Query 023353
Match_columns 283
No_of_seqs 42 out of 44
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 03:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14378 PAP2_3: PAP2 superfam 99.8 1.5E-19 3.3E-24 154.0 14.1 156 107-262 10-191 (191)
2 PF14360 PAP2_C: PAP2 superfam 99.5 1.4E-13 3.1E-18 104.9 7.7 67 195-262 2-71 (74)
3 KOG3058 Uncharacterized conser 99.4 5.9E-12 1.3E-16 120.7 15.9 177 76-262 64-277 (351)
4 cd03386 PAP2_Aur1_like PAP2_li 99.0 2.7E-08 5.9E-13 85.3 14.8 144 122-265 22-184 (186)
5 cd03385 PAP2_BcrC_like PAP2_li 98.6 3.2E-06 6.9E-11 69.8 14.5 91 170-262 51-141 (144)
6 cd03395 PAP2_like_4 PAP2_like_ 98.3 2E-05 4.2E-10 67.0 14.2 147 116-262 9-169 (177)
7 PRK11837 undecaprenyl pyrophos 98.3 2.4E-05 5.1E-10 69.4 14.3 152 110-264 7-169 (202)
8 cd03392 PAP2_like_2 PAP2_like_ 98.3 3.9E-05 8.4E-10 64.9 15.0 146 114-266 14-178 (182)
9 cd01610 PAP2_like PAP2_like pr 98.0 4.7E-05 1E-09 57.5 9.3 95 168-262 19-120 (122)
10 cd03391 PAP2_containing_2_like 98.0 0.00012 2.6E-09 62.4 12.7 137 123-262 10-157 (159)
11 PF01569 PAP2: PAP2 superfamil 98.0 4.4E-06 9.6E-11 64.9 3.3 71 200-270 51-127 (129)
12 cd03393 PAP2_like_3 PAP2_like_ 97.9 5.3E-05 1.2E-09 61.2 8.6 96 166-262 27-123 (125)
13 cd03389 PAP2_lipid_A_1_phospha 97.9 0.00059 1.3E-08 59.2 14.1 97 166-263 83-182 (186)
14 cd03394 PAP2_like_5 PAP2_like_ 97.7 0.00015 3.3E-09 57.1 8.0 63 199-261 40-103 (106)
15 COG0671 PgpB Membrane-associat 97.7 0.0016 3.5E-08 52.7 14.0 75 195-269 131-213 (232)
16 PRK09597 lipid A 1-phosphatase 97.7 0.00078 1.7E-08 60.7 12.7 72 191-265 114-186 (190)
17 cd03388 PAP2_SPPase1 PAP2_like 97.7 0.0016 3.4E-08 54.5 13.1 94 166-260 47-147 (151)
18 cd03382 PAP2_dolichyldiphospha 97.6 0.0025 5.3E-08 54.2 13.7 134 120-262 8-157 (159)
19 cd03390 PAP2_containing_1_like 97.5 0.0011 2.5E-08 57.3 11.1 100 166-265 60-191 (193)
20 smart00014 acidPPc Acid phosph 97.4 0.0014 3.1E-08 51.3 9.2 94 169-262 12-114 (116)
21 cd03383 PAP2_diacylglycerolkin 97.4 0.0021 4.5E-08 52.5 9.7 63 200-262 41-104 (109)
22 PRK10699 phosphatidylglyceroph 97.2 0.0091 2E-07 55.4 13.1 70 197-266 156-229 (244)
23 cd03396 PAP2_like_6 PAP2_like_ 97.1 0.012 2.7E-07 51.1 12.3 96 168-263 83-193 (197)
24 cd03384 PAP2_wunen PAP2, wunen 97.0 0.0056 1.2E-07 51.7 9.0 64 199-262 73-148 (150)
25 PLN02250 lipid phosphate phosp 96.5 0.093 2E-06 50.3 14.6 64 199-262 162-239 (314)
26 cd03380 PAP2_like_1 PAP2_like_ 96.5 0.031 6.6E-07 48.9 10.2 114 123-260 88-204 (209)
27 PLN02715 lipid phosphate phosp 96.3 0.18 3.8E-06 48.8 15.3 103 160-263 131-264 (327)
28 PLN02525 phosphatidic acid pho 96.2 0.12 2.6E-06 50.2 13.4 94 169-262 52-159 (352)
29 cd03381 PAP2_glucose_6_phospha 96.0 0.047 1E-06 50.3 9.3 95 167-262 30-149 (235)
30 PLN02731 Putative lipid phosph 95.9 0.12 2.6E-06 50.1 12.1 98 165-263 130-258 (333)
31 cd03397 PAP2_acid_phosphatase 94.3 0.2 4.4E-06 45.4 7.8 59 200-260 152-211 (232)
32 cd03398 PAP2_haloperoxidase PA 93.5 1.1 2.4E-05 40.3 11.0 127 122-261 80-228 (232)
33 KOG3030 Lipid phosphate phosph 92.5 1.7 3.6E-05 42.1 11.2 67 200-266 181-260 (317)
34 KOG4268 Uncharacterized conser 87.4 1.4 3E-05 40.0 5.6 27 240-266 153-179 (189)
35 PRK13023 bifunctional preprote 41.0 2.1E+02 0.0046 31.2 10.0 20 240-259 479-498 (758)
36 PF05957 DUF883: Bacterial pro 34.7 61 0.0013 25.3 3.8 36 107-142 56-91 (94)
37 PRK15432 autoinducer 2 ABC tra 31.2 5E+02 0.011 25.2 11.4 109 56-177 26-138 (344)
38 PF07077 DUF1345: Protein of u 30.1 1.6E+02 0.0034 26.3 6.0 76 156-232 84-175 (180)
39 PRK12911 bifunctional preprote 29.5 2.5E+02 0.0055 32.9 8.7 44 80-123 945-992 (1403)
40 PF06637 PV-1: PV-1 protein (P 28.7 57 0.0012 33.3 3.3 21 220-240 22-42 (442)
41 COG4605 CeuC ABC-type enteroch 24.7 2.2E+02 0.0047 28.3 6.3 97 83-184 53-161 (316)
42 cd06163 S2P-M50_PDZ_RseP-like 24.6 2.8E+02 0.0061 24.6 6.6 58 91-148 48-110 (182)
43 COG4214 XylH ABC-type xylose t 22.1 3.3E+02 0.0072 27.8 7.2 150 60-221 46-205 (394)
44 PRK11285 araH L-arabinose tran 21.2 7.3E+02 0.016 23.7 10.3 106 57-175 46-155 (333)
45 PF05545 FixQ: Cbb3-type cytoc 20.3 2.8E+02 0.006 19.4 4.7 32 126-158 6-37 (49)
No 1
>PF14378 PAP2_3: PAP2 superfamily
Probab=99.82 E-value=1.5e-19 Score=154.01 Aligned_cols=156 Identities=32% Similarity=0.385 Sum_probs=136.2
Q ss_pred chhhhcchHhHHHhhcChhHHHHHHHH-HHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhhcccCCCCcccc
Q 023353 107 DLGFIATRPLHRLLSSSPQLNTLFAAL-NTAFVGMQTAYILWTWLIE-GRPRATISALFMFTFRGILGYSTQLPLPQGFL 184 (283)
Q Consensus 107 D~gF~aT~~lN~~l~en~~~~~~L~il-stl~vdm~~~Yil~~wv~~-gr~R~~iA~L~~f~~R~I~~~lt~Lp~P~gfl 184 (283)
.+||++|.++|+++.+||+++..++.. ++.++.+...++.|.+.-+ ++.|+....++...+.++.++.+.-..|+++.
T Consensus 10 ~lg~~~~~~~~~~~~~~p~l~~~l~~~Y~s~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Pa~~P~~~ 89 (191)
T PF14378_consen 10 ALGFDWESSLQRWLASHPWLSWILAFAYASFFFQVAFVVLLLALRRRPDRFRRFFRALLLALLIGFVIYILFPAAPPRFL 89 (191)
T ss_pred HcCCCcHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhh
Confidence 469999999999999999999999999 9999999999999988877 67888888888889999999888888888988
Q ss_pred cCcCCC-----Cccccccc------------------eeechhhHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHh
Q 023353 185 GSGMDF-----PVGNVSFF------------------LFYSGHVAGSVIASLDMRRMHRWEM-AWLFDVLNVLQAVRLLG 240 (283)
Q Consensus 185 ~~~p~f-----PyG~tSDF------------------LFfSGHva~~vI~aLe~Rr~~r~~l-a~~~~i~nilQ~~~LL~ 240 (283)
++.+++ |++..+++ .|.|+|+|.++++++.++|.++++. +.++.+.++++.+-.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afPSlH~a~a~l~~~~~~~~~~~~~~~~~~~~~~~~i~~stv~ 169 (191)
T PF14378_consen 90 PPDPGFVDHVAPVGGGSFFGFHALRDGTLSDLDNGVAAFPSLHVAWAVLCALALWRVGRPRWLRALFLAFNVLILFSTVY 169 (191)
T ss_pred cccCCcchhccccccccchhhhhhcccchhhhcccccccCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 877666 55444442 4999999999999999999666554 66899999999999999
Q ss_pred hccceeeehhhhHHHHHHHHHh
Q 023353 241 TRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 241 ~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
++.||.||+++|+..+.++..|
T Consensus 170 ~~~HY~iDv~aG~~la~~~~~L 191 (191)
T PF14378_consen 170 TGQHYVIDVIAGAALALLAIAL 191 (191)
T ss_pred hCcHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999998765
No 2
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=99.47 E-value=1.4e-13 Score=104.90 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=60.1
Q ss_pred cccceeechhhHHHHHHHHHHhhhhhhh---HHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHh
Q 023353 195 VSFFLFYSGHVAGSVIASLDMRRMHRWE---MAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 195 tSDFLFfSGHva~~vI~aLe~Rr~~r~~---la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
+.| |+||||+++++++++.+++-.+++ ++++..+++++..+++++.|.||||||+.|.+++.+.|++
T Consensus 2 CgD-liFSGHt~~~~l~~l~~~~y~~~~~~~~~~~~~~~~~~~~~~ii~sr~HYTvDV~~a~~it~~~f~~ 71 (74)
T PF14360_consen 2 CGD-LIFSGHTAFLTLCALFWWEYSPRRFWVLKVIMWLLAIIGSFLIIASRKHYTVDVVLAYYITSLVFWL 71 (74)
T ss_pred CCC-EEEchhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHH
Confidence 579 799999999999999776554444 8999999999999999999999999999999999999865
No 3
>KOG3058 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=5.9e-12 Score=120.71 Aligned_cols=177 Identities=23% Similarity=0.282 Sum_probs=113.9
Q ss_pred hhHHHHHhhhHhhhh------heeeeeeccC-CCCCCcchhhhcchHhHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 023353 76 HWIPCVFAMGLLFFM------GVEYTLRMVP-DSSPPFDLGFIATRPLHRLLSSSPQLNTLFAALNTAFVGMQTAYILWT 148 (283)
Q Consensus 76 h~~~~~f~~g~l~~m------~~ey~~~mv~-~~~~i~D~gF~aT~~lN~~l~en~~~~~~L~ilstl~vdm~~~Yil~~ 148 (283)
.|.+++++|..++.- ...|.-+-|| +..|-=|.+|..-.. =||..++-- ...++-+..++++|.
