Query 023348
Match_columns 283
No_of_seqs 288 out of 1731
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 1.5E-44 3.2E-49 329.7 28.1 214 66-282 64-331 (365)
2 KOG0697 Protein phosphatase 1B 100.0 9.4E-45 2E-49 307.2 19.1 217 63-282 18-292 (379)
3 PTZ00224 protein phosphatase 2 100.0 8.6E-43 1.9E-47 319.2 26.1 209 63-282 18-272 (381)
4 COG0631 PTC1 Serine/threonine 100.0 2E-41 4.3E-46 297.9 20.1 207 64-282 5-253 (262)
5 PF00481 PP2C: Protein phospha 100.0 1.6E-41 3.4E-46 298.1 19.0 204 68-273 1-254 (254)
6 KOG0698 Serine/threonine prote 100.0 2.9E-40 6.3E-45 299.6 25.4 215 68-283 41-306 (330)
7 PRK14559 putative protein seri 100.0 1.9E-36 4.1E-41 291.8 23.9 208 65-282 373-636 (645)
8 cd00143 PP2Cc Serine/threonine 100.0 9E-36 2E-40 259.8 25.2 209 68-280 2-254 (254)
9 smart00332 PP2Cc Serine/threon 100.0 4.2E-35 9E-40 256.3 25.3 209 65-278 4-255 (255)
10 KOG0699 Serine/threonine prote 100.0 3.9E-36 8.6E-41 263.0 16.5 158 123-282 327-504 (542)
11 KOG0700 Protein phosphatase 2C 100.0 1.5E-28 3.2E-33 219.9 15.5 163 107-269 176-379 (390)
12 KOG1323 Serine/threonine phosp 99.9 1.7E-24 3.7E-29 188.3 16.3 175 105-281 225-487 (493)
13 KOG1379 Serine/threonine prote 99.8 2.8E-19 6.1E-24 155.6 17.8 131 126-279 167-329 (330)
14 KOG0618 Serine/threonine phosp 99.8 8.2E-20 1.8E-24 177.4 11.9 211 65-282 520-773 (1081)
15 PF13672 PP2C_2: Protein phosp 99.7 9.8E-17 2.1E-21 136.7 13.4 145 72-249 3-193 (212)
16 smart00331 PP2C_SIG Sigma fact 99.7 3.2E-15 7E-20 125.5 17.8 154 68-265 5-192 (193)
17 TIGR02865 spore_II_E stage II 99.6 5.1E-14 1.1E-18 140.4 18.8 173 64-280 549-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 7E-12 1.5E-16 105.0 19.5 119 125-281 59-193 (193)
19 COG2208 RsbU Serine phosphatas 98.4 2.5E-05 5.5E-10 72.2 18.8 118 126-281 231-366 (367)
20 PF09436 DUF2016: Domain of un 60.6 5.2 0.00011 27.9 1.3 19 223-241 26-44 (72)
21 COG3700 AphA Acid phosphatase 48.2 50 0.0011 27.5 5.3 47 222-268 69-130 (237)
22 COG3315 O-Methyltransferase in 41.1 52 0.0011 29.5 4.9 90 147-249 104-194 (297)
23 PF06972 DUF1296: Protein of u 36.2 45 0.00098 22.2 2.7 26 237-262 18-44 (60)
24 COG2168 DsrH Uncharacterized c 34.4 22 0.00049 26.2 1.2 30 220-249 21-50 (96)
25 COG5518 Bacteriophage capsid p 29.1 31 0.00068 31.8 1.5 134 134-281 189-330 (492)
26 PF01436 NHL: NHL repeat; Int 24.8 1.3E+02 0.0028 16.3 3.3 21 133-153 8-28 (28)
27 PF05785 CNF1: Rho-activating 23.6 1E+02 0.0022 27.4 3.6 25 123-148 129-153 (281)
28 cd08325 CARD_CASP1-like Caspas 22.5 1.9E+02 0.0041 20.5 4.3 33 236-268 29-61 (83)
29 TIGR03735 PRTRC_A PRTRC system 20.1 58 0.0013 27.3 1.3 45 223-267 25-90 (192)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.5e-44 Score=329.69 Aligned_cols=214 Identities=38% Similarity=0.588 Sum_probs=178.8
Q ss_pred ceEEEEEeeecCCCCCcceEEEeeccc--------CCeeeEEEEEEe---------------------------------
Q 023348 66 KFSYGYSTFKGKRSSMEDFYETSLSEV--------DGQMVAFFGVYD--------------------------------- 104 (283)
Q Consensus 66 ~~~~~~~s~~G~R~~neD~~~~~~~~~--------~~~~~~l~~V~D--------------------------------- 104 (283)
.++++.+|++|.|+.|||++++..+.. ...+..||||||
T Consensus 64 ~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al 143 (365)
T PLN03145 64 VVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVV 143 (365)
T ss_pred ceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 478999999999999999987643221 122358999999
Q ss_pred hHHHHHHHHHHHhhhh-CCCCCCCceEEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCCHHHHHHHHHhCCeE
Q 023348 105 VEVFKKTDENYLSEEK-GQHKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEEAGGFV 183 (283)
Q Consensus 105 ~~a~~~~~~~~~~~~~-~~~~~~GtT~~~~~i~~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~~ 183 (283)
.++|.++++.+.+... .....||||++++++.++++|++||||||+|++++|++++||+||++.++.|++||.+.||.+
T Consensus 144 ~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v 223 (365)
T PLN03145 144 SSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYV 223 (365)
T ss_pred HHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCce
Confidence 3345556666655432 233459999999999999999999999999999999999999999999999999999999988
Q ss_pred EecCceeecCccccccccccccccc-------ccccCcceEEEEecCC-cEEEEEcCCCCCCCCHHHHHHHHH----ccC
Q 023348 184 IWAGTWRVGGVLAVSRAFGDRLLKQ-------YVVAEPEIQEEEIDGV-DFIIIASDGLWNVISNRDAVAMVE----HIT 251 (283)
Q Consensus 184 ~~~~~~~~~g~~~ltralG~~~~k~-------~~~~~p~i~~~~l~~~-d~llL~SDGl~d~l~~~ei~~i~~----~~~ 251 (283)
. ..+++|.+++||+|||..+|. .++++|++..+++.++ +|||||||||||+++++++.++++ ...
T Consensus 224 ~---~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~ 300 (365)
T PLN03145 224 Y---DGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHN 300 (365)
T ss_pred e---cceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCC
Confidence 5 347788889999999987763 3678999999999954 467799999999999999866553 456
Q ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEEEecC
Q 023348 252 DAEAASRKLIKEAYARGSSDNITCVVVRFEN 282 (283)
Q Consensus 252 ~~~~~a~~L~~~A~~~g~~DNiTvivv~~~~ 282 (283)
+|+++|+.|++.|+.+|+.||+|||||+|+.
T Consensus 301 ~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~ 331 (365)
T PLN03145 301 DPVMCSKELVDEALKRKSGDNLAVVVVCFQS 331 (365)
T ss_pred CHHHHHHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 8999999999999999999999999999974
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-45 Score=307.19 Aligned_cols=217 Identities=35% Similarity=0.525 Sum_probs=187.1
Q ss_pred CCCceEEEEEeeecCCCCCcceEEEeecccCC-eeeEEEEEEe---------------------hHHHH-----------
Q 023348 63 RTAKFSYGYSTFKGKRSSMEDFYETSLSEVDG-QMVAFFGVYD---------------------VEVFK----------- 109 (283)
Q Consensus 63 ~~~~~~~~~~s~~G~R~~neD~~~~~~~~~~~-~~~~l~~V~D---------------------~~a~~----------- 109 (283)
+...++||..|++|||-.|||++.+.....++ .++++|+||| .+.|.
T Consensus 18 ~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~ 97 (379)
T KOG0697|consen 18 EGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENV 97 (379)
T ss_pred cCCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHH
Confidence 45789999999999999999999876544333 3789999999 11122
Q ss_pred ---------HHHHHHHhh--hhCCCCCCCceEEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCCHHHHHHHHH
Q 023348 110 ---------KTDENYLSE--EKGQHKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEE 178 (283)
Q Consensus 110 ---------~~~~~~~~~--~~~~~~~~GtT~~~~~i~~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~ 178 (283)
+.++.+... ......++|||++.+++...++|++|+||||++++|+|+.+.-|+||+|..+.|++||+.
