BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023352
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I33|A Chain A, The Structure Of The Class C Acid Phosphatase From
Bacillus Anthracis
pdb|2I33|B Chain B, The Structure Of The Class C Acid Phosphatase From
Bacillus Anthracis
pdb|2I34|A Chain A, The Crystal Structure Of Class C Acid Phosphatase From
Bacillus Anthracis With Tungstate Bound
pdb|2I34|B Chain B, The Crystal Structure Of Class C Acid Phosphatase From
Bacillus Anthracis With Tungstate Bound
Length = 258
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 135 VFDIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIV 194
V D+DET L N P+ A + K Y P +++W+N +A G+ I
Sbjct: 63 VLDLDETVLDNSPHQAMSVKTGKGY-PYKWDDWINKAEAEALPGSIDFLKYTESKGVDIY 121
Query: 195 FLTGRPEDQRNVTEANLKHAGFD--TWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRI 252
+++ R +Q + T NL+ G T E ++L+ G+ +R++L + + I
Sbjct: 122 YISNRKTNQLDATIKNLERVGAPQATKEHILLQDPKEKGK-------EKRRELVSQTHDI 174
Query: 253 IGNIGDQWSDLLGTNA-----------------GNRTFKLPDPMY 280
+ GD SD G + G + P+PMY
Sbjct: 175 VLFFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFGEKFIIFPNPMY 219
>pdb|3OCY|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Inorganic Phosphate
pdb|3OCZ|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With The Inhibitor Adenosine
5-O-Thiomonophosphate
Length = 262
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 15/145 (10%)
Query: 137 DIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFL 196
D+DET L N PY KP++ + WV+ ++ K+ ++
Sbjct: 64 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 197 TGRPED-QRNVTEANLKHAGFDTWEK--LILKGSSHSGETAVVYKSSERKKLEMKGYRII 253
T R + +++ T ++K GF+ E+ LK + K++ ++E +GY I+
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSA-------KAARFAEIEKQGYEIV 176
Query: 254 GNIGDQWSDLLGT-----NAGNRTF 273
+GD D T NA R F
Sbjct: 177 LYVGDNLDDFGNTVYGKLNADRRAF 201
>pdb|3ET4|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase
pdb|3ET5|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Tungstate
Length = 255
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 15/145 (10%)
Query: 137 DIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFL 196
D+DET L N PY KP++ + WV+ ++ K+ ++
Sbjct: 65 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHKGKVFYV 124
Query: 197 TGRPEDQRNV-TEANLKHAGFDTWEK--LILKGSSHSGETAVVYKSSERKKLEMKGYRII 253
T R + T ++K GF+ E+ LK + K++ ++E +GY I+
Sbjct: 125 TNRKDSSEKAGTIDDMKRLGFNGVEESAFYLKKDKSA-------KAARFAEIEKQGYEIV 177
Query: 254 GNIGDQWSDLLGT-----NAGNRTF 273
+GD D T NA R F
Sbjct: 178 LYVGDNLDDFGNTVYGKLNADRRAF 202
>pdb|3SF0|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D64n Complexed With 5'amp
Length = 262
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 15/145 (10%)
Query: 137 DIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFL 196
++DET L N PY KP++ + WV+ ++ K+ ++
Sbjct: 64 NLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 197 TGRPED-QRNVTEANLKHAGFDTWEK--LILKGSSHSGETAVVYKSSERKKLEMKGYRII 253
T R + +++ T ++K GF+ E+ LK + K++ ++E +GY I+
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSA-------KAARFAEIEKQGYEIV 176
Query: 254 GNIGDQWSDLLGT-----NAGNRTF 273
+GD D T NA R F
Sbjct: 177 LYVGDNLDDFGNTVYGKLNADRRAF 201
>pdb|3OCU|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With Nmn
pdb|3OCV|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 5'-Amp
pdb|3OCW|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 3'-Amp
pdb|3OCX|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 2'-Amp
Length = 262
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 15/145 (10%)
Query: 137 DIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFL 196
D++ET L N PY KP++ + WV+ ++ K+ ++
Sbjct: 64 DLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 197 TGRPED-QRNVTEANLKHAGFDTWEK--LILKGSSHSGETAVVYKSSERKKLEMKGYRII 253
T R + +++ T ++K GF+ E+ LK + K++ ++E +GY I+
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSA-------KAARFAEIEKQGYEIV 176
Query: 254 GNIGDQWSDLLGT-----NAGNRTF 273
+GD D T NA R F
Sbjct: 177 LYVGDNLDDFGNTVYGKLNADRRAF 201
>pdb|3PCT|A Chain A, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|B Chain B, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|C Chain C, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
Length = 260
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 137 DIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFL 196
D+DET + N Y + ++P + +WV+ ++ G + F+
Sbjct: 64 DLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFV 123
Query: 197 TGRPED-QRNVTEANLKHAGFD--TWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRII 253
+ R +D ++ T ++K GF + L+LK + KS K++E GY I+
Sbjct: 124 SNRRDDVEKAGTVDDMKRLGFTGVNDKTLLLKKDKSN-------KSVRFKQVEDMGYDIV 176
Query: 254 GNIGDQWSDLLGTNAGNRTFK 274
+GD +D G+ T+K
Sbjct: 177 LFVGDNLNDF-----GDATYK 192
>pdb|3S5W|A Chain A, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S5W|B Chain B, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S61|A Chain A, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
pdb|3S61|B Chain B, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
Length = 463
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 73 SWRLGVETNNVIGWAT---------VPEKCAGYVGHYMLGQQYRMDSEVVANEAILYAQS 123
S L VET + + AT + E A Y+G + +G+ YR+ ++ AI YAQ
Sbjct: 358 SGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAI-YAQG 416
Query: 124 LKLAGDGKNIWVFDIDETSLSNLPYYAKN 152
A G + +T LS LP A+
Sbjct: 417 FSQASHG-------LSDTLLSVLPVRAEE 438
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,759,848
Number of Sequences: 62578
Number of extensions: 351747
Number of successful extensions: 639
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 7
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)