T Consensus 64 ~~~kt~lafl~~~~~~~l~~v~l~~vHervP~~~pPLPDi~f~~vp~-------i~wa~~~~e--~~~~~~~~~~f~ll~ 134 (351)
T KOG3058|consen 64 EWWKTLLAFLYLFVAALLNSVTLVYVHERVPDPYPPLPDIFFDLVPE-------IPWAFSLCE--IIGMILVVLLFTLLL 134 (351)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcHHHHhccc-------chHHHHHHH--HHHHHHHHHHHHHHH
Confidence 456666666555443 3347778888 556667998865443 344332211 111111223344444
Q ss_pred HHhcCc--hhHHHHH-HHHHHHHHHHhhcccCCCCcccccCcCC-------CC----------------ccccccceeec
Q 023353 149 WLIEGR--PRATISA-LFMFTFRGILGYSTQLPLPQGFLGSGMD-------FP----------------VGNVSFFLFYS 202 (283)
Q Consensus 149 wv~~gr--~R~~iA~-L~~f~~R~I~~~lt~Lp~P~gfl~~~p~-------fP----------------yG~tSDFLFfS 202 (283)
+--++- .||+++. ..+|+.|+|+...|+||.|....-..|- ++ ++-+.| |-||
T Consensus 135 fH~~r~iv~rR~~f~~gt~y~lR~iTm~vT~LPvP~~h~~C~~k~~~~~~~~~~r~l~~~~~~G~s~~~~~lCGD-lmfS 213 (351)
T KOG3058|consen 135 FHQHRWIVLRRVFFLLGTLYLLRCITMYVTQLPVPGQHFRCAPKPNGDLGEFLHRALEIWSGLGLSLFGVRLCGD-LMFS 213 (351)
T ss_pred HhcchhhHHHHHHHHHHHHHHHhhheeEEEecccCCCCcccCCcccccHHHHHHHHHHHHHhcCccccccCcccc-eeee
Confidence 444433 3666664 4556999999999999999653332221 11 344789 6999
Q ss_pred hhhHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHH-HHHHHh
Q 023353 203 GHVAGSVIASLDMRR---MHRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAG-ILFDSL 262 (283)
Q Consensus 203 GHva~~vI~aLe~Rr---~~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg-~lf~~L 262 (283)
||+=.++++++...+ +..+.|.+++-++++.+.+++++.|.||||||++|--.. ..||+.
T Consensus 214 GHTlvl~~~~l~~~eY~pr~~~~L~~i~wll~~~gi~~il~sr~HYTIDVvvAyyittrvfw~y 277 (351)
T KOG3058|consen 214 GHTLVLTLTALFITEYSPRRFIILHWISWLLAFVGIFLILASRKHYTIDVVVAYYITTRVFWSY 277 (351)
T ss_pred cchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhCCceeEEEEEehhhHHHHHHHH
Confidence 999999999985533 333455667999999999999999999999999887554 344444
No 4
>cd03386 PAP2_Aur1_like PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.
Probab=98.96 E-value=2.7e-08 Score=85.33 Aligned_cols=144 Identities=24% Similarity=0.201 Sum_probs=96.6
Q ss_pred cChhHHHHHHHH-HHHHHHHHHHHHHHHHHhc--CchhHH-HHHHHHHHHHHHHhhcccCCCCcccccCcCCCC------
Q 023353 122 SSPQLNTLFAAL-NTAFVGMQTAYILWTWLIE--GRPRAT-ISALFMFTFRGILGYSTQLPLPQGFLGSGMDFP------ 191 (283)
Q Consensus 122 en~~~~~~L~il-stl~vdm~~~Yil~~wv~~--gr~R~~-iA~L~~f~~R~I~~~lt~Lp~P~gfl~~~p~fP------ 191 (283)
+++++...+... .+...-+.+.+.+|.+..+ ++.++. .+.++..++=.+...+.+..+|--.........
T Consensus 22 ~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~iy~l~P~~~P~~~~~~~~~~~~~~~~~ 101 (186)
T cd03386 22 RHIPLDPLAWFPYGSLHFLVPLALLAWLFLFRPPGTLRRFRRALGLANLLGLLIYLLFPTAPPRYEPPYGLILLVLLMYG 101 (186)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhcccCCCCCccCccCCcchhhhcCC
Confidence 677777776665 3344444444444423333 223443 455555565566666667666543222111110
Q ss_pred -------c-cc-cccceeechhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHh
Q 023353 192 -------V-GN-VSFFLFYSGHVAGSVIASLDMRRMHRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 192 -------y-G~-tSDFLFfSGHva~~vI~aLe~Rr~~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
+ +. ....-|.|||++.++++++.+++.++++++.+..+..+.+++--+.+..||-+|+++|+..|++.+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~fPS~H~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~v~~~~H~~~Dv~~G~~l~~~~~~~ 181 (186)
T cd03386 102 SAGYTSGFGGFDNPFNAFPSLHVAWAVLAALFLWRHRRRLLRWLAVLWPLLIWLSTLYLGNHYFIDLVGGIALALLSFYL 181 (186)
T ss_pred CccccccccCCCCCcceeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHH
Confidence 1 11 11226999999999999998887776668888888999999999999999999999999999999999
Q ss_pred hhh
Q 023353 263 AGK 265 (283)
Q Consensus 263 ag~ 265 (283)
+.|
T Consensus 182 ~~~ 184 (186)
T cd03386 182 ARR 184 (186)
T ss_pred hhc
Confidence 876
No 5
>cd03385 PAP2_BcrC_like PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from Bacillus subtilis posesses undecaprenyl pyrophosphate (UPP) phospatase activity, and it is hypothesized that it competes with bacitracin for UPP, increasing the cell's resistance to bacitracin.
Probab=98.56 E-value=3.2e-06 Score=69.78 Aligned_cols=91 Identities=19% Similarity=0.110 Sum_probs=57.3
Q ss_pred HHhhcccCCCCcccccCcCCCCccccccceeechhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccceeeeh
Q 023353 170 ILGYSTQLPLPQGFLGSGMDFPVGNVSFFLFYSGHVAGSVIASLDMRRMHRWEMAWLFDVLNVLQAVRLLGTRGHYTIDL 249 (283)
Q Consensus 170 I~~~lt~Lp~P~gfl~~~p~fPyG~tSDFLFfSGHva~~vI~aLe~Rr~~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV 249 (283)
+....++-|+|.......+-. ...+++=|.|||++.++..+..+....+++...+..+..++.++-=+....||-.||
T Consensus 51 ~lk~~~~r~RP~~~~~~~~~~--~~~~~~SFPSgH~~~~~~~~~~l~~~~~~~~~~~~~~~a~~v~~SRvylg~H~~sDV 128 (144)
T cd03385 51 IIGLLYFHPRPFVVGLGHNLL--PHAADSSFPSDHTTLFFSIAFSLLLRRRKWAGWILLILALLVAWSRIYLGVHYPLDM 128 (144)
T ss_pred HHHHHcCCCCCCccccccccc--cCCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 445677778886322111111 112233479999999887665332222233445555666666666666789999999
Q ss_pred hhhHHHHHHHHHh
Q 023353 250 AVGVGAGILFDSL 262 (283)
Q Consensus 250 ~~Gv~fg~lf~~L 262 (283)
++|...|..+..+
T Consensus 129 l~G~~lg~~~~~~ 141 (144)
T cd03385 129 LGAALVAVLSALL 141 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 6
>cd03395 PAP2_like_4 PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=98.34 E-value=2e-05 Score=67.03 Aligned_cols=147 Identities=20% Similarity=0.131 Sum_probs=84.8
Q ss_pred hHHHhhc---ChhHHHHHHHHHHHHHHHHHHHH--HHHHHhcCc-hhHHH-HH-HH-H---HHHHHHHhhcccCCCCccc
Q 023353 116 LHRLLSS---SPQLNTLFAALNTAFVGMQTAYI--LWTWLIEGR-PRATI-SA-LF-M---FTFRGILGYSTQLPLPQGF 183 (283)
Q Consensus 116 lN~~l~e---n~~~~~~L~ilstl~vdm~~~Yi--l~~wv~~gr-~R~~i-A~-L~-~---f~~R~I~~~lt~Lp~P~gf 183 (283)
+-+++++ +|.+++.+..++.+........+ ++.|...++ .+..+ .. +. + .++-.+...++.-|+|...
T Consensus 9 l~~~i~~~~~~~~l~~~~~~it~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~ 88 (177)
T cd03395 9 LFLLLNGTLVHPLLDDLMPFLTGKKLSVPIFLLLALFILFRKGPIGLLILLLVLLAVGFADQLASGFLKPLVARLRPCNA 88 (177)
T ss_pred HHHHHhcCCCChhHHHHHHHHHCchhHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3344444 56888888888777544333233 233332333 22211 11 11 1 2455677889999999864
Q ss_pred ccCcCC-CCccccccceeechhhHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHH
Q 023353 184 LGSGMD-FPVGNVSFFLFYSGHVAGSVIASLDMR-RMHRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDS 261 (283)
Q Consensus 184 l~~~p~-fPyG~tSDFLFfSGHva~~vI~aLe~R-r~~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~ 261 (283)
...... +.....+++=|.|||++.++..+.-.- ..+++....+..+..++.++-=+....||--||++|.+.|..+..
T Consensus 89 ~~~~~~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~~~~~~~~~~~~~~v~~SRvylG~H~psDVl~G~~lG~~~~~ 168 (177)
T cd03395 89 LDGVRLVVLGDQGGSYSFASSHAANSFALALFIWLFFRRGLFSPVLLLWALLVGYSRVYVGVHYPGDVIAGALIGIISGL 168 (177)
T ss_pred ccccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHH
Confidence 322111 112222344589999999887654321 112212334445555556665566889999999999999998876
Q ss_pred h
Q 023353 262 L 262 (283)
Q Consensus 262 L 262 (283)
+
T Consensus 169 ~ 169 (177)
T cd03395 169 L 169 (177)
T ss_pred H
Confidence 6
No 7
>PRK11837 undecaprenyl pyrophosphate phosphatase; Provisional
Probab=98.30 E-value=2.4e-05 Score=69.42 Aligned_cols=152 Identities=14% Similarity=-0.010 Sum_probs=86.7
Q ss_pred hhcchHhHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----chhHH-H-HHHHHHHHHHH---HhhcccCCC
Q 023353 110 FIATRPLHRLLSSSPQLNTLFAALNTAFVGMQTAYILWTWLIEG-----RPRAT-I-SALFMFTFRGI---LGYSTQLPL 179 (283)
Q Consensus 110 F~aT~~lN~~l~en~~~~~~L~ilstl~vdm~~~Yil~~wv~~g-----r~R~~-i-A~L~~f~~R~I---~~~lt~Lp~ 179 (283)
......+|+..++++++...+..++.-.+-...+.++..|...+ +.|+. + .++.+.+...+ ...+++=|.
