Query 023354
Match_columns 283
No_of_seqs 364 out of 2127
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 100.0 2.6E-35 5.6E-40 258.5 11.9 198 57-256 5-244 (258)
2 COG1126 GlnQ ABC-type polar am 100.0 3.4E-29 7.4E-34 211.6 13.3 172 69-240 15-225 (240)
3 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.4E-29 7.3E-34 219.0 12.8 188 55-249 5-236 (254)
4 COG1125 OpuBA ABC-type proline 100.0 9.8E-29 2.1E-33 213.2 13.0 179 55-241 2-226 (309)
5 COG4559 ABC-type hemin transpo 100.0 1.7E-28 3.7E-33 206.6 13.3 187 68-254 13-244 (259)
6 COG2274 SunT ABC-type bacterio 100.0 1.1E-28 2.4E-33 244.7 13.9 197 45-241 462-697 (709)
7 COG1135 AbcC ABC-type metal io 100.0 1.2E-28 2.7E-33 217.9 12.0 185 56-240 3-231 (339)
8 KOG0058 Peptide exporter, ABC 100.0 3E-28 6.4E-33 235.5 14.4 192 50-241 461-692 (716)
9 COG3638 ABC-type phosphate/pho 100.0 2.8E-28 6E-33 208.5 11.8 194 55-250 4-246 (258)
10 COG1122 CbiO ABC-type cobalt t 100.0 6E-28 1.3E-32 211.1 11.6 187 54-241 3-229 (235)
11 COG3839 MalK ABC-type sugar tr 99.9 9.5E-28 2.1E-32 218.3 11.4 170 71-242 18-225 (338)
12 COG3842 PotA ABC-type spermidi 99.9 4.3E-27 9.3E-32 215.1 13.0 183 56-242 7-228 (352)
13 COG4604 CeuD ABC-type enteroch 99.9 6.9E-27 1.5E-31 194.9 11.0 187 67-253 12-238 (252)
14 COG0378 HypB Ni2+-binding GTPa 99.9 1.9E-26 4.1E-31 192.3 10.6 183 82-273 14-199 (202)
15 KOG0055 Multidrug/pheromone ex 99.9 4E-26 8.7E-31 231.7 14.4 195 47-241 343-577 (1228)
16 PRK09536 btuD corrinoid ABC tr 99.9 3.8E-26 8.3E-31 214.4 12.5 191 56-248 5-236 (402)
17 COG1118 CysA ABC-type sulfate/ 99.9 6.9E-26 1.5E-30 200.2 13.3 171 69-241 15-228 (345)
18 COG1127 Ttg2A ABC-type transpo 99.9 5.8E-26 1.3E-30 194.7 12.4 186 53-240 7-235 (263)
19 COG1136 SalX ABC-type antimicr 99.9 8.2E-26 1.8E-30 195.0 12.9 162 69-230 18-221 (226)
20 COG1131 CcmA ABC-type multidru 99.9 7.9E-26 1.7E-30 204.6 13.2 171 68-239 17-225 (293)
21 COG4555 NatA ABC-type Na+ tran 99.9 4.1E-26 8.9E-31 190.8 9.9 175 67-242 13-224 (245)
22 TIGR02314 ABC_MetN D-methionin 99.9 5.4E-26 1.2E-30 209.7 11.7 184 57-240 4-230 (343)
23 KOG0057 Mitochondrial Fe/S clu 99.9 6.8E-26 1.5E-30 212.9 11.3 193 47-240 344-574 (591)
24 TIGR00101 ureG urease accessor 99.9 2.1E-25 4.7E-30 191.1 13.5 193 82-274 2-195 (199)
25 KOG0055 Multidrug/pheromone ex 99.9 2E-25 4.4E-30 226.6 15.4 191 49-240 982-1213(1228)
26 COG2884 FtsE Predicted ATPase 99.9 2.1E-25 4.5E-30 185.1 12.1 151 55-206 2-169 (223)
