Query 023353
Match_columns 283
No_of_seqs 42 out of 44
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 05:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2t_A Acid phosphatase; all a 97.1 0.0046 1.6E-07 53.7 11.0 90 171-262 114-207 (231)
2 2ipb_A PHON protein, class A n 97.0 0.009 3.1E-07 51.7 11.9 90 171-262 102-195 (230)
3 1up8_A Vanadium-dependent brom 94.6 1.1 3.6E-05 45.5 16.1 186 65-262 324-571 (598)
4 1qi9_A Protein (vanadium bromo 87.1 2.8 9.5E-05 42.0 9.8 30 233-262 475-504 (556)
5 3bb0_A Vanadium chloroperoxida 54.7 22 0.00074 36.0 6.6 21 239-259 491-511 (609)
6 3u6r_L Antibody 1:7 (light cha 24.0 16 0.00056 28.8 0.0 28 36-63 116-143 (143)
7 3uc0_A Envelope protein; dengu 18.4 39 0.0013 29.3 1.2 34 30-63 131-165 (165)
8 2xqy_A GH, envelope glycoprote 15.5 33 0.0011 34.7 0.0 33 31-63 539-572 (572)
9 4b19_A PEPA1; toxin, toxin apo 14.1 1.1E+02 0.0038 19.8 2.2 20 246-265 8-27 (30)
10 3uze_C Envelope protein; dengu 10.5 65 0.0022 27.3 0.4 25 39-63 115-139 (139)
No 1
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=97.07 E-value=0.0046 Score=53.67 Aligned_cols=90 Identities=11% Similarity=-0.087 Sum_probs=53.8
Q ss_pred HhhcccCCCCcccccCcCCCCc-c--ccccceeechhhHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHHhhcccee
Q 023353 171 LGYSTQLPLPQGFLGSGMDFPV-G--NVSFFLFYSGHVAGSVIASLDMRR-MHRWEMAWLFDVLNVLQAVRLLGTRGHYT 246 (283)
Q Consensus 171 ~~~lt~Lp~P~gfl~~~p~fPy-G--~tSDFLFfSGHva~~vI~aLe~Rr-~~r~~la~~~~i~nilQ~~~LL~~R~HYT 246 (283)
....+.-|+|........-.|. . ..+++=|.|||+...+..+..+.. .++++ .......+..+.-=+....||-
T Consensus 114 lK~~~~r~RP~~~~~~~~~~p~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~~--~~~~~~a~~v~~SRvylGvH~p 191 (231)
T 1d2t_A 114 AKDHYMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEINPQRQ--NEILKRGYELGQSRVICGYHWQ 191 (231)
T ss_dssp HHHHHCCCCHHHHHTCCCSCC--CCCCCSSCCSSCHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhCCCCcCccCCCCceecCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCcCH
Confidence 4456677888765421111121 1 122334899999988776643321 11121 2233444555555566789999
Q ss_pred eehhhhHHHHHHHHHh
Q 023353 247 IDLAVGVGAGILFDSL 262 (283)
Q Consensus 247 IDV~~Gv~fg~lf~~L 262 (283)
-||++|...|..+..+
T Consensus 192 sDVlaG~~lG~~~~~~ 207 (231)
T 1d2t_A 192 SDVDAARVVGSAVVAT 207 (231)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988766
No 2
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=96.97 E-value=0.009 Score=51.71 Aligned_cols=90 Identities=13% Similarity=-0.047 Sum_probs=54.5
Q ss_pred HhhcccCCCCcccccCcCCCCcc---ccccceeechhhHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHhhcccee
Q 023353 171 LGYSTQLPLPQGFLGSGMDFPVG---NVSFFLFYSGHVAGSVIASLDMRRM-HRWEMAWLFDVLNVLQAVRLLGTRGHYT 246 (283)
Q Consensus 171 ~~~lt~Lp~P~gfl~~~p~fPyG---~tSDFLFfSGHva~~vI~aLe~Rr~-~r~~la~~~~i~nilQ~~~LL~~R~HYT 246 (283)
+-..+.-|.|........-.|.. ..+++=|.|||++..+..+..+... ++++. ...+..+..++-=+....||-
T Consensus 102 lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~~~--~~~~~a~~v~~SRv~~G~H~~ 179 (230)
T 2ipb_A 102 AKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHDAYSTLLALVLSQARPERAQ--ELARRGWEFGQSRVICGAHWQ 179 (230)
T ss_dssp HHHHHCCCCHHHHTTCCCSCGGGHHHHHTSCCSSCHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhCCCCcCccCCCCeeccCcccCCCCCCCcChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCcccH
Confidence 34456668887654332112210 1123348999999988766433221 11111 223444556666667889999
Q ss_pred eehhhhHHHHHHHHHh
Q 023353 247 IDLAVGVGAGILFDSL 262 (283)