T Consensus 98 ~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqn 177 (379)
T KOG0697|consen 98 EKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQN 177 (379)
T ss_pred HhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhc
Confidence 222221111 122334599999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCceeecCcccccccccccccc---------cccccCcceEEEEec-CCcEEEEEcCCCCCCCCHHHHHHHHH
Q 023348 179 AGGFVIWAGTWRVGGVLAVSRAFGDRLLK---------QYVVAEPEIQEEEID-GVDFIIIASDGLWNVISNRDAVAMVE 248 (283)
Q Consensus 179 ~gg~~~~~~~~~~~g~~~ltralG~~~~k---------~~~~~~p~i~~~~l~-~~d~llL~SDGl~d~l~~~ei~~i~~ 248 (283)
+||.++ ..|++|.++++|+|||++|| |+++++|++...... +++||||+||||||+++++|+.++++
T Consensus 178 AGGSVM---IqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~ 254 (379)
T KOG0697|consen 178 AGGSVM---IQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVK 254 (379)
T ss_pred CCCeEE---EEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHH
Confidence 999998 56999999999999999998 569999999988877 88999999999999999999999998
Q ss_pred c----cCCHHHHHHHHHHHHHhCCCCCceEEEEEEecC
Q 023348 249 H----ITDAEAASRKLIKEAYARGSSDNITCVVVRFEN 282 (283)
Q Consensus 249 ~----~~~~~~~a~~L~~~A~~~g~~DNiTvivv~~~~ 282 (283)
. ..+..++|...++.++-+|++||+|+|+|.|.+
T Consensus 255 sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~ 292 (379)
T KOG0697|consen 255 SRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPG 292 (379)
T ss_pred hhheecccHHHHHHHHHHHHHhccCccCceEEEEecCC
Confidence 7 678999999999999999999999999999864
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=8.6e-43 Score=319.19 Aligned_cols=209 Identities=40% Similarity=0.637 Sum_probs=177.0
Q ss_pred CCCceEEEEEeeecCCCCCcceEEEeecccCCeeeEEEEEEe-------------------------------hHHHHHH
Q 023348 63 RTAKFSYGYSTFKGKRSSMEDFYETSLSEVDGQMVAFFGVYD-------------------------------VEVFKKT 111 (283)
Q Consensus 63 ~~~~~~~~~~s~~G~R~~neD~~~~~~~~~~~~~~~l~~V~D-------------------------------~~a~~~~ 111 (283)
.+..+.+++.+++|+|++|||++++... ....+||||| .++|..+
T Consensus 18 ~~~~~~~g~~s~~G~R~~nED~~~v~~~----~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~~~~~~l~~a~~~~ 93 (381)
T PTZ00224 18 GNSIFRCASACVNGYRESMEDAHLLYLT----DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEPMTDERMEELCLEI 93 (381)
T ss_pred CCccEEEEEEeCCCCCCCCCCeeEeccC----CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 4578999999999999999999876432 2336999999 1233334
Q ss_pred HHHHHhhhhCCCCCCCceEEEEEEE-CCeEEEEEeccccEEEEeCCeeeecCCCCCCCCHHHHHHHHHhCCeEEecCcee
Q 023348 112 DENYLSEEKGQHKDAGSTASTAVLL-GDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEEAGGFVIWAGTWR 190 (283)
Q Consensus 112 ~~~~~~~~~~~~~~~GtT~~~~~i~-~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~~~~~~~~~ 190 (283)
++.+++. ...+|||++++++. +++++++||||||+|++|+|++++||+||++.++.|++||.+.||.+. ..|
T Consensus 94 d~~i~~~----~~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~---~~R 166 (381)
T PTZ00224 94 DEEWMDS----GREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVV---SNR 166 (381)
T ss_pred HHHHHhc----ccCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEec---ccc
Confidence 4444422 22469999998886 689999999999999999999999999999999999999999999885 347
Q ss_pred ecCccccccccccccccc---------ccccCcceEEEEecCCcEEEEEcCCCCC-CCCHHHHHHHHHc----cCCHHHH
Q 023348 191 VGGVLAVSRAFGDRLLKQ---------YVVAEPEIQEEEIDGVDFIIIASDGLWN-VISNRDAVAMVEH----ITDAEAA 256 (283)
Q Consensus 191 ~~g~~~ltralG~~~~k~---------~~~~~p~i~~~~l~~~d~llL~SDGl~d-~l~~~ei~~i~~~----~~~~~~~ 256 (283)
++|.+.+||+||+..+|. .++++|++..+.+.++|+|||||||||| +++++|+.+++.+ ..+++++
T Consensus 167 v~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~a 246 (381)
T PTZ00224 167 VDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSNDFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVV 246 (381)
T ss_pred ccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCCCEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHH
Confidence 888899999999976552 3568999999999999999999999999 8999999999863 4689999
Q ss_pred HHHHHHHHHhCCCCCceEEEEEEecC
Q 023348 257 SRKLIKEAYARGSSDNITCVVVRFEN 282 (283)
Q Consensus 257 a~~L~~~A~~~g~~DNiTvivv~~~~ 282 (283)
|+.|++.|+.+|+.||||||||++..
T Consensus 247 A~~Lv~~A~~rGs~DNITvIvV~~~~ 272 (381)
T PTZ00224 247 AGRVCDEAIRRGSKDNISCLIVQLKD 272 (381)
T ss_pred HHHHHHHHHhcCCCCCEEEEEEEeeC
Confidence 99999999999999999999999864
No 4
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-41 Score=297.89 Aligned_cols=207 Identities=31% Similarity=0.421 Sum_probs=173.5
Q ss_pred CCceEEEEEeeecC-CCCCcceEEEeecccCCeeeEEEEEEe--------------------------------------
Q 023348 64 TAKFSYGYSTFKGK-RSSMEDFYETSLSEVDGQMVAFFGVYD-------------------------------------- 104 (283)
Q Consensus 64 ~~~~~~~~~s~~G~-R~~neD~~~~~~~~~~~~~~~l~~V~D-------------------------------------- 104 (283)
...+.+++.|+.|. |.+|||++++..+..... ..||+|||
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~ 83 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEEL 83 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Confidence 46678899999999 899999999876433333 57999999
Q ss_pred -hHHHHHHHHHHHhhhh--CCCCCCCceEEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCCHHHHHHHHHhCC
Q 023348 105 -VEVFKKTDENYLSEEK--GQHKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEEAGG 181 (283)
Q Consensus 105 -~~a~~~~~~~~~~~~~--~~~~~~GtT~~~~~i~~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~gg 181 (283)
.+.+..+++.+..... ....+||||++++++.++++|+|||||||+|++|+|.++|||+||++.+..++.++...++
T Consensus 84 l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~ 163 (262)
T COG0631 84 LKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEE 163 (262)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHH
Confidence 1223333444444432 4567899999999999999999999999999999999999999999999888877644333
Q ss_pred eEEecCceeecCcccccccccccccccccccCcceEEEEecCCcEEEEEcCCCCCCCCHHHHHHHHHccCCHHHHHHHHH
Q 023348 182 FVIWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEEIDGVDFIIIASDGLWNVISNRDAVAMVEHITDAEAASRKLI 261 (283)
Q Consensus 182 ~~~~~~~~~~~g~~~ltralG~~~~k~~~~~~p~i~~~~l~~~d~llL~SDGl~d~l~~~ei~~i~~~~~~~~~~a~~L~ 261 (283)
.. .++..+++||+||+.. ...|++..+.++++|+||||||||||.++++++.++++...+|+++++.|+
T Consensus 164 ~~------~~~~~~~ltralG~~~-----~~~p~~~~~~~~~~d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li 232 (262)
T COG0631 164 AR------SHPRRNALTRALGDFD-----LLEPDITELELEPGDFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLI 232 (262)
T ss_pred HH------hCccchhhhhhcCCCc-----ccceeEEEEEcCCCCEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHH
Confidence 22 2345569999999983 379999999999999999999999999999999999998889999999999
Q ss_pred HHHHhCCCCCceEEEEEEecC
Q 023348 262 KEAYARGSSDNITCVVVRFEN 282 (283)
Q Consensus 262 ~~A~~~g~~DNiTvivv~~~~ 282 (283)
+.|+.+|+.||+|+|+|++..
T Consensus 233 ~~a~~~g~~DNiT~ilv~~~~ 253 (262)
T COG0631 233 ELALEGGGPDNITVVLVRLNG 253 (262)
T ss_pred HHHHhcCCCCceEEEEEEeec
Confidence 999999999999999999864
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.6e-41 Score=298.06 Aligned_cols=204 Identities=47% Similarity=0.699 Sum_probs=167.5
Q ss_pred EEEEEeeecCCCCCcceEEEeeccc---CCeeeEEEEEEe-----------------------------------hHHHH
Q 023348 68 SYGYSTFKGKRSSMEDFYETSLSEV---DGQMVAFFGVYD-----------------------------------VEVFK 109 (283)
Q Consensus 68 ~~~~~s~~G~R~~neD~~~~~~~~~---~~~~~~l~~V~D-----------------------------------~~a~~ 109 (283)
.+++.+..|+|+.|||++++..+.. ...+..+|+||| .++|.