27 COG0411 LivG ABC-type branched 99.9 6.3E-26 1.4E-30 195.1 8.8 172 70-241 18-240 (250)
28 COG1124 DppF ABC-type dipeptid 99.9 1.6E-25 3.5E-30 192.6 11.0 170 70-240 21-231 (252)
29 COG1132 MdlB ABC-type multidru 99.9 2.3E-25 5E-30 218.8 13.7 190 51-241 325-553 (567)
30 COG0410 LivF ABC-type branched 99.9 3E-25 6.6E-30 189.6 11.6 173 69-241 16-227 (237)
31 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.3E-25 5E-30 223.3 12.6 187 52-240 449-673 (686)
32 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 3.7E-25 8E-30 222.6 12.6 188 52-240 475-700 (710)
33 COG1116 TauB ABC-type nitrate/ 99.9 2.6E-25 5.7E-30 192.5 9.8 154 69-227 16-207 (248)
34 PRK11174 cysteine/glutathione 99.9 5E-25 1.1E-29 217.2 13.1 185 53-240 348-572 (588)
35 TIGR03375 type_I_sec_LssB type 99.9 7.8E-25 1.7E-29 219.7 14.4 189 52-241 461-689 (694)
36 PRK11650 ugpC glycerol-3-phosp 99.9 5.5E-25 1.2E-29 204.2 12.1 171 69-241 17-225 (356)
37 PRK13637 cbiO cobalt transport 99.9 9.8E-25 2.1E-29 197.2 13.4 184 57-240 5-234 (287)
38 TIGR01186 proV glycine betaine 99.9 7.8E-25 1.7E-29 203.2 12.8 172 69-240 6-219 (363)
39 PRK13537 nodulation ABC transp 99.9 6.9E-25 1.5E-29 199.8 11.8 183 55-240 8-227 (306)
40 COG4987 CydC ABC-type transpor 99.9 1.4E-24 3.1E-29 203.9 14.0 186 54-240 336-561 (573)
41 COG4988 CydD ABC-type transpor 99.9 2.6E-24 5.7E-29 204.4 15.3 186 53-240 319-543 (559)
42 PRK13650 cbiO cobalt transport 99.9 2E-24 4.4E-29 194.3 13.8 186 56-241 6-230 (279)
43 cd03261 ABC_Org_Solvent_Resist 99.9 1.1E-24 2.4E-29 191.1 11.7 170 70-239 14-225 (235)
44 COG1137 YhbG ABC-type (unclass 99.9 3.7E-25 8.1E-30 184.9 7.6 180 69-248 17-236 (243)
45 PRK11176 lipid transporter ATP 99.9 2.3E-24 4.9E-29 212.3 14.2 189 52-240 339-567 (582)
46 PRK11153 metN DL-methionine tr 99.9 1.3E-24 2.8E-29 201.0 11.7 182 58-239 5-229 (343)
47 TIGR03265 PhnT2 putative 2-ami 99.9 1E-24 2.2E-29 202.2 11.0 180 57-240 7-224 (353)
48 PRK11432 fbpC ferric transport 99.9 1.3E-24 2.9E-29 201.2 11.7 182 55-240 7-226 (351)
49 PRK10851 sulfate/thiosulfate t 99.9 2E-24 4.3E-29 200.2 12.2 169 70-240 16-226 (353)
50 TIGR00958 3a01208 Conjugate Tr 99.9 1.4E-24 3.1E-29 218.1 12.1 188 52-240 476-702 (711)
51 TIGR01188 drrA daunorubicin re 99.9 4.3E-24 9.3E-29 194.3 14.0 170 69-239 6-212 (302)
52 PRK13634 cbiO cobalt transport 99.9 3E-24 6.5E-29 194.3 12.6 184 57-240 5-235 (290)
53 PRK13647 cbiO cobalt transport 99.9 5E-24 1.1E-28 191.3 13.5 181 56-237 6-224 (274)