Q Consensus 247 IDV~~Gv~fg~lf~~L 262 (283)
-||++|.+.|..+..+
T Consensus 180 sDVlaG~~lG~~~~~~ 195 (230)
T 2ipb_A 180 SDVDAGRYVGAVEFAR 195 (230)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887765
No 3
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=94.62 E-value=1.1 Score=45.49 Aligned_cols=186 Identities=15% Similarity=-0.014 Sum_probs=98.7
Q ss_pred chhhHHHHhhh-hhHHHHH-hhhHhhhhheeeeeeccCCCCCCcchhhhcch-HhHHHh--hcChhHHHHHHHHHHHHHH
Q 023353 65 TLQDAVYVARH-HWIPCVF-AMGLLFFMGVEYTLRMVPDSSPPFDLGFIATR-PLHRLL--SSSPQLNTLFAALNTAFVG 139 (283)
Q Consensus 65 ~~~~~~~~~~~-h~~~~~f-~~g~l~~m~~ey~~~mv~~~~~i~D~gF~aT~-~lN~~l--~en~~~~~~L~ilstl~vd 139 (283)
++.|+++.+-. ++--..| +|-.|+-++. +.|.|.-... .+..-- ...-....+++.++-.+.|
T Consensus 324 t~Rdla~~~h~d~~~~a~~nA~lILL~~r~------------p~dpg~p~~~~~i~~~~~g~t~lg~a~llaLl~~A~~D 391 (598)
T 1up8_A 324 TIRDLATWVHFDALYEAYLNACLILLANGV------------PFDPNLPFQQEDKLDNQDVFVNFGSAHVLSLVTEVATR 391 (598)
T ss_dssp BHHHHHHHHHHCCTTHHHHHHHHHHHHTTC------------CBCTTSTTCSCHHHHSEECBTTBSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccccHHHHHHHHHHHHHhcCC------------CCCCCCCccchHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 67899998877 6655555 7777776652 2333322111 010000 0111245677777777777
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHH---------------------HHhhc---------ccCCCCcccccCcC-
Q 023353 140 MQTAYILWTWLIEGRPRATISALFMFTFRG---------------------ILGYS---------TQLPLPQGFLGSGM- 188 (283)
Q Consensus 140 m~~~Yil~~wv~~gr~R~~iA~L~~f~~R~---------------------I~~~l---------t~Lp~P~gfl~~~p- 188 (283)
...+---..|.++.++|+.--.-.+..+|. ++.+. ...++-+.+-...|
T Consensus 392 AlIAaW~aK~~vy~r~RP~t~~g~i~aIr~~~~~g~~~~p~~~al~~~ls~~L~~v~~~n~~q~~~g~~~d~~w~pLLp~ 471 (598)
T 1up8_A 392 ALKAVRYQKFNIHRRLRPEATGGLISVNKIAAQKGESIFPEVDLAVEELGDILEKAEISNRKQNIADGDPDPDPSFLLPM 471 (598)
T ss_dssp HHHHHHHHHHTTTCBCCHHHHHHHHHHHHHHHHTTCCCCGGGHHHHHHCHHHHHHHHHHHHHHHHHTTCSSCCCCCCCCB
T ss_pred HHHHHHHHHHHHhcCcCcchhcchhHHHHhhhccccccCcchhhhhhhhhhhhhhhccccccccccccccCCCcCccccc
Confidence 775544445555677888752222223332 00000 00011122323334
Q ss_pred CCCccccccceeechhhHHHHHHHHHHhhhhhhh--------------------------HHHHHHHHHHHHHHHHHhhc
Q 023353 189 DFPVGNVSFFLFYSGHVAGSVIASLDMRRMHRWE--------------------------MAWLFDVLNVLQAVRLLGTR 242 (283)
Q Consensus 189 ~fPyG~tSDFLFfSGHva~~vI~aLe~Rr~~r~~--------------------------la~~~~i~nilQ~~~LL~~R 242 (283)
.||.|.-.++=|.|||...+.-++..++..-... +.-.+.......++==+..-
T Consensus 472 a~~egtP~~pSYPSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~SRVYlG 551 (598)
T 1up8_A 472 AFAEGSPFHPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAG 551 (598)
T ss_dssp SSTTCSCSSCSSSCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHHhheee
Confidence 4566655555689999999888887664431110 00112233333333344567
Q ss_pred cceeeehhhhHHHHHHHHHh
Q 023353 243 GHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 243 ~HYTIDV~~Gv~fg~lf~~L 262 (283)
+||--|+.+|...|..+...
T Consensus 552 VHypSDVlAG~~LG~aVa~~ 571 (598)
T 1up8_A 552 VHYFSDQFESLLLGEQVAIG 571 (598)
T ss_dssp SCCHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHH
Confidence 99999999999988765544
No 4
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=87.11 E-value=2.8 Score=42.04 Aligned_cols=30 Identities=20% Similarity=-0.012 Sum_probs=22.5
Q ss_pred HHHHHHHhhccceeeehhhhHHHHHHHHHh
Q 023353 233 LQAVRLLGTRGHYTIDLAVGVGAGILFDSL 262 (283)
Q Consensus 233 lQ~~~LL~~R~HYTIDV~~Gv~fg~lf~~L 262 (283)
..++-=+..-+||--||++|...|..+...