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~ 80 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFL 80 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceee
Confidence 3688999999999999999876543 345789999999 33344
Q ss_pred H-HHHHHHhhhhC-CCCCCCceEEEEEEECCeEEEEEeccccEEEEeCCeee-ecCCCCCCCCHHHHHHHHHhCCeEEec
Q 023348 110 K-TDENYLSEEKG-QHKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAI-PLSIDHKPDRSDERQRIEEAGGFVIWA 186 (283)
Q Consensus 110 ~-~~~~~~~~~~~-~~~~~GtT~~~~~i~~~~l~ianvGDSR~yl~r~g~~~-~lT~DH~~~~~~e~~ri~~~gg~~~~~ 186 (283)
. +++.+...... ....+|||++++++.++++|+|||||||+|+++++... +||+||++.++.|+.||+++||.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~- 159 (254)
T PF00481_consen 81 AFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE- 159 (254)
T ss_dssp HHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE-
T ss_pred ecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc-
Confidence 4 44444432111 56789999999999999999999999999999999988 99999999999999999999999977
Q ss_pred CceeecCccccccccccccccc----ccccCcceEEEEecCC-cEEEEEcCCCCCCCCHHHHHHHHHccCC----HHHHH
Q 023348 187 GTWRVGGVLAVSRAFGDRLLKQ----YVVAEPEIQEEEIDGV-DFIIIASDGLWNVISNRDAVAMVEHITD----AEAAS 257 (283)
Q Consensus 187 ~~~~~~g~~~ltralG~~~~k~----~~~~~p~i~~~~l~~~-d~llL~SDGl~d~l~~~ei~~i~~~~~~----~~~~a 257 (283)
.+|+.|.+++||+|||..+|+ .++++|++..+++.++ +|||||||||||+++++|+.+++++..+ |+.+|
T Consensus 160 -~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a 238 (254)
T PF00481_consen 160 -NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAA 238 (254)
T ss_dssp -TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred -chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 679999999999999999998 8999999999999976 4999999999999999999999988544 89999
Q ss_pred HHHHHHHHhCCCCCce
Q 023348 258 RKLIKEAYARGSSDNI 273 (283)
Q Consensus 258 ~~L~~~A~~~g~~DNi 273 (283)
+.|++.|+.+|+.|||
T Consensus 239 ~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 239 EKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHhcCCCCCC
Confidence 9999999999999997
No 6
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-40 Score=299.56 Aligned_cols=215 Identities=52% Similarity=0.775 Sum_probs=185.3
Q ss_pred EEEEEeeecCCCCCcceEEEeeccc----CCe-eeEEEEEEe------------------------------------hH
Q 023348 68 SYGYSTFKGKRSSMEDFYETSLSEV----DGQ-MVAFFGVYD------------------------------------VE 106 (283)
Q Consensus 68 ~~~~~s~~G~R~~neD~~~~~~~~~----~~~-~~~l~~V~D------------------------------------~~ 106 (283)
..+.++.+|+|..|||++....... .+. ...+||||| .+
T Consensus 41 ~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 41 LGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred ceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 3455588888999999998765422 233 579999999 24
Q ss_pred HHH-HHHHHHHhhhhCCCCCCCceEEEEEEECC-eEEEEEeccccEEEEeCC-eeeecCCCCCCCCHHHHHHHHHhCCeE
Q 023348 107 VFK-KTDENYLSEEKGQHKDAGSTASTAVLLGD-RLLVANVGDSRVVASRAG-SAIPLSIDHKPDRSDERQRIEEAGGFV 183 (283)
Q Consensus 107 a~~-~~~~~~~~~~~~~~~~~GtT~~~~~i~~~-~l~ianvGDSR~yl~r~g-~~~~lT~DH~~~~~~e~~ri~~~gg~~ 183 (283)
+|. +++..+++. ......+|||++++++..+ ++|+||+|||||+++++| ..++||.||+|..+.|+.||+++||++
T Consensus 121 ~F~~~~D~~~~~~-~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v 199 (330)
T KOG0698|consen 121 AFLTKTDSEFLEK-REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRV 199 (330)
T ss_pred HHHHHHHHHHHhh-ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEE
Confidence 566 466666654 2224568888888888854 999999999999999766 799999999999999999999999999
Q ss_pred Eec-CceeecCcccccccccccccc-cccccCcceEEEEec-CCcEEEEEcCCCCCCCCHHHHHHHHHc----cCCHHHH
Q 023348 184 IWA-GTWRVGGVLAVSRAFGDRLLK-QYVVAEPEIQEEEID-GVDFIIIASDGLWNVISNRDAVAMVEH----ITDAEAA 256 (283)
Q Consensus 184 ~~~-~~~~~~g~~~ltralG~~~~k-~~~~~~p~i~~~~l~-~~d~llL~SDGl~d~l~~~ei~~i~~~----~~~~~~~ 256 (283)
.+. +.+|++|.++++|+|||..+| +.++++|++....+. .++||||+||||||+++++|++++++. ...+..+
T Consensus 200 ~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a 279 (330)
T KOG0698|consen 200 SNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAA 279 (330)
T ss_pred EEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHH
Confidence 854 458999999999999999999 889999999999999 588999999999999999999999998 5689999
Q ss_pred HHHHHHHHHhCCCCCceEEEEEEecCC
Q 023348 257 SRKLIKEAYARGSSDNITCVVVRFENS 283 (283)
Q Consensus 257 a~~L~~~A~~~g~~DNiTvivv~~~~s 283 (283)
+..|...|+.+++.||||||||.|..+
T Consensus 280 ~~~l~~~a~~~~s~DnitvvvV~l~~~ 306 (330)
T KOG0698|consen 280 AKLLATEALSRGSKDNITVVVVRLKSS 306 (330)
T ss_pred HHHHHHHHhhcCCCCCeEEEEEEecCc
Confidence 999999999999999999999999753
No 7
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.9e-36 Score=291.75 Aligned_cols=208 Identities=24% Similarity=0.320 Sum_probs=159.2
Q ss_pred CceEEEEEeeecC-CCCCcceEEEeecc-----cCC---eeeEEEEEEe-------------------------------
Q 023348 65 AKFSYGYSTFKGK-RSSMEDFYETSLSE-----VDG---QMVAFFGVYD------------------------------- 104 (283)
Q Consensus 65 ~~~~~~~~s~~G~-R~~neD~~~~~~~~-----~~~---~~~~l~~V~D------------------------------- 104 (283)
..+++++.|++|. |++|||++.+.... ..+ ....+|+|||
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~ 452 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDEL 452 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4688999999998 99999998764321 111 1246899999
Q ss_pred ------hHHHHHHHHHHHhhhhC----CCCCCCceEEEEEEECCeEEEEEeccccEEEE-eCCeeeecCCCCCCCCHHHH
Q 023348 105 ------VEVFKKTDENYLSEEKG----QHKDAGSTASTAVLLGDRLLVANVGDSRVVAS-RAGSAIPLSIDHKPDRSDER 173 (283)
Q Consensus 105 ------~~a~~~~~~~~~~~~~~----~~~~~GtT~~~~~i~~~~l~ianvGDSR~yl~-r~g~~~~lT~DH~~~~~~e~ 173 (283)
.++|..+|+.+.+.... ...+||||++++++.++++|++||||||+|++ |+|++++||+||++.+.
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~--- 529 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR--- 529 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH---
Confidence 12233445555443221 34569999999999999999999999999998 57899999999998753
Q ss_pred HHHHHhCCeEEecCceeecCcccccccccccccccccccCcceEEEEecCCcEEEEEcCCCCCC--CCH---HHHHHHHH
Q 023348 174 QRIEEAGGFVIWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEEIDGVDFIIIASDGLWNV--ISN---RDAVAMVE 248 (283)
Q Consensus 174 ~ri~~~gg~~~~~~~~~~~g~~~ltralG~~~~k~~~~~~p~i~~~~l~~~d~llL~SDGl~d~--l~~---~ei~~i~~ 248 (283)
+.+.| +.......+++.+.+||+||+...+ ..+|++..+.+.++|+||||||||||+ +.. +++..++.