54 PRK13536 nodulation factor exp 99.9 4E-24 8.8E-29 197.2 13.0 184 54-240 41-261 (340)
55 PRK11160 cysteine/glutathione 99.9 2.7E-24 5.8E-29 211.5 12.5 188 52-240 336-562 (574)
56 TIGR01193 bacteriocin_ABC ABC- 99.9 2.8E-24 6E-29 216.2 12.9 188 51-240 470-697 (708)
57 COG4175 ProV ABC-type proline/ 99.9 4.8E-24 1E-28 189.1 12.6 172 70-241 42-255 (386)
58 COG4618 ArpD ABC-type protease 99.9 1.8E-24 3.9E-29 201.8 10.4 204 40-243 320-563 (580)
59 cd03256 ABC_PhnC_transporter A 99.9 2.9E-24 6.2E-29 188.9 11.1 170 69-238 14-232 (241)
60 PRK13651 cobalt transporter AT 99.9 4.1E-24 8.9E-29 194.6 12.5 185 57-241 5-255 (305)
61 PRK13646 cbiO cobalt transport 99.9 5.4E-24 1.2E-28 192.3 13.1 184 58-241 6-236 (286)
62 PRK13635 cbiO cobalt transport 99.9 6.5E-24 1.4E-28 191.1 13.6 186 55-240 6-229 (279)
63 PRK13631 cbiO cobalt transport 99.9 5.4E-24 1.2E-28 195.0 13.0 188 53-240 20-265 (320)
64 TIGR02315 ABC_phnC phosphonate 99.9 1.6E-23 3.5E-28 184.4 15.6 180 58-238 5-233 (243)
65 PRK13643 cbiO cobalt transport 99.9 5.4E-24 1.2E-28 192.4 12.7 184 57-240 4-233 (288)
66 PRK09452 potA putrescine/sperm 99.9 4.1E-24 8.9E-29 199.4 11.6 183 55-241 15-235 (375)
67 PRK13652 cbiO cobalt transport 99.9 8.7E-24 1.9E-28 190.0 13.0 182 58-240 7-227 (277)
68 PRK13636 cbiO cobalt transport 99.9 1.1E-23 2.4E-28 189.9 13.3 185 55-240 6-231 (283)
69 PRK13640 cbiO cobalt transport 99.9 1.6E-23 3.5E-28 188.7 14.2 186 55-240 6-232 (282)
70 cd03263 ABC_subfamily_A The AB 99.9 6.1E-24 1.3E-28 184.4 10.9 177 59-236 5-217 (220)
71 TIGR01288 nodI ATP-binding ABC 99.9 7.6E-24 1.6E-28 192.8 11.9 181 57-240 7-224 (303)
72 TIGR00960 3a0501s02 Type II (G 99.9 6.2E-24 1.4E-28 184.0 10.8 149 59-207 6-171 (216)
73 PRK13648 cbiO cobalt transport 99.9 2.1E-23 4.5E-28 186.8 14.5 186 55-240 8-231 (269)
74 PRK13632 cbiO cobalt transport 99.9 1.9E-23 4.1E-28 187.3 14.1 187 54-240 7-231 (271)
75 PRK13548 hmuV hemin importer A 99.9 2.5E-23 5.4E-28 185.2 14.7 182 59-242 7-232 (258)
76 TIGR03258 PhnT 2-aminoethylpho 99.9 6.5E-24 1.4E-28 197.3 11.2 183 55-241 6-229 (362)
77 PRK13644 cbiO cobalt transport 99.9 8.6E-24 1.9E-28 189.8 11.5 182 59-241 6-225 (274)
78 cd03258 ABC_MetN_methionine_tr 99.9 1.9E-23 4.1E-28 183.0 13.3 181 58-238 5-228 (233)
79 PRK15079 oligopeptide ABC tran 99.9 1.3E-23 2.8E-28 193.3 12.8 172 69-240 34-251 (331)
80 PRK11000 maltose/maltodextrin 99.9 6.9E-24 1.5E-28 197.8 11.1 179 58-240 7-223 (369)
