BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023353
(283 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0V4R4|LGT_ACIBY Prolipoprotein diacylglyceryl transferase OS=Acinetobacter
baumannii (strain AYE) GN=lgt PE=3 SV=1
Length = 272
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 79 PCVFAMGLLF-----FMGVEYTLRMVPDSSPPFDLGFIATRPLHRLLSSSPQLNTLFAAL 133
PCV GL+F F+G E R V D + PF + F T PLH + S ++ AL
Sbjct: 128 PCV-PTGLMFGRIGNFIGGELYGRAVTDPNYPFGMIF-PTDPLHLVRHPS----QIYQAL 181
Query: 134 NTAFVGMQTAYILWTWLIEGRPRATISALFMFTF---RGILGYSTQLPLPQGFL 184
G+ ILW + + RPR +SALF+ + R ++ + Q QGF+
Sbjct: 182 CE---GLLLFIILWWFSSKPRPRMAVSALFLMGYGVARFVMEFFRQPDADQGFI 232
>sp|A3M1X1|LGT_ACIBT Prolipoprotein diacylglyceryl transferase OS=Acinetobacter
baumannii (strain ATCC 17978 / NCDC KC 755) GN=lgt PE=3
SV=2
Length = 272
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 79 PCVFAMGLLF-----FMGVEYTLRMVPDSSPPFDLGFIATRPLHRLLSSSPQLNTLFAAL 133
PCV GL+F F+G E R V D + PF + F T PLH + S ++ AL
Sbjct: 128 PCV-PTGLMFGRIGNFIGGELYGRAVTDPNYPFGMIF-PTDPLHLVRHPS----QIYQAL 181
Query: 134 NTAFVGMQTAYILWTWLIEGRPRATISALFMFTF---RGILGYSTQLPLPQGFL 184
G+ ILW + + RPR +SALF+ + R ++ + Q QGF+
Sbjct: 182 CE---GLLLFIILWWFSSKPRPRMAVSALFLMGYGVARFVMEFFRQPDADQGFI 232
>sp|B7I4U3|LGT_ACIB5 Prolipoprotein diacylglyceryl transferase OS=Acinetobacter
baumannii (strain AB0057) GN=lgt PE=3 SV=1
Length = 272
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 79 PCVFAMGLLF-----FMGVEYTLRMVPDSSPPFDLGFIATRPLHRLLSSSPQLNTLFAAL 133
PCV GL+F F+G E R V D + PF + F T PLH + S ++ AL
Sbjct: 128 PCV-PTGLMFGRIGNFIGGELYGRAVTDPNYPFGMIF-PTDPLHLVRHPS----QIYQAL 181
Query: 134 NTAFVGMQTAYILWTWLIEGRPRATISALFMFTF---RGILGYSTQLPLPQGFL 184
G+ ILW + + RPR +SALF+ + R ++ + Q QGF+
Sbjct: 182 CE---GLLLFIILWWFSSKPRPRMAVSALFLMGYGVARFVMEFFRQPDADQGFI 232
>sp|B7H0P1|LGT_ACIB3 Prolipoprotein diacylglyceryl transferase OS=Acinetobacter
baumannii (strain AB307-0294) GN=lgt PE=3 SV=1
Length = 272
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 79 PCVFAMGLLF-----FMGVEYTLRMVPDSSPPFDLGFIATRPLHRLLSSSPQLNTLFAAL 133
PCV GL+F F+G E R V D + PF + F T PLH + S ++ AL
Sbjct: 128 PCV-PTGLMFGRIGNFIGGELYGRAVTDPNYPFGMIF-PTDPLHLVRHPS----QIYQAL 181
Query: 134 NTAFVGMQTAYILWTWLIEGRPRATISALFMFTF---RGILGYSTQLPLPQGFL 184
G+ ILW + + RPR +SALF+ + R ++ + Q QGF+
Sbjct: 182 CE---GLLLFIILWWFSSKPRPRMAVSALFLMGYGVARFVMEFFRQPDADQGFI 232
>sp|B2I3A5|LGT_ACIBC Prolipoprotein diacylglyceryl transferase OS=Acinetobacter
baumannii (strain ACICU) GN=lgt PE=3 SV=1
Length = 272