T Consensus 530 --lv~~G--i~~~~a~~~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~gD~lLLCSDGL~D~~~ve~~~~~~l~~il~ 602 (645)
T PRK14559 530 --EIQRG--VEPQIAYARPDAYQLTQALGPRDNS---AIQPDIQFLEIEEDTLLLLCSDGLSDNDLLETHWQTHLLPLLS 602 (645)
T ss_pred --HHHhC--CCHHHHhcCcccceeeeccCCCCCC---cccceEEEEEcCCCCEEEEECCCCCCCcccchHHHHHHHHHHh
Confidence 23333 1111122345668999999986433 358999999999999999999999994 554 45667777
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCceEEEEEEecC
Q 023348 249 HITDAEAASRKLIKEAYARGSSDNITCVVVRFEN 282 (283)
Q Consensus 249 ~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~~~~ 282 (283)
...++++++++|++.|+.+|++||+|+|||+++.
T Consensus 603 ~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~ 636 (645)
T PRK14559 603 SSANLDQGLNKLIDLANQYNGHDNITAILVRLKV 636 (645)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEecc
Confidence 7788999999999999999999999999999864
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=9e-36 Score=259.83 Aligned_cols=209 Identities=45% Similarity=0.663 Sum_probs=174.9
Q ss_pred EEEEEeeecCCCCCcceEEEeecccCCeeeEEEEEEe--------------------------------------hHHHH
Q 023348 68 SYGYSTFKGKRSSMEDFYETSLSEVDGQMVAFFGVYD--------------------------------------VEVFK 109 (283)
Q Consensus 68 ~~~~~s~~G~R~~neD~~~~~~~~~~~~~~~l~~V~D--------------------------------------~~a~~ 109 (283)
.++..+..|.|+.|||++++...... .+..+|+||| ..+|.
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 80 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFL 80 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 45677777889999999988643221 2458999999 11122
Q ss_pred HHHHHHHhhhh--CCCCCCCceEEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCCHHHHHHHHHhCCeEEecC
Q 023348 110 KTDENYLSEEK--GQHKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEEAGGFVIWAG 187 (283)
Q Consensus 110 ~~~~~~~~~~~--~~~~~~GtT~~~~~i~~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~~~~~~ 187 (283)
.+++.+..... .....+|||++++++.+++++++|+||||+|++++++++++|.||++.++.++.|+...++.+.
T Consensus 81 ~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~--- 157 (254)
T cd00143 81 RADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS--- 157 (254)
T ss_pred HHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE---
Confidence 23333333322 2446799999999999999999999999999999999999999999999999999999988653
Q ss_pred ceeecCcccccccccccccccccccCcceEEEEe-cCCcEEEEEcCCCCCCCCHHHHHHHHHccC---CHHHHHHHHHHH
Q 023348 188 TWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEEI-DGVDFIIIASDGLWNVISNRDAVAMVEHIT---DAEAASRKLIKE 263 (283)
Q Consensus 188 ~~~~~g~~~ltralG~~~~k~~~~~~p~i~~~~l-~~~d~llL~SDGl~d~l~~~ei~~i~~~~~---~~~~~a~~L~~~ 263 (283)
..+.++.+.+||+||+..+|+....+|++..+.+ +++|+|||||||||+++++++|.+++.... +++++|+.|++.
T Consensus 158 ~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~ 237 (254)
T cd00143 158 NGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDL 237 (254)
T ss_pred eCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 2456677899999999988877788999999999 899999999999999999999999999876 799999999999
Q ss_pred HHhCCCCCceEEEEEEe
Q 023348 264 AYARGSSDNITCVVVRF 280 (283)
Q Consensus 264 A~~~g~~DNiTvivv~~ 280 (283)
|..+++.||+|+|++++
T Consensus 238 a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 238 ALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHhCCCCCCEEEEEEeC
Confidence 99999999999999975
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=4.2e-35 Score=256.31 Aligned_cols=209 Identities=51% Similarity=0.769 Sum_probs=174.3
Q ss_pred CceEEEEEeeecCCCCCcceEEEeecccCCeeeEEEEEEe-------------------------------------hHH
Q 023348 65 AKFSYGYSTFKGKRSSMEDFYETSLSEVDGQMVAFFGVYD-------------------------------------VEV 107 (283)
Q Consensus 65 ~~~~~~~~s~~G~R~~neD~~~~~~~~~~~~~~~l~~V~D-------------------------------------~~a 107 (283)
..+.++..+..|.|..|||++++..+. .....+|+||| .++
T Consensus 4 ~~~~~~~~~~~~~r~~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (255)
T smart00332 4 LGLRYGLSSMQGVRKPMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKA 81 (255)
T ss_pred CceeEEEecCCCCCCCCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHH
Confidence 446677777778899999999886432 13458999999 111
Q ss_pred HHHHHHHHHhhhhC--CCCCCCceEEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCCHHHHHHHHHhCCeEEe
Q 023348 108 FKKTDENYLSEEKG--QHKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEEAGGFVIW 185 (283)
Q Consensus 108 ~~~~~~~~~~~~~~--~~~~~GtT~~~~~i~~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~~~~ 185 (283)
+..+++.+.+.... ....+|||++++++.+++++++|+||||+|++|++++.+||+||++.+..|+.||.+.++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 161 (255)
T smart00332 82 FLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN 161 (255)
T ss_pred HHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEEC
Confidence 22223333332221 2356899999999999999999999999999999999999999999999999999999987643
Q ss_pred cCceeecCcccccccccccccccccccCcceEEEEe-cCCcEEEEEcCCCCCCCCHHHHHHHHHccC---CHHHHHHHHH
Q 023348 186 AGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEEI-DGVDFIIIASDGLWNVISNRDAVAMVEHIT---DAEAASRKLI 261 (283)
Q Consensus 186 ~~~~~~~g~~~ltralG~~~~k~~~~~~p~i~~~~l-~~~d~llL~SDGl~d~l~~~ei~~i~~~~~---~~~~~a~~L~ 261 (283)
+++++.+.+||++|+..+|+.+..+|++...++ .++|+|||||||||++++++++.+++.+.. ++.++|+.|+
T Consensus 162 ---~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l~ 238 (255)
T smart00332 162 ---GRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRLI 238 (255)
T ss_pred ---CeECCeEecccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 367777899999999988888889999999996 899999999999999999999999998865 6999999999
Q ss_pred HHHHhCCCCCceEEEEE
Q 023348 262 KEAYARGSSDNITCVVV 278 (283)
Q Consensus 262 ~~A~~~g~~DNiTvivv 278 (283)
+.|..+++.||+|+|||
T Consensus 239 ~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 239 DLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHcCCCCCeEEEEC
Confidence 99999999999999985
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-36 Score=262.96 Aligned_cols=158 Identities=39% Similarity=0.666 Sum_probs=146.0
Q ss_pred CCCCCceEEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCCHHHHHHHHHhCCeEEecCceeecCccccccccc
Q 023348 123 HKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEEAGGFVIWAGTWRVGGVLAVSRAFG 202 (283)
Q Consensus 123 ~~~~GtT~~~~~i~~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~~~~~~~~~~~g~~~ltralG 202 (283)
...+|||+++|++.+.++|+||.||||+++.|+|+.+.|+.||+|....|..||..+||.+...| |++|.++|+|+||
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDG--RVNGGLNLSRA~G 404 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDG--RVNGGLNLSRAFG 404 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecc--eecCccchhhhhh
Confidence 35799999999999999999999999999999999999999999999999999999999998765 8999999999999
Q ss_pred ccccc---------cccccCcceEEEEec-CCcEEEEEcCCCCCCCCHHHHHHHHHc----cCCHHHHHHHHHHHHHhCC
Q 023348 203 DRLLK---------QYVVAEPEIQEEEID-GVDFIIIASDGLWNVISNRDAVAMVEH----ITDAEAASRKLIKEAYARG 268 (283)
Q Consensus 203 ~~~~k---------~~~~~~p~i~~~~l~-~~d~llL~SDGl~d~l~~~ei~~i~~~----~~~~~~~a~~L~~~A~~~g 268 (283)
|+.|| |++++-|+|....|. +++|+||+|||||++++.++++++++. .....++|+.|++.++...