T Consensus 7 ~~lf~~in~~~~~~~~l~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~r~R 86 (202)
T PRK11837 7 LSLFSLINATPDSAPWMISLAIFIAKDLILIVPLLAVVLWLWGPRDQLTAQRQLVIKIAIALAISLLVSWTIGHLFPHDR 86 (202)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45667889988877777776665544222223333444444331 22222 2 12222233333 455667788
Q ss_pred CcccccCcCCCCccccccceeechhhHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHH
Q 023353 180 PQGFLGSGMDFPVGNVSFFLFYSGHVAGSVIASLDM-RRMHRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGIL 258 (283)
Q Consensus 180 P~gfl~~~p~fPyG~tSDFLFfSGHva~~vI~aLe~-Rr~~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~l 258 (283)
|........ .....+|+=|.|||++.++..++.+ ... +++...+..+..++.++-=+....||--||++|.+.|.+
T Consensus 87 P~~~~~~~~--~~~~~~~~SFPSgHa~~~~~~a~~~l~~~-~~~~~~~~~~~a~lva~SRVylGvHypsDVlgG~~lG~~ 163 (202)
T PRK11837 87 PFVEGIGYN--FLHHAADDSFPSDHGTVIFTFALAFLFWH-RLWSGSLLMAIAVAIAWSRVYLGVHWPLDMLGALLVGMI 163 (202)
T ss_pred CCCCccccc--cccCCCCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 853221110 1111233458999999988876532 222 223444555556666666666889999999999999998
Q ss_pred HHHhhh
Q 023353 259 FDSLAG 264 (283)
Q Consensus 259 f~~Lag 264 (283)
...+..
T Consensus 164 ~~~~~~ 169 (202)
T PRK11837 164 GCLSAQ 169 (202)
T ss_pred HHHHHH
Confidence 887743
No 8
>cd03392 PAP2_like_2 PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=98.30 E-value=3.9e-05 Score=64.90 Aligned_cols=146 Identities=24% Similarity=0.190 Sum_probs=84.6
Q ss_pred hHhHHHhhcC--hhHHHHHHHHHHHHH---HHHHHHHHHHHHhcCc-hhHHHHHH----HHHHHHHHHhhcccCCCCccc
Q 023353 114 RPLHRLLSSS--PQLNTLFAALNTAFV---GMQTAYILWTWLIEGR-PRATISAL----FMFTFRGILGYSTQLPLPQGF 183 (283)
Q Consensus 114 ~~lN~~l~en--~~~~~~L~ilstl~v---dm~~~Yil~~wv~~gr-~R~~iA~L----~~f~~R~I~~~lt~Lp~P~gf 183 (283)
+++.++++++ +.+...+..++.+.- .+...-++..|+.+++ .|..+..+ .-.+.-.+....+.-|.|...
T Consensus 14 ~~i~~~~~~~~~~~~~~~~~~it~lg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~ 93 (182)
T cd03392 14 QSVLSLLRSLRTPLLTAFMTAITFLGSPAVLLIIVLLLALLLLLKRRRRAALFLLLALLGGGALNTLLKLLVQRPRPPLH 93 (182)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 4455555553 456666666543221 1112222223343433 33332221 112445667778888999764
Q ss_pred ccCcCCCCccccccceeechhhHHHHHHHH-----HHhhhh----hhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHH
Q 023353 184 LGSGMDFPVGNVSFFLFYSGHVAGSVIASL-----DMRRMH----RWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVG 254 (283)
Q Consensus 184 l~~~p~fPyG~tSDFLFfSGHva~~vI~aL-----e~Rr~~----r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~ 254 (283)
... ...++=|.|||++.++..+. ..++.+ |.....+..+..+..++-=+....||--|+++|.+
T Consensus 94 ~~~-------~~~~~sfPSgHa~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sRv~lg~H~~sDvl~G~~ 166 (182)
T cd03392 94 LLV-------PEGGYSFPSGHAMGATVLYGFLAYLLARRLPRRRVRILLLILAAILILLVGLSRLYLGVHYPSDVLAGWL 166 (182)
T ss_pred ccC-------CCCCCCCCcHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 321 11223589999998876542 223322 22334455666777777778889999999999999
Q ss_pred HHHHHHHhhhhh
Q 023353 255 AGILFDSLAGKY 266 (283)
Q Consensus 255 fg~lf~~Lag~Y 266 (283)
.|..+..++-+.
T Consensus 167 lG~~~~~~~~~~ 178 (182)
T cd03392 167 LGLAWLALLILL 178 (182)
T ss_pred HHHHHHHHHHHH
Confidence 999988886654
No 9
>cd01610 PAP2_like PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.
Probab=98.04 E-value=4.7e-05 Score=57.53 Aligned_cols=95 Identities=26% Similarity=0.263 Sum_probs=67.8
Q ss_pred HHHHhhcccCCCCcccccCcC--CCCccccccceeechhhHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHh
Q 023353 168 RGILGYSTQLPLPQGFLGSGM--DFPVGNVSFFLFYSGHVAGSVIASLDMRRMHR-----WEMAWLFDVLNVLQAVRLLG 240 (283)
Q Consensus 168 R~I~~~lt~Lp~P~gfl~~~p--~fPyG~tSDFLFfSGHva~~vI~aLe~Rr~~r-----~~la~~~~i~nilQ~~~LL~ 240 (283)
=......+..|+|........ +.+....++.=|.|||++..+..+..+.+.-+ ++...+.....+..++--+.
T Consensus 19 ~~~~k~~~~~~rP~~~~~~~~~~~~~~~~~~~~sfPSgH~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sri~ 98 (122)
T cd01610 19 TGVLKYLFGRPRPYFLLRCGPDGDPLLLTEGGYSFPSGHAAFAFALALFLALLLPRRLLRLLLGLLLLLLALLVGLSRVY 98 (122)
T ss_pred HHHHHHHhCCCCCChHHhcCCccchhhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555577777776554432 12222222334899999999999876654443 25677778888888888888
Q ss_pred hccceeeehhhhHHHHHHHHHh
Q 023353 241 TRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 241 ~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
...||..|+++|...|+.+..+
T Consensus 99 ~g~H~~~Dv~~G~~lg~~~~~~ 120 (122)
T cd01610 99 LGVHYPSDVLAGALLGILVALL 120 (122)
T ss_pred hcccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 10
>cd03391 PAP2_containing_2_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a membrane-associated phosphatidic acid phosphatase.
Probab=98.04 E-value=0.00012 Score=62.37 Aligned_cols=137 Identities=16% Similarity=0.121 Sum_probs=78.9
Q ss_pred ChhHHHHHHHHHHHHHHH--HHHHHHHHHHhcCc-hhHHH-HHH----HHHHHHHHHhhcccCCCCcccccCcCCCCc-c
Q 023353 123 SPQLNTLFAALNTAFVGM--QTAYILWTWLIEGR-PRATI-SAL----FMFTFRGILGYSTQLPLPQGFLGSGMDFPV-G 193 (283)
Q Consensus 123 n~~~~~~L~ilstl~vdm--~~~Yil~~wv~~gr-~R~~i-A~L----~~f~~R~I~~~lt~Lp~P~gfl~~~p~fPy-G 193 (283)
..+++..+.+++.+.-.. ..+.++..|...++ .|... ..+ +-.++-.+....+.-|+|.... ++++. -
T Consensus 10 ~~~~~~~~~~~t~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~---~~~~~~~ 86 (159)
T cd03391 10 WGPVRPLVKLLELSGHGIPWLAGTISCLWISSSPAGQEVLVNLLLGLLLDIITVAILKALVRRRRPAYNS---PDMLDYV 86 (159)
T ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---Cccchhc
Confidence 345666677665543221 22333334544433 44432 111 1113345677788889997553 22221 1
Q ss_pred ccccceeechhhHHHHHHHHHHhh-hh-hhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHh
Q 023353 194 NVSFFLFYSGHVAGSVIASLDMRR-MH-RWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 194 ~tSDFLFfSGHva~~vI~aLe~Rr-~~-r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
..+++=|.|||++.++..+..+-. .+ +..+..+..+..+++++-=+....||--||++|.+.|.++..+
T Consensus 87 ~~~~~SFPSGHa~~a~a~a~~l~~~~~~~~~~~~~~~~~a~~v~~SRvylg~H~psDVlaG~~lG~~~~~~ 157 (159)
T cd03391 87 AVDKYSFPSGHASRAAFVARFLLNHLVLAVPLRVLLVLWATVVGISRVLLGRHHVLDVLAGAFLGYLEALL 157 (159)
T ss_pred cCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHh
Confidence 112224799999998777643321 11 1224455555666677666778999999999999999988765
No 11
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=98.01 E-value=4.4e-06 Score=64.87 Aligned_cols=71 Identities=24% Similarity=0.210 Sum_probs=53.1
Q ss_pred eechhhHHHHHHHHHHhhhhhhh------HHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHhhhhhHhhh
Q 023353 200 FYSGHVAGSVIASLDMRRMHRWE------MAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSLAGKYEQSK 270 (283)
Q Consensus 200 FfSGHva~~vI~aLe~Rr~~r~~------la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~Lag~Y~~~~ 270 (283)
|.|||++.++..+.-+.+.-+.+ +..+......+.++--+....||..|+++|.+.|..+..+..++.+.+
T Consensus 51 fPSgH~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~srv~~g~H~~~Dvi~G~~lg~~~~~~~~~~~~~~ 127 (129)
T PF01569_consen 51 FPSGHAAIAAAFAFFLAYYLGSRGWIRILLFLLAIVLAFLVALSRVYLGAHFFSDVIAGILLGILIAYLFYRVYKKR 127 (129)
T ss_dssp SS-HHHHHHHHHHHHHHHHCCCCHHHSEEHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHCCHCHHH
T ss_pred CcchhhhhHHHHHhhhhhhhhccccccchhhHHHHHHHHHhhcCEEEcCeEehHHHHHHHHHHHHHHHHHHHHhccc
Confidence 79999998887776442222222 334677778888888899999999999999999999999988765543
No 12
>cd03393 PAP2_like_3 PAP2_like_3 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria and archaea, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=97.95 E-value=5.3e-05 Score=61.18 Aligned_cols=96 Identities=22% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHhhcccCCCCcccccCcCCCCccccccceeechhhHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHhhccc
Q 023353 166 TFRGILGYSTQLPLPQGFLGSGMDFPVGNVSFFLFYSGHVAGSVIASLDM-RRMHRWEMAWLFDVLNVLQAVRLLGTRGH 244 (283)
Q Consensus 166 ~~R~I~~~lt~Lp~P~gfl~~~p~fPyG~tSDFLFfSGHva~~vI~aLe~-Rr~~r~~la~~~~i~nilQ~~~LL~~R~H 244 (283)
+.=.++...+.-|+|.......+-.... .+++=|.|||+++++..+..+ ...++++...+..+..+..++-=+....|
T Consensus 27 ~~~~~lK~~~~r~RP~~~~~~~~~~~~~-~~~~sFPSgHa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sRv~lg~H 105 (125)
T cd03393 27 YLNAALKEVFKIPRPFTYDGIQAIYEES-AGGYGFPSGHAQTSATFWGSLMLHVRKKWFTLIGVVLVVLISFSRLYLGVH 105 (125)
T ss_pred HHHHHHHHHHCCCCcCCCcccchhccCC-CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555666777778886432211101111 122248999998776543222 12222334444444455566655667899
Q ss_pred eeeehhhhHHHHHHHHHh
Q 023353 245 YTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 245 YTIDV~~Gv~fg~lf~~L 262 (283)
|-.||++|...|.....|
T Consensus 106 ~~sDVl~G~~lG~~~~~~ 123 (125)
T cd03393 106 WPSDVIGGVLIGLLVLVL 123 (125)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999988776
No 13
>cd03389 PAP2_lipid_A_1_phosphatase PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.