Score = 37.7 bits (86), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 79 PCVFAMGLLF-----FMGVEYTLRMVPDSSPPFDLGFIATRPLHRLLSSSPQLNTLFAAL 133
PCV GL+F F+G E R V D + PF + F T PLH + S ++ AL
Sbjct: 128 PCV-PTGLMFGRIGNFIGGELYGRAVTDPNYPFGMIF-PTDPLHLVRHPS----QIYQAL 181
Query: 134 NTAFVGMQTAYILWTWLIEGRPRATISALFMFTF---RGILGYSTQLPLPQGFL 184
G+ ILW + + RPR +SALF+ + R ++ + Q QGF+
Sbjct: 182 CE---GLLLFIILWWFSSKPRPRMAVSALFLMGYGVARFVMEFFRQPDADQGFI 232
>sp|Q56Y01|IPCS3_ARATH Phosphatidylinositol:ceramide inositolphosphotransferase 3
OS=Arabidopsis thaliana GN=IPCS3 PE=2 SV=1
Length = 289
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 134 NTAFVGMQTAYILWTW---LIEGRPRATI---SALFMF-----TFRGILGYSTQLPLPQG 182
T FV + ++ILWT+ + + T+ +F++ + R I ++TQLP P
Sbjct: 81 ETVFVTIFGSFILWTFHPFVSHSKKICTVLIWCRVFVYLAASQSLRIITFFATQLPGPNY 140
Query: 183 FLGSG-----------------MDFPVGNV--SFFLFYSGHVAGSVIASLDMRR--MHRW 221
G ++FP G + L +S H +++ +R RW
Sbjct: 141 HCREGSKLAKIPPPKNVLEVLLINFPDGVIYGCGDLIFSSHTIFTLVFVRTYQRYGTRRW 200
Query: 222 --EMAWLFDVLNVLQAVRLLGTRGHYTIDLAVG 252
+AWL + V+Q++ ++ +R HYT+D+ V
Sbjct: 201 IKHLAWL---MAVIQSILIIASRKHYTVDIVVA 230
>sp|B0VL66|LGT_ACIBS Prolipoprotein diacylglyceryl transferase OS=Acinetobacter
baumannii (strain SDF) GN=lgt PE=3 SV=1
Length = 272
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 79 PCVFAMGLLF-----FMGVEYTLRMVPDSSPPFDLGFIATRPLHRLLSSSPQLNTLFAAL 133
PCV GL+ F+G E R V D + PF + F T PLH + S ++ AL
Sbjct: 128 PCV-PTGLMLGRIGNFIGGELYGRAVTDPNYPFGMIF-PTDPLHLVRHPS----QIYQAL 181
Query: 134 NTAFVGMQTAYILWTWLIEGRPRATISALFMFTF---RGILGYSTQLPLPQGFL 184
G+ ILW + + RPR +SALF+ + R ++ + Q QGF+
Sbjct: 182 CE---GLLLFIILWWFSSKPRPRMAVSALFLMGYGVARFVMEFFRQPDADQGFI 232
>sp|P50276|MUP1_YEAST High-affinity methionine permease OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MUP1 PE=1 SV=1
Length = 574
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 68 DAVYVARHHWIPCVFAMGLLFFMGVEYTL 96
++VY + +WI CV A G+ FF GV Y +
Sbjct: 482 ESVYSSMPYWIHCVIAWGIFFFGGVYYVV 510
>sp|Q9PLI3|NQRF_CHLMU Probable Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=nqrF PE=3
SV=1
Length = 431
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 9 CSSAVLHRRPSNKLAANGVNGDSYYRAATKGAVEIIGGKKMGNGGSGNGRASFLSWTL 66
CSS + +P +K+ +G G+S+ + + + +IGG GS GR+ L L
Sbjct: 261 CSSYIFSLKPGDKVTVSGPYGESFMKEDNRPVIFLIGG-----AGSSFGRSHILDLLL 313
>sp|P58727|TLR4_FELCA Toll-like receptor 4 OS=Felis catus GN=TLR4 PE=2 SV=1
Length = 833
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 77 WIPCVFAMGLLFFMGVEYTLRMVPDSSP----PFDLGFIATRPL-HRLLSSSPQLNTLFA 131