T Consensus 475 lIg~SRVYlGVHYPSDVlaG~lLG~~va~~ 504 (556)
T 1qi9_A 475 NVAFGRQMLGIHYRFDGIQGLLLGETITVR 504 (556)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHeeCccCHHHHHHHHHHHHHHHHH
Confidence 333333456799999999999999877655
No 5
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=54.68 E-value=22 Score=36.00 Aligned_cols=21 Identities=19% Similarity=0.031 Sum_probs=17.1
Q ss_pred HhhccceeeehhhhHHHHHHH
Q 023353 239 LGTRGHYTIDLAVGVGAGILF 259 (283)
Q Consensus 239 L~~R~HYTIDV~~Gv~fg~lf 259 (283)
+..-+||--|+.+|..+|...
T Consensus 491 IY~GVHypsDv~aG~~lG~~~ 511 (609)
T 3bb0_A 491 IFLGVHWRFDAAAARDILIPT 511 (609)
T ss_dssp HHTTSSCHHHHSCHHHHBCBC
T ss_pred heeeeeCHHHHHHHHHHHHhh
Confidence 345689999999999988655
No 6
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=23.98 E-value=16 Score=28.82 Aligned_cols=28 Identities=25% Similarity=0.314 Sum_probs=0.0
Q ss_pred ccccceeeecccccCCCCCCCccccccc
Q 023353 36 ATKGAVEIIGGKKMGNGGSGNGRASFLS 63 (283)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (283)
-...+||.-+|..+|.||+.|+.|.|-|
T Consensus 116 ~~~~~~e~g~~~~~~~~~~~~~~~~~~~ 143 (143)
T 3u6r_L 116 WSHPQFEKGGGSGGGSGGGSWSHPQFEK 143 (143)
T ss_dssp ----------------------------
T ss_pred ccCCceeccCCcCCCCCCCcccCccccC
Confidence 3566888877877777788899998864
No 7
>3uc0_A Envelope protein; dengue antibody membrane fusion, viral protein-immune system; 2.71A {Dengue virus 4}
Probab=18.39 E-value=39 Score=29.31 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=0.0
Q ss_pred ccccccc-cccceeeecccccCCCCCCCccccccc
Q 023353 30 DSYYRAA-TKGAVEIIGGKKMGNGGSGNGRASFLS 63 (283)
Q Consensus 30 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (283)
|....++ ...|.|--+|..+|.||+.|+.|.|-|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (165)
T 3uc0_A 131 DDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK 165 (165)
T ss_dssp -----------------------------------
T ss_pred cCcccccccCccccccCCCCCCCCCCcccCccccC
Confidence 3444444 566788878877788788899998854
No 8
>2xqy_A GH, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Suid herpesvirus}
Probab=15.54 E-value=33 Score=34.69 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=0.0
Q ss_pred cccccc-cccceeeecccccCCCCCCCccccccc
Q 023353 31 SYYRAA-TKGAVEIIGGKKMGNGGSGNGRASFLS 63 (283)
Q Consensus 31 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (283)
....++ ...|.|--+|..+|.||+.|+.|.|-|
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (572)
T 2xqy_A 539 DDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK 572 (572)
T ss_dssp ----------------------------------
T ss_pred CcccccCCCccccccCCCCCCCCCCCCCCccccC
Confidence 334444 556778777877888888899998864
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=14.07 E-value=1.1e+02 Score=19.80 Aligned_cols=20 Identities=10% Similarity=0.095 Sum_probs=16.5
Q ss_pred eeehhhhHHHHHHHHHhhhh
Q 023353 246 TIDLAVGVGAGILFDSLAGK 265 (283)
Q Consensus 246 TIDV~~Gv~fg~lf~~Lag~ 265 (283)
.=-+++|++.+++-+||..|
T Consensus 8 ia~visGcivalF~hWL~~r 27 (30)
T 4b19_A 8 IAPVISGCAIAFFSYWLSRR 27 (30)
T ss_dssp TTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34578999999999999876
No 10
>3uze_C Envelope protein; dengue antibody neutralization, immune system; HET: EPE; 2.04A {Dengue virus 3}
Probab=10.51 E-value=65 Score=27.28 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=0.0
Q ss_pred cceeeecccccCCCCCCCccccccc
Q 023353 39 GAVEIIGGKKMGNGGSGNGRASFLS 63 (283)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (283)
.|.|--+|..+|.|++.|+.|.|-|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
T 3uze_C 115 PQFEKGGGSGGGSGGGSWSHPQFEK 139 (139)
T ss_dssp -------------------------
T ss_pred ccccccCCCCCCCCCCcccCccccC
Confidence 3455555656666677788888753
Done!