Probab=97.86 E-value=0.00059 Score=59.20 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=60.1
Q ss_pred HHHHHHhhcccCCCCcccccCcC-CC-C-ccccccceeechhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 023353 166 TFRGILGYSTQLPLPQGFLGSGM-DF-P-VGNVSFFLFYSGHVAGSVIASLDMRRMHRWEMAWLFDVLNVLQAVRLLGTR 242 (283)
Q Consensus 166 ~~R~I~~~lt~Lp~P~gfl~~~p-~f-P-yG~tSDFLFfSGHva~~vI~aLe~Rr~~r~~la~~~~i~nilQ~~~LL~~R 242 (283)
++-.+...++.=|.|........ .+ | ..+.+++=|.|||++.++..+..+-... ++.+....+..++.+.-=+...
T Consensus 83 ~i~~~lK~~~~R~RP~~~~~~~~~~~~~~~~~~~~~SFPSGHa~~a~~~~~~l~~~~-~~~~~~~~~~~~lv~~SRiylg 161 (186)
T cd03389 83 ILVNLLKFIIGRARPKLLFDDGLYGFDPFHADYAFTSFPSGHSATAGAAAAALALLF-PRYRWAFILLALLIAFSRVIVG 161 (186)
T ss_pred HHHHHHHHHHCCCCCChhhcCCcccccccccCCCCCCcCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcC
Confidence 44556777788899976432211 11 1 1122222479999999877764332111 1123334455556666667789
Q ss_pred cceeeehhhhHHHHHHHHHhh
Q 023353 243 GHYTIDLAVGVGAGILFDSLA 263 (283)
Q Consensus 243 ~HYTIDV~~Gv~fg~lf~~La 263 (283)
.||.-||++|.+.|..+..+.
T Consensus 162 ~H~~sDVl~G~~lG~~~~~~~ 182 (186)
T cd03389 162 AHYPSDVIAGSLLGAVTALAL 182 (186)
T ss_pred CcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 14
>cd03394 PAP2_like_5 PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=97.75 E-value=0.00015 Score=57.10 Aligned_cols=63 Identities=24% Similarity=0.207 Sum_probs=47.0
Q ss_pred eeechhhHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHH
Q 023353 199 LFYSGHVAGSVIASLDM-RRMHRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDS 261 (283)
Q Consensus 199 LFfSGHva~~vI~aLe~-Rr~~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~ 261 (283)
=|.|||++.++..+..+ ++.++++......+..++.+.-=+....||--||++|.++|+.+..
T Consensus 40 sfPSgHa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sRv~~g~H~~sDV~~G~~lG~~~~~ 103 (106)
T cd03394 40 SFPSGHTASAFAAATFLQYRYGWRWYGIPAYALASLVGASRVVANRHWLSDVLAGAAIGILVGY 103 (106)
T ss_pred ccCcHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHhee
Confidence 48999999887766433 3334335555566666777777778899999999999999988754
No 15
>COG0671 PgpB Membrane-associated phospholipid phosphatase [Lipid metabolism]
Probab=97.74 E-value=0.0016 Score=52.70 Aligned_cols=75 Identities=27% Similarity=0.235 Sum_probs=52.2
Q ss_pred cccceeechhhHHHHHHHHHHhhh--------hhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHhhhhh
Q 023353 195 VSFFLFYSGHVAGSVIASLDMRRM--------HRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSLAGKY 266 (283)
Q Consensus 195 tSDFLFfSGHva~~vI~aLe~Rr~--------~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~Lag~Y 266 (283)
.+++-|.|||++.+..++.-+... .+.....+..+..++.++-=+....||-.||++|...|.++..+.-+.
T Consensus 131 ~~~~sfPSgHt~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~~SRv~lGvH~~~DVi~G~~~g~~~~~~~~~~ 210 (232)
T COG0671 131 ASGYSFPSGHAAGAAAAALLLALLLPLRRALLRRVLLLILLLLLAALVGLSRVYLGVHYPSDVIGGALLGALAALLLLLL 210 (232)
T ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccchHHHhhHHHHHHHHHHHHHH
Confidence 344469999988777655322211 122234556666667777777889999999999999999998886665
Q ss_pred Hhh
Q 023353 267 EQS 269 (283)
Q Consensus 267 ~~~ 269 (283)
...
T Consensus 211 ~~~ 213 (232)
T COG0671 211 LRP 213 (232)
T ss_pred Hhc
Confidence 543
No 16
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=97.70 E-value=0.00078 Score=60.66 Aligned_cols=72 Identities=28% Similarity=0.274 Sum_probs=46.9
Q ss_pred CccccccceeechhhHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHhhhh
Q 023353 191 PVGNVSFFLFYSGHVAGSVIASLD-MRRMHRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSLAGK 265 (283)
Q Consensus 191 PyG~tSDFLFfSGHva~~vI~aLe-~Rr~~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~Lag~ 265 (283)
|.|+. +=|.|||++.++..+.. .++.+++.. ++.+...++++.-=+-...||--||++|...|.++.++-.+
T Consensus 114 p~~~~--~SFPSGHt~~af~~a~~l~~~~~~~~~-~~~l~lallVg~SRVYLGvHyPsDVLaG~liGil~~~lf~~ 186 (190)
T PRK09597 114 PYGGN--FNMPSGHSSMVGLAVAFLMRRYSFKKY-WWLLPLIPLTMLARIYLDMHTIGAVLAGLGVGMLCVSLFTS 186 (190)
T ss_pred CCCCC--CCCCcHHHHHHHHHHHHHHHHHchhHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 55432 34899999999765543 344333332 22233444555555556889999999999999998887443
No 17
>cd03388 PAP2_SPPase1 PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second messenger in the cell, and extracellularly by binding to G-protein coupled receptors of the endothelial differentiation gene family.
Probab=97.66 E-value=0.0016 Score=54.50 Aligned_cols=94 Identities=15% Similarity=0.035 Sum_probs=54.4
Q ss_pred HHHHHHhhcccCCCCcccccCcCCCCccccccceeechhhHHHHHHHHHH----hhh-hhh--hHHHHHHHHHHHHHHHH
Q 023353 166 TFRGILGYSTQLPLPQGFLGSGMDFPVGNVSFFLFYSGHVAGSVIASLDM----RRM-HRW--EMAWLFDVLNVLQAVRL 238 (283)
Q Consensus 166 ~~R~I~~~lt~Lp~P~gfl~~~p~fPyG~tSDFLFfSGHva~~vI~aLe~----Rr~-~r~--~la~~~~i~nilQ~~~L 238 (283)
++=.++...++-|+|+..--..... -...+++=|.|||++.++..+..+ +++ +++ .......+..++.++-=
T Consensus 47 ~~~~~lK~~~~r~RP~~~~~~~~~~-~~~~~~~SFPSgH~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~SR 125 (151)
T cd03388 47 YIGQFIKDLFCLPRPSSPPVVRLTM-SSAALEYGFPSTHAMNATAISFYLLIYLYDRYQYPFVLGLILALFYSTLVCLSR 125 (151)
T ss_pred HHHHHHHHHHcCCCcCCCchhhhhc-cccCCCCCCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 4445677888889998521000011 001234458999999988766422 222 111 12233334444444433
Q ss_pred HhhccceeeehhhhHHHHHHHH
Q 023353 239 LGTRGHYTIDLAVGVGAGILFD 260 (283)
Q Consensus 239 L~~R~HYTIDV~~Gv~fg~lf~ 260 (283)
+-...||-.||++|.+.|..+.
T Consensus 126 vylgvH~p~DVl~G~~lG~~~~ 147 (151)
T cd03388 126 IYMGMHSVLDVIAGSLIGVLIL 147 (151)
T ss_pred HHhCCCCHHHHHHHHHHHHHHH
Confidence 4467899999999999998765
No 18
>cd03382 PAP2_dolichyldiphosphatase PAP2_like proteins, dolichyldiphosphatase subfamily. Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is necessary for maintaining proper levels of dolichol-linked oligosaccharides and protein N-glycosylation, and might play a role in re-utilization of the glycosyl carrier lipid for additional rounds of lipid intermediate biosynthesis after its release during protein N-glycosylation reactions.
Probab=97.61 E-value=0.0025 Score=54.18 Aligned_cols=134 Identities=19% Similarity=0.098 Sum_probs=69.7
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH-HHHHHHH---HHHHHHhhcccCCCCcccccCcCCCCcccc
Q 023353 120 LSSSPQLNTLFAALNTAFVGMQTAYILWTWLIEGRPRAT-ISALFMF---TFRGILGYSTQLPLPQGFLGSGMDFPVGNV 195 (283)
Q Consensus 120 l~en~~~~~~L~ilstl~vdm~~~Yil~~wv~~gr~R~~-iA~L~~f---~~R~I~~~lt~Lp~P~gfl~~~p~fPyG~t 195 (283)
++++.-+.......+.+-.-....+++ |..++|.+.. ...+.+. +.=.++...++-|+|+..... ..