T Consensus 405 DHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~ 484 (542)
T KOG0699|consen 405 DHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPS 484 (542)
T ss_pred hhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCC
Confidence 99998 568899999999999 788999999999999999999998865 5667889999999999743
Q ss_pred ------CCCceEEEEEEecC
Q 023348 269 ------SSDNITCVVVRFEN 282 (283)
Q Consensus 269 ------~~DNiTvivv~~~~ 282 (283)
+.||+|||++.|++
T Consensus 485 T~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 485 TDGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred CCCCCcCCCcceEEEEEecc
Confidence 68999999999964
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-28 Score=219.86 Aligned_cols=163 Identities=39% Similarity=0.651 Sum_probs=134.2
Q ss_pred HHHHHHHHHHhh------hhCCCCCCCceEEEEEEECCeEEEEEeccccEEEEe---CC---eeeecCCCCCCCCHHHHH
Q 023348 107 VFKKTDENYLSE------EKGQHKDAGSTASTAVLLGDRLLVANVGDSRVVASR---AG---SAIPLSIDHKPDRSDERQ 174 (283)
Q Consensus 107 a~~~~~~~~~~~------~~~~~~~~GtT~~~~~i~~~~l~ianvGDSR~yl~r---~g---~~~~lT~DH~~~~~~e~~ 174 (283)
||.++++.|+.. ..++..-+|+++++.++.++.+||||+|||||+|.+ ++ ..+|||.||+..++.|+.
T Consensus 176 Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~ 255 (390)
T KOG0700|consen 176 AFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVR 255 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHH
Confidence 455555555544 223445699999999999999999999999999963 33 478999999999999999
Q ss_pred HHHHhC---CeEEecCceeecCcccccccccccccc---------------------cccccCcceEEEEec-CCcEEEE
Q 023348 175 RIEEAG---GFVIWAGTWRVGGVLAVSRAFGDRLLK---------------------QYVVAEPEIQEEEID-GVDFIII 229 (283)
Q Consensus 175 ri~~~g---g~~~~~~~~~~~g~~~ltralG~~~~k---------------------~~~~~~p~i~~~~l~-~~d~llL 229 (283)
||+... -.+.....||+.|.+++||||||..+| |+++++|.++.+.|. .+.||||
T Consensus 256 Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIl 335 (390)
T KOG0700|consen 256 RIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLIL 335 (390)
T ss_pred HHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEE
Confidence 996553 234444558999999999999999988 579999999999999 6779999
Q ss_pred EcCCCCCCCCHHHHHHHHHcc----CCHHHHHHHHHHHHHhCCC
Q 023348 230 ASDGLWNVISNRDAVAMVEHI----TDAEAASRKLIKEAYARGS 269 (283)
Q Consensus 230 ~SDGl~d~l~~~ei~~i~~~~----~~~~~~a~~L~~~A~~~g~ 269 (283)
+|||||++++++|+++++.+. ..-+.+|+.|++.|+.+..
T Consensus 336 ASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~aa 379 (390)
T KOG0700|consen 336 ASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRAA 379 (390)
T ss_pred eccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhhh
Confidence 999999999999999999883 2235689999999987653
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.92 E-value=1.7e-24 Score=188.33 Aligned_cols=175 Identities=33% Similarity=0.558 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHhhhhCCCCCCCceEEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCCHHHHHHHHHhC----
Q 023348 105 VEVFKKTDENYLSEEKGQHKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEEAG---- 180 (283)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~g---- 180 (283)
+.+|+..++.+.++.......+|||++++++.-+++|++|.||||++++|+++++.|+++.+|.. ||+|+++.+
T Consensus 225 EsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPet--ERqRlQ~Laf~~P 302 (493)
T KOG1323|consen 225 ESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPET--ERQRLQELAFRNP 302 (493)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHH--HHHHHHHHhhcCh
Confidence 66788888888887777777899999999999999999999999999999999999999999866 888887654
Q ss_pred ----CeE------------------E---e-----------------------cCceeecCcccccccccccccc-----
Q 023348 181 ----GFV------------------I---W-----------------------AGTWRVGGVLAVSRAFGDRLLK----- 207 (283)
Q Consensus 181 ----g~~------------------~---~-----------------------~~~~~~~g~~~ltralG~~~~k----- 207 (283)
+.. . | ....|+.+.+.++|.|||+.+|
T Consensus 303 eLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~dsn 382 (493)
T KOG1323|consen 303 ELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDSN 382 (493)
T ss_pred HhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecCC
Confidence 111 0 0 0122344668999999999886
Q ss_pred ----cccccCcceEEEEec-----CCcEEEEEcCCCCCCCCHHHHHHHHHcc------CCHH---HHHHHHHHHHHh---
Q 023348 208 ----QYVVAEPEIQEEEID-----GVDFIIIASDGLWNVISNRDAVAMVEHI------TDAE---AASRKLIKEAYA--- 266 (283)
Q Consensus 208 ----~~~~~~p~i~~~~l~-----~~d~llL~SDGl~d~l~~~ei~~i~~~~------~~~~---~~a~~L~~~A~~--- 266 (283)
|+.++.|+++..++. .+|++||+||||||+++++|+..++++. .+|. .+|+.|+..|..
T Consensus 383 l~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k 462 (493)
T KOG1323|consen 383 LSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQK 462 (493)
T ss_pred cccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCccC
Confidence 678899999999886 7899999999999999999999998772 3342 478888887753
Q ss_pred ----------CCCCCceEEEEEEec
Q 023348 267 ----------RGSSDNITCVVVRFE 281 (283)
Q Consensus 267 ----------~g~~DNiTvivv~~~ 281 (283)
.|+-|+|||.||-+.
T Consensus 463 ~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 463 DRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred CCceeccCCCcCCCCceEEEEEecc
Confidence 246899999999875
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.83 E-value=2.8e-19 Score=155.58 Aligned_cols=131 Identities=23% Similarity=0.329 Sum_probs=99.6
Q ss_pred CCceEEEEEEE--CCeEEEEEeccccEEEEeCCeeeecCCCCCCC--CHHHHHHHHHhCCeEEecCceeecCcccccccc
Q 023348 126 AGSTASTAVLL--GDRLLVANVGDSRVVASRAGSAIPLSIDHKPD--RSDERQRIEEAGGFVIWAGTWRVGGVLAVSRAF 201 (283)
Q Consensus 126 ~GtT~~~~~i~--~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~--~~~e~~ri~~~gg~~~~~~~~~~~g~~~ltral 201 (283)
+.||++++.+. +++||++|+|||-..++|+|+++.-|..+... .+... ..++. ....++
T Consensus 167 GSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQL----------------s~~p~-~~~~~~ 229 (330)
T KOG1379|consen 167 GSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQL----------------SSPPE-GYSSYI 229 (330)
T ss_pred CcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceee----------------ccCCc-cccccc
Confidence 67888888888 89999999999999999999999988865421 10000 00000 002224
Q ss_pred cccccccccccCcceEEEEecCCcEEEEEcCCCCCCCCHHHHHHHHHc-----cCCHHHHHHHHHHHHHhC---------
Q 023348 202 GDRLLKQYVVAEPEIQEEEIDGVDFIIIASDGLWNVISNRDAVAMVEH-----ITDAEAASRKLIKEAYAR--------- 267 (283)
Q Consensus 202 G~~~~k~~~~~~p~i~~~~l~~~d~llL~SDGl~d~l~~~ei~~i~~~-----~~~~~~~a~~L~~~A~~~--------- 267 (283)
+|. .-..+...+++++||+|||+||||||++.+++|.+++.. ..+++..|+.|++.|...
T Consensus 230 ~d~------p~~ad~~~~~v~~GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SP 303 (330)
T KOG1379|consen 230 SDV------PDSADVTSFDVQKGDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSP 303 (330)
T ss_pred cCC------ccccceEEEeccCCCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCCh
Confidence 442 235578899999999999999999999999999999865 457899999999988642
Q ss_pred --------------CCCCceEEEEEE
Q 023348 268 --------------GSSDNITCVVVR 279 (283)
Q Consensus 268 --------------g~~DNiTvivv~ 279 (283)
|..|+|||||..
T Consensus 304 FA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 304 FAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred HHHHHHHhCcccCCCCcccEEEEEec
Confidence 458999999975
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=8.2e-20 Score=177.38 Aligned_cols=211 Identities=25% Similarity=0.381 Sum_probs=170.3
Q ss_pred CceEEEEEeeecCCCCCcceEEEeecccCCeeeEEEEEEe---------------------------------hHHHHHH
Q 023348 65 AKFSYGYSTFKGKRSSMEDFYETSLSEVDGQMVAFFGVYD---------------------------------VEVFKKT 111 (283)
Q Consensus 65 ~~~~~~~~s~~G~R~~neD~~~~~~~~~~~~~~~l~~V~D---------------------------------~~a~~~~ 111 (283)
.-+.+|++...|.|..+-=+.....+...+ +...||++| +.+|...
