGWADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred cCcccCCccCchHHHHHHHHHHHHHHHHHHhhhcceeEEeehhheeeCCchHhHHHhc
Confidence 111 11 11122333333 6999999999999 56667665543
No 192
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=74.44 E-value=40 Score=28.36 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=61.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--C---C--CCH--HH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--R---N--HGK--GE 146 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~---~--~gk--~~ 146 (283)
+....+..++.|++. ....++++.|++|+-+++..+.++++..++. ..+.++... . . ... ..
T Consensus 11 ~y~~~~~v~l~Sll~--------nn~~~~~fyil~~~is~e~~~~l~~~~~~~~-~~i~~i~i~~~~~~~~~~~~~~~~~ 81 (248)
T cd06432 11 LYERFLRIMMLSVMK--------NTKSPVKFWFIKNFLSPQFKEFLPEMAKEYG-FEYELVTYKWPRWLHKQTEKQRIIW 81 (248)
T ss_pred HHHHHHHHHHHHHHH--------cCCCCEEEEEEeCCCCHHHHHHHHHHHHHhC-CceEEEEecChhhhhcccccchhHH
Confidence 345667778888877 3345799999999999999999998887765 245555442 1 0 111 11
Q ss_pred HHH-HHHH-Hc--CCCEEEEEeCCCCCChhhHHHHHHH
Q 023346 147 AIR-KGML-HS--RGELLLMLDADGATKVTDLEKLESQ 180 (283)
Q Consensus 147 a~n-~g~~-~a--~~d~i~~~D~D~~~~~~~l~~~~~~ 180 (283)
+.- ..+. .- .-+=++.+|+|..+. +.|+++.+.
T Consensus 82 ~y~rL~~~~lLP~~vdkvLYLD~Dilv~-~dL~eL~~~ 118 (248)
T cd06432 82 GYKILFLDVLFPLNVDKVIFVDADQIVR-TDLKELMDM 118 (248)
T ss_pred HHHHHHHHHhhhhccCEEEEEcCCceec-ccHHHHHhc
Confidence 111 1122 11 358999999999886 667776643
No 193
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=74.30 E-value=29 Score=28.88 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=55.6
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC-----------CC-HH
Q 023346 78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN-----------HG-KG 145 (283)
Q Consensus 78 ~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~-----------~g-k~ 145 (283)
...+..++.|+++. .+..++.++|+.++-++...+.++++..... ..++++..+.. .. ..
T Consensus 12 ~~~~~~~l~Sl~~~-------~~~~~~~~~il~~~is~~~~~~L~~~~~~~~-~~i~~~~i~~~~~~~~~~~~~~~~~~~ 83 (248)
T cd04194 12 APYLAVTIKSILAN-------NSKRDYDFYILNDDISEENKKKLKELLKKYN-SSIEFIKIDNDDFKFFPATTDHISYAT 83 (248)
T ss_pred HHHHHHHHHHHHhc-------CCCCceEEEEEeCCCCHHHHHHHHHHHHhcC-CeEEEEEcCHHHHhcCCcccccccHHH
Confidence 34455566666651 1224789999999888888988888866532 35666654321 00 11
Q ss_pred HHHHHHHHHc-CCCEEEEEeCCCCCChhhHHHHHH
Q 023346 146 EAIRKGMLHS-RGELLLMLDADGATKVTDLEKLES 179 (283)
Q Consensus 146 ~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~~~~ 179 (283)
.++=...+.. ..+-++++|+|..+.. .+..+.+
T Consensus 84 y~rl~l~~ll~~~~rvlylD~D~lv~~-di~~L~~ 117 (248)
T cd04194 84 YYRLLIPDLLPDYDKVLYLDADIIVLG-DLSELFD 117 (248)
T ss_pred HHHHHHHHHhcccCEEEEEeCCEEecC-CHHHHhc
Confidence 1122222222 3788999999998865 3444443
No 194
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=73.88 E-value=27 Score=25.82 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=46.8
Q ss_pred CCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc--CCCEEEEEeCCCCC-ChhhHHHH
Q 023346 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGAT-KVTDLEKL 177 (283)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a--~~d~i~~~D~D~~~-~~~~l~~~ 177 (283)
....+++|.-++..+.....-. ... ..+.+.... ..+.+.-++.+++.+ ..+-++++-+|+.- +++.|++.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~---~~~--~~~~~~~Q~-g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A 81 (122)
T PF09837_consen 8 ADGADVVLAYTPDGDHAAFRQL---WLP--SGFSFFPQQ-GGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQA 81 (122)
T ss_dssp TSSSEEEEEE----TTHHHHHH---HH---TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHH
T ss_pred CCCcCEEEEEcCCccHHHHhcc---ccC--CCCEEeecC-CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHH
Confidence 4467888887776665443211 111 256777764 566787788888776 56899999999876 88889999
Q ss_pred HHHHHHc
Q 023346 178 ESQIHAV 184 (283)
Q Consensus 178 ~~~~~~~ 184 (283)
.+.++.+
T Consensus 82 ~~~L~~~ 88 (122)
T PF09837_consen 82 FEALQRH 88 (122)
T ss_dssp HHHTTT-
T ss_pred HHHhccC
Confidence 8888665
No 195
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=73.28 E-value=34 Score=30.47 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=40.0
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHH
Q 023346 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (283)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (283)
.+.+.|||=+||+.++++.+|+|+.+. ..-...-+|+.-|.-+++..++++.+
T Consensus 30 ~~~~vivvqVH~r~~yl~~li~sL~~~-------~~I~~~llifSHd~~~~ein~~v~~I 82 (356)
T PF05060_consen 30 NDSIVIVVQVHNRPEYLKLLIDSLSQA-------RGIEEALLIFSHDFYSEEINDLVQSI 82 (356)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHh-------hCccceEEEEeccCChHHHHHHHHhC
Confidence 356899999999999999999998873 22346677777777777777776643
No 196
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=69.93 E-value=29 Score=31.14 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=40.2
Q ss_pred cEEEEEcCC-CCCHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHH
Q 023346 132 NVRIILLGR-NHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQI 181 (283)
Q Consensus 132 ~~~~~~~~~-~~gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~ 181 (283)
+++++..+. ..|...++..|++++..+.++++=+|.-+ .++.+++++...
T Consensus 233 ~v~~i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 233 GIPLITDSYLDIGPLGGLLSAQRHHPDAAWLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred CCcEEeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence 466776553 46878888889988888889999999877 899999998864
No 197
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=69.19 E-value=34 Score=31.52 Aligned_cols=103 Identities=9% Similarity=0.098 Sum_probs=67.2
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC---CCC
Q 023346 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---NHG 143 (283)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~---~~g 143 (283)
.+..+..+|...+.+++.|+++.. +.+.=.|.||..|++.-...++++....+ ++.+..... ..|
T Consensus 104 ~~a~~~~v~kd~~~verll~aiYh----------PqN~ycihvD~~s~~~fk~~~~~L~~cf~--NV~v~~k~~~v~~~G 171 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIYH----------PQNVYCIHVDAKSPPEFRVAMQQLASCFP--NVIVLPKRESVTYGG 171 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHhC----------CcCcceEEECCCCCHHHHHHHHHHHhcCC--ceEEeccccceecCC
Confidence 477788888887766665555543 33556788999999999999999998888 999987432 234
Q ss_pred HH--HHHHHHHHH---c--CCCEEEEEeCCCCC--ChhhHHHHHHHH
Q 023346 144 KG--EAIRKGMLH---S--RGELLLMLDADGAT--KVTDLEKLESQI 181 (283)
Q Consensus 144 k~--~a~n~g~~~---a--~~d~i~~~D~D~~~--~~~~l~~~~~~~ 181 (283)
.+ .|--.+++. . ..+|++.+=+.+.+ ..+.|.++.+.+
T Consensus 172 ~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L 218 (439)
T KOG0799|consen 172 HSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL 218 (439)
T ss_pred chhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc
Confidence 22 222223322 1 26777776555544 455566666666
No 198
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=68.73 E-value=70 Score=28.25 Aligned_cols=105 Identities=17% Similarity=0.073 Sum_probs=66.2
Q ss_pred ceEEEEEeec-CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC----
Q 023346 66 KYISLIIPAF-NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---- 140 (283)
Q Consensus 66 p~vsviip~~-ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~---- 140 (283)
..+.|+..+= |=...+.-+|.|++.. .+...+.+.|++|+-+++..+.++++...++ ..+.++..+.
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~n-------n~~~~~~f~Il~~~is~e~~~~l~~l~~~~~-~~i~~~~id~~~~~ 95 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLN-------NPDKSLVFHVFTDYISDADKQRFSALAKQYN-TRINIYLINCERLK 95 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHh-------CCCCCEEEEEEeCCCCHHHHHHHHHHHHhcC-CeEEEEEeCHHHHh
Confidence 3477777663 2356677777787752 2334689999999999998888888877764 2566554321
Q ss_pred ------CCCHH-HHHHHHHHHc--CCCEEEEEeCCCCCChhhHHHHHH
Q 023346 141 ------NHGKG-EAIRKGMLHS--RGELLLMLDADGATKVTDLEKLES 179 (283)
Q Consensus 141 ------~~gk~-~a~n~g~~~a--~~d~i~~~D~D~~~~~~~l~~~~~ 179 (283)
+...+ ..+-..-+.- .-|-++.+|+|.++.. .|.++.+
T Consensus 96 ~~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~-dl~~L~~ 142 (334)
T PRK15171 96 SLPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKG-SIKELID 142 (334)
T ss_pred CCcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecC-CHHHHHh
Confidence 11221 2222222322 4789999999998865 4555554
No 199
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=66.87 E-value=60 Score=25.41 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=37.9
Q ss_pred cEEEEEcC-CCCCHHHHHHHHHHHc---CCCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346 132 NVRIILLG-RNHGKGEAIRKGMLHS---RGELLLMLDADGAT-KVTDLEKLESQIHAV 184 (283)
Q Consensus 132 ~~~~~~~~-~~~gk~~a~n~g~~~a---~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~ 184 (283)
.++++... ...|...++-.|++.+ +.++++++=+|.-. +++.++++++.....
T Consensus 46 ~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 46 PAPVLRDELRGLGPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CCCEeccCCCCCCcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 34555433 2356677777677654 57999999999887 899999998876543
No 200
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=63.73 E-value=87 Score=27.31 Aligned_cols=108 Identities=13% Similarity=0.014 Sum_probs=58.7
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCC-CCcchHHHHHHHHHHcCC-C--cEEEEEcCCCC-
Q 023346 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG-SSDGTKRVAFDFVRKYTV-D--NVRIILLGRNH- 142 (283)
Q Consensus 68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~-s~d~t~~~~~~~~~~~~~-~--~~~~~~~~~~~- 142 (283)
++||....+ .+.+..+|.|++. ....++++.|+.|. .++...+.++++...+.. . .+..+..|...
T Consensus 3 ~~vv~~g~~-~~~~~~~lkSil~--------~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~ 73 (304)
T cd06430 3 LAVVACGER-LEETLTMLKSAIV--------FSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNA 73 (304)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHH--------hCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccch
Confidence 556665555 3444445555543 34558888888886 667777778888554321 1 23333333211
Q ss_pred -C-----H-HHHHHHHH-HHc-CCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 143 -G-----K-GEAIRKGM-LHS-RGELLLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 143 -g-----k-~~a~n~g~-~~a-~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
+ | +.....-+ +.- .-|-++.+|+|..+. +-|+++.+.+.+-.
T Consensus 74 ~~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~-~dI~eL~~~~~df~ 124 (304)
T cd06430 74 AEWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFL-RPVEEIWSFLKKFN 124 (304)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhhceEEEeccceeec-CCHHHHHHHHhhcC
Confidence 1 1 11111111 111 358999999999885 34666666554433
No 201
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=63.58 E-value=82 Score=28.84 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=53.9
Q ss_pred ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc-C-CC-EEEEEeCCCCC-ChhhHHHHH
Q 023346 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS-R-GE-LLLMLDADGAT-KVTDLEKLE 178 (283)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a-~-~d-~i~~~D~D~~~-~~~~l~~~~ 178 (283)
+-++++|-..-.+...+. ..+.. .+.++...+..|-+.|.-.+..+. . .+ .++++-+|..+ .++.|++++
T Consensus 45 ~~~i~vVvGh~ae~V~~~----~~~~~--~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~ 118 (460)
T COG1207 45 PDDIVVVVGHGAEQVREA----LAERD--DVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELL 118 (460)
T ss_pred cceEEEEEcCCHHHHHHH----hcccc--CceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHH
Confidence 345555554443333332 22222 488888888999999999999876 3 33 57888888776 899999888
Q ss_pred HHHHHcCCcc
Q 023346 179 SQIHAVGRKE 188 (283)
Q Consensus 179 ~~~~~~~~~~ 188 (283)
+.........