T Consensus 8 ~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~r~~~~~~~~~~~~~~~~~~~~lK~~~~rpRP~~~~~~-------~~ 78 (159)
T cd03382 8 YDPGDLLSFLLAYLSLLPVAILVGYAT--LILFRRELEAIYLFIGLLANEALNYVLKRIIKEPRPCSGAYF-------VR 78 (159)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCcC-------CC
Confidence 344444444444444444433344444 4555554432 2222222 334456677778999754321 22
Q ss_pred ccceeechhhHHHHH----HHHHH-hhhh-------hhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHh
Q 023353 196 SFFLFYSGHVAGSVI----ASLDM-RRMH-------RWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 196 SDFLFfSGHva~~vI----~aLe~-Rr~~-------r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
+++=|.|||+++++. ..+.. .+.+ ++.+..+..+..++++.-=+-...||--||++|...|..+..+
T Consensus 79 ~~~SFPSgHa~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~SRvylg~H~~~DVl~G~~lG~~~~~~ 157 (159)
T cd03382 79 SGYGMPSSHSQFMGFFAVYLLLFIYLRLGRLNSLVSRFLLSLGLLLLALLVSYSRVYLGYHTVSQVVVGAIVGILLGIL 157 (159)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 344589999976542 11211 1111 1112223334444444444456899999999999999887654
No 19
>cd03390 PAP2_containing_1_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.
Probab=97.55 E-value=0.0011 Score=57.28 Aligned_cols=100 Identities=22% Similarity=0.166 Sum_probs=56.7
Q ss_pred HHHHHHhhcccCCCCcccccCcCC------CCcc------------ccccceeechhhHHHHHHH----HHHh-hhhh--
Q 023353 166 TFRGILGYSTQLPLPQGFLGSGMD------FPVG------------NVSFFLFYSGHVAGSVIAS----LDMR-RMHR-- 220 (283)
Q Consensus 166 ~~R~I~~~lt~Lp~P~gfl~~~p~------fPyG------------~tSDFLFfSGHva~~vI~a----Le~R-r~~r-- 220 (283)
++-.++...+.-|+|..+.--.|+ .+++ +..++=|.|||++.++..+ +.++ +.++
T Consensus 60 ~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SFPSGHas~a~~~~~~l~l~l~~~~~~~~ 139 (193)
T cd03390 60 VITNVLKNYAGRPRPDFLARCFPDGGTPSDTLVGIDICCTGDPGVLKEGRKSFPSGHSSFAFAGLGFLSLYLAGKLHIFD 139 (193)
T ss_pred HHHHHHHHHhcCCCCcHHHHhCCCCCcccccccCCCeecCCCHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHhhccc
Confidence 456667777888999643111111 1111 0112248999999987543 2222 2111
Q ss_pred ---hhHH----HHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHhhhh
Q 023353 221 ---WEMA----WLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSLAGK 265 (283)
Q Consensus 221 ---~~la----~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~Lag~ 265 (283)
+..+ .+..+..++++.-=+....||--||++|.+.|..+..+.-|
T Consensus 140 ~~~~~~~~~~~~~~~~~a~~v~~SRi~~g~H~~sDVlaG~~lG~~~a~~~~~ 191 (193)
T cd03390 140 PRGSSWRLLLALLPLLLAILVAVSRTRDYRHHFSDVIAGSLIGLIIAYLSYR 191 (193)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHheeE
Confidence 1122 23344445555555556679999999999999988876544
No 20
>smart00014 acidPPc Acid phosphatase homologues.
Probab=97.41 E-value=0.0014 Score=51.34 Aligned_cols=94 Identities=20% Similarity=0.166 Sum_probs=58.2
Q ss_pred HHHhhcccCCCCcccccC----cCCCCccccccceeechhhHHHHHHHHHHhhh-----hhhhHHHHHHHHHHHHHHHHH
Q 023353 169 GILGYSTQLPLPQGFLGS----GMDFPVGNVSFFLFYSGHVAGSVIASLDMRRM-----HRWEMAWLFDVLNVLQAVRLL 239 (283)
Q Consensus 169 ~I~~~lt~Lp~P~gfl~~----~p~fPyG~tSDFLFfSGHva~~vI~aLe~Rr~-----~r~~la~~~~i~nilQ~~~LL 239 (283)
.+....+.-|+|....+. ..+.+....+++=|.|||+++++.++..+... ++.....+..+..+..+.-=+
T Consensus 12 ~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~~sfPSgHa~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sRi 91 (116)
T smart00014 12 GVIKNYFGRPRPFFLDIGDACCTPNFLLTLEAGYSFPSGHTAFAFAFALFLLLYLPARAARKLLIILLLLLALVVGFSRV 91 (116)
T ss_pred HHHHHHhCCCCcCcccccccccCcchhhhcCCCCCcChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666543211 11112222233348999999987776544221 122233456666777777777
Q ss_pred hhccceeeehhhhHHHHHHHHHh
Q 023353 240 GTRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 240 ~~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
....||-.|+++|...|.....+
T Consensus 92 ~~g~H~~~Dv~~G~~lG~~v~~~ 114 (116)
T smart00014 92 YLGAHWPSDVLAGSLLGILIAAV 114 (116)
T ss_pred HhcccCHHHHHHHHHHHHHHHHH
Confidence 78889999999999999987654
No 21
>cd03383 PAP2_diacylglycerolkinase PAP2_like proteins, diacylglycerol_kinase like sub-family. In some prokaryotes, PAP2_like phosphatase domains appear fused to E. coli DAGK-like trans-membrane diacylglycerol kinase domains. The cellular function of these architectures remains to be determined.
Probab=97.35 E-value=0.0021 Score=52.53 Aligned_cols=63 Identities=22% Similarity=0.165 Sum_probs=46.3
Q ss_pred eechhhHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHh
Q 023353 200 FYSGHVAGSVIASLDM-RRMHRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 200 FfSGHva~~vI~aLe~-Rr~~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
|.|||+++++-.+..+ ...++++...+..++.++.+.-=+-...||--||++|...|..+..+
T Consensus 41 FPSgHt~~a~a~a~~l~~~~~~~~~~~~~~~~a~lv~~SRvylg~H~psDVlaG~~lG~~~~~~ 104 (109)
T cd03383 41 MPSGHAAIAFSIATAISLITNNPIISILSVLLAVMVAHSRVEMKIHTMWEVVVGAILGALITLL 104 (109)
T ss_pred CChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 7999999988777543 22223445566666777777666777999999999999999876654
No 22
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=97.18 E-value=0.0091 Score=55.42 Aligned_cols=70 Identities=21% Similarity=0.092 Sum_probs=43.2
Q ss_pred cceeechhhHHHHHHHH----HHhhhhhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHhhhhh
Q 023353 197 FFLFYSGHVAGSVIASL----DMRRMHRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSLAGKY 266 (283)
Q Consensus 197 DFLFfSGHva~~vI~aL----e~Rr~~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~Lag~Y 266 (283)
+|=|.|||+.+++..++ -+...+++....+..+..+..++-=+....||-.||++|...|..+..++-+.
T Consensus 156 gySFPSGHa~~a~~~~l~~~~ll~~~~~~~~~~~~~~wa~~v~~SRvyLGvH~psDVlaG~llG~~~~~l~~~l 229 (244)
T PRK10699 156 GFAFPSGHTMFAASWALLAVGLLWPRRRYKTVALLMLWATGVMGSRLLLGMHWPRDLVVATLISWLLVTVATWL 229 (244)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999998864332 12222222233333444445555445568999999999988888776665543
No 23
>cd03396 PAP2_like_6 PAP2_like_6 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which mainly contains bacterial proteins, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=97.07 E-value=0.012 Score=51.12 Aligned_cols=96 Identities=21% Similarity=0.084 Sum_probs=58.1
Q ss_pred HHHHhhcccCCCCcccccCcCC---------CCccccccceeechhhHHHHHHHH---HHhh-hhh--hhHHHHHHHHHH
Q 023353 168 RGILGYSTQLPLPQGFLGSGMD---------FPVGNVSFFLFYSGHVAGSVIASL---DMRR-MHR--WEMAWLFDVLNV 232 (283)
Q Consensus 168 R~I~~~lt~Lp~P~gfl~~~p~---------fPyG~tSDFLFfSGHva~~vI~aL---e~Rr-~~r--~~la~~~~i~ni 232 (283)
=.++...+.-|.|........+ .+.+..++.=|.|||++..+..+. ..++ .++ +....+..+..+
T Consensus 83 ~~~lK~~~~r~RP~~~~~~gg~~~~~~~~~~~~~~~~~~~SFPSGHas~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (197)
T cd03396 83 VAILKSHWGRPRPWDLTEFGGDAPYTPLFSGPSNGCGKGCSFPSGHASAGFALLALYFLFRRRRPRLARLVLAAGLALGA 162 (197)
T ss_pred HHHHHhhcCCCChhhHHHhCCCCCCCcccccCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4556778888999764321111 112222222489999999876431 2232 221 122223344555
Q ss_pred HHHHHHHhhccceeeehhhhHHHHHHHHHhh
Q 023353 233 LQAVRLLGTRGHYTIDLAVGVGAGILFDSLA 263 (283)
Q Consensus 233 lQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~La 263 (283)
..++-=+..-.||--|+++|.+++++...+.
T Consensus 163 ~vg~sRi~~G~Hf~SDvl~g~~ig~~~~~~~ 193 (197)
T cd03396 163 LMGLARMARGAHFLSDVLWSLLLVWLIALLL 193 (197)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 6666667788999999999999999877664
No 24
>cd03384 PAP2_wunen PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors.
Probab=96.98 E-value=0.0056 Score=51.67 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=37.5
Q ss_pred eeechhhHHHHHHHH----HH-hhhhh---hhHHH----HHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHh
Q 023353 199 LFYSGHVAGSVIASL----DM-RRMHR---WEMAW----LFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 199 LFfSGHva~~vI~aL----e~-Rr~~r---~~la~----~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
=|.|||.++++..+. .+ ++.+. +..+. +..+..+++++-=+..+.||.-||++|..+|..+..+
T Consensus 73 SFPSGHs~~a~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~~a~~v~~sRv~~~~H~~sDviaG~~lG~~~~~~ 148 (150)
T cd03384 73 SFPSGHASLSMYAAVFLALYLQARLKLRGSRLLRPLLQFLLLALALYVGLSRISDYKHHWSDVLAGALLGSVIALF 148 (150)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhHhhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999874432 12 22221 11222 2333333444333445569999999999999887643
No 25
>PLN02250 lipid phosphate phosphatase
Probab=96.53 E-value=0.093 Score=50.34 Aligned_cols=64 Identities=23% Similarity=0.163 Sum_probs=38.0
Q ss_pred eeechhhHHHHHHHH----HH-hhhh----hhh-HHHHHHHHHHHHHHHHHhhcc----ceeeehhhhHHHHHHHHHh
Q 023353 199 LFYSGHVAGSVIASL----DM-RRMH----RWE-MAWLFDVLNVLQAVRLLGTRG----HYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 199 LFfSGHva~~vI~aL----e~-Rr~~----r~~-la~~~~i~nilQ~~~LL~~R~----HYTIDV~~Gv~fg~lf~~L 262 (283)
=|.|||+++++.+.. .+ .|.+ +.. .+.+..++-++-++.+-++|+ ||--||++|.+.|..+..+
T Consensus 162 SFPSGHSS~afa~~~fLslyL~~kl~~~~~~~~~~r~~l~~lpll~A~lVa~SRI~dy~Hh~sDVlaG~lIG~~~A~~ 239 (314)
T PLN02250 162 SFPSGHTSWSFAGLGFLSLYLSGKIRVFDRRGHVAKLCIVFLPLLVAALVGVSRVDDYWHHWQDVFAGALIGLTVASF 239 (314)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHH
Confidence 479999998766553 11 1111 111 122222233344555556666 9999999999988776666
No 26
>cd03380 PAP2_like_1 PAP2_like_1 proteins, a sub-family of PAP2, containing bacterial acid phosphatase, vanadium chloroperoxidases and vanadium bromoperoxidases.