T Consensus 520 ~~~t~Gv~~~~gqrnk~c~~~~~v~nf~~~-~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~ 598 (1081)
T KOG0618|consen 520 FLWTYGVAGVSGQRNKVCSRAVWVENFFLN-PQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRL 598 (1081)
T ss_pred eheeeccchhcccccchhhhhhhhhhcccC-CcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 346789999999988765554433222222 347888998 2233333
Q ss_pred HHHHHhhhhCCCCCCCceEEEEEEEC--------CeEEEEEeccccEEEEeCCeeeecCCCC-CCCCHHHHHHHHHhCCe
Q 023348 112 DENYLSEEKGQHKDAGSTASTAVLLG--------DRLLVANVGDSRVVASRAGSAIPLSIDH-KPDRSDERQRIEEAGGF 182 (283)
Q Consensus 112 ~~~~~~~~~~~~~~~GtT~~~~~i~~--------~~l~ianvGDSR~yl~r~g~~~~lT~DH-~~~~~~e~~ri~~~gg~ 182 (283)
++++ ......-|..++.+.|.. .++++||+|+|.++++++|+-.++|+-. ....+.|.+||+..+|+
T Consensus 599 ~rkl----g~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~ 674 (1081)
T KOG0618|consen 599 NRKL----GEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGF 674 (1081)
T ss_pred hhhh----hhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCe
Confidence 4433 122334556666666653 4789999999999999999988888865 44478999999999999
Q ss_pred EEecCceeecCcccccccccccccccccccCcceEEEEec-CCcEEEEEcCCCCCCCCHHHHHHHHHccCCHHHHHHHHH
Q 023348 183 VIWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEEID-GVDFIIIASDGLWNVISNRDAVAMVEHITDAEAASRKLI 261 (283)
Q Consensus 183 ~~~~~~~~~~g~~~ltralG~~~~k~~~~~~p~i~~~~l~-~~d~llL~SDGl~d~l~~~ei~~i~~~~~~~~~~a~~L~ 261 (283)
+.. ..+++|+...||++|.....|.+.++|+|..+.+. .+++||+++-+||++|+.+++.+.+++..+|-.+|++|+
T Consensus 675 i~e--d~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~ 752 (1081)
T KOG0618|consen 675 ITE--DNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLC 752 (1081)
T ss_pred ecC--CCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHHH
Confidence 975 44788888999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCceEEEEEEecC
Q 023348 262 KEAYARGSSDNITCVVVRFEN 282 (283)
Q Consensus 262 ~~A~~~g~~DNiTvivv~~~~ 282 (283)
+.|...|..||++|+||++.+
T Consensus 753 d~AqSYgc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 753 DLAQSYGCAENVSVLVVRLNH 773 (1081)
T ss_pred HHHHhcccccCeeEEEEEeec
Confidence 999999999999999999864
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.72 E-value=9.8e-17 Score=136.73 Aligned_cols=145 Identities=20% Similarity=0.344 Sum_probs=82.9
Q ss_pred EeeecCCCCCcceEEEeecccCCeeeEEEEEEe-------------------------------h----HHHHHHHHHHH
Q 023348 72 STFKGKRSSMEDFYETSLSEVDGQMVAFFGVYD-------------------------------V----EVFKKTDENYL 116 (283)
Q Consensus 72 ~s~~G~R~~neD~~~~~~~~~~~~~~~l~~V~D-------------------------------~----~a~~~~~~~~~ 116 (283)
.+++|.+..|||++.+... .+ ..+++||| . +.+..+.+.+.
T Consensus 3 ~sh~~~~~~nqD~~~~~~~-~~---~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD-DD---GNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEIL 78 (212)
T ss_dssp ----TTSSS--EEEEEE-T-CC---TCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC-CC---CEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5789999999999986532 12 25669999 0 11233333333
Q ss_pred h---------hhhCCCCCCCceEEEEEEECCeEEEEEeccccEEE-EeCCeeeecCCCCCCCCHHHHHHHHHhCCeEEec
Q 023348 117 S---------EEKGQHKDAGSTASTAVLLGDRLLVANVGDSRVVA-SRAGSAIPLSIDHKPDRSDERQRIEEAGGFVIWA 186 (283)
Q Consensus 117 ~---------~~~~~~~~~GtT~~~~~i~~~~l~ianvGDSR~yl-~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~~~~~ 186 (283)
. ........++||++++++.++.++++|+||||+|+ .++|++.+++.||+.. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~----~~------------ 142 (212)
T PF13672_consen 79 SIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGE----YP------------ 142 (212)
T ss_dssp HHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHH----HH------------
T ss_pred HHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccch----hh------------
Confidence 1 12345567899999999999999999999999975 5899999999999721 10
Q ss_pred CceeecCcccccccccccccccccccCcceEEEEecCCcEEEEEcCCCCCCCCHHH-HHHHHHc
Q 023348 187 GTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEEIDGVDFIIIASDGLWNVISNRD-AVAMVEH 249 (283)
Q Consensus 187 ~~~~~~g~~~ltralG~~~~k~~~~~~p~i~~~~l~~~d~llL~SDGl~d~l~~~e-i~~i~~~ 249 (283)
..++.+.... .....++..+.+.+++.|+|||||||+.+...+ +..++..
T Consensus 143 ---------~~~~~~~~~~----~~~~~~~~~~~~~~~d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 143 ---------NQTRSLTGDD----PEPDVQYGSIPLEEGDVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp ---------HCTTSCCHHC----CCTETEEEEEE--TT-EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred ---------hhhhccCccc----cccCCeEEEEEcCCCCEEEEECcCccccCCCHHHHHHHhhh
Confidence 0123333221 122336666777899999999999999998655 6667655
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.68 E-value=3.2e-15 Score=125.50 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=109.4
Q ss_pred EEEEEeeecCCCCCcceEEEeecccCCeeeEEEEEEe-----------------------------hHHHHHHHHHHHhh
Q 023348 68 SYGYSTFKGKRSSMEDFYETSLSEVDGQMVAFFGVYD-----------------------------VEVFKKTDENYLSE 118 (283)
Q Consensus 68 ~~~~~s~~G~R~~neD~~~~~~~~~~~~~~~l~~V~D-----------------------------~~a~~~~~~~~~~~ 118 (283)
.++.....+. ...-|++.+.... + ...+|+|+| .+.+..+++.+...
T Consensus 5 ~~~~~~~p~~-~~~GD~~~~~~~~-~--~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~~~ 80 (193)
T smart00331 5 LIAQYYEDAT-QVGGDFYDVVKLP-E--GRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIYEN 80 (193)
T ss_pred EEEEEEcchH-hcCccEEEEEEeC-C--CeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Confidence 3333333333 5567887665322 2 247899999 22233333333322
Q ss_pred hhCCCCCCCceEEEEEE--ECCeEEEEEeccccEEEEe-CCeeeecCCCCCCCCHHHHHHHHHhCCeEEecCceeecCcc
Q 023348 119 EKGQHKDAGSTASTAVL--LGDRLLVANVGDSRVVASR-AGSAIPLSIDHKPDRSDERQRIEEAGGFVIWAGTWRVGGVL 195 (283)
Q Consensus 119 ~~~~~~~~GtT~~~~~i--~~~~l~ianvGDSR~yl~r-~g~~~~lT~DH~~~~~~e~~ri~~~gg~~~~~~~~~~~g~~ 195 (283)
....+|+|++++++ ..++++++|+||+|+|+++ ++...+++.+.
T Consensus 81 ---~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~------------------------------ 127 (193)
T smart00331 81 ---GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL------------------------------ 127 (193)
T ss_pred ---CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC------------------------------
Confidence 24568999999998 5889999999999999998 66666666542
Q ss_pred cccccccccccccccccCcceEEEEecCCcEEEEEcCCCCCCCCHHHHHHHHHcc--CCHHHHHHHHHHHHH
Q 023348 196 AVSRAFGDRLLKQYVVAEPEIQEEEIDGVDFIIIASDGLWNVISNRDAVAMVEHI--TDAEAASRKLIKEAY 265 (283)
Q Consensus 196 ~ltralG~~~~k~~~~~~p~i~~~~l~~~d~llL~SDGl~d~l~~~ei~~i~~~~--~~~~~~a~~L~~~A~ 265 (283)
++.||.. ...+++...+.+.++|+|+|+||||||.+..+++.+++++. .++++++++|++.+.
T Consensus 128 --~~~lG~~-----~~~~~~~~~~~l~~gd~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 128 --GAPLGLE-----PDVEVDVRELTLEPGDLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred --CceeeeC-----CCCcceeEEEeeCCCCEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 2346654 23356778888999999999999999999999999999874 468899998888764
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.60 E-value=5.1e-14 Score=140.44 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=123.0
Q ss_pred CCceEEEEEee-ecCCCCCcceEEEeecccCCeeeEEEEEEe-----------------------------hHHHHHHHH
Q 023348 64 TAKFSYGYSTF-KGKRSSMEDFYETSLSEVDGQMVAFFGVYD-----------------------------VEVFKKTDE 113 (283)
Q Consensus 64 ~~~~~~~~~s~-~G~R~~neD~~~~~~~~~~~~~~~l~~V~D-----------------------------~~a~~~~~~ 113 (283)
..++.++.... ++.+..+.|.+.+... .++ ..+++|+| .+++..+|.