T Consensus 119 ~~~~~~~~~~ 128 (460)
T COG1207 119 AAHPAHGAAA 128 (460)
T ss_pred HhhhhcCCce
Confidence 8776554443
No 202
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=63.55 E-value=77 Score=25.48 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=54.7
Q ss_pred ecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC----------cchHHHHHHHH----HHcCCCcEEEEEcC
Q 023346 74 AFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS----------DGTKRVAFDFV----RKYTVDNVRIILLG 139 (283)
Q Consensus 74 ~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~----------d~t~~~~~~~~----~~~~~~~~~~~~~~ 139 (283)
.-+.+.+++.+|+.+-+.--....+| ..+++|++-++... |+..+..+++. .-.| .++|+..+
T Consensus 78 ~I~dEtYlp~LL~kLW~kyGr~~V~Q-P~Rf~I~i~~~~~~~~~i~dlvV~Dp~~~l~~~v~da~~RI~P-EGFRVr~~- 154 (188)
T PF09886_consen 78 KIEDETYLPDLLKKLWEKYGRENVDQ-PDRFEIIIDSDIDEAKDIEDLVVYDPSEDLKKKVYDAMFRIAP-EGFRVRRH- 154 (188)
T ss_pred EEcccchHHHHHHHHHHHhCccccCC-CCceEEEecCCcccccchhhcEEECcHHHHHHHHHHHHHHhCC-CccEEeec-
Confidence 34677888999888854222122223 44788887655543 22222222111 1111 12233221
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 140 ~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
...++.++|+-++..+.++|++++.+.+...
T Consensus 155 --------------~~~~~~f~~vASE~~i~~ewi~~a~e~~~el 185 (188)
T PF09886_consen 155 --------------YYEGNSFAFVASEETIKDEWIEEAKEMIEEL 185 (188)
T ss_pred --------------cccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2457899999999999999998887777653
No 203
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=63.12 E-value=32 Score=30.47 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=57.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCC-----CcEEEEE------c-
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV-----DNVRIIL------L- 138 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-----~~~~~~~------~- 138 (283)
++|..+..+.|...|+++.+ ..--||+|+-.-..+...+.+.+ .+.. ..++++. .
T Consensus 23 llpv~g~~pli~~~l~~l~~----------~gi~~i~iv~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 89 (361)
T TIGR02091 23 AVPFGGKYRIIDFPLSNCIN----------SGIRRIGVLTQYKSHSLNRHIQR---GWDFDGFIDGFVTLLPAQQRESGT 89 (361)
T ss_pred cceecceeeEeeehhhhhhh----------cCCceEEEEeccChHHHHHHHHh---ccCccCccCCCEEEeCCcccCCCC
Confidence 34554543566666777665 22347777766444444444432 1110 1234321 1
Q ss_pred CCCCCHHHHHHHHHHHcC---CCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 139 GRNHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 139 ~~~~gk~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
+...|.+.++-.++.... .+.++++.+|...+.+ +.++++.+.+.+.
T Consensus 90 ~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~-l~~~l~~~~~~~~ 139 (361)
T TIGR02091 90 DWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMD-YEKMLDYHIESGA 139 (361)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCC-HHHHHHHHHHcCC
Confidence 112677888887777654 5788999999876554 6777776655443
No 204
>PLN02248 cellulose synthase-like protein
Probab=61.98 E-value=23 Score=36.22 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=41.6
Q ss_pred CCceEEEEEeecCCC----CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHH
Q 023346 64 AEKYISLIIPAFNEE----HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (283)
Q Consensus 64 ~~p~vsviip~~ne~----~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (283)
..|.|.|.|++-+.. -....++-|+++ .+||.+++-+.|.|||.+.-|.+.+.+.
T Consensus 365 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKLacYvSDDGgS~LTf~AL~EA 423 (1135)
T PLN02248 365 DLPGIDVFVSTADPEKEPPLVTANTILSILA------ADYPVEKLACYLSDDGGALLTFEAMAEA 423 (1135)
T ss_pred cCCcceeEeecCCCccCcchHHHHHHHHHhc------ccccccceeEEEecCCchHHHHHHHHHH
Confidence 589999999986542 233455556665 5688889999999999999998776653
No 205
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=61.88 E-value=51 Score=28.23 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=45.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCC--hhhHHHHHHHHHHcCCc
Q 023346 131 DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK--VTDLEKLESQIHAVGRK 187 (283)
Q Consensus 131 ~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~--~~~l~~~~~~~~~~~~~ 187 (283)
.++.+++.++..|.+.|.-.|=.....|-++++=+|+.+. +..+.+|++..++....
T Consensus 97 ~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s 155 (291)
T COG1210 97 VTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGS 155 (291)
T ss_pred ceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCc
Confidence 4788899998999999999988888887555555666554 68899999999876553
No 206
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=61.76 E-value=43 Score=27.25 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=53.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHH--HcCCCcEEEEEc--CCCCCHHH
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR--KYTVDNVRIILL--GRNHGKGE 146 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~--~~~~~~~~~~~~--~~~~gk~~ 146 (283)
++|.-|. +.|.-+|+.+.+ ..--+|+|+-....+...+.+.+-.. ......+.++.. ....|-+.
T Consensus 25 llpv~g~-pli~~~l~~l~~----------~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~ 93 (216)
T cd02507 25 LLPVANV-PLIDYTLEWLEK----------AGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDAL 93 (216)
T ss_pred cceECCE-EHHHHHHHHHHH----------CCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHH
Confidence 4566555 667777776665 22346777765444333333322110 001113333333 34678888
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHH
Q 023346 147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLES 179 (283)
Q Consensus 147 a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~ 179 (283)
++..+.....++ ++++.+|.....+ +..+++
T Consensus 94 ~l~~~~~~i~~d-flv~~gD~i~~~~-l~~~l~ 124 (216)
T cd02507 94 RLRDIRGLIRSD-FLLLSCDLVSNIP-LSELLE 124 (216)
T ss_pred HHHHHhhcCCCC-EEEEeCCEeecCC-HHHHHH
Confidence 888887777666 5679999877655 555554
No 207
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=56.39 E-value=8.7 Score=31.65 Aligned_cols=75 Identities=20% Similarity=0.046 Sum_probs=41.8
Q ss_pred CceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC--------------CC--HHHHHHHHHHH-cCCCEEEEEe
Q 023346 102 FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN--------------HG--KGEAIRKGMLH-SRGELLLMLD 164 (283)
Q Consensus 102 ~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~--------------~g--k~~a~n~g~~~-a~~d~i~~~D 164 (283)
..+.+++++|+.+++..+.+++...+.. .+..+..... .. ...++=...+. ...|-++++|
T Consensus 29 ~~~~i~i~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD 106 (250)
T PF01501_consen 29 SNLHIYIITDDISEEDFEKLRALAAEVI--EIEPIEFPDISMLEEFQFNSPSKRHFSPATFARLFIPDLLPDYDRILYLD 106 (250)
T ss_dssp SSEEEEEEESSS-HHHHHHHHHHSCCCC--TTECEEETSGGHHH--TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-
T ss_pred ccceEEEecCCCCHHHHHHHhhhccccc--ceeeeccchHHhhhhhhhcccccccccHHHHHHhhhHHHHhhcCeEEEEc
Confidence 5788999999888777777776655443 2222221110 11 11122223444 5779999999
Q ss_pred CCCCCChhhHHHHHH
Q 023346 165 ADGATKVTDLEKLES 179 (283)
Q Consensus 165 ~D~~~~~~~l~~~~~ 179 (283)
+|..+-. .+..+.+
T Consensus 107 ~D~lv~~-dl~~lf~ 120 (250)
T PF01501_consen 107 ADTLVLG-DLDELFD 120 (250)
T ss_dssp TTEEESS--SHHHHC
T ss_pred CCeeeec-Chhhhhc
Confidence 9999943 3444443
No 208
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=56.09 E-value=1.8 Score=29.43 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=13.8
Q ss_pred cccccc-cccCCCCCC--ccccccc
Q 023346 258 SEEVVP-QFFDEGFPS--CCYLDCW 279 (283)
Q Consensus 258 r~~~~~-ggFde~~~~--~eD~d~w 279 (283)
++.+.. |||||.|.. +||.||.
T Consensus 28 ~~~f~~vnGfde~f~gWG~ED~Dl~ 52 (78)
T PF02709_consen 28 REDFEKVNGFDERFWGWGGEDDDLY 52 (78)
T ss_dssp HHHHHHTTSS-SS-TSCSSHHHHHH
T ss_pred HHHHHHcCCCCccccccCccHHHHH
Confidence 444444 999999933 7998875
No 209
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=54.25 E-value=1.7e+02 Score=26.54 Aligned_cols=88 Identities=20% Similarity=0.147 Sum_probs=48.3
Q ss_pred EeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH-cCCCcEEEEEcCC--CCCHHHHH
Q 023346 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK-YTVDNVRIILLGR--NHGKGEAI 148 (283)
Q Consensus 72 ip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~~~~~~~~~--~~gk~~a~ 148 (283)
+|. ...+.|...++.+.+ . . -+++|+-.... +.++++..+ ++ +++++..+. ..|.+.++
T Consensus 25 lpi-~gkPli~~~i~~l~~--------~-~--~~i~Ivv~~~~----~~i~~~~~~~~~--~v~~~~~~~~~~~gt~~al 86 (430)
T PRK14359 25 HTI-CGKPMLFYILKEAFA--------I-S--DDVHVVLHHQK----ERIKEAVLEYFP--GVIFHTQDLENYPGTGGAL 86 (430)
T ss_pred CEE-CCccHHHHHHHHHHH--------c-C--CcEEEEECCCH----HHHHHHHHhcCC--ceEEEEecCccCCCcHHHH
Confidence 344 445666777776665 1 1 24444443211 222222222 23 577776542 25666666
Q ss_pred HHHHHHcCCCEEEEEeCCC-CCChhhHHHHHH
Q 023346 149 RKGMLHSRGELLLMLDADG-ATKVTDLEKLES 179 (283)
Q Consensus 149 n~g~~~a~~d~i~~~D~D~-~~~~~~l~~~~~ 179 (283)
... ....|.++++++|. ...++.++++.+
T Consensus 87 ~~~--~~~~d~vlv~~gD~p~~~~~~l~~l~~ 116 (430)
T PRK14359 87 MGI--EPKHERVLILNGDMPLVEKDELEKLLE 116 (430)
T ss_pred hhc--ccCCCeEEEEECCccCCCHHHHHHHHh
Confidence 542 23468999999998 457777777653
No 210
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=52.72 E-value=78 Score=28.72 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=59.0
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC--CCcEEEEEc-C--------
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILL-G-------- 139 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~~~-~-------- 139 (283)
++|.-|..+.|.-.|+++.+ ..--+|+|+-....+...+.+. ..+. .....++.. +
T Consensus 30 llPv~gk~plI~~~L~~l~~----------~Gi~~i~iv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (407)
T PRK00844 30 AVPFGGSYRLIDFVLSNLVN----------SGYLRIYVLTQYKSHSLDRHIS---QTWRLSGLLGNYITPVPAQQRLGKR 96 (407)
T ss_pred ceeeCCcceEhHHHHHHHHH----------CCCCEEEEEeccCHHHHHHHHH---hCcCccccCCCeEEECCcccCCCCC
Confidence 55666655667777777665 2345777776654444444443 1111 001222321 1
Q ss_pred CCCCHHHHHHHHHHHcC---CCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 140 RNHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 140 ~~~gk~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
...|.+.|+..+..... .++++++.+|.... ..+.++++...+...
T Consensus 97 ~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~-~dl~~l~~~h~~~~~ 145 (407)
T PRK00844 97 WYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYR-MDPRQMVDFHIESGA 145 (407)
T ss_pred cccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEc-CCHHHHHHHHHhcCC
Confidence 13678888887777653 36899999998654 456777776655443
No 211
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=52.18 E-value=1.2e+02 Score=24.11 Aligned_cols=82 Identities=17% Similarity=0.099 Sum_probs=46.8
Q ss_pred CCceEEEEEeCCCCcchHHHHHHHHHHcCCCc-EEEEEcCCCCCHHHHHHHHHHHc--CC-CEEEEEeCCCCCChhhHHH
Q 023346 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDN-VRIILLGRNHGKGEAIRKGMLHS--RG-ELLLMLDADGATKVTDLEK 176 (283)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~-~~~~~~~~~~gk~~a~n~g~~~a--~~-d~i~~~D~D~~~~~~~l~~ 176 (283)
..++|++=..||.+....+....+........ -+.+ .+...|=..+.-.+++.+ ++ ++++++-+|..+.+++.+.
T Consensus 27 ~~~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~l-t~gEiGC~lSH~~~w~~~v~~~~~~~lIlEDDv~~~~~f~~~ 105 (200)
T PF01755_consen 27 GINFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPL-TPGEIGCALSHIKAWQRIVDSGLEYALILEDDVIFDPDFKEF 105 (200)
T ss_pred CCceEEEEeecccccchHHHHHHhhhhhhhccccccC-CcceEeehhhHHHHHHHHHHcCCCeEEEEeccccccccHHHH
Confidence 55799998889887766444433322211000 1111 223455343434444432 34 9999999999999987666
Q ss_pred HHHHHHH
Q 023346 177 LESQIHA 183 (283)
Q Consensus 177 ~~~~~~~ 183 (283)
+......