Probab=96.47 E-value=0.031 Score=48.93 Aligned_cols=114 Identities=17% Similarity=0.052 Sum_probs=63.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhcccCCCCcccccCcCC---CCccccccce
Q 023353 123 SPQLNTLFAALNTAFVGMQTAYILWTWLIEGRPRATISALFMFTFRGILGYSTQLPLPQGFLGSGMD---FPVGNVSFFL 199 (283)
Q Consensus 123 n~~~~~~L~ilstl~vdm~~~Yil~~wv~~gr~R~~iA~L~~f~~R~I~~~lt~Lp~P~gfl~~~p~---fPyG~tSDFL 199 (283)
..+...+++.++..+.|...+.-...+ .++|+|+.-+.-. .|.... .+-.....
T Consensus 88 ~~~~~~~~~~l~~a~~da~~~~~~~K~-~~~r~RP~~~~~~--------------------~~~~~~~~~~~~~~~~S-- 144 (209)
T cd03380 88 EERTPRLYALLARALTDAGIATWDAKY-HYNRPRPFVAIRL--------------------QWLPICTPEEGTPKHPS-- 144 (209)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCchhhhcc--------------------CCCcccCCCCCCCCCCC--
Confidence 345566677777777777654433333 4466666433210 011000 11122234
Q ss_pred eechhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHH
Q 023353 200 FYSGHVAGSVIASLDMRRMHRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFD 260 (283)
Q Consensus 200 FfSGHva~~vI~aLe~Rr~~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~ 260 (283)
|.|||+...+.++..+...-..+...+ .......+.-=+....||--||.+|..+|....
T Consensus 145 fPSGHa~~a~a~a~~l~~~~~~~~~~~-~~~a~~~~~SRv~~G~H~~sDv~aG~~lG~~i~ 204 (209)
T cd03380 145 YPSGHATFGGAAALVLAELFPERAAEL-LARAAEAGNSRVVAGVHWPSDVEAGRILGEAIA 204 (209)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCCeecHHHHHHHHHHHHHHH
Confidence 799999999887766543321222222 233334444445668999999999999998654
No 27
>PLN02715 lipid phosphate phosphatase
Probab=96.33 E-value=0.18 Score=48.83 Aligned_cols=103 Identities=19% Similarity=0.120 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCcccccC-cCCC--Cccc--------------cccceeechhhHHHHHHHHHH-----hh
Q 023353 160 SALFMFTFRGILGYSTQLPLPQGFLGS-GMDF--PVGN--------------VSFFLFYSGHVAGSVIASLDM-----RR 217 (283)
Q Consensus 160 A~L~~f~~R~I~~~lt~Lp~P~gfl~~-~p~f--PyG~--------------tSDFLFfSGHva~~vI~aLe~-----Rr 217 (283)
++++..++-.++.+.+--|.|+ |++. .|+. ++.. -.+.=|.|||+++++-+...+ ++
T Consensus 131 al~~t~lit~~lK~~vGRpRPd-fl~rC~Pd~~~~~~~l~~~iCt~~~~~l~dg~~SFPSGHSS~sfagl~~Lsl~L~~k 209 (327)
T PLN02715 131 AVLITGVITDSIKVATGRPRPN-FYWRCFPDGKELYDALGGVICHGKAAEVKEGHKSFPSGHTSWSFAGLTFLSLYLSGK 209 (327)
T ss_pred HHHHHHHHHHHHHHhhCCCCCC-chhhcCccccccccccccccccCccccccccCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 3444445566677777778885 3332 2221 1110 112247999998776655322 12
Q ss_pred hhh-----hhHHHHHHHHHHHHHHHHHhhcc----ceeeehhhhHHHHHHHHHhh
Q 023353 218 MHR-----WEMAWLFDVLNVLQAVRLLGTRG----HYTIDLAVGVGAGILFDSLA 263 (283)
Q Consensus 218 ~~r-----~~la~~~~i~nilQ~~~LL~~R~----HYTIDV~~Gv~fg~lf~~La 263 (283)
.+. +-.+.+..++-++-++.+-..|+ ||--||++|.+.|..+..++
T Consensus 210 l~~~~~~~~~~k~~l~~lpll~A~lIalSRv~Dy~Hh~sDVlaG~lLG~~~a~~~ 264 (327)
T PLN02715 210 IKAFNGEGHVAKLCLVIFPLLAACLVGISRVDDYWHHWQDVFAGALIGILVAAFC 264 (327)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 111 11122222333444455555665 99999999999998887763
No 28
>PLN02525 phosphatidic acid phosphatase family protein
Probab=96.17 E-value=0.12 Score=50.23 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=51.1
Q ss_pred HHHhhcccCCCCcccccCcCCCC---ccccccceeechhhHHHHHHHHH-----Hhhhh--hhhHHH----HHHHHHHHH
Q 023353 169 GILGYSTQLPLPQGFLGSGMDFP---VGNVSFFLFYSGHVAGSVIASLD-----MRRMH--RWEMAW----LFDVLNVLQ 234 (283)
Q Consensus 169 ~I~~~lt~Lp~P~gfl~~~p~fP---yG~tSDFLFfSGHva~~vI~aLe-----~Rr~~--r~~la~----~~~i~nilQ 234 (283)
+.+-..+..|+|..--......+ .-..+.|=|.|||++.++..+.. .++.+ ..+... +..+..+++
T Consensus 52 ~~lKd~v~rPRP~~pp~~ri~~~~~~~~~a~eYsFPSgHt~nA~av~~~ll~~l~~~~~~~~~~~~~~~~~l~~l~allV 131 (352)
T PLN02525 52 NCIKDVVSAPRPSCPPVRRVTATKDEEENAMEYGLPSSHTLNTVCLSGYLLHYVLSYLQNVDASVIFAGLALFCLLVALV 131 (352)
T ss_pred HHHHHhhcCCCcCCcchhhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 45677888899964110000001 01112334899999877766521 12121 111111 122233333
Q ss_pred HHHHHhhccceeeehhhhHHHHHHHHHh
Q 023353 235 AVRLLGTRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 235 ~~~LL~~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
++==+-...||-.||++|.+.|..+..+
T Consensus 132 ~~SRlYLGvH~psDVl~G~~lG~~i~~~ 159 (352)
T PLN02525 132 GFGRLYLGMHSPIDIIAGLAIGLVILAF 159 (352)
T ss_pred HHHHHheeccCHHHHHHHHHHHHHHHHH
Confidence 3333346789999999999999987765
No 29
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=96.01 E-value=0.047 Score=50.28 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=52.7
Q ss_pred HHHHHhhcccCCCCcccccCcC-----------CCCccc-cccceeechhhHHHHHHHHH--------Hhh-hhhhhH--
Q 023353 167 FRGILGYSTQLPLPQGFLGSGM-----------DFPVGN-VSFFLFYSGHVAGSVIASLD--------MRR-MHRWEM-- 223 (283)
Q Consensus 167 ~R~I~~~lt~Lp~P~gfl~~~p-----------~fPyG~-tSDFLFfSGHva~~vI~aLe--------~Rr-~~r~~l-- 223 (283)
.=.+.-+.++-|+|..+..+.. -+|... ++. =|.|||+.+++..... .++ .++++.
T Consensus 30 ln~vlK~ii~r~RP~~~~~~~~~~~~~~~p~~~~~~l~c~tgy-sfPSGHam~a~a~~~~l~~~l~~~~~~r~~~~~~~~ 108 (235)
T cd03381 30 LNLVFKWILFGQRPYWWVHETDYYSNSSVPKIEQFPLTCETGP-GSPSGHAMGTTAVLLVMVTALLSHLAGRKRSRFLRV 108 (235)
T ss_pred HHHHHHHHhCCCCCCchhcccccccccccccccccccccCCCC-CCCcHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH
Confidence 3445566777788865433311 122221 233 4899998877643321 111 111222
Q ss_pred --HHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHHHh
Q 023353 224 --AWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 224 --a~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
..++.++.+..++-=+-...||--||++|+..|.....+
T Consensus 109 ~~~~~~~~~~~~V~~SRvYLgvHfpsDVlaG~~lGi~~~~~ 149 (235)
T cd03381 109 MLWLVFWGVQLAVCLSRIYLAAHFPHQVIAGVISGIAVAET 149 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 222333344444444556789999999999999887766
No 30
>PLN02731 Putative lipid phosphate phosphatase
Probab=95.93 E-value=0.12 Score=50.12 Aligned_cols=98 Identities=17% Similarity=0.089 Sum_probs=53.9
Q ss_pred HHHHHHHhhcccCCCCcccccC-cCCC--Cccc--------------cccceeechhhHHHHHHHH----HH-hhhh---
Q 023353 165 FTFRGILGYSTQLPLPQGFLGS-GMDF--PVGN--------------VSFFLFYSGHVAGSVIASL----DM-RRMH--- 219 (283)
Q Consensus 165 f~~R~I~~~lt~Lp~P~gfl~~-~p~f--PyG~--------------tSDFLFfSGHva~~vI~aL----e~-Rr~~--- 219 (283)
.++=.++.+.+.-|.|+ |++. .|+. +++. -...=|.|||+++++.+.. .+ ++.+
T Consensus 130 ~liT~ilK~~vGRpRPd-fl~rC~P~~~~~~~~~~~~iCt~~~~~l~dg~~SFPSGHSS~sfagl~fLslyL~~kl~~~~ 208 (333)
T PLN02731 130 AVLTDAIKNAVGRPRPD-FFWRCFPDGKALYDSLGDVICHGDKSVIREGHKSFPSGHTSWSFSGLGFLSLYLSGKIQAFD 208 (333)
T ss_pred HHHHHHHHHHhCCCCCC-chhhcCccccccccccccceecCchhcccccCCCCCchhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 35556667777778885 3332 2221 1111 0111479999998665542 22 1111
Q ss_pred --hhhHHHHHHHHHHHHHHHHHhhcc----ceeeehhhhHHHHHHHHHhh
Q 023353 220 --RWEMAWLFDVLNVLQAVRLLGTRG----HYTIDLAVGVGAGILFDSLA 263 (283)
Q Consensus 220 --r~~la~~~~i~nilQ~~~LL~~R~----HYTIDV~~Gv~fg~lf~~La 263 (283)
.+..+.+..++-++-++.+-+.|+ ||--||++|.+.|..+..+.