T Consensus 549 ~~~~~~g~a~~~k~g~~vsGD~y~~~~l-~~g--~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~~~~ai~~lN~ 625 (764)
T TIGR02865 549 KYHVSTGVARAAKDGELVSGDSYSFGKL-SAG--KYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFDREVAIKTVNS 625 (764)
T ss_pred ceeehhhHHHhcCCCCcccCceEEEEEE-CCC--EEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455555433 3336789999877532 222 26889999 122233333
Q ss_pred HHHhhhhCCCCCCCceEEEEEEE--CCeEEEEEeccccEEEEeCCeeeecCCCCCCCCHHHHHHHHHhCCeEEecCceee
Q 023348 114 NYLSEEKGQHKDAGSTASTAVLL--GDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEEAGGFVIWAGTWRV 191 (283)
Q Consensus 114 ~~~~~~~~~~~~~GtT~~~~~i~--~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~~~~~~~~~~ 191 (283)
.+... ....+.+|+.+++++ .+++.++|+|+++.|+.|++++.+++..+.|
T Consensus 626 ~L~~~---~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP------------------------ 678 (764)
T TIGR02865 626 ILSLR---STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP------------------------ 678 (764)
T ss_pred HHHhC---CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce------------------------
Confidence 33221 234578999999996 7899999999999999999988888654332
Q ss_pred cCcccccccccccccccccccCcceEEEEecCCcEEEEEcCCCCCCCCHHH-----HHHHHHc--cCCHHHHHHHHHHHH
Q 023348 192 GGVLAVSRAFGDRLLKQYVVAEPEIQEEEIDGVDFIIIASDGLWNVISNRD-----AVAMVEH--ITDAEAASRKLIKEA 264 (283)
Q Consensus 192 ~g~~~ltralG~~~~k~~~~~~p~i~~~~l~~~d~llL~SDGl~d~l~~~e-----i~~i~~~--~~~~~~~a~~L~~~A 264 (283)
+|-. ...+++....++.+||+|||+|||+||..++.+ +.+++++ ..+|+++++.|++.+
T Consensus 679 ---------lGil-----~~~~~~~~~~~L~~GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a 744 (764)
T TIGR02865 679 ---------IGIL-----DEVDVELVRKKLKNGDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKA 744 (764)
T ss_pred ---------eEec-----cCCccceEEEEeCCCCEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 2321 123567778889999999999999999876433 7777765 468999999999999
Q ss_pred HhCC---CCCceEEEEEEe
Q 023348 265 YARG---SSDNITCVVVRF 280 (283)
Q Consensus 265 ~~~g---~~DNiTvivv~~ 280 (283)
++.. ..||+|++++++
T Consensus 745 ~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 745 KELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHhcCCCCCCCeEEEEEEe
Confidence 8653 379999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.48 E-value=7e-12 Score=104.98 Aligned_cols=119 Identities=20% Similarity=0.259 Sum_probs=85.9
Q ss_pred CCCceEEEEEEE--CCeEEEEEeccccEEEEeCC--eeeecCCCCCCCCHHHHHHHHHhCCeEEecCceeecCccccccc
Q 023348 125 DAGSTASTAVLL--GDRLLVANVGDSRVVASRAG--SAIPLSIDHKPDRSDERQRIEEAGGFVIWAGTWRVGGVLAVSRA 200 (283)
Q Consensus 125 ~~GtT~~~~~i~--~~~l~ianvGDSR~yl~r~g--~~~~lT~DH~~~~~~e~~ri~~~gg~~~~~~~~~~~g~~~ltra 200 (283)
.+.+|++++.+. .++++++|+|++++++++++ ....+.....+
T Consensus 59 ~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~--------------------------------- 105 (193)
T PF07228_consen 59 NRYATACYAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGPP--------------------------------- 105 (193)
T ss_dssp STTEEEEEEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSBB---------------------------------
T ss_pred cccceEEEEEecccceEEEEeCCCCCCEEEEeccccceeecccCccc---------------------------------
Confidence 478899999887 77899999999999999983 33333332211
Q ss_pred ccccccccccccCcceEEEEecCCcEEEEEcCCCCCCCCHH-------HHHHHHHc--cCCHHHHHHHHHHHHHhC---C
Q 023348 201 FGDRLLKQYVVAEPEIQEEEIDGVDFIIIASDGLWNVISNR-------DAVAMVEH--ITDAEAASRKLIKEAYAR---G 268 (283)
Q Consensus 201 lG~~~~k~~~~~~p~i~~~~l~~~d~llL~SDGl~d~l~~~-------ei~~i~~~--~~~~~~~a~~L~~~A~~~---g 268 (283)
||.. ...+.....+.+.+||.|+|+||||+|....+ .+.+++.+ ..+++++++.|++.+... .
T Consensus 106 lG~~-----~~~~~~~~~~~l~~gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (193)
T PF07228_consen 106 LGIF-----EDIDYQEQEIQLEPGDRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGP 180 (193)
T ss_dssp CSSS-----CTTCEEEEEEE--TTEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSS
T ss_pred eeee-----ccccccceEEEeccccEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCC
Confidence 4532 22355566788889999999999999998433 44566763 467999999999998873 4
Q ss_pred CCCceEEEEEEec
Q 023348 269 SSDNITCVVVRFE 281 (283)
Q Consensus 269 ~~DNiTvivv~~~ 281 (283)
..||+|+++++++
T Consensus 181 ~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 181 LRDDITVLVIRRQ 193 (193)
T ss_dssp TSS-EEEEEEEE-
T ss_pred CCCceEEEEEEEC
Confidence 7899999999974
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.44 E-value=2.5e-05 Score=72.22 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=88.8
Q ss_pred CCceEEEEEEE--CCeEEEEEeccccEEEEeCCee---eecCCCCCCCCHHHHHHHHHhCCeEEecCceeecCccccccc
Q 023348 126 AGSTASTAVLL--GDRLLVANVGDSRVVASRAGSA---IPLSIDHKPDRSDERQRIEEAGGFVIWAGTWRVGGVLAVSRA 200 (283)
Q Consensus 126 ~GtT~~~~~i~--~~~l~ianvGDSR~yl~r~g~~---~~lT~DH~~~~~~e~~ri~~~gg~~~~~~~~~~~g~~~ltra 200 (283)
+=+|+..++++ .+.+..+|+|---.++++.++. ..+. .....
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~---------------------------------~~g~p 277 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT---------------------------------ALGLP 277 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc---------------------------------CCCce
Confidence 66888888887 7899999999999999986542 2221 23445
Q ss_pred ccccccccccccCcceEEEEecCCcEEEEEcCCCCC-------CCCHHHHHHHHHc--cCCHHHHHHHHHHHHHhC----
Q 023348 201 FGDRLLKQYVVAEPEIQEEEIDGVDFIIIASDGLWN-------VISNRDAVAMVEH--ITDAEAASRKLIKEAYAR---- 267 (283)
Q Consensus 201 lG~~~~k~~~~~~p~i~~~~l~~~d~llL~SDGl~d-------~l~~~ei~~i~~~--~~~~~~~a~~L~~~A~~~---- 267 (283)
+|.. ....+.+....+.+||.++|.|||+.+ .+..+....++.+ ..+++++++.+.+.....
T Consensus 278 iG~~-----~~~~~~~~~~~l~~gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~ 352 (367)
T COG2208 278 IGLL-----PDYQYEVASLQLEPGDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQ 352 (367)
T ss_pred eeec-----CCccchheeEEecCCCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCc
Confidence 6654 334666777888899999999999999 5667777777763 467888888888876553
Q ss_pred CCCCceEEEEEEec
Q 023348 268 GSSDNITCVVVRFE 281 (283)
Q Consensus 268 g~~DNiTvivv~~~ 281 (283)
.-.||+|++++++.
T Consensus 353 ~~~DDiTll~lk~~ 366 (367)
T COG2208 353 IQDDDITLLVLKVK 366 (367)
T ss_pred cccCceEEEEEEec
Confidence 24688999999986
No 20
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=60.61 E-value=5.2 Score=27.88 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=15.7
Q ss_pred CCcEEEEEcCCCCCCCCHH
Q 023348 223 GVDFIIIASDGLWNVISNR 241 (283)
Q Consensus 223 ~~d~llL~SDGl~d~l~~~ 241 (283)
.|+.||+++||+|=.+...