T Consensus 106 l~~~~~~ 112 (200)
T PF01755_consen 106 LEEILSH 112 (200)
T ss_pred HHHHHhh
Confidence 5554444
No 212
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=51.69 E-value=1.3e+02 Score=27.43 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=59.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC------CCcEEEEE-------
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT------VDNVRIIL------- 137 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~------~~~~~~~~------- 137 (283)
++|.-+....|.-.|+++.+ ..--+|+|+-....+...+.+.+ .+. ...+.++.
T Consensus 40 llpv~gkp~lI~~~l~~l~~----------~Gi~~i~vv~~~~~~~i~~~~~~---~~~~~~~~~~~~i~i~~~~~~~~~ 106 (425)
T PRK00725 40 AVYFGGKFRIIDFALSNCIN----------SGIRRIGVLTQYKAHSLIRHIQR---GWSFFREELGEFVDLLPAQQRVDE 106 (425)
T ss_pred eEEECCEEEEhHHHHHHHHH----------CCCCeEEEEecCCHHHHHHHHHh---hhcccccCCCCeEEEeCCcccCCC
Confidence 56666655566677777665 22347777766544444443332 111 00122221
Q ss_pred cCCCCCHHHHHHHHHHHcC---CCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 138 LGRNHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 138 ~~~~~gk~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
.+...|.+.|+-.+..... .+.++++.+|...+ ..+.++++.+.+...
T Consensus 107 e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~-~dl~~ll~~h~~~~~ 157 (425)
T PRK00725 107 ENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYK-MDYSRMLADHVESGA 157 (425)
T ss_pred CccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEec-cCHHHHHHHHHHcCC
Confidence 1113688888877776653 57899999998664 457888887665544
No 213
>PHA01631 hypothetical protein
Probab=49.50 E-value=27 Score=27.31 Aligned_cols=65 Identities=9% Similarity=0.125 Sum_probs=38.7
Q ss_pred ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEE-cCC--CCCHHHHHHHHHHH---cCCCEEEEEeCCCCCChh
Q 023346 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL-LGR--NHGKGEAIRKGMLH---SRGELLLMLDADGATKVT 172 (283)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~-~~~--~~gk~~a~n~g~~~---a~~d~i~~~D~D~~~~~~ 172 (283)
.++.++|||.-.+-|.-.++.. . +++.... +.+ +..-+..+-..+.. ..-|+++++|+|..+++-
T Consensus 17 ~~D~V~VD~~~~~~~~c~~~~~----~-~~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 17 DFDYVVVDKTFNDMTECQIPKY----Q-EKIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred cccEEEEccccccccccccccc----C-CceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCc
Confidence 6789999997776554322222 1 1333222 221 22344555556443 567899999999998765
No 214
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=49.08 E-value=72 Score=28.49 Aligned_cols=102 Identities=17% Similarity=0.060 Sum_probs=56.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC----CCcEEEE----EcCC--
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT----VDNVRII----LLGR-- 140 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~~~~~~~----~~~~-- 140 (283)
++|.-+..+.|...|+.+.+ ..--+|+|+-..-.+...+.+.+. .++. ...+.++ ...+
T Consensus 28 llpv~gk~pli~~~l~~l~~----------~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 96 (380)
T PRK05293 28 AVPFGGKYRIIDFTLSNCAN----------SGIDTVGVLTQYQPLELNNHIGIG-SPWDLDRINGGVTILPPYSESEGGK 96 (380)
T ss_pred eeeeCCceeehhHHHHHHHh----------CCCCEEEEEecCCHHHHHHHHhCC-CcccccCCCCCEEEeCCcccCCCCc
Confidence 56666654677777777765 223477777654333222222110 1111 0124443 1122
Q ss_pred -CCCHHHHHHHHHHHcC---CCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346 141 -NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAV 184 (283)
Q Consensus 141 -~~gk~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~~~~~~~~~ 184 (283)
..|-+.|+..+..... .+.++++.+|...+. .+.++++.+.+.
T Consensus 97 ~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~-d~~~ll~~h~~~ 143 (380)
T PRK05293 97 WYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKM-DYDKMLDYHKEK 143 (380)
T ss_pred ccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcC-CHHHHHHHHHhc
Confidence 2678888888877653 478999999987655 455676665443
No 215
>PLN03153 hypothetical protein; Provisional
Probab=49.02 E-value=2.4e+02 Score=26.69 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=29.4
Q ss_pred CCHHHHHHH------HHHH--cCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346 142 HGKGEAIRK------GMLH--SRGELLLMLDADGATKVTDLEKLESQIH 182 (283)
Q Consensus 142 ~gk~~a~n~------g~~~--a~~d~i~~~D~D~~~~~~~l~~~~~~~~ 182 (283)
.|.+.+++. .++. -..+|++++|+|+.+..+-|.++++.++
T Consensus 188 ~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YD 236 (537)
T PLN03153 188 TGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYD 236 (537)
T ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcC
Confidence 466666554 2332 3569999999999998777777777664
No 216
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=48.20 E-value=1.6e+02 Score=24.48 Aligned_cols=101 Identities=7% Similarity=0.057 Sum_probs=65.5
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (283)
Q Consensus 70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n 149 (283)
++.|. ..+..|..+|+.+.. ....-+|+|.- |++++-..++.+..+++ +.+++..+ ..--.-.-
T Consensus 21 vLlpL-~~~pmI~~~lervrk---------s~~~d~ivvAT--S~~~~d~~l~~~~~~~G---~~vfrGs~-~dVL~Rf~ 84 (241)
T COG1861 21 VLLPL-GGEPMIEYQLERVRK---------SKDLDKIVVAT--SDKEEDDALEEVCRSHG---FYVFRGSE-EDVLQRFI 84 (241)
T ss_pred hhhhc-CCCchHHHHHHHHhc---------cccccceEEEe--cCCcchhHHHHHHHHcC---eeEecCCH-HHHHHHHH
Confidence 34444 455677888888876 22245666653 56666667777766654 77776431 11122223
Q ss_pred HHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCC
Q 023346 150 KGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVGR 186 (283)
Q Consensus 150 ~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~ 186 (283)
.++++-.++.|+-+-+|+.+ +|+.+..++..+-+.+.
T Consensus 85 ~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~ga 122 (241)
T COG1861 85 IAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGA 122 (241)
T ss_pred HHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCC
Confidence 45566678999999999987 89999999887766544
No 217
>PF15102 TMEM154: TMEM154 protein family
Probab=46.33 E-value=12 Score=28.54 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=7.8
Q ss_pred EEEEEeecCCC
Q 023346 68 ISLIIPAFNEE 78 (283)
Q Consensus 68 vsviip~~ne~ 78 (283)
-.|.+|.|.|.
T Consensus 108 Env~~PiFEed 118 (146)
T PF15102_consen 108 ENVKVPIFEED 118 (146)
T ss_pred ccccccccccC
Confidence 46778888773
No 218
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=46.09 E-value=33 Score=28.20 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=42.6
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 023346 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL 138 (283)
Q Consensus 69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~ 138 (283)
.|||+.+||+. |+...+ ..+.+.-.|+|=++.|.-.+.++.+..+|| ++.++-+
T Consensus 31 ~VIi~gR~e~~-----L~e~~~---------~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P--~lNvliN 84 (245)
T COG3967 31 TVIICGRNEER-----LAEAKA---------ENPEIHTEVCDVADRDSRRELVEWLKKEYP--NLNVLIN 84 (245)
T ss_pred EEEEecCcHHH-----HHHHHh---------cCcchheeeecccchhhHHHHHHHHHhhCC--chheeee
Confidence 79999998753 555554 244677788888888999999999999999 7877775
No 219
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=45.83 E-value=94 Score=24.66 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=13.1
Q ss_pred CCCEEEEEeCCCCCChhhHHHHHHH
Q 023346 156 RGELLLMLDADGATKVTDLEKLESQ 180 (283)
Q Consensus 156 ~~d~i~~~D~D~~~~~~~l~~~~~~ 180 (283)
+-.+++|+|+|.. -+.+++.+..
T Consensus 47 ~rgVIIfTDpD~~--GekIRk~i~~ 69 (174)
T TIGR00334 47 KQGVIILTDPDFP--GEKIRKKIEQ 69 (174)
T ss_pred cCCEEEEeCCCCc--hHHHHHHHHH
Confidence 3567777777753 3445444443
No 220
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=45.25 E-value=1.1e+02 Score=25.49 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=41.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc--------CCCEEEEEeCCCCCChhhHHHHHHHH
Q 023346 132 NVRIILLGRNHGKGEAIRKGMLHS--------RGELLLMLDADGATKVTDLEKLESQI 181 (283)
Q Consensus 132 ~~~~~~~~~~~gk~~a~n~g~~~a--------~~d~i~~~D~D~~~~~~~l~~~~~~~ 181 (283)
++.=+..+++.||...+..+..++ .+--|+|+|-|..++--.|.+++++=
T Consensus 39 ~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hr 96 (293)
T KOG2859|consen 39 TLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHR 96 (293)
T ss_pred cEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHH
Confidence 566677788999999999888776 24579999999999999988888754
No 221
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=44.14 E-value=73 Score=24.27 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 023346 10 ALLVVVVIILFGLISAIIFEAYRRRDNHAH 39 (283)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (283)
.+++.+++....+++++++...|++++...
T Consensus 33 tILiaIvVliiiiivli~lcssRKkKaaAA 62 (189)
T PF05568_consen 33 TILIAIVVLIIIIIVLIYLCSSRKKKAAAA 62 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence 334444444444455555555555554443
No 222
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=43.49 E-value=1.1e+02 Score=21.75 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCCceEEEEEeC-CCCcchHHHHHHHHHHcCC
Q 023346 82 PGALDETLNYLQQRAAKDKSFTYEVLIIDD-GSSDGTKRVAFDFVRKYTV 130 (283)
Q Consensus 82 ~~~l~s~~~~~~~~~~~~~~~~~eiivvdd-~s~d~t~~~~~~~~~~~~~ 130 (283)
...|+.+++ .+++.+.|+|-| |..| .++-.++++++|.
T Consensus 52 ~~~i~~i~~---------~fP~~kfiLIGDsgq~D--peiY~~ia~~~P~ 90 (100)
T PF09949_consen 52 RDNIERILR---------DFPERKFILIGDSGQHD--PEIYAEIARRFPG 90 (100)
T ss_pred HHHHHHHHH---------HCCCCcEEEEeeCCCcC--HHHHHHHHHHCCC
Confidence 344556655 355666666554 4445 7777788888883
No 223
>PRK13660 hypothetical protein; Provisional
Probab=42.25 E-value=1.8e+02 Score=23.30 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=58.3
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcch--HHHHHHHHHHcCCCcEEEEEc-CCC
Q 023346 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT--KRVAFDFVRKYTVDNVRIILL-GRN 141 (283)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t--~~~~~~~~~~~~~~~~~~~~~-~~~ 141 (283)
..++.+++|..|.+....+.=+.-+..+..+ -.+++++......+. ...=.++.-++. ..+-.+-. ...
T Consensus 71 ~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~-------aD~v~~vs~~~y~~p~q~~~rn~fmv~~s-d~~i~~YD~e~~ 142 (182)
T PRK13660 71 DLKLAVITPFEEHGENWNEANQEKLANILKQ-------ADFVKSISKRPYESPAQFRQYNQFMLEHT-DGALLVYDEENE 142 (182)
T ss_pred CeEEEEEeCccchhhcCCHHHHHHHHHHHHh-------CCEEEEecCCCCCChHHHHHHHHHHHHcc-CeEEEEEcCCCC
Confidence 4569999999998766544333333333221 235666655444222 222233443443 23444444 434
Q ss_pred CCHHHHHHHHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346 142 HGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIH 182 (283)
Q Consensus 142 ~gk~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~ 182 (283)
+|.....+.|.+.. ..+++.+ +|+.|+.+++.+.
