BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023353
MNGATLTQCSSAVLHRRPSNKLAANGVNGDSYYRAATKGAVEIIGGKKMGNGGSGNGRAS
FLSWTLQDAVYVARHHWIPCVFAMGLLFFMGVEYTLRMVPDSSPPFDLGFIATRPLHRLL
SSSPQLNTLFAALNTAFVGMQTAYILWTWLIEGRPRATISALFMFTFRGILGYSTQLPLP
QGFLGSGMDFPVGNVSFFLFYSGHVAGSVIASLDMRRMHRWEMAWLFDVLNVLQAVRLLG
TRGHYTIDLAVGVGAGILFDSLAGKYEQSKSKMGSAAKESLLS

High Scoring Gene Products

Symbol, full name Information P value
ROD1
AT3G15820
protein from Arabidopsis thaliana 2.7e-91
AT3G15830 protein from Arabidopsis thaliana 6.0e-87

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023353
        (283 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2093257 - symbol:ROD1 "AT3G15820" species:3702...   910  2.7e-91   1
TAIR|locus:2093272 - symbol:AT3G15830 "AT3G15830" species...   869  6.0e-87   1


>TAIR|locus:2093257 [details] [associations]
            symbol:ROD1 "AT3G15820" species:3702 "Arabidopsis
            thaliana" [GO:0004142 "diacylglycerol cholinephosphotransferase
            activity" evidence=IDA] [GO:0046470 "phosphatidylcholine metabolic
            process" evidence=IMP] EMBL:CP002686 EMBL:AB017071 GO:GO:0004142
            HOGENOM:HOG000030598 ProtClustDB:CLSN2685141 EMBL:AY086160
            IPI:IPI00529711 RefSeq:NP_566527.1 UniGene:At.5629 PRIDE:Q9LVZ7
            EnsemblPlants:AT3G15820.1 GeneID:820825 KEGG:ath:AT3G15820
            TAIR:At3g15820 InParanoid:Q9LVZ7 OMA:DNGYANG PhylomeDB:Q9LVZ7
            BioCyc:ARA:AT3G15820-MONOMER BioCyc:MetaCyc:AT3G15820-MONOMER
            Genevestigator:Q9LVZ7 Uniprot:Q9LVZ7
        Length = 301

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 171/226 (75%), Positives = 196/226 (86%)

Query:    58 RASFLSWTLQDAVYVARHHWIPCVFAMGLLFFMGVEYTLRMVPDSSPPFDLGFIATRPLH 117
             +ASF +WT +D VYV R+HWIPC+FA GLLFFMGVEYTL+M+P  S PFDLGF+ TR L+
Sbjct:    70 KASFTTWTARDIVYVVRYHWIPCMFAAGLLFFMGVEYTLQMIPARSEPFDLGFVVTRSLN 129

Query:   118 RLLSSSPQLNTLFAALNTAFVGMQTAYILWTWLIEGRPRATISALFMFTFRGILGYSTQL 177
             R+L+SSP LNT+ AALNT FVGMQT YI+WTWL+EGR RATI+ALFMFT RGILGYSTQL
Sbjct:   130 RVLASSPDLNTVLAALNTVFVGMQTTYIVWTWLVEGRARATIAALFMFTCRGILGYSTQL 189

Query:   178 PLPQGFLGSGMDFPVGNVSFFLFYSGHVAGSVIASLDMRRMHRWEMAWLFDVLNVLQAVR 237
             PLPQ FLGSG+DFPVGNVSFFLF+SGHVAGS+IASLDMRRM R  +A +FD+LNVLQ++R
Sbjct:   190 PLPQDFLGSGVDFPVGNVSFFLFFSGHVAGSMIASLDMRRMQRLRLAMVFDILNVLQSIR 249

Query:   238 LLGTRGHYTIDLAVGVGAGILFDSLAGKYEQSKSKMGSAAKESLLS 283
             LLGTRGHYTIDLAVGVGAGILFDSLAGKYE+  SK       SL+S
Sbjct:   250 LLGTRGHYTIDLAVGVGAGILFDSLAGKYEEMMSKRHLGTGFSLIS 295


>TAIR|locus:2093272 [details] [associations]
            symbol:AT3G15830 "AT3G15830" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB017071
            IPI:IPI00522089 RefSeq:NP_188204.1 UniGene:At.53330
            EnsemblPlants:AT3G15830.1 GeneID:820826 KEGG:ath:AT3G15830
            TAIR:At3g15830 eggNOG:NOG245394 HOGENOM:HOG000030598
            InParanoid:Q9LVZ6 OMA:HYTIDIA PhylomeDB:Q9LVZ6
            ProtClustDB:CLSN2685141 Genevestigator:Q9LVZ6 Uniprot:Q9LVZ6
        Length = 296

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 162/226 (71%), Positives = 192/226 (84%)

Query:    58 RASFLSWTLQDAVYVARHHWIPCVFAMGLLFFMGVEYTLRMVPDSSPPFDLGFIATRPLH 117
             +ASF++WT+ D +YVARHHWIPC+FA G++FF  VEYT +M P SS PFDLGF+ATR LH
Sbjct:    65 KASFMTWTMHDIIYVARHHWIPCLFAAGVMFFTVVEYTFQMTPASSQPFDLGFVATRYLH 124

Query:   118 RLLSSSPQLNTLFAALNTAFVGMQTAYILWTWLIEGRPRATISALFMFTFRGILGYSTQL 177
              +L+SSP LNT+ AALNT  VGMQT YI  TW +EGRPRATI+ALFMFT RGILGYSTQL
Sbjct:   125 SILASSPNLNTVLAALNTILVGMQTTYIGCTWAVEGRPRATIAALFMFTCRGILGYSTQL 184

Query:   178 PLPQGFLGSGMDFPVGNVSFFLFYSGHVAGSVIASLDMRRMHRWEMAWLFDVLNVLQAVR 237
             P PQ FLGSG+D+PVGNVSFFLFYSGHVAGS+IASLDM+RM R+ +A +FD+LNVLQ++R
Sbjct:   185 PRPQEFLGSGVDYPVGNVSFFLFYSGHVAGSMIASLDMKRMQRFRLAMVFDILNVLQSIR 244

Query:   238 LLGTRGHYTIDLAVGVGAGILFDSLAGKYEQSKSKMGSAAKESLLS 283
             LLGTRGHYTID+AVGVGAGILFDSLAGKYE+   +     + SL+S
Sbjct:   245 LLGTRGHYTIDIAVGVGAGILFDSLAGKYEEMSKRHLRNTRCSLIS 290


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       270   0.00097  114 3  11 22  0.40    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  194 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.51u 0.10s 18.61t   Elapsed:  00:00:01
  Total cpu time:  18.51u 0.10s 18.61t   Elapsed:  00:00:01
  Start:  Thu May  9 22:22:10 2013   End:  Thu May  9 22:22:11 2013

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