81 KOG0056 Heavy metal exporter H 99.9 6.2E-24 1.3E-28 197.2 10.6 197 44-241 527-762 (790)
82 PLN03130 ABC transporter C fam 99.9 6.6E-24 1.4E-28 227.8 12.3 187 52-240 1235-1461(1622)
83 PRK13641 cbiO cobalt transport 99.9 1.4E-23 3E-28 189.7 12.6 183 58-240 6-234 (287)
84 cd03259 ABC_Carb_Solutes_like 99.9 1.1E-23 2.4E-28 182.0 11.4 162 69-232 13-212 (213)
85 cd03219 ABC_Mj1267_LivG_branch 99.9 8.5E-24 1.8E-28 185.4 10.7 169 70-238 14-230 (236)
86 PRK10575 iron-hydroxamate tran 99.9 2.4E-23 5.2E-28 186.0 13.7 187 54-242 11-239 (265)
87 PRK10253 iron-enterobactin tra 99.9 2.3E-23 5E-28 186.1 13.6 190 57-248 10-241 (265)
88 PRK11022 dppD dipeptide transp 99.9 1.7E-23 3.6E-28 192.3 12.7 171 70-240 21-243 (326)
89 PRK10790 putative multidrug tr 99.9 9.2E-24 2E-28 208.4 11.7 181 53-239 339-562 (592)
90 PRK13633 cobalt transporter AT 99.9 2.9E-23 6.4E-28 186.9 13.7 186 55-240 5-233 (280)
91 COG1117 PstB ABC-type phosphat 99.9 6.2E-24 1.3E-28 179.3 8.6 174 68-241 19-238 (253)
92 TIGR01846 type_I_sec_HlyB type 99.9 2.4E-23 5.2E-28 208.9 14.3 188 52-240 453-680 (694)
93 cd03289 ABCC_CFTR2 The CFTR su 99.9 5E-24 1.1E-28 191.3 8.3 184 54-240 2-225 (275)
94 cd03265 ABC_DrrA DrrA is the A 99.9 3E-23 6.5E-28 180.2 12.9 165 70-235 14-216 (220)
95 PRK11607 potG putrescine trans 99.9 2.1E-23 4.5E-28 194.9 12.6 182 55-240 20-239 (377)
96 PRK11308 dppF dipeptide transp 99.9 3.9E-23 8.6E-28 189.8 14.0 172 69-240 28-244 (327)
97 cd03224 ABC_TM1139_LivF_branch 99.9 1.8E-23 3.9E-28 181.7 11.2 167 70-237 14-218 (222)
98 TIGR02203 MsbA_lipidA lipid A 99.9 2.2E-23 4.7E-28 204.8 13.1 188 52-239 328-555 (571)
99 cd03296 ABC_CysA_sulfate_impor 99.9 1.6E-23 3.5E-28 184.2 10.9 177 58-238 6-224 (239)
100 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.1E-23 4.7E-28 180.8 11.5 139 69-207 17-173 (218)
101 TIGR03873 F420-0_ABC_ATP propo 99.9 4.6E-23 1E-27 183.2 13.9 182 69-250 14-236 (256)
102 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3.2E-23 6.9E-28 182.7 12.7 178 60-238 6-223 (242)
103 TIGR00957 MRP_assoc_pro multi 99.9 6.7E-24 1.5E-28 227.4 10.0 186 52-240 1282-1508(1522)
104 COG3840 ThiQ ABC-type thiamine 99.9 2.3E-23 5E-28 171.8 10.9 160 79-240 23-219 (231)
105 PTZ00265 multidrug resistance 99.9 1.9E-23 4.2E-28 222.4 13.2 189 51-240 1162-1452(1466)
106 PRK13638 cbiO cobalt transport 99.9 5.1E-23 1.1E-27 184.4 13.8 181 58-240 5-225 (271)
107 cd03218 ABC_YhbG The ABC trans 99.9 1.9E-23 4.2E-28 182.7 10.8 170 70-239 14-221 (232)