T Consensus 143 Ggt~y~~~~A~k~~~~~~y~i~~I-------~~~~l~~~~~~~~ 179 (182)
T PRK13660 143 GSPKYFYEAAKKKQEKEDYPLDLI-------TFDDLQEIAEEWS 179 (182)
T ss_pred CChHHHHHHHHHhhhccCceEEEe-------CHHHHHHHHHHhh
Confidence 66888888888774 4455554 7888888877554
No 224
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=41.55 E-value=3e+02 Score=25.75 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=49.2
Q ss_pred EeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHH
Q 023346 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKG 151 (283)
Q Consensus 72 ip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g 151 (283)
+|..+....+..+++.+.. ...-+.+||- ++.-...+++-....+....+++-.|..++.+.|.-.|
T Consensus 32 l~l~~~~sllq~t~~r~~~----------~~~~~~iivt---~~~~~~~v~~ql~~~~~~~~~ii~EP~~rnTApaiala 98 (478)
T PRK15460 32 LCLKGDLTMLQTTICRLNG----------VECESPVVIC---NEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALA 98 (478)
T ss_pred eECCCCCCHHHHHHHHHHh----------CCCCCcEEEe---CHHHHHHHHHHHHhcCCccccEEecCCCCChHHHHHHH
Confidence 5666777777777777654 1122444552 22333344333333331123566666666766666655
Q ss_pred HHHc--C----CCEEEEEeCCCCCCh
Q 023346 152 MLHS--R----GELLLMLDADGATKV 171 (283)
Q Consensus 152 ~~~a--~----~d~i~~~D~D~~~~~ 171 (283)
..++ + ...++++=+|-.+.+
T Consensus 99 a~~~~~~~~~~~~~v~vlPaDH~I~d 124 (478)
T PRK15460 99 ALAAKRHSPESDPLMLVLAADHVIAD 124 (478)
T ss_pred HHHHHHhcCCCCCeEEEeccccccCC
Confidence 5443 1 258999999988854
No 225
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=41.02 E-value=1.6e+02 Score=26.88 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=58.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC----CCc-EEEEEcC------
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT----VDN-VRIILLG------ 139 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~~~-~~~~~~~------ 139 (283)
++|.-|..+.|.-.|+++.+ ..--+|+|+-....+...+.+.+ .+. ... +.+....
T Consensus 28 Llpi~gk~plI~~~L~~l~~----------~Gi~~vivv~~~~~~~i~~~l~~---~~~~~~~~~g~~~i~~~~~~~~~~ 94 (429)
T PRK02862 28 AVPLAGKYRLIDIPISNCIN----------SGINKIYVLTQFNSASLNRHISQ---TYNFDGFSGGFVEVLAAQQTPENP 94 (429)
T ss_pred eeEECCeeEEeHHHHHHHHH----------CCCCEEEEEecCCHHHHHHHHhc---CcCccccCCCEEEEeCCcccCCCC
Confidence 66776765677777777665 22347777765433333443332 110 001 2222111
Q ss_pred C-CCCHHHHHHHHHHHcC---CCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346 140 R-NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVG 185 (283)
Q Consensus 140 ~-~~gk~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~~~~~~~~~~ 185 (283)
. ..|.+.|+..+..... .+.++++.+|...+ ..++++++.+.+..
T Consensus 95 ~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~-~dl~~ll~~h~~~~ 143 (429)
T PRK02862 95 SWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYR-MDYRLFVQHHRETG 143 (429)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEe-CCHHHHHHHHHHcC
Confidence 1 1588888888877653 36789999999664 56778888775543
No 226
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=40.08 E-value=1.1e+02 Score=20.39 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=38.2
Q ss_pred ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCC
Q 023346 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166 (283)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D 166 (283)
..++.++-..|.|+. ++.+..+.+ .+..++...+.|-..|+-..++..+.-+-+.+=+|
T Consensus 9 ~~~~~~lvS~s~DGe--~ia~~~~~~---G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpD 67 (74)
T PF04028_consen 9 RRKIAALVSRSRDGE--LIARVLERF---GFRTIRGSSSRGGARALREMLRALKEGYSIAITPD 67 (74)
T ss_pred CCCEEEEEccCcCHH--HHHHHHHHc---CCCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCC
Confidence 456666666677763 333334443 58888888889999999999988764333333333
No 227
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=39.20 E-value=2e+02 Score=22.99 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=34.5
Q ss_pred EEEEEc--CCCCCHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHH
Q 023346 133 VRIILL--GRNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLE 178 (283)
Q Consensus 133 ~~~~~~--~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~ 178 (283)
+.++.. ....|.-.++..+++..+.++++++=+|..+ +++.++++.
T Consensus 65 ~~~v~d~~~~~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 65 APFLLEKESDLFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred CcEEecCCCCCCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHHH
Confidence 344443 2235666777788887888999999999966 889898884
No 228
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=39.14 E-value=70 Score=28.99 Aligned_cols=67 Identities=18% Similarity=0.073 Sum_probs=51.6
Q ss_pred CCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346 113 SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAV 184 (283)
Q Consensus 113 s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~ 184 (283)
.++++.+..++...++. ..+++..-.....+.|++.++++.+ + ++.|+|..+ .|+.+..+.....+-
T Consensus 136 ~~~~~~~~~~~~~~e~~--p~~~v~~~~~~~~~ea~~~evE~~r--~-~~~dad~~i~~P~~~~~li~~~k~~ 203 (415)
T KOG1971|consen 136 HSANIKEFFRRHGSEYS--PGKFVFPMFQPDFSEARLMEVEHFR--K-FSVDADFVITRPNTLRNLIVLNKEF 203 (415)
T ss_pred chhccHHHHHHhccccC--CeeEEeeccCccHHHHHHHHHHHhh--h-cccccceeccCChhHHHHHHHhhhc
Confidence 34567778887776665 3455554457899999999999999 3 889999988 699998887777665
No 229
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=38.06 E-value=2e+02 Score=26.34 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=55.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC--------CCcEEEEEcC---
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--------VDNVRIILLG--- 139 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--------~~~~~~~~~~--- 139 (283)
++|.-+..+.|.-.|+++.+ ..--||+|+-....+...+.+. ..+. ...+.+....
T Consensus 28 llpv~g~~plId~~L~~l~~----------~Gi~~i~iv~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~i~~~~q~~ 94 (436)
T PLN02241 28 AVPIGGNYRLIDIPMSNCIN----------SGINKIYVLTQFNSASLNRHLS---RAYNFGNGGNFGDGFVEVLAATQTP 94 (436)
T ss_pred ceEeCCcceEehHHHHHHHh----------CCCCEEEEEeccCHHHHHHHHh---ccCCCCCCcccCCCCEEEcCCcccC
Confidence 55665655666667777665 2345777776543333333332 2111 0113332211
Q ss_pred ----CCCCHHHHHHHHHHHc---C---CCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 140 ----RNHGKGEAIRKGMLHS---R---GELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 140 ----~~~gk~~a~n~g~~~a---~---~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
...|.+.|+..++... . .+.++++.+|..... .+.++++...+...
T Consensus 95 ~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~-dl~~ll~~h~~~~a 150 (436)
T PLN02241 95 GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRM-DYMDFVQKHRESGA 150 (436)
T ss_pred CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEcc-CHHHHHHHHHHcCC
Confidence 1357777776554332 2 467889999997654 57777776655443
No 230
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.97 E-value=37 Score=32.01 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=70.7
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCC--CcEEEEEcCCCC
Q 023346 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--DNVRIILLGRNH 142 (283)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~~~~~~~~~~~ 142 (283)
.-..+||+-+|.+++++-..|+.+-. -+| --+|+||=|+..|+..+.. +|. ..+.+++.++|.
T Consensus 648 REQFTvVmLTYERe~VLm~sLeRL~g--------LPY-LnKvvVVWNspk~P~ddl~------WPdigvPv~viR~~~Ns 712 (907)
T KOG2264|consen 648 REQFTVVMLTYEREAVLMGSLERLHG--------LPY-LNKVVVVWNSPKDPPDDLT------WPDIGVPVEVIRVAENS 712 (907)
T ss_pred cceEEEEEEEehHHHHHHHHHHHhhC--------Ccc-cceEEEEeCCCCCChhccc------CcCCCCceEEEEccccc
Confidence 34699999999999998877777664 344 3478888787766655432 221 257778776552
Q ss_pred CHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD 193 (283)
Q Consensus 143 gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (283)
= .++-.-......+-|+-+|+|..+..+-+---.+.-.++.+..+.++.
T Consensus 713 L--NNRFlPwd~IETEAvLS~DDDahLrhdEI~fgFRVWRE~RDRiVGFPg 761 (907)
T KOG2264|consen 713 L--NNRFLPWDRIETEAVLSLDDDAHLRHDEIIFGFRVWRENRDRIVGFPG 761 (907)
T ss_pred c--cccccCchhhhheeeeecccchhhhhhheeeeeehhhhcccccccCCc
Confidence 1 111123356778999999999988766654333444455454444433
No 231
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=35.95 E-value=1.4e+02 Score=27.88 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=41.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG 139 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~ 139 (283)
+|.+|.....+...|....+ -..+++|+|||..+.-+-...++++....- ++.++...
T Consensus 362 viltyg~s~vV~~ill~A~~---------~~k~frVvVVDSRP~~EG~~~lr~Lv~~Gi--nctYv~I~ 419 (556)
T KOG1467|consen 362 VLLTYGSSSVVNMILLEAKE---------LGKKFRVVVVDSRPNLEGRKLLRRLVDRGI--NCTYVLIN 419 (556)
T ss_pred EEEEecchHHHHHHHHHHHH---------hCcceEEEEEeCCCCcchHHHHHHHHHcCC--CeEEEEeh
Confidence 45688888776665555333 366899999999888888888888876644 66666543
No 232
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=34.62 E-value=4e+02 Score=25.11 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=68.1
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCC-CcEEEEEcCCCC
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV-DNVRIILLGRNH 142 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~~~~~~~~~~~ 142 (283)
..++|.|++=+|-.+ .+++.++.+.+ -...++++|--+ +++-.+.+++...+.+. .+++|...+ |+
T Consensus 263 ~~~kiav~lHv~Y~D-Ll~E~l~~l~~---------~p~~~Dl~ITt~--~~~~~~~i~~~l~~~~~~~~~~v~vv~-Nr 329 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-LLEEILDYLAN---------IPFPYDLFITTD--SEEKKEEIEEILAKRPGFKNAEVRVVE-NR 329 (498)
T ss_pred CCCcEEEEEEEEcHh-hHHHHHHHHHh---------CCCCeEEEEECC--chhhHHHHHHHHHhccCCCceEEEEeC-CC
Confidence 456788888887754 23444444333 355789998643 22234455554433332 356665553 66
Q ss_pred C--HHHHH---HHHHHHcCCCEEEEEeCCCCCC--------------------hhhHHHHHHHHHHcCCcccccccc
Q 023346 143 G--KGEAI---RKGMLHSRGELLLMLDADGATK--------------------VTDLEKLESQIHAVGRKEYNHGDS 194 (283)
Q Consensus 143 g--k~~a~---n~g~~~a~~d~i~~~D~D~~~~--------------------~~~l~~~~~~~~~~~~~~~~~~~~ 194 (283)
| -+.-+ ...+...+.|+|+.+.+--.+. ++..+++++.|+++|..+++.+..
T Consensus 330 GRDi~pfLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p~lGlv~P~~ 406 (498)
T PF05045_consen 330 GRDILPFLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDPRLGLVIPDI 406 (498)
T ss_pred CccHHHHHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCceEEeCCc
Confidence 6 22222 2333335789999998765544 244667777788888877666643
No 233
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=33.80 E-value=65 Score=31.56 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHH
Q 023346 82 PGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (283)
Q Consensus 82 ~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (283)
..++-|+++ .+||.+++-+.|.|||.+.-|.+.+.+.
T Consensus 19 ~nTvLS~lA------~dYP~~kls~YvSDDg~s~ltf~al~Ea 55 (720)
T PF03552_consen 19 ANTVLSILA------YDYPVEKLSCYVSDDGGSMLTFYALMEA 55 (720)
T ss_pred HHHHHHHHh------hcCCccceeEEEecCCchHHHHHHHHHH
Confidence 456778887 5688889999999999999998776553
No 234
>KOG3765 consensus Predicted glycosyltransferase [Carbohydrate transport and metabolism]
Probab=33.41 E-value=62 Score=29.29 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (283)
Q Consensus 144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~ 183 (283)
....+|.|.+.|.++++++.|.|..+..+.-+.+-..+.+
T Consensus 179 ~Nl~RNvAr~ga~t~~~l~sD~dm~~S~gl~~~~~~~~~q 218 (386)
T KOG3765|consen 179 FNLMRNVARKGANTDYMLMSDIDMVPSYGLADMLKKILNQ 218 (386)
T ss_pred hHHHHHHHHhhcCCCcEEEEeeeeeeccchHHHHHHHHHH
Confidence 6788899999999999999999999988776666555544
No 235
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=32.59 E-value=1.8e+02 Score=25.82 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=33.7
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH
Q 023346 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127 (283)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~ 127 (283)
.-++-+||-++|+++++.-+++|+.+ ...--|.++|- |.|.-.+++.++.+.
T Consensus 116 ~~~~vlV~qVHnRp~Ylr~lveSlrk---------~kGI~~tLlif--SHD~~~~eiN~~I~~ 167 (455)
T KOG2791|consen 116 KDRVVLVLQVHNRPQYLRVLVESLRK---------VKGISETLLIF--SHDGYFEEINRIIES 167 (455)
T ss_pred cceEEEEEEEcCcHHHHHHHHHHHHh---------ccCccceEEEE--eccchHHHHHHHHhh
Confidence 44578889999999999999999887 12222333222 455555556655554
No 236
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.29 E-value=2.8e+02 Score=22.62 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=50.1
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEE-eCCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLII-DDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (283)
Q Consensus 68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivv-dd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 145 (283)
|.||+|..+.. ......+.+.+..... .+++.++ +...+.. -.+.++++..+.+ ..-++.........