T Consensus 209 ~~~~~~rl~l~~lpll~A~lIalSRV~Dy~Hh~sDVlaG~lLG~~iA~~~ 258 (333)
T PLN02731 209 GKGHVAKLCIVILPLLFAALVGISRVDDYWHHWQDVFAGGLLGLAISTIC 258 (333)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 011122222333444555555665 99999999999988877663
No 31
>cd03397 PAP2_acid_phosphatase PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.
Probab=94.29 E-value=0.2 Score=45.38 Aligned_cols=59 Identities=14% Similarity=0.015 Sum_probs=38.2
Q ss_pred eechhhHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHHH
Q 023353 200 FYSGHVAGSVIASLDMRRM-HRWEMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILFD 260 (283)
Q Consensus 200 FfSGHva~~vI~aLe~Rr~-~r~~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf~ 260 (283)
|.|||+...+..++.+... ++++..+ .......+.-=+..-.||--||.+|...|....
T Consensus 152 fPSGHa~~a~a~a~~La~~~p~~~~~l--~~~a~~~g~SRv~~GvH~psDV~aG~~lG~~~~ 211 (232)
T cd03397 152 YPSGHTAAGYAWALILAELVPERADEI--LARGSEYGQSRIVCGVHWPSDVMGGRIMAAALV 211 (232)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHH
Confidence 7999999988777544222 2222222 222333444445668999999999999988654
No 32
>cd03398 PAP2_haloperoxidase PAP2, haloperoxidase_like subfamily. Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles.
Probab=93.54 E-value=1.1 Score=40.27 Aligned_cols=127 Identities=20% Similarity=0.053 Sum_probs=67.2
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhcc-cCCCCcccccCcCCCCcccccccee
Q 023353 122 SSPQLNTLFAALNTAFVGMQTAYILWTWLIEGRPRATISALFMFTFRGILGYST-QLPLPQGFLGSGMDFPVGNVSFFLF 200 (283)
Q Consensus 122 en~~~~~~L~ilstl~vdm~~~Yil~~wv~~gr~R~~iA~L~~f~~R~I~~~lt-~Lp~P~gfl~~~p~fPyG~tSDFLF 200 (283)
+..+...+++.++..+.|...+.-...+ .+.|+|+.-+. |......- .-.+.++|.... |-....+ |
T Consensus 80 ~~~~~~~~~a~l~~a~~da~ia~~~~K~-~~~r~RP~~~~------~~~~~~~~~~~~~~~~w~p~~---~~p~~ps--y 147 (232)
T cd03398 80 SLFRTARLFAAVNAAMTDAGIAAWDAKY-HYRRWRPVTAI------RLADTDGNPATEADPYWLPLA---GTPPHPS--Y 147 (232)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCccCHHHHH------HhhcccCCCCCCCCCcccccC---CCCCCCC--C
Confidence 4455667778888888887655444444 56888887543 21110000 001111122111 1112234 7
Q ss_pred echhhHHHHHHHHHHhhh-hhh--------------------hHHHHHHHHHHHHHHHHHhhccceeeehhhhHHHHHHH
Q 023353 201 YSGHVAGSVIASLDMRRM-HRW--------------------EMAWLFDVLNVLQAVRLLGTRGHYTIDLAVGVGAGILF 259 (283)
Q Consensus 201 fSGHva~~vI~aLe~Rr~-~r~--------------------~la~~~~i~nilQ~~~LL~~R~HYTIDV~~Gv~fg~lf 259 (283)
.|||+.+...++..++.. ++. ....+ .......+.==+..-+||--|+.+|..+|..+
T Consensus 148 PSGHa~~a~a~a~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~SRvy~GvH~~sDv~~G~~lG~~v 226 (232)
T cd03398 148 PSGHATFAGAAATVLKALFGSDKVPDTVSEPDEGGPSTGVTRVWAEL-NELADEVAISRVYAGVHFRSDDAAGAALGEQI 226 (232)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCCCCccccccCCCCCCCcccHhHH-HHHHHHHHHHHHhccccChHHHHHHHHHHHHH
Confidence 999999888887655422 110 11112 12222222222345689999999999998765
Q ss_pred HH
Q 023353 260 DS 261 (283)
Q Consensus 260 ~~ 261 (283)
..
T Consensus 227 a~ 228 (232)
T cd03398 227 GA 228 (232)
T ss_pred HH
Confidence 43
No 33
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=92.48 E-value=1.7 Score=42.14 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=39.5
Q ss_pred eechhhHHHHHHHHHH-----hhhhhh---hHHH-HHHHHHHHHHHHHHhhc----cceeeehhhhHHHHHHHHHhhhhh
Q 023353 200 FYSGHVAGSVIASLDM-----RRMHRW---EMAW-LFDVLNVLQAVRLLGTR----GHYTIDLAVGVGAGILFDSLAGKY 266 (283)
Q Consensus 200 FfSGHva~~vI~aLe~-----Rr~~r~---~la~-~~~i~nilQ~~~LL~~R----~HYTIDV~~Gv~fg~lf~~Lag~Y 266 (283)
|+|||.++++-+++.. +|..+. ++.. +..+.-++-++.+=..| -|==-||++|.+.|..+....-+|
T Consensus 181 FPSGHsS~s~y~~~flalyl~~~~~~~~~~rllr~~l~f~~l~~A~~v~lSRV~DYkHHwsDV~aG~liG~~~A~~~~~~ 260 (317)
T KOG3030|consen 181 FPSGHSSFSFYAMGFLALYLQARLFWFGRGRLLRPLLQFLPLMLALLVGLSRVSDYKHHWSDVLAGALIGAFVAYFLYRY 260 (317)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHeeehhcccccccHHHHHHHHHHHHHHHHHHhh
Confidence 7999999998776422 222222 1222 22222333333333444 355669999999999888885444
No 34
>KOG4268 consensus Uncharacterized conserved protein containing PAP2 domain [Function unknown]
Probab=87.40 E-value=1.4 Score=39.99 Aligned_cols=27 Identities=26% Similarity=0.181 Sum_probs=22.5
Q ss_pred hhccceeeehhhhHHHHHHHHHhhhhh
Q 023353 240 GTRGHYTIDLAVGVGAGILFDSLAGKY 266 (283)
Q Consensus 240 ~~R~HYTIDV~~Gv~fg~lf~~Lag~Y 266 (283)
..--||.-||.+|.|.||+=..|+.+.
T Consensus 153 ~lGRHyvtDVlaG~fiGylearl~l~~ 179 (189)
T KOG4268|consen 153 MLGRHYVTDVLAGFFIGYLEARLVLLV 179 (189)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334599999999999999998887654
No 35
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=41.04 E-value=2.1e+02 Score=31.19 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=14.1
Q ss_pred hhccceeeehhhhHHHHHHH
Q 023353 240 GTRGHYTIDLAVGVGAGILF 259 (283)
Q Consensus 240 ~~R~HYTIDV~~Gv~fg~lf 259 (283)
..-.+|-||-.+|...-.-+
T Consensus 479 ~~Gln~GIDFtGGt~i~v~~ 498 (758)
T PRK13023 479 NIGFNYGIDFRGGSMVELQA 498 (758)
T ss_pred hcCCCCCeEecCceEEEEEe
Confidence 33478999999987655443
No 36
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=34.74 E-value=61 Score=25.27 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=28.1
Q ss_pred chhhhcchHhHHHhhcChhHHHHHHHHHHHHHHHHH
Q 023353 107 DLGFIATRPLHRLLSSSPQLNTLFAALNTAFVGMQT 142 (283)
Q Consensus 107 D~gF~aT~~lN~~l~en~~~~~~L~ilstl~vdm~~ 142 (283)
|-.-.+.+...+|.++|||..-..++.-++++.+++
T Consensus 56 ~~~~~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 56 EQAREAAEQTEDYVRENPWQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 344566788999999999999888887777776543
No 37
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=31.18 E-value=5e+02 Score=25.21 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=65.7
Q ss_pred CccccccccchhhHHHHhhhhhHHHHHhhhHhhhhheeeeeeccCCCCCCcchhhhcchHhHHHhhc---ChhHHHHHHH
Q 023353 56 NGRASFLSWTLQDAVYVARHHWIPCVFAMGLLFFMGVEYTLRMVPDSSPPFDLGFIATRPLHRLLSS---SPQLNTLFAA 132 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~h~~~~~f~~g~l~~m~~ey~~~mv~~~~~i~D~gF~aT~~lN~~l~e---n~~~~~~L~i 132 (283)
...|.|+ +.+.+..+++.-..-.++++|+-+.+ + ++..|.++-+.-.+-.|... +..+.-.+++
T Consensus 26 ~~~~~f~--~~~n~~~il~~~~~~~ilAlg~~lv~---~--------~G~idls~ga~~~lgay~~a~l~~~g~~~~lai 92 (344)
T PRK15432 26 FLDRQYL--SLQTLTMVFSSAQILILLAIGATLVM---L--------TRNIDVSVGSITGLCAVLVGMLLNAGYSLPVAC 92 (344)
T ss_pred HHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH---H--------hCCccHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3467888 77889999999888888898887765 1 34679999888777766532 1011112333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH-HHHHHHhhcccC
Q 023353 133 LNTAFVGMQTAYILWTWLIEGRPRATISALFMF-TFRGILGYSTQL 177 (283)
Q Consensus 133 lstl~vdm~~~Yil~~wv~~gr~R~~iA~L~~f-~~R~I~~~lt~L 177 (283)
+-++.+....-.+....+..-|.+.+++.+.+. +.+++...++.-
T Consensus 93 ~~all~g~l~G~l~G~lv~~lrl~~~i~tl~t~~~~~gi~~~~~~~ 138 (344)
T PRK15432 93 LATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGG 138 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 333333333333333333333666665554444 778777766643
No 38
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=30.13 E-value=1.6e+02 Score=26.32 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHhhcccCCCCcccc-------cCcCCCCccc---cccceeechhhHHHH------HHHHHHhhhh
Q 023353 156 RATISALFMFTFRGILGYSTQLPLPQGFL-------GSGMDFPVGN---VSFFLFYSGHVAGSV------IASLDMRRMH 219 (283)
Q Consensus 156 R~~iA~L~~f~~R~I~~~lt~Lp~P~gfl-------~~~p~fPyG~---tSDFLFfSGHva~~v------I~aLe~Rr~~ 219 (283)
....+.+.+.+.=...+..+.+-+-+.|+ ..+=+||-+. +.||+|||==+|+++ +..-+|||.-
T Consensus 84 ~~~la~~tv~~sW~~ih~~FAl~YA~~yy~~~~~~~~~gl~FP~~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~v 163 (180)
T PF07077_consen 84 HIALALATVVLSWLLIHTVFALHYAHLYYRSRGGGEPGGLDFPGDWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLV 163 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcCCCCCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHH
Confidence 33444554555555555555555555555 1133688333 679999998888776 3345666654
Q ss_pred hhhHHHHHHHHHH
Q 023353 220 RWEMAWLFDVLNV 232 (283)
Q Consensus 220 r~~la~~~~i~ni 232 (283)
..=+++++++|-
T Consensus 164 -l~hsllSF~Fnt 175 (180)
T PF07077_consen 164 -LLHSLLSFFFNT 175 (180)
T ss_pred -HHHHHHHHHHHH
Confidence 222344555553
No 39
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=29.46 E-value=2.5e+02 Score=32.91 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=22.8
Q ss_pred HHHhhhHhhhhheeeeeeccCC----CCCCcchhhhcchHhHHHhhcC
Q 023353 80 CVFAMGLLFFMGVEYTLRMVPD----SSPPFDLGFIATRPLHRLLSSS 123 (283)
Q Consensus 80 ~~f~~g~l~~m~~ey~~~mv~~----~~~i~D~gF~aT~~lN~~l~en 123 (283)
++++.+.+..++.+-+++.+.. -+=.-|-.=+..+++..-+.+.