108 PRK10070 glycine betaine trans 99.9 3.2E-23 7E-28 194.5 12.9 171 70-240 42-254 (400)
109 PLN03232 ABC transporter C fam 99.9 1.3E-23 2.8E-28 224.9 11.5 184 52-240 1232-1458(1495)
110 PRK13645 cbiO cobalt transport 99.9 3.6E-23 7.8E-28 187.1 12.5 189 52-240 4-240 (289)
111 PRK03695 vitamin B12-transport 99.9 7.2E-23 1.6E-27 181.2 14.2 171 71-241 11-223 (248)
112 PRK13657 cyclic beta-1,2-gluca 99.9 4.3E-23 9.2E-28 203.5 14.1 185 53-239 333-557 (588)
113 PRK11231 fecE iron-dicitrate t 99.9 4.1E-23 8.9E-28 183.4 12.4 190 58-249 6-236 (255)
114 TIGR03522 GldA_ABC_ATP gliding 99.9 2.8E-23 6E-28 188.9 11.5 170 69-239 15-220 (301)
115 cd03225 ABC_cobalt_CbiO_domain 99.9 3.4E-23 7.3E-28 178.7 11.4 139 69-207 14-167 (211)
116 PRK13642 cbiO cobalt transport 99.9 5.1E-23 1.1E-27 185.1 12.9 186 55-240 5-229 (277)
117 PRK13639 cbiO cobalt transport 99.9 2.8E-23 6.2E-28 186.5 11.3 181 59-240 6-226 (275)
118 cd03294 ABC_Pro_Gly_Bertaine T 99.9 6.1E-23 1.3E-27 183.8 13.2 170 70-239 38-249 (269)
119 cd03266 ABC_NatA_sodium_export 99.9 2.9E-23 6.3E-28 179.9 10.5 172 59-231 6-216 (218)
120 PTZ00243 ABC transporter; Prov 99.9 9.2E-24 2E-28 226.3 8.9 184 52-240 1306-1533(1560)
121 PRK13547 hmuV hemin importer A 99.9 2.1E-22 4.6E-27 180.6 16.3 183 70-252 15-256 (272)
122 PRK11831 putative ABC transpor 99.9 3.6E-23 7.9E-28 185.2 11.3 184 55-240 8-233 (269)
123 cd03226 ABC_cobalt_CbiO_domain 99.9 2.9E-23 6.3E-28 178.4 10.3 155 69-229 13-204 (205)
124 TIGR03415 ABC_choXWV_ATP choli 99.9 4.8E-23 1E-27 192.2 12.4 172 69-240 37-254 (382)
125 PRK11614 livF leucine/isoleuci 99.9 6.8E-23 1.5E-27 180.0 12.2 183 55-240 6-226 (237)
126 cd03260 ABC_PstB_phosphate_tra 99.9 2.9E-23 6.4E-28 181.1 9.6 166 70-235 14-224 (227)
127 PRK10895 lipopolysaccharide AB 99.9 7.2E-23 1.6E-27 180.2 11.9 182 57-240 6-226 (241)
128 PRK13649 cbiO cobalt transport 99.9 9.5E-23 2.1E-27 183.5 12.8 183 58-240 6-234 (280)
129 cd03301 ABC_MalK_N The N-termi 99.9 5.4E-23 1.2E-27 177.6 10.7 161 70-232 14-212 (213)
130 PRK14250 phosphate ABC transpo 99.9 7.9E-23 1.7E-27 180.1 11.9 177 58-239 7-220 (241)
131 cd03252 ABCC_Hemolysin The ABC 99.9 6.6E-23 1.4E-27 180.0 11.3 179 60-240 6-225 (237)
132 PRK09473 oppD oligopeptide tra 99.9 1.1E-22 2.3E-27 187.2 13.2 186 55-240 13-251 (330)
133 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1E-22 2.2E-27 178.9 12.4 169 70-239 15-220 (236)