T Consensus 1 I~vi~~~~~~~-~~~~~~~g~~~~a~~~-------g~~~~~~~~~~~d~~~q~~~i~~~i~~~~--d~Iiv~~~~~~~~~ 70 (257)
T PF13407_consen 1 IGVIVPSMDNP-FWQQVIKGAKAAAKEL-------GYEVEIVFDAQNDPEEQIEQIEQAISQGV--DGIIVSPVDPDSLA 70 (257)
T ss_dssp EEEEESSSSSH-HHHHHHHHHHHHHHHH-------TCEEEEEEESTTTHHHHHHHHHHHHHTTE--SEEEEESSSTTTTH
T ss_pred cEEEeCCCCCH-HHHHHHHHHHHHHHHc-------CCEEEEeCCCCCCHHHHHHHHHHHHHhcC--CEEEecCCCHHHHH
Confidence 56788887776 6666666666655543 5677775 6655554 4466777765544 44444433333333
Q ss_pred HHHHHHHHHcCCCEEEEEeCC
Q 023346 146 EAIRKGMLHSRGELLLMLDAD 166 (283)
Q Consensus 146 ~a~n~g~~~a~~d~i~~~D~D 166 (283)
..++.+.+ .|=-|+++|.+
T Consensus 71 ~~l~~~~~--~gIpvv~~d~~ 89 (257)
T PF13407_consen 71 PFLEKAKA--AGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHH--TTSEEEEESST
T ss_pred HHHHHHhh--cCceEEEEecc
Confidence 44444322 34467777777
No 237
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=32.18 E-value=1.5e+02 Score=22.96 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=37.3
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 023346 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG 139 (283)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~ 139 (283)
+|.||+=....-+..++..+-+-+ -.-++|+-||.- -.|.+.+.++.++.....++++.-.
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~---------fgi~ye~~VvSA---HRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEE---------FGVPYEVRVVSA---HRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHH---------cCCCeEEEEEec---cCCHHHHHHHHHHHHHCCCeEEEec
Confidence 578888666655554444333332 466899999954 4555666666554444478877753
No 238
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=31.85 E-value=35 Score=22.14 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=10.5
Q ss_pred CceEEEEEeecCC
Q 023346 65 EKYISLIIPAFNE 77 (283)
Q Consensus 65 ~p~vsviip~~ne 77 (283)
-|+||.|||+-|+
T Consensus 66 GPkiSFVIPCN~~ 78 (78)
T PF15224_consen 66 GPKISFVIPCNNH 78 (78)
T ss_pred CCceeEEEeCCCC
Confidence 5789999998653
No 239
>PF14979 TMEM52: Transmembrane 52
Probab=30.65 E-value=2.5e+02 Score=21.56 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=10.2
Q ss_pred ecCCCCChHHHHHHHHH
Q 023346 74 AFNEEHRLPGALDETLN 90 (283)
Q Consensus 74 ~~ne~~~l~~~l~s~~~ 90 (283)
+.+....+..++.|...
T Consensus 70 a~D~DSt~hsTvTS~sS 86 (154)
T PF14979_consen 70 AVDSDSTLHSTVTSYSS 86 (154)
T ss_pred eccCCccccchhhhhhc
Confidence 44555566667666654
No 240
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=30.46 E-value=13 Score=20.02 Aligned_cols=14 Identities=14% Similarity=0.636 Sum_probs=10.0
Q ss_pred EEEEEeecCCCCCh
Q 023346 68 ISLIIPAFNEEHRL 81 (283)
Q Consensus 68 vsviip~~ne~~~l 81 (283)
|.|+.|+||+...|
T Consensus 9 vgvl~pvy~~kgei 22 (36)
T PF09151_consen 9 VGVLEPVYNQKGEI 22 (36)
T ss_dssp SSBEEEEE-TTS-E
T ss_pred ceEEEEeecCCCcE
Confidence 78999999987654
No 241
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=29.98 E-value=2.6e+02 Score=23.20 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=17.8
Q ss_pred cCCCEEEEEeCCCCCChhhHHHHHH
Q 023346 155 SRGELLLMLDADGATKVTDLEKLES 179 (283)
Q Consensus 155 a~~d~i~~~D~D~~~~~~~l~~~~~ 179 (283)
...|-++++|+|..+..+ |..+.+
T Consensus 88 ~~~drvlylD~D~~v~~~-i~~Lf~ 111 (240)
T cd02537 88 TEYDKVVFLDADTLVLRN-IDELFD 111 (240)
T ss_pred cccceEEEEeCCeeEccC-HHHHhC
Confidence 467999999999999654 444443
No 242
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=29.23 E-value=1.8e+02 Score=19.55 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=36.6
Q ss_pred CCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCC
Q 023346 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGA 168 (283)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~ 168 (283)
..++++|.|.- |++.+..+++.++.......+... .+....+...+....-+.++++|.|..
T Consensus 33 ~~~v~~v~Vs~---d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 33 KDDVEFVFVSL---DEDEEEWKKFLKKNNFPWYNVPFD---DDNNSELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp TTTEEEEEEE----SSSHHHHHHHHHTCTTSSEEEETT---THHHHHHHHHTT-TSSSEEEEEETTSB
T ss_pred CCCEEEEEEEe---CCCHHHHHHHHHhcCCCceEEeeC---cchHHHHHHHCCCCcCCEEEEECCCCC
Confidence 46899999954 555666666666652123443322 233445555555556799999998853
No 243
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=28.55 E-value=2.6e+02 Score=21.12 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=44.7
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC-CCcEEEEEcCCCCCHHHHHHHHHHH
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT-VDNVRIILLGRNHGKGEAIRKGMLH 154 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~~~~~gk~~a~n~g~~~ 154 (283)
+..-.+...|+...+.+.. .+...-.||++-||-.++..++.+.+..... ...+..+......+ ...+....+.
T Consensus 77 ~g~T~l~~al~~a~~~l~~----~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~~-~~~l~~ia~~ 151 (171)
T cd01461 77 LGGTNMNDALEAALELLNS----SPGSVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSDVN-TYLLERLARE 151 (171)
T ss_pred CCCcCHHHHHHHHHHhhcc----CCCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCccC-HHHHHHHHHc
Confidence 3344455555555553321 2344678999999986666655555544322 12333333321122 2344444455
Q ss_pred cCCCEEEEEeCCC
Q 023346 155 SRGELLLMLDADG 167 (283)
Q Consensus 155 a~~d~i~~~D~D~ 167 (283)
..|.++.+.|++.
T Consensus 152 ~gG~~~~~~~~~~ 164 (171)
T cd01461 152 GRGIARRIYETDD 164 (171)
T ss_pred CCCeEEEecChHH
Confidence 5667776666553
No 244
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=28.14 E-value=2.7e+02 Score=24.79 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=39.8
Q ss_pred cEEEEEcC-CCCCHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHHH
Q 023346 132 NVRIILLG-RNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIH 182 (283)
Q Consensus 132 ~~~~~~~~-~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~~ 182 (283)
.+.++... ...|...++-.|++++..+.++++=+|..+ +++.+.++++.+.
T Consensus 219 ~v~~I~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 219 NLPTLPDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred CCeEEeCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence 34555433 347999999999998876677899999885 8899999988774
No 245
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=27.91 E-value=3.7e+02 Score=24.11 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.6
Q ss_pred CCCEEEEEeCCCCCChhhHHHHH
Q 023346 156 RGELLLMLDADGATKVTDLEKLE 178 (283)
Q Consensus 156 ~~d~i~~~D~D~~~~~~~l~~~~ 178 (283)
.+|++++.|.|.++.|+.|..+-
T Consensus 178 ~dDliivSDvDEIP~p~~l~~Lr 200 (356)
T PF04724_consen 178 DDDLIIVSDVDEIPSPETLKFLR 200 (356)
T ss_pred CCCEEEEcCcccccCHHHHHHHH
Confidence 58999999999999999997773
No 246
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=27.22 E-value=4.5e+02 Score=23.38 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=68.6
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcch--HHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT--KRVAFDFVRKYTVDNVRIILLGRNHG 143 (283)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t--~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (283)
|.+-++|...-+.-.. +..++++..+.......+...+++-.-.++.. ...+.+-.+.++ .+-+.....+..
T Consensus 95 ~~lLl~V~S~~~~far----R~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~yg--DIi~~df~Dty~ 168 (349)
T KOG2287|consen 95 PELLLLVKSAPDNFAR----RNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYG--DIIQVDFEDTYF 168 (349)
T ss_pred ceEEEEEecCCCCHHH----HHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhC--CEEEEecccchh
Confidence 5566666665444333 34444444321111123456655555444332 444444456666 666666554422
Q ss_pred -----HHHHHHHHHHHc-CCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346 144 -----KGEAIRKGMLHS-RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (283)
Q Consensus 144 -----k~~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 194 (283)
--..++.+.+++ ..++|+-+|+|..+.++.|-+.++... .+.....+|..
T Consensus 169 nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~-~~~~~~~~G~v 224 (349)
T KOG2287|consen 169 NLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLN-DPSSDLYYGRV 224 (349)
T ss_pred chHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccC-CCCcceEEEee
Confidence 235566666655 489999999999999998877776653 34444444433
No 247
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=26.80 E-value=1.8e+02 Score=25.60 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=10.4
Q ss_pred CCCEEEEEeCCCCCChhhHHHH
Q 023346 156 RGELLLMLDADGATKVTDLEKL 177 (283)
Q Consensus 156 ~~d~i~~~D~D~~~~~~~l~~~ 177 (283)
.+.+++|+|+...++|.+++++
T Consensus 80 ~g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 80 QGGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp TT-EEEEEESSS---HHHHHHT
T ss_pred ccceeEEecCcccchhhHHHhc
Confidence 4566666666666666555543
No 248
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=26.52 E-value=2.9e+02 Score=22.28 Aligned_cols=73 Identities=8% Similarity=0.195 Sum_probs=40.6
Q ss_pred CceEEEEEeecCCCCC-h-HHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346 65 EKYISLIIPAFNEEHR-L-PGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (283)
Q Consensus 65 ~p~vsviip~~ne~~~-l-~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (283)
.+.|+.++.+|...-. . -+.++.+++ ....||++++.+-.|+ .++++++..-. +... .+-.
T Consensus 112 ~~~V~rVvV~ykDRL~RFGfe~le~~~~----------a~~~eivvv~~~e~~~-eELveDlisIl-----tsfs-~kLY 174 (193)
T COG2452 112 GNSVRRVVVSYKDRLNRFGFELVEAVCK----------AHNVEIVVVNQEDKDS-EELVEDLVSIL-----TSFS-AKLY 174 (193)
T ss_pred CCceeEEEEEccchHhHHhHHHHHHHHH----------hcCcEEEEecCCCCCH-HHHHHHHHHHH-----HHHH-HHHh
Confidence 4568999999877533 1 233333333 3378999998766554 55555553211 0111 1235
Q ss_pred CHHHHHHHHHHH
Q 023346 143 GKGEAIRKGMLH 154 (283)
Q Consensus 143 gk~~a~n~g~~~ 154 (283)
|+..+-|..+.+
T Consensus 175 G~Rs~k~~~~~~ 186 (193)
T COG2452 175 GKRSHKNEKVKA 186 (193)
T ss_pred hhHHHHHHHHHH
Confidence 666666665544
No 249
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=26.32 E-value=1.7e+02 Score=19.32 Aligned_cols=52 Identities=19% Similarity=0.375 Sum_probs=32.8
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC
Q 023346 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR 140 (283)
Q Consensus 75 ~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~ 140 (283)
|+..+.+.+.|+.+.++ .+ .+++|-.|+..+.-.++++++++.. +.++..+.
T Consensus 14 ~~D~~~i~~~Ld~~~~~---------~~--~~~lvhGga~~GaD~iA~~wA~~~g---v~~~~~~a 65 (71)
T PF10686_consen 14 WTDHELIWAALDKVHAR---------HP--DMVLVHGGAPKGADRIAARWARERG---VPVIRFPA 65 (71)
T ss_pred cccHHHHHHHHHHHHHh---------CC--CEEEEECCCCCCHHHHHHHHHHHCC---CeeEEeCc
Confidence 44455566666665551 22 3567777777888888888887764 66665543
No 250
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=26.19 E-value=2.2e+02 Score=24.81 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHHcC-CCcEE-EEEcCCCCCHHHHHHHHHHHcC-CCEE------------------EEE-eCCCCCChh
Q 023346 115 DGTKRVAFDFVRKYT-VDNVR-IILLGRNHGKGEAIRKGMLHSR-GELL------------------LML-DADGATKVT 172 (283)
Q Consensus 115 d~t~~~~~~~~~~~~-~~~~~-~~~~~~~~gk~~a~n~g~~~a~-~d~i------------------~~~-D~D~~~~~~ 172 (283)
++|.++++.+.+... ....+ ++..+...||+.++..++..|. .+|| --- +......|.