T Consensus 945 VlltLg~LsLlGitLTLpgIAGIILlIGmAVDdnIVIfERIREELr~G 992 (1403)
T PRK12911 945 LLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLS 992 (1403)
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHhhcCCEEEehHHHHHHHcC
Confidence 4455566666666666665521 0112344445666666665543
No 40
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=28.73 E-value=57 Score=33.34 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 023353 220 RWEMAWLFDVLNVLQAVRLLG 240 (283)
Q Consensus 220 r~~la~~~~i~nilQ~~~LL~ 240 (283)
|++|+++|++++++|..+++.
T Consensus 22 ~YYlryfFlF~SLIQ~LIIlg 42 (442)
T PF06637_consen 22 WYYLRYFFLFVSLIQFLIILG 42 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999987664
No 41
>COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=24.67 E-value=2.2e+02 Score=28.27 Aligned_cols=97 Identities=26% Similarity=0.355 Sum_probs=59.0
Q ss_pred hhhHhhhhheeeeeeccCCCCCCcchhhhcchHh-------HHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 023353 83 AMGLLFFMGVEYTLRMVPDSSPPFDLGFIATRPL-------HRLLSSSPQLNTLFAALNTAFVGMQTAYILWTWLIEGRP 155 (283)
Q Consensus 83 ~~g~l~~m~~ey~~~mv~~~~~i~D~gF~aT~~l-------N~~l~en~~~~~~L~ilstl~vdm~~~Yil~~wv~~gr~ 155 (283)
+..++.|=.+. +=|..+|+==-+|--+...+.+ +.++.-+| -...+.++.+.+.++-.+|+|++.+..
T Consensus 53 a~STv~FQTvT-NNRILTPSImG~dsLY~liQt~lvf~FG~~~~~~~~~----~~~Fl~~l~~mvlFsl~Ly~~lf~~~~ 127 (316)
T COG4605 53 AVSTVLFQTVT-NNRILTPSIMGFDSLYMLIQTLLVFFFGAASLLALNP----NLNFLLELVVMVLFSLLLYYWLFSGGG 127 (316)
T ss_pred HHHHHhhhhhc-cCcccCchhccHHHHHHHHHHHHHheeccceeeeeCc----hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444443333 2255666665566655555443 33333343 344566777878899999999999765
Q ss_pred hHHHHHH-----HHHHHHHHHhhcccCCCCcccc
Q 023353 156 RATISAL-----FMFTFRGILGYSTQLPLPQGFL 184 (283)
Q Consensus 156 R~~iA~L-----~~f~~R~I~~~lt~Lp~P~gfl 184 (283)
|-...++ +=-.+|.++.-.-.+=-|++|-
T Consensus 128 r~l~~~lLiGlv~G~lFrSiSsfmq~liDPneF~ 161 (316)
T COG4605 128 RDLHLLLLIGLVLGTLFRSISSFMQRLIDPNEFA 161 (316)
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 5544433 3337788887777777787765
No 42
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=24.63 E-value=2.8e+02 Score=24.58 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=32.0
Q ss_pred heeeeeeccCCCCCCcchhhhc----chHh-HHHhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 023353 91 GVEYTLRMVPDSSPPFDLGFIA----TRPL-HRLLSSSPQLNTLFAALNTAFVGMQTAYILWT 148 (283)
Q Consensus 91 ~~ey~~~mv~~~~~i~D~gF~a----T~~l-N~~l~en~~~~~~L~ilstl~vdm~~~Yil~~ 148 (283)
+.||.++.+|-.+-.+=.|-+. +.+. .+.+.+.+..+++...+.+.++-+.+..+.+.
T Consensus 48 ~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~f~~~~~~~ri~V~lAGP~~NlilA~i~~~ 110 (182)
T cd06163 48 ETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRSFNSKPVWQRILIVFAGPLANFLLAIVLFA 110 (182)
T ss_pred CeEEEEEEEEeccEEEecCCCcccccccccchHHHccCCcchhhhhhhhHHHHHHHHHHHHHH
Confidence 4577777777543211000000 1122 23455556678888888888888877666544
No 43
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=22.11 E-value=3.3e+02 Score=27.82 Aligned_cols=150 Identities=22% Similarity=0.220 Sum_probs=83.2
Q ss_pred cccccchhhHHHHhhhhhHHHHHhhhHhhh-hheeeeeeccCCCCCCcchhhh---cchHhHHHhhcChhHHHHHHHHHH
Q 023353 60 SFLSWTLQDAVYVARHHWIPCVFAMGLLFF-MGVEYTLRMVPDSSPPFDLGFI---ATRPLHRLLSSSPQLNTLFAALNT 135 (283)
Q Consensus 60 ~~~~~~~~~~~~~~~~h~~~~~f~~g~l~~-m~~ey~~~mv~~~~~i~D~gF~---aT~~lN~~l~en~~~~~~L~ilst 135 (283)
-|+ +|+.+.+.++..-.-...++|.++- ++-|-.+-+ .| =.||. +----+++...+-.+.-..+++.+
T Consensus 46 ~~l--~p~Nl~NL~~Q~S~i~imA~GMvlVIv~g~IDLSV---GS---v~gllGaiaail~v~~~~~~~gw~~~vtii~~ 117 (394)
T COG4214 46 VFL--SPRNLSNLLRQNSIIGILALGMVLVIVAGEIDLSV---GS---VLGLLGAIAAILDVKWGLPWLGWPLPVTIIVT 117 (394)
T ss_pred eEe--ccchHHHHHHhhhHHHHHHhcceEEEEeccccccH---HH---HHHHHHHHHHHHhhhccccccCccHHHHHHHH
Confidence 466 7888888888877778888887653 222211110 00 00111 000111111222224456677788
Q ss_pred HHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhhcccC----CCCcccccCcCCCCccccccce-eechhhHHHH
Q 023353 136 AFVGMQTAYILWTWLIE-GRPRATISALFMFTFRGILGYSTQL----PLPQGFLGSGMDFPVGNVSFFL-FYSGHVAGSV 209 (283)
Q Consensus 136 l~vdm~~~Yil~~wv~~-gr~R~~iA~L~~f~~R~I~~~lt~L----p~P~gfl~~~p~fPyG~tSDFL-FfSGHva~~v 209 (283)
+.+.-..=-.=.+|.-| +=|-...-+.-|.++|++++.++.- |.|++|---.. |-..|.+ +-.|-++.+.
T Consensus 118 l~~G~liGa~~G~~iay~~vPSFIVTLaGmLvfrGl~~~v~~g~ti~P~~~~f~~ig~----g~ip~~~~~~~~~v~~~~ 193 (394)
T COG4214 118 LVLGGLIGAWQGFWIAYLKVPSFIVTLAGMLVFRGLTLGVTGGTTVAPYPSTFSLIGQ----GFLPAILGWILGLVALAA 193 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHhHHHHHHhhhhEEeeCCcccCCCCcHHHHhhc----ccccchHHHHHHHHHHHH
Confidence 88877644444455555 4466666777888999999887765 55554332111 1122221 4567777788
Q ss_pred HHHHHHhhhhhh
Q 023353 210 IASLDMRRMHRW 221 (283)
Q Consensus 210 I~aLe~Rr~~r~ 221 (283)
+.+..+|++.++
T Consensus 194 ~v~~~~r~R~~r 205 (394)
T COG4214 194 IVFAGLRGRRRR 205 (394)
T ss_pred HHHHHHHHHHHH
Confidence 888888665544
No 44
>PRK11285 araH L-arabinose transporter permease protein; Provisional
Probab=21.25 E-value=7.3e+02 Score=23.74 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=65.2
Q ss_pred ccccccccchhhHHHHhhhhhHHHHHhhhHhhhhheeeeeeccCCCCCCcchhhhcchHhHHHhhcC---hhHHHHHHHH
Q 023353 57 GRASFLSWTLQDAVYVARHHWIPCVFAMGLLFFMGVEYTLRMVPDSSPPFDLGFIATRPLHRLLSSS---PQLNTLFAAL 133 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~h~~~~~f~~g~l~~m~~ey~~~mv~~~~~i~D~gF~aT~~lN~~l~en---~~~~~~L~il 133 (283)
..|.|+ +.+.+.++++.-....+.++|.-+-+. ++..|..|-.+-.+=.|...- ....-.++++
T Consensus 46 ~~p~f~--s~~n~~~il~~~~~~~i~a~g~~~vi~-----------~G~idLS~ga~~~l~a~~~~~~~~~~~~~~~all 112 (333)
T PRK11285 46 FVPNFA--SFINMKGLGLAISMIGMVACTMLFCLA-----------SGDFDLSVASVVAFAGVVTAVVINATESLWLGVA 112 (333)
T ss_pred hCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hCCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 468898 677888899998888888998777662 357899988777766665321 0111123344
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHH-HHHHHHHhhcc
Q 023353 134 NTAFVGMQTAYILWTWLIEGRPRATISALFM-FTFRGILGYST 175 (283)
Q Consensus 134 stl~vdm~~~Yil~~wv~~gr~R~~iA~L~~-f~~R~I~~~lt 175 (283)
-++.+....-.+....+.+-+.-.+++.+.+ ++.|++....+
T Consensus 113 ~al~~g~l~G~~~g~lv~~l~i~~~I~TLg~~~i~~gl~~~~~ 155 (333)
T PRK11285 113 AGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIIS 155 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHc
Confidence 4444444433333333444344556666555 48898876654
No 45
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.33 E-value=2.8e+02 Score=19.41 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Q 023353 126 LNTLFAALNTAFVGMQTAYILWTWLIEGRPRAT 158 (283)
Q Consensus 126 ~~~~L~ilstl~vdm~~~Yil~~wv~~gr~R~~ 158 (283)
+.+.+..+.++++ +.+++.+++|+++++.++-
T Consensus 6 ~~~~~~~~~~v~~-~~~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 6 LQGFARSIGTVLF-FVFFIGIVIWAYRPRNKKR 37 (49)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHcccchhh
Confidence 4455556666655 4455566777777665543
Done!