W PCV + + + ++ L +PD+ P D+ F R L S+ P+L L
Sbjct: 26 WDPCVEVVPNITYQCMDLNLHKIPDNIPSSTKDLDMSFNPLRNLGSHSFSNFPELQVLDL 85
Query: 132 AL-------NTAFVGMQTAYILWTWLIEGRPRATISALFMFTFRGILGYSTQLPLPQGFL 184
+ + A+ G+ IL ++ G P I LF F G+ T + + +
Sbjct: 86 SRCEIQIIEDDAYQGLNHLSIL---ILTGNP---IQRLFPGAFSGLSSLQTLVAVETN-I 138
Query: 185 GSGMDFPVGNVS 196
S DFP+G++
Sbjct: 139 ASLEDFPIGHLK 150
>sp|O84745|NQRF_CHLTR Probable Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=nqrF PE=3
SV=1
Length = 431
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 9 CSSAVLHRRPSNKLAANGVNGDSYYRAATKGAVEIIGGKKMGNGGSGNGRASFLSWTLQ 67
CSS + +P +K+ +G G+S+ + + + +IGG GS GR+ L L
Sbjct: 261 CSSYIFSLKPGDKVMVSGPYGESFMKEDNRPVIFLIGG-----AGSSFGRSHILDLLLN 314
>sp|Q821Q3|NQRF_CHLCV Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydophila caviae (strain GPIC) GN=nqrF PE=3 SV=1
Length = 431
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 9 CSSAVLHRRPSNKLAANGVNGDSYYRAATKGAVEIIGGKKMGNGGSGNGRASFLSWTLQ 67
CSS + +P +K+ +G G+S+ + + + +IGG GS GR+ L L
Sbjct: 261 CSSYIFSLKPGDKITVSGPYGESFMKENNRPLIFLIGG-----AGSSFGRSHILDLLLN 314
>sp|Q9Z723|NQRF_CHLPN Probable Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydia pneumoniae GN=nqrF PE=3 SV=1
Length = 431
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 9 CSSAVLHRRPSNKLAANGVNGDSYYRAATKGAVEIIGGKKMGNGGSGNGRASFLSWTLQ 67
CSS V +P +K+ +G G+S+ + + + +IGG GS GR+ L L
Sbjct: 261 CSSYVFSLKPGDKITVSGPYGESFMKDDDRPLIFLIGG-----AGSSFGRSHILDLLLN 314
>sp|Q255Y6|NQRF_CHLFF Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydophila felis (strain Fe/C-56) GN=nqrF PE=3
SV=1
Length = 431
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 9 CSSAVLHRRPSNKLAANGVNGDSYYRAATKGAVEIIGGKKMGNGGSGNGRASFLSWTLQ 67
CSS + +P +K+ +G G+S+ + + + +IGG GS GR+ L L
Sbjct: 261 CSSYIFSLKPGDKITVSGPYGESFMKENNRPLIFLIGG-----AGSSFGRSHILDLLLD 314
>sp|Q3KKV3|NQRF_CHLTA Na(+)-translocating NADH-quinone reductase subunit F OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=nqrF PE=3 SV=1
Length = 431
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 9 CSSAVLHRRPSNKLAANGVNGDSYYRAATKGAVEIIGGKKMGNGGSGNGRASFLSWTLQ 67
CSS + +P +K+ +G G+S+ + + + +IGG GS GR+ L L
Sbjct: 261 CSSYIFSLKPGDKVMISGPYGESFMKEDNRPVIFLIGG-----AGSSFGRSHILDLLLN 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,433,909
Number of Sequences: 539616
Number of extensions: 4461484
Number of successful extensions: 12643
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 12641
Number of HSP's gapped (non-prelim): 18
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)