T Consensus 5 ~~t~el~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~vp~a~~~~~~~~~~~~~~~~~~~~~qP~ 84 (309)
T PF10236_consen 5 KPTLELINKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYVPSAQDWVNGTTDYAPSPYNPGLYDQPM 84 (309)
T ss_pred hHHHHHHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEcCCHHHHhhCCeeEeeCCCCCCeeecHH
Confidence 456666666554321 12344 4455566889999999888763 1222 222 345556788
Q ss_pred hHHHHHHHHHHcCC
Q 023346 173 DLEKLESQIHAVGR 186 (283)
Q Consensus 173 ~l~~~~~~~~~~~~ 186 (283)
.-.++++.|.+.++
T Consensus 85 ~a~~~L~~~~~~N~ 98 (309)
T PF10236_consen 85 YAAKWLKKFLKANE 98 (309)
T ss_pred HHHHHHHHHHHHhH
Confidence 88888888876554
No 251
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=26.08 E-value=5.1e+02 Score=24.10 Aligned_cols=83 Identities=7% Similarity=0.011 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHH-cCCCE
Q 023346 81 LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLH-SRGEL 159 (283)
Q Consensus 81 l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~-a~~d~ 159 (283)
+.++|.++-+++... ...++|.-..+..+..+++.++.+++. --.|+.+.........+...++. +.+ +
T Consensus 55 l~esL~~L~~~L~~~-------g~~L~v~~g~~~g~~~~vl~~l~~~~~--i~~v~~~~~~~~~~~~rd~~v~~~l~~-i 124 (472)
T PRK10674 55 INAQLNALQIALAEK-------GIPLLFHEVDDFAASVEWLKQFCQQHQ--VTHLFYNYQYEVNERQRDAAVERALRN-V 124 (472)
T ss_pred HHHHHHHHHHHHHHc-------CCceEEEecCCcCCHHHHHHHHHHHcC--CCEEEEecccCHHHHHHHHHHHHHcCC-C
Confidence 556666666665532 456777765445566777888877765 23334333222334444444444 333 3
Q ss_pred EEE-EeCCCCCChhh
Q 023346 160 LLM-LDADGATKVTD 173 (283)
Q Consensus 160 i~~-~D~D~~~~~~~ 173 (283)
.+. ++++..++|+.
T Consensus 125 ~~~~~~~~~l~~~~~ 139 (472)
T PRK10674 125 VCQGFDDSVLLPPGS 139 (472)
T ss_pred EEEEecCceEeCccc
Confidence 332 45555555544
No 252
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=25.95 E-value=1.2e+02 Score=26.83 Aligned_cols=103 Identities=12% Similarity=0.078 Sum_probs=52.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCc-chHHHHHHHHHHcCCCc------EEEEEcCC-C-
Q 023346 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSD-GTKRVAFDFVRKYTVDN------VRIILLGR-N- 141 (283)
Q Consensus 71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d-~t~~~~~~~~~~~~~~~------~~~~~~~~-~- 141 (283)
++|.-|..+.|+..|+.+.+ ..--||+|+-..-.+ .-.+.+.+- ..+. .+ ...+..++ .
T Consensus 27 LlpV~gk~PlIe~~l~~L~~----------~Gi~~I~iv~~~~~~~~I~~~l~~~-~~~~-~~~~~~~~~~~~~~e~~~l 94 (369)
T TIGR02092 27 SLPFGGRYRLIDFPLSNMVN----------AGIRNVFIFFKNKERQSLFDHLGSG-REWD-LHRKRDGLFVFPYNDRDDL 94 (369)
T ss_pred ccccCCeeeEEEEEhhhhhc----------cCCCEEEEEeCCCcHHHHHHHHhCC-CCCC-cccccCcEEEEeccCCCCc
Confidence 44555554666666777665 233477777664332 333333210 0111 01 11222222 2
Q ss_pred -CCHHHHHHHHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 142 -HGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 142 -~gk~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
.|-+.++..+.+.. ..+.++++.+|...+.+ |.++++.+.+...
T Consensus 95 ~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~d-l~~ll~~h~~~~a 142 (369)
T TIGR02092 95 SEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNID-LKAVLKYHEETGK 142 (369)
T ss_pred ccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecC-HHHHHHHHHHcCC
Confidence 24455565565544 35789999999865544 6677776655433
No 253
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=25.94 E-value=2.6e+02 Score=24.25 Aligned_cols=34 Identities=26% Similarity=0.195 Sum_probs=23.0
Q ss_pred EEcCCCCCHHH-HHHHHHHHcC-CCEEEEEeCCCCC
Q 023346 136 ILLGRNHGKGE-AIRKGMLHSR-GELLLMLDADGAT 169 (283)
Q Consensus 136 ~~~~~~~gk~~-a~n~g~~~a~-~d~i~~~D~D~~~ 169 (283)
+......||.- +.|.|...++ |.=++++|.|..-
T Consensus 99 ~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~ 134 (322)
T TIGR03815 99 IGGRGGAGASTLAAALALAAARHGLRTLLVDADPWG 134 (322)
T ss_pred EcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 33344566765 7888887764 5668999999654
No 254
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.12 E-value=2.3e+02 Score=24.85 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=32.9
Q ss_pred ceEEEEEeCCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Q 023346 103 TYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELL 160 (283)
Q Consensus 103 ~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i 160 (283)
++|+++.||+++.. +...++++..+. ++.++-.+...+-..+....++..+-.+|
T Consensus 42 ~i~lv~~D~~~~p~~a~~~a~~li~~d---~v~~iiG~~~s~~~~a~~~~~~~~~ip~i 97 (357)
T cd06337 42 EVEIIVRDSQSNPNRAGLVAQELILTD---KVDLLLAGGTPDTTNPVSDQCEANGVPCI 97 (357)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHhcc---CccEEEecCCcchhhHHHHHHHHhCCCeE
Confidence 68999999987765 566777777653 36555544444444444344444433333
No 255
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=24.94 E-value=2.7e+02 Score=25.63 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCCHHHHH-HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346 119 RVAFDFVRKYTVDNVRIILLGRNHGKGEAI-RKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (283)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~-n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~ 182 (283)
+.++.+..+.+ ..+.+++.|+..||..-. ..+++.- +.++++|+|-.....-=..+++.+.
T Consensus 6 ~~L~~wL~e~~-~TFIvV~GPrGSGK~elV~d~~L~~r--~~vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 6 EQLKSWLNENP-NTFIVVQGPRGSGKRELVMDHVLKDR--KNVLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred HHHHHHHhcCC-CeEEEEECCCCCCccHHHHHHHHhCC--CCEEEEEChHhhhccChHHHHHHHH
Confidence 44555555555 357777888778877665 7776653 3488899988776433333444443
No 256
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=24.94 E-value=2.1e+02 Score=24.49 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=37.7
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCC--CCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 023346 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDK--SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL 138 (283)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~--~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~ 138 (283)
....+++++.++|.++ .+.+.+++... .+ ..+++++.||=..-.......+++..+++ ++.++..
T Consensus 29 e~~~ltl~ltcR~~~k-----ae~vc~~lk~f---~p~~~i~~~yvlvD~sNm~Sv~~A~~di~~rf~--~ld~iyl 95 (341)
T KOG1478|consen 29 ENVRLTLCLTCRNMSK-----AEAVCAALKAF---HPKSTIEVTYVLVDVSNMQSVFRASKDIKQRFQ--RLDYIYL 95 (341)
T ss_pred CceeEEEEEEeCChhH-----HHHHHHHHHHh---CCCceeEEEEEEEehhhHHHHHHHHHHHHHHhh--hccEEEE
Confidence 3456899999999875 34444544443 23 33566677765322233344556677777 5555443
No 257
>PF13707 RloB: RloB-like protein
Probab=24.93 E-value=3.4e+02 Score=21.17 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCcEEEEEcCCC--CCHHHHHHHHHHHcC--------CCEEEEEeCC-CCCChhhHHHHHHHH
Q 023346 120 VAFDFVRKYTVDNVRIILLGRN--HGKGEAIRKGMLHSR--------GELLLMLDAD-GATKVTDLEKLESQI 181 (283)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~--~gk~~a~n~g~~~a~--------~d~i~~~D~D-~~~~~~~l~~~~~~~ 181 (283)
..+.+........+.+...+.. .+...-+..+.+..+ .++.+++|.| .....+.+.++.+..
T Consensus 14 YF~~l~~~~~~~~~~i~~~~~~~~~~p~~lv~~a~~~~~~~~~~~~~d~v~~V~D~D~~~~~~~~~~~~~~~a 86 (183)
T PF13707_consen 14 YFKSLRKKRRRSNLDIKVIPSKGGSDPSSLVEKAKKKRKKKKNDNEYDEVWCVFDRDQNDFEHEKLEEAIKKA 86 (183)
T ss_pred HHHHHHHhcCCCceEEEEeecCCCCCHHHHHHHHHHHHhhhccccCCCEEEEEEeCCCCcCcHHHHHHHHHhc
Confidence 3444433332234444443322 344445555554443 4677788998 233444555555543
No 258
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.34 E-value=2.6e+02 Score=24.07 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=30.8
Q ss_pred CCceEEEEEeCCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 101 SFTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 101 ~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
..++|+++.||+++.. +...++++..+. .+..+..+...+-+.+...-++..
T Consensus 37 G~~ielv~~D~~~~p~~a~~~a~~li~~~---~v~aiiG~~~s~~~~a~~~~~~~~ 89 (332)
T cd06344 37 GKLLKVVIANDGNDPEIAKKVADELVKDP---EILGVVGHYSSDATLAALDIYQKA 89 (332)
T ss_pred CCeEEEEEECCCCChHHHHHHHHHHhccc---CceEEEcCCCcHHHHHHHHHHhhc
Confidence 4579999999987654 556777776543 466666543334444433333433
No 259
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.18 E-value=1.8e+02 Score=22.00 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=26.7
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC----cchHHHHHHH
Q 023346 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS----DGTKRVAFDF 124 (283)
Q Consensus 68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~----d~t~~~~~~~ 124 (283)
+.-...+.++.+.|.+.++...+ ..++||+--|+. |-|.+.++++
T Consensus 43 v~~~~~v~Dd~~~i~~~l~~~~~------------~~DliIttGG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 43 VSRLGIVPDDPEEIREILRKAVD------------EADVVLTTGGTGVGPRDVTPEALEEL 91 (144)
T ss_pred EEEEeecCCCHHHHHHHHHHHHh------------CCCEEEECCCCCCCCCccHHHHHHHh
Confidence 44455556666666666655543 568888887654 4455555544
No 260
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=24.02 E-value=2.7e+02 Score=21.91 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=20.1
Q ss_pred CCceEEEEEeCC--CC-cchHHHHHHHHHHcCCCcEEEEEc
Q 023346 101 SFTYEVLIIDDG--SS-DGTKRVAFDFVRKYTVDNVRIILL 138 (283)
Q Consensus 101 ~~~~eiivvdd~--s~-d~t~~~~~~~~~~~~~~~~~~~~~ 138 (283)
+..-.|+||.|+ |. |.+.+.++.+.+..+ +.+++.
T Consensus 75 ~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lg---Ipvl~h 112 (168)
T PF09419_consen 75 FGKDRVLIVSNSAGSSDDPDGERAEALEKALG---IPVLRH 112 (168)
T ss_pred CCCCeEEEEECCCCcccCccHHHHHHHHHhhC---CcEEEe
Confidence 333367777774 33 345666666666554 666544
No 261
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=23.41 E-value=2.9e+02 Score=21.59 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 023346 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL 138 (283)
Q Consensus 76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~ 138 (283)
.+....-..+.++...+.. ..+.+++++-|...--+.+.++++......+.+-++..