T Consensus 26 ~G~Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 26 PGHRLLVASNGVFLEVRRP 44 (72)
T ss_pred CCcEEEEecCcEEEEEech
Confidence 8999999999999665433
No 21
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=48.18 E-value=50 Score=27.49 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=36.1
Q ss_pred cCCcEEEEEcCCCCC-----------CCCHHHHHHHHHcc----CCHHHHHHHHHHHHHhCC
Q 023348 222 DGVDFIIIASDGLWN-----------VISNRDAVAMVEHI----TDAEAASRKLIKEAYARG 268 (283)
Q Consensus 222 ~~~d~llL~SDGl~d-----------~l~~~ei~~i~~~~----~~~~~~a~~L~~~A~~~g 268 (283)
+-+|-+|..|.|+|- +|.++..-+.+.+. .-|.+.|.+|++.-.++|
T Consensus 69 DIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 69 DIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred ccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 446889999999985 56666666666653 348899999999988876
No 22
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.10 E-value=52 Score=29.55 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=53.7
Q ss_pred cccEEEEeCCe-eeecCCCCCCCCHHHHHHHHHhCCeEEecCceeecCcccccccccccccccccccCcceEEEEecCCc
Q 023348 147 DSRVVASRAGS-AIPLSIDHKPDRSDERQRIEEAGGFVIWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEEIDGVD 225 (283)
Q Consensus 147 DSR~yl~r~g~-~~~lT~DH~~~~~~e~~ri~~~gg~~~~~~~~~~~g~~~ltralG~~~~k~~~~~~p~i~~~~l~~~d 225 (283)
|+|+|.+..+. +...-.||+......++.+.+.++..... ++ .+.-.|=+.+..+.+ ...-+....
T Consensus 104 DTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~---~~----~Va~Dl~~~dw~~~L------~~~G~d~~~ 170 (297)
T COG3315 104 DTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAH---RR----LVAVDLREDDWPQAL------AAAGFDRSR 170 (297)
T ss_pred ccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCce---EE----EEeccccccchHHHH------HhcCCCcCC
Confidence 99999998885 99999999988877777777777643100 00 111111100000000 001111233
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHc
Q 023348 226 FIIIASDGLWNVISNRDAVAMVEH 249 (283)
Q Consensus 226 ~llL~SDGl~d~l~~~ei~~i~~~ 249 (283)
-.++-.-||.-||+.+++.+++..
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~ 194 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSR 194 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHH
Confidence 345556899999999999888765
No 23
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=36.21 E-value=45 Score=22.23 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHc-cCCHHHHHHHHHH
Q 023348 237 VISNRDAVAMVEH-ITDAEAASRKLIK 262 (283)
Q Consensus 237 ~l~~~ei~~i~~~-~~~~~~~a~~L~~ 262 (283)
..+++||..+|.. ..||.+++++|+.
T Consensus 18 ~hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 18 CHSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3688999999887 6799999999986
No 24
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=34.36 E-value=22 Score=26.15 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=24.4
Q ss_pred EecCCcEEEEEcCCCCCCCCHHHHHHHHHc
Q 023348 220 EIDGVDFIIIASDGLWNVISNRDAVAMVEH 249 (283)
Q Consensus 220 ~l~~~d~llL~SDGl~d~l~~~ei~~i~~~ 249 (283)
-++++|-++|+.|||+-.+...+..+-++.
T Consensus 21 ~l~~~D~vlL~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 21 LLTEGDAVLLLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred HhcccCeEEEEcccchhhhcCcHHHHHHhc
Confidence 345899999999999998888777766655
No 25
>COG5518 Bacteriophage capsid portal protein [General function prediction only]
Probab=29.11 E-value=31 Score=31.81 Aligned_cols=134 Identities=19% Similarity=0.162 Sum_probs=78.4
Q ss_pred EEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCCHHHHHHHHHhCCeEEecCceeecCcccccccccccccccc-ccc
Q 023348 134 VLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEEAGGFVIWAGTWRVGGVLAVSRAFGDRLLKQY-VVA 212 (283)
Q Consensus 134 ~i~~~~l~ianvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~~~~~~~~~~~g~~~ltralG~~~~k~~-~~~ 212 (283)
+|+++++|+.--||-|.|=++.|.....+.-..+.++.-...| |. |...+.|.||.-..--. ..+
T Consensus 189 mID~k~v~FkeyGdpr~~d~~~G~yv~~~~le~~ane~ih~kI---gs-----------~~YG~Prwig~ivslygarkA 254 (492)
T COG5518 189 MIDLKTVWFKEYGDPRPYDFTTGNYVSMFHLEEPANEDIHQKI---GS-----------GAYGLPRWIGAIVSLYGARKA 254 (492)
T ss_pred eeccceEEEEecCCCcceeeccCccchhhhhhcchhhhHHHhh---cc-----------cccCchHHHHHHHHHHhhhhH
Confidence 3667889999999999999999976666655555443222222 10 12235555554210000 000
Q ss_pred -CcceEEEEec-CCcEEEEEcCCCCCCCCHHHHHHHHHccCCHHHHHHHHHHHHHh-----CCCCCceEEEEEEec
Q 023348 213 -EPEIQEEEID-GVDFIIIASDGLWNVISNRDAVAMVEHITDAEAASRKLIKEAYA-----RGSSDNITCVVVRFE 281 (283)
Q Consensus 213 -~p~i~~~~l~-~~d~llL~SDGl~d~l~~~ei~~i~~~~~~~~~~a~~L~~~A~~-----~g~~DNiTvivv~~~ 281 (283)
+.....+.-. .--+.|..+||..+.=+...+.+.++..+.++.+-+-|+-++.. ..+..|||=+-|++.
T Consensus 255 eeln~~YfknGrH~paai~~~~g~l~e~~y~~L~eyMk~~~g~eNa~~flm~e~~G~~~kn~hgd~~i~~vkV~Ik 330 (492)
T COG5518 255 EELNRMYFKNGRHAPAAIYMTDGALSEEDYNNLREYMKSAKGPENARNFLMYEPNGKKIKNAHGDGNISPVKVQIK 330 (492)
T ss_pred HHHHHHHHhcCccCceEEEecccccchHHHHHHHHHHhhcCCchhhhhheeeccCCeeccccCCCCCcCceeEEee
Confidence 0000011100 23478899999988878888888888877787766666654432 224567877766653
No 26
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=24.81 E-value=1.3e+02 Score=16.32 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=16.0
Q ss_pred EEEECCeEEEEEeccccEEEE
Q 023348 133 AVLLGDRLLVANVGDSRVVAS 153 (283)
Q Consensus 133 ~~i~~~~l~ianvGDSR~yl~ 153 (283)
++-.++.+|++-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 334788999999998887653
No 27
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=23.60 E-value=1e+02 Score=27.38 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.1
Q ss_pred CCCCCceEEEEEEECCeEEEEEeccc
Q 023348 123 HKDAGSTASTAVLLGDRLLVANVGDS 148 (283)
Q Consensus 123 ~~~~GtT~~~~~i~~~~l~ianvGDS 148 (283)
...+|||.+.+ +.++.+|..|+|-+
T Consensus 129 G~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 129 GALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp --BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 34589998876 68999999999987
No 28
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=22.50 E-value=1.9e+02 Score=20.50 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 023348 236 NVISNRDAVAMVEHITDAEAASRKLIKEAYARG 268 (283)
Q Consensus 236 d~l~~~ei~~i~~~~~~~~~~a~~L~~~A~~~g 268 (283)
++++.+|+..+-.......+.|..|++....+|
T Consensus 29 ~Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG 61 (83)
T cd08325 29 NVLNEEEMEKIKEENNTIMDKARVLVDSVTEKG 61 (83)
T ss_pred CCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 367888888888765668889999999887766
No 29
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=20.12 E-value=58 Score=27.32 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCCCCCCHHHHHHHHHc---------------------cCCHHHHHHHHHHHHHhC
Q 023348 223 GVDFIIIASDGLWNVISNRDAVAMVEH---------------------ITDAEAASRKLIKEAYAR 267 (283)
Q Consensus 223 ~~d~llL~SDGl~d~l~~~ei~~i~~~---------------------~~~~~~~a~~L~~~A~~~ 267 (283)
.|+.||+++||+|=.+....+.-+..= ..=|....+++++.|.+.
T Consensus 25 ~g~r~~~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~~ 90 (192)
T TIGR03735 25 PGHRFIVAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARAA 90 (192)
T ss_pred CCcEEEEecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHhc
Confidence 799999999999987766655433321 022467788888888774
Done!