T Consensus 10 ~~~~g~N~Kv~nL~~~~~~------~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~ 66 (175)
T PF13506_consen 10 GPPRGCNPKVNNLAQGLEA------GAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTG 66 (175)
T ss_pred CCCCCCChHHHHHHHHHHh------hCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEe
Confidence 3344444556676654432 24788999988776667777777665544334555543
No 262
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=23.39 E-value=3.8e+02 Score=21.24 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=52.4
Q ss_pred EEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCC--HHHHHHHHHHHcCCC-EEEEEeCCCCCChhhHHHHHHHH
Q 023346 106 VLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHG--KGEAIRKGMLHSRGE-LLLMLDADGATKVTDLEKLESQI 181 (283)
Q Consensus 106 iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~g--k~~a~n~g~~~a~~d-~i~~~D~D~~~~~~~l~~~~~~~ 181 (283)
+|+|-||. .-....++..+++. ..|.+..+ .|.. .+.-+-..++.+.+| .++++|+--....+.=++.+..+
T Consensus 2 VIlvTDGD-~~A~ravE~aa~~i---GgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 2 VILVTDGD-EYAKRAVEIAAKNI---GGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred EEEEECCh-HHHHHHHHHHHHHh---CcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 78888863 22233344444443 47777764 2322 556667778888765 56667777777888888999999
Q ss_pred HHcCCccc
Q 023346 182 HAVGRKEY 189 (283)
Q Consensus 182 ~~~~~~~~ 189 (283)
..+|+..+
T Consensus 78 ~~h~~IeV 85 (180)
T PF14097_consen 78 ANHPDIEV 85 (180)
T ss_pred HcCCCceE
Confidence 99988643
No 263
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=22.77 E-value=1.8e+02 Score=27.44 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=48.4
Q ss_pred EEEEeCCC-CcchHHHHHHHHHHcCCCcEEEEEcCCCCC-HHHHHHHHHHHc------CCCEEEEEeCCCCCChhhHHHH
Q 023346 106 VLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHG-KGEAIRKGMLHS------RGELLLMLDADGATKVTDLEKL 177 (283)
Q Consensus 106 iivvdd~s-~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g-k~~a~n~g~~~a------~~d~i~~~D~D~~~~~~~l~~~ 177 (283)
|+||.||. +++..+.++++.. .++.++ |.| --+|...|++.. ..|-|+++++=+.-+-.-++.+
T Consensus 1 iv~VsN~~l~~~~~~~L~~~~~-------~vi~R~-N~GyDfgayk~gl~~~g~~~L~~~d~lil~NDS~~GP~~~l~~~ 72 (498)
T PF05045_consen 1 IVFVSNSPLSEEDREKLKDLCD-------KVIQRE-NEGYDFGAYKDGLEHLGWERLKDYDELILMNDSCFGPLFPLSEM 72 (498)
T ss_pred CEEEECCCCCHHHHHHHHHHHH-------HhEEec-cCCcCHHHHHHHHHHcCchhhcCCCeEEEECCEEEeeCccHHHH
Confidence 45666654 5556666666532 345544 777 456667777653 4688888887776666669999
Q ss_pred HHHHHHcCCc
Q 023346 178 ESQIHAVGRK 187 (283)
Q Consensus 178 ~~~~~~~~~~ 187 (283)
.+.+++...+
T Consensus 73 f~~~~~~~~D 82 (498)
T PF05045_consen 73 FERMEARDVD 82 (498)
T ss_pred HHHhccCCCe
Confidence 9998765443
No 264
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=22.68 E-value=1.8e+02 Score=17.26 Aligned_cols=9 Identities=11% Similarity=0.434 Sum_probs=3.8
Q ss_pred chhhHHHHH
Q 023346 3 FVCAIVEAL 11 (283)
Q Consensus 3 ~~~~~~~~~ 11 (283)
|+.++++..
T Consensus 4 wlt~iFsvv 12 (49)
T PF11044_consen 4 WLTTIFSVV 12 (49)
T ss_pred HHHHHHHHH
Confidence 444444333
No 265
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=22.64 E-value=1.7e+02 Score=22.55 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=24.9
Q ss_pred EEEcCCCCCHHH-HHHHHHHHcC-CCEEEEEeCCCCCC
Q 023346 135 IILLGRNHGKGE-AIRKGMLHSR-GELLLMLDADGATK 170 (283)
Q Consensus 135 ~~~~~~~~gk~~-a~n~g~~~a~-~d~i~~~D~D~~~~ 170 (283)
+.......||.. +.|.|...++ |.=++++|.|..-+
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~ 41 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGP 41 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 344445667775 7888877764 77888899996653
No 266
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=22.58 E-value=4.3e+02 Score=21.61 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=36.7
Q ss_pred CCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH-HHHHHcCCCEEEEEeCCCCC
Q 023346 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR-KGMLHSRGELLLMLDADGAT 169 (283)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n-~g~~~a~~d~i~~~D~D~~~ 169 (283)
..+++++.+|-.-++-..+..+ .| ++..++.+ ....+.+.. ..++.-...+++++|+|-..
T Consensus 95 Gq~~kvl~vdIdi~~~~p~a~e-----~p--~i~f~egs-s~dpai~eqi~~~~~~y~kIfvilDsdHs~ 156 (237)
T COG3510 95 GQPFKVLGVDIDIKPLDPAARE-----VP--DILFIEGS-STDPAIAEQIRRLKNEYPKIFVILDSDHSM 156 (237)
T ss_pred CCCceEEEEecccCcCChhhhc-----CC--CeEEEeCC-CCCHHHHHHHHHHhcCCCcEEEEecCCchH
Confidence 4478999998765554443322 33 78888866 333333332 23333345899999999764
No 267
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.41 E-value=2.8e+02 Score=19.28 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhhc
Q 023346 22 LISAIIFEAYRRRD 35 (283)
Q Consensus 22 ~~~~~~~~~~~~~~ 35 (283)
++++.++.-+++++
T Consensus 46 l~VilwfvCC~kRk 59 (94)
T PF05393_consen 46 LLVILWFVCCKKRK 59 (94)
T ss_pred HHHHHHHHHHHHhh
Confidence 33333443444333
No 268
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=22.26 E-value=2.1e+02 Score=22.96 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=25.0
Q ss_pred EEEcCCCCCHHH-HHHHHHHHc--CCCEEEEEeCCCCC
Q 023346 135 IILLGRNHGKGE-AIRKGMLHS--RGELLLMLDADGAT 169 (283)
Q Consensus 135 ~~~~~~~~gk~~-a~n~g~~~a--~~d~i~~~D~D~~~ 169 (283)
+.......||+. +.|.|...+ .|.=++++|+|..-
T Consensus 40 v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 40 VTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 333344677775 888887766 48889999999764
No 269
>PF05073 Baculo_p24: Baculovirus P24 capsid protein; InterPro: IPR007765 The Culex nigripalpus NPV (Culex nigripalpus nucleopolyhedrovirus) protein p24 is associated with nucleocapsids of budded and polyhedra-derived virions [, ].; GO: 0019028 viral capsid
Probab=21.95 E-value=90 Score=24.74 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=13.6
Q ss_pred CCCCceEEEEEeCCCCc
Q 023346 99 DKSFTYEVLIIDDGSSD 115 (283)
Q Consensus 99 ~~~~~~eiivvdd~s~d 115 (283)
|+..++||+||.++..|
T Consensus 3 Y~~~~iEV~II~N~~~d 19 (182)
T PF05073_consen 3 YNSDPIEVFIIENDEGD 19 (182)
T ss_pred CCCCceEEEEEeCCCCC
Confidence 56679999999987654
No 270
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=21.90 E-value=3.3e+02 Score=23.57 Aligned_cols=75 Identities=7% Similarity=0.172 Sum_probs=48.5
Q ss_pred EEEEEeC--CCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc--CCCEEEEEeCCCCCChhhHHHHHHH
Q 023346 105 EVLIIDD--GSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGATKVTDLEKLESQ 180 (283)
Q Consensus 105 eiivvdd--~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a--~~d~i~~~D~D~~~~~~~l~~~~~~ 180 (283)
.+.++.. -|-|+|.++++.+..++| .+.......--.-..++..|++.. ..|+++++-+-.--..+.|.++...
T Consensus 159 ~l~~~tQTTls~ddt~~Iv~~l~~r~p--~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~ 236 (294)
T COG0761 159 KLAFVTQTTLSVDDTAEIVAALKERFP--KIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKR 236 (294)
T ss_pred cEEEEeeeecCHHHHHHHHHHHHHhCc--cccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHH
Confidence 4555543 356788888888888887 444433322233445556666553 4789999888777777777777665
Q ss_pred H
Q 023346 181 I 181 (283)
Q Consensus 181 ~ 181 (283)
.
T Consensus 237 ~ 237 (294)
T COG0761 237 H 237 (294)
T ss_pred h
Confidence 5
No 271
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=21.61 E-value=3.1e+02 Score=24.30 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=48.9
Q ss_pred ceEEEEEeCC--CCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCCh
Q 023346 103 TYEVLIIDDG--SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKV 171 (283)
Q Consensus 103 ~~eiivvdd~--s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~ 171 (283)
.+++++|||= +.+++...++++..+.. .+.++..+ .+-..++..-++....+-|+.+-++-.+.+
T Consensus 26 gy~v~~vDNl~n~~~~sl~r~~~l~~~~~--~v~f~~~D--l~D~~~L~kvF~~~~fd~V~Hfa~~~~vge 92 (343)
T KOG1371|consen 26 GYGVVIVDNLNNSYLESLKRVRQLLGEGK--SVFFVEGD--LNDAEALEKLFSEVKFDAVMHFAALAAVGE 92 (343)
T ss_pred CCcEEEEecccccchhHHHHHHHhcCCCC--ceEEEEec--cCCHHHHHHHHhhcCCceEEeehhhhccch
Confidence 7899999974 45667777777665433 66666654 667888999999999999999888877443
No 272
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=21.59 E-value=3.7e+02 Score=20.50 Aligned_cols=72 Identities=8% Similarity=0.124 Sum_probs=41.1
Q ss_pred ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHH
Q 023346 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180 (283)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~ 180 (283)
.++||-|+ .|.+.+.++++.++.+ +.+...+-.......+...+....-+..+++|.|..+-...+...+..
T Consensus 65 ~~~vV~Vs---~D~~~~~~~~f~~~~~---~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~ 136 (146)
T cd03008 65 QLALVYVS---MDQSEQQQESFLKDMP---KKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILR 136 (146)
T ss_pred CEEEEEEE---CCCCHHHHHHHHHHCC---CCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHH
Confidence 59999996 3444555666766654 222111111112223333333345699999999988876666655544
No 273
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=21.55 E-value=4.4e+02 Score=21.30 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCC---CCcc-hHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHH
Q 023346 78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG---SSDG-TKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGML 153 (283)
Q Consensus 78 ~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~---s~d~-t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~ 153 (283)
+..+...|+-....+... ..+..-||+|+-.+ ++.+ -.+.++.+.++.- ++.++... +--.-+..-.+
T Consensus 79 ~~SLqN~Le~A~~~L~~~---p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~~~I--rvsvI~la---aEv~I~k~i~~ 150 (193)
T PF04056_consen 79 EPSLQNGLEMARSSLKHM---PSHGSREILVIFGSLTTCDPGDIHETIESLKKENI--RVSVISLA---AEVYICKKICK 150 (193)
T ss_pred ChhHHHHHHHHHHHHhhC---ccccceEEEEEEeecccCCchhHHHHHHHHHHcCC--EEEEEEEh---HHHHHHHHHHH
Confidence 344555555555555543 24556799887632 2222 3366666666544 67777654 44455556667
Q ss_pred HcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 154 HSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 154 ~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
.+.|.|-+.+|. +.++.++..+...|.
T Consensus 151 ~T~G~y~V~lde------~H~~~lL~~~~~PP~ 177 (193)
T PF04056_consen 151 ETGGTYGVILDE------DHFKELLMEHVPPPP 177 (193)
T ss_pred hhCCEEEEecCH------HHHHHHHHhhCCCCc
Confidence 778999988876 456777666654443
No 274
>PF15050 SCIMP: SCIMP protein
Probab=21.32 E-value=3.4e+02 Score=20.04 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC--------CeeccCCCCCCCCCCCCCCCCCCc
Q 023346 4 VCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEA--------PAIFEDPSSLKQVPCPSVTDPAEK 66 (283)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~p 66 (283)
+|.++...++++.+++-+++..+.....|+.+...-.++ +.-+.+-...++...|+..+...+
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEkmYENv~n~~~~~LPpLPPRg~~ 78 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEKMYENVLNQSPVQLPPLPPRGSP 78 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccchhhhcccHHHHHHHhhcCCcCCCCCCCCCCCC
No 275
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=21.29 E-value=3.5e+02 Score=23.30 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=25.1
Q ss_pred CCceEEEEEeCCCCcc-hHHHHHHHHHHcCCCcEEEEEcC
Q 023346 101 SFTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLG 139 (283)
Q Consensus 101 ~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~ 139 (283)
..++|+++.||+++.. ..+.++++..+. ++..+..+
T Consensus 37 G~~v~l~~~D~~~~p~~a~~~~~~l~~~~---~V~aviG~ 73 (334)
T cd06327 37 GRPIELVVADHQNKADVAAAKAREWIDRD---GVDMIVGG 73 (334)
T ss_pred CeEEEEEEecCCCCchHHHHHHHHHHhhc---CceEEECC
Confidence 4479999999998765 456677776543 46666654
No 276
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=21.24 E-value=3e+02 Score=23.85 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=28.7
Q ss_pred CCceEEEEEeCCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 101 SFTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 101 ~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
..++|+++.||+++.. +...++++..+. ++.++......+-..+....++..
T Consensus 38 Gr~v~lv~~D~~~~p~~a~~~~~~Li~~~---~V~aiiG~~~s~~~~a~~~~~~~~ 90 (334)
T cd06356 38 GREVELVDYDTQSDNERYQQYAQRLALQD---KVDVVWGGISSASREAIRPIMDRT 90 (334)
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHhC---CCCEEEeCcchHHHHHHHHHHHhc
Confidence 3468888888876554 456666666543 355555543344444444334333
No 277
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=21.21 E-value=83 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHH-cCCCEEEEEeCCCCCC
Q 023346 142 HGKGEAIRKGMLH-SRGELLLMLDADGATK 170 (283)
Q Consensus 142 ~gk~~a~n~g~~~-a~~d~i~~~D~D~~~~ 170 (283)
..|..++..+++. -+.+||+++|+|..+.
T Consensus 61 W~K~~~lr~~m~~~P~~~wv~~lD~Dali~ 90 (239)
T PF05637_consen 61 WAKIPALRAAMKKYPEAEWVWWLDSDALIM 90 (239)
T ss_dssp HTHHHHHHHHHHH-TT-SEEEEE-TTEEE-
T ss_pred hHHHHHHHHHHHhCCCCCEEEEEcCCeEEE
Confidence 3488888888866 6789999999998873
No 278
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=21.14 E-value=3.6e+02 Score=20.14 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC-cchHHHHHHHHHHcCCCcEEEEEc
Q 023346 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS-DGTKRVAFDFVRKYTVDNVRIILL 138 (283)
Q Consensus 77 e~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~ 138 (283)
....+...|+..+... ..+...-.|+++-||.. ++..++++....... .+++...
T Consensus 76 G~t~l~~aL~~a~~~~-----~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~~--~~~i~~~ 131 (155)
T PF13768_consen 76 GGTDLLAALRAALALL-----QRPGCVRAIILLTDGQPVSGEEEILDLVRRARG--HIRIFTF 131 (155)
T ss_pred CCccHHHHHHHHHHhc-----ccCCCccEEEEEEeccCCCCHHHHHHHHHhcCC--CceEEEE
Confidence 3445556666665532 12445678888888884 445555555443323 4555544
No 279
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=21.00 E-value=4.1e+02 Score=20.72 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=35.4
Q ss_pred CCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCC
Q 023346 100 KSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGAT 169 (283)
Q Consensus 100 ~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~ 169 (283)
...++|||+| |+|.+.+-...+....+ ..-..+... -.+..-+-.=....+=+-+.++..|...
T Consensus 65 ~~~~fEVvfV---S~D~~~~~~~~y~~~~~-~~W~~iPf~--d~~~~~l~~ky~v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 65 NAAPFEVVFV---SSDRDEESLDEYMLEHH-GDWLAIPFG--DDLIQKLSEKYEVKGIPALVILKPDGTV 128 (157)
T ss_pred cCCceEEEEE---ecCCCHHHHHHHHHhcC-CCeEEecCC--CHHHHHHHHhcccCcCceeEEecCCCCE
Confidence 4558999999 67777777777666544 133333321 1122222222223445778888887744
No 280
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=20.99 E-value=3.1e+02 Score=19.34 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=35.6
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (283)
Q Consensus 77 e~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a 155 (283)
.++.+.++++.+++ .+.+=||++...--+.-.+.+++...+...|-+..+ |.+.|. ..+..-++.|
T Consensus 28 ~~ee~~~~l~~l~~----------~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~I--P~~~~~-~~i~~~v~ra 93 (100)
T PRK02228 28 DDEKLDEAVEEVLE----------DDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTL--GGGGGS-GGLREKIKRA 93 (100)
T ss_pred CHHHHHHHHHHHhh----------CCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEE--CCCccc-hHHHHHHHHH
Confidence 33446677777654 446889999876555556666664433332233344 434443 2344444444
No 281
>TIGR03291 methan_mark_17 putative methanogenesis marker protein 17. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.91 E-value=4.5e+02 Score=21.13 Aligned_cols=27 Identities=4% Similarity=0.077 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346 156 RGELLLMLDADGATKVTDLEKLESQIH 182 (283)
Q Consensus 156 ~~d~i~~~D~D~~~~~~~l~~~~~~~~ 182 (283)
.+.-++|+-++..+.++|+.++.+.++
T Consensus 157 ~~~~fv~vASE~~l~~ewi~~a~~~~~ 183 (185)
T TIGR03291 157 EDNRFVFVASEETLEDEWIDEAFELID 183 (185)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356678999999999999998776554
No 282
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=20.77 E-value=3.7e+02 Score=23.20 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=30.3
Q ss_pred CceEEEEEeCCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHH
Q 023346 102 FTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLH 154 (283)
Q Consensus 102 ~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~ 154 (283)
.++|+++.||+++.. ....++++..+. .+..+..+...+-..+.-..++.
T Consensus 40 ~~i~lv~~D~~~~p~~a~~~~~~li~~~---~V~avvG~~~S~~~~a~~~~~~~ 90 (333)
T cd06328 40 RPIEVIVKDDAGNPEVAVSLARELIGDD---GVDILVGSTSSGVALAVLPVAEE 90 (333)
T ss_pred EEEEEEEecCCCChHHHHHHHHHHHHhc---CCeEEEccCCcHHHHHHHHHHHH
Confidence 479999999988765 456677776654 35555554344444444333333
No 283
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=20.61 E-value=6.7e+02 Score=23.05 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=58.6
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (283)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (283)
+..|.|=+--...+|-..+...++.+.+ .+|...+++-- .|+...+.+++. ++ ..+.+...| .
T Consensus 47 ~~~p~vWiHaaSVGEv~a~~pLv~~l~~---------~~P~~~ilvTt--~T~Tg~e~a~~~---~~-~~v~h~YlP--~ 109 (419)
T COG1519 47 PEGPLVWIHAASVGEVLAALPLVRALRE---------RFPDLRILVTT--MTPTGAERAAAL---FG-DSVIHQYLP--L 109 (419)
T ss_pred CCCCeEEEEecchhHHHHHHHHHHHHHH---------hCCCCCEEEEe--cCccHHHHHHHH---cC-CCeEEEecC--c
Confidence 3456677777778887666666666554 45566666642 355556666544 33 124443333 5
Q ss_pred CHHHHHHHHHHHcCCCEEEEEeCCCCC
Q 023346 143 GKGEAIRKGMLHSRGELLLMLDADGAT 169 (283)
Q Consensus 143 gk~~a~n~g~~~a~~d~i~~~D~D~~~ 169 (283)
-...+.|.-+++-+-+.++++.++..+
T Consensus 110 D~~~~v~rFl~~~~P~l~Ii~EtElWP 136 (419)
T COG1519 110 DLPIAVRRFLRKWRPKLLIIMETELWP 136 (419)
T ss_pred CchHHHHHHHHhcCCCEEEEEeccccH
Confidence 567788888999999999999998875
No 284
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=20.61 E-value=2.9e+02 Score=20.36 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHHHHHHHcCC-CcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeC-CCCCChhhHH
Q 023346 120 VAFDFVRKYTV-DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDA-DGATKVTDLE 175 (283)
Q Consensus 120 ~~~~~~~~~~~-~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~-D~~~~~~~l~ 175 (283)
+++++++.++. .++.++... . ...+..-.....|.++|+|| +.--+|+.+.
T Consensus 3 v~~~L~~~~~~~~~v~vid~g-t----~~~~l~~~l~~~d~viiVDA~~~g~~PG~v~ 55 (134)
T TIGR00140 3 LVEALQQRYAFPDNVTLLDGG-T----QGLYLLPLIESADRLIILDAVDYGLEPGTLY 55 (134)
T ss_pred HHHHHHHhCCCCCCeEEEecC-c----cHHHHHHHHhcCCeEEEEecccCCCCCceEE
Confidence 45566655432 257766543 1 12333333456788999996 3334555543
No 285
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=20.45 E-value=3.5e+02 Score=19.76 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=41.7
Q ss_pred CCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc--CC-CEEEEEeCCCCCChh
Q 023346 100 KSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RG-ELLLMLDADGATKVT 172 (283)
Q Consensus 100 ~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a--~~-d~i~~~D~D~~~~~~ 172 (283)
...++|++-.-||.+....+.......... ....-.-.+...|=..+...+++++ ++ ++++++.+|..+.++
T Consensus 24 ~~~~~~~~~Avd~~~~~~~~~~~~~~~~~~-~~~~~~l~~gEiGC~lSH~~~w~~~~~~~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 24 LGLDFEFFDAVDGKDLSEEELAALYDALFL-PRYGRPLTPGEIGCFLSHYKLWQKIVESNLEYALILEDDAILDPD 98 (128)
T ss_pred cCCCeEEEeccccccCCHHHHHHHhHHHhh-hhcCCCCChhhHHHHHHHHHHHHHHHHcCCCeEEEEccCcEECCC
Confidence 456899998889888776654433211000 0000001112345444555555553 44 999999999999888
No 286
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=20.44 E-value=86 Score=26.44 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=24.6
Q ss_pred cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346 155 SRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (283)
Q Consensus 155 a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 186 (283)
...+|.+++|+|+.+..+.|.+++..+.....
T Consensus 85 ~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~ 116 (252)
T PF02434_consen 85 SDKDWFCFADDDTYVNVENLRRLLSKYDPSEP 116 (252)
T ss_dssp HT-SEEEEEETTEEE-HHHHHHHHTTS-TTS-
T ss_pred CCceEEEEEeCCceecHHHHHHHHhhCCCccC
Confidence 45699999999999999999999998865433
No 287
>PLN00176 galactinol synthase
Probab=20.43 E-value=2.3e+02 Score=25.10 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=15.7
Q ss_pred HHcCCCEEEEEeCCCCCChh
Q 023346 153 LHSRGELLLMLDADGATKVT 172 (283)
Q Consensus 153 ~~a~~d~i~~~D~D~~~~~~ 172 (283)
+....|-++++|+|..+..+
T Consensus 109 ~l~~ydkvlyLDaD~lv~~n 128 (333)
T PLN00176 109 EFVEYSKMIYLDGDIQVFEN 128 (333)
T ss_pred cccccceEEEecCCEEeecC
Confidence 44568899999999998543
No 288
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=20.40 E-value=4.6e+02 Score=21.06 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCHHH-HHHHHHHHc-CC------CEEEEEeCCCCCChhhHHHHHHHH
Q 023346 132 NVRIILLGRNHGKGE-AIRKGMLHS-RG------ELLLMLDADGATKVTDLEKLESQI 181 (283)
Q Consensus 132 ~~~~~~~~~~~gk~~-a~n~g~~~a-~~------d~i~~~D~D~~~~~~~l~~~~~~~ 181 (283)
.+..+..+...||.. +++.+...+ .+ .-++++|.+..+++..+.++...+
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~ 77 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRF 77 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHh
Confidence 455666655666654 444444332 23 566777777766666666665543
No 289
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=20.39 E-value=1.8e+02 Score=24.53 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCHHH-HHHHHHHHc-C-CCEEEEEeCCCCCCh
Q 023346 133 VRIILLGRNHGKGE-AIRKGMLHS-R-GELLLMLDADGATKV 171 (283)
Q Consensus 133 ~~~~~~~~~~gk~~-a~n~g~~~a-~-~d~i~~~D~D~~~~~ 171 (283)
+.+. .....||.. +.|.|...+ + |.=++++|.|-....
T Consensus 5 Iav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 5 IAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred EEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 4455 566678885 999999888 3 878999999988753
No 290
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=20.38 E-value=3.5e+02 Score=19.70 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 023346 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG 139 (283)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~ 139 (283)
+++++-|.-.+..++.+.++++.++++ .+..++..+
T Consensus 59 ~v~~v~vs~d~~~d~~~~~~~~~~~~~-~~~~~l~~~ 94 (142)
T cd02968 59 DVQVVFISVDPERDTPEVLKAYAKAFG-PGWIGLTGT 94 (142)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhC-CCcEEEECC
Confidence 588888864444345666777777664 356666654
No 291
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=20.36 E-value=8.2e+02 Score=23.96 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=42.6
Q ss_pred eEEEEEeCCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCC---CC-HHH-HHHHHHHHcCCCEEEEEeCCCCCChhhHHHH
Q 023346 104 YEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRN---HG-KGE-AIRKGMLHSRGELLLMLDADGATKVTDLEKL 177 (283)
Q Consensus 104 ~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~~~---~g-k~~-a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~ 177 (283)
..+.++-..+.+. +.+.+++-.+.+. .+-+...... .. |.. .+..+....+.+|++-+|+|..+..+.|-+.
T Consensus 419 v~~rFvVG~s~n~~l~~~L~~Ea~~yg--DIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~ 496 (636)
T PLN03133 419 VAVRFFVGLHKNQMVNEELWNEARTYG--DIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLAS 496 (636)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHcC--CeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHH
Confidence 4455554444444 3345555556666 5555444322 22 332 2334444457899999999999988876665
Q ss_pred HH
Q 023346 178 ES 179 (283)
Q Consensus 178 ~~ 179 (283)
++
T Consensus 497 L~ 498 (636)
T PLN03133 497 LK 498 (636)
T ss_pred HH
Confidence 54
Done!