134 PRK11629 lolD lipoprotein tran 99.9 8.3E-23 1.8E-27 179.1 11.8 153 55-207 6-178 (233)
135 PRK11264 putative amino-acid A 99.9 1.1E-22 2.3E-27 180.1 12.5 181 57-239 6-232 (250)
136 TIGR02211 LolD_lipo_ex lipopro 99.9 1.2E-22 2.5E-27 176.5 12.6 149 59-207 6-174 (221)
137 PRK15112 antimicrobial peptide 99.9 1.6E-22 3.5E-27 180.9 13.5 171 69-239 26-238 (267)
138 cd03264 ABC_drug_resistance_li 99.9 2.9E-23 6.3E-28 179.2 8.3 161 70-232 14-210 (211)
139 cd03257 ABC_NikE_OppD_transpor 99.9 1.2E-22 2.5E-27 177.2 12.2 174 58-231 5-226 (228)
140 PRK09493 glnQ glutamine ABC tr 99.9 6.5E-23 1.4E-27 180.4 10.6 170 70-239 15-224 (240)
141 PRK11701 phnK phosphonate C-P 99.9 1.6E-22 3.4E-27 179.9 13.0 183 55-239 7-240 (258)
142 TIGR03411 urea_trans_UrtD urea 99.9 1.6E-22 3.4E-27 178.1 12.4 180 58-239 6-230 (242)
143 PRK10789 putative multidrug tr 99.9 1E-22 2.2E-27 200.1 12.3 188 52-240 311-538 (569)
144 PRK14247 phosphate ABC transpo 99.9 1.1E-22 2.4E-27 180.0 11.3 180 58-239 7-233 (250)
145 PRK15093 antimicrobial peptide 99.9 9.7E-23 2.1E-27 187.6 11.4 172 69-240 20-248 (330)
146 PRK10908 cell division protein 99.9 1.4E-22 2.9E-27 176.4 11.7 172 59-231 6-217 (222)
147 TIGR01842 type_I_sec_PrtD type 99.9 1.2E-22 2.6E-27 198.6 12.6 185 53-239 315-541 (544)
148 TIGR02769 nickel_nikE nickel i 99.9 1.3E-22 2.8E-27 181.3 11.7 171 69-239 24-239 (265)
149 TIGR02673 FtsE cell division A 99.9 2.2E-22 4.8E-27 173.9 12.8 139 69-207 15-170 (214)
150 TIGR02868 CydC thiol reductant 99.9 6.6E-23 1.4E-27 199.8 10.4 154 52-208 332-504 (529)
151 PRK10584 putative ABC transpor 99.9 2.2E-22 4.7E-27 175.7 12.6 177 55-231 7-226 (228)
152 PRK11300 livG leucine/isoleuci 99.9 2E-22 4.4E-27 178.7 12.5 184 55-240 6-243 (255)
153 cd03292 ABC_FtsE_transporter F 99.9 1.4E-22 3E-27 175.1 11.1 139 69-207 14-169 (214)
154 TIGR02204 MsbA_rel ABC transpo 99.9 1.2E-22 2.5E-27 199.8 12.0 183 53-239 336-562 (576)
155 cd03268 ABC_BcrA_bacitracin_re 99.9 4.8E-23 1.1E-27 177.4 7.9 159 69-232 13-207 (208)
156 TIGR00972 3a0107s01c2 phosphat 99.9 1.2E-22 2.7E-27 179.4 10.7 170 70-239 15-231 (247)
157 cd03262 ABC_HisP_GlnQ_permease 99.9 2.1E-22 4.5E-27 173.9 11.8 138 70-207 14-168 (213)
158 TIGR03410 urea_trans_UrtE urea 99.9 2.1E-22 4.5E-27 176.0 11.9 167 70-238 14-219 (230)
159 PRK14257 phosphate ABC transpo 99.9 1.4E-22 3.1E-27 186.3 10.9 188 53-240 79-313 (329)
160 PRK14273 phosphate ABC transpo 99.9 2.1E-22 4.6E-27 178.7 11.6 183 55-239 8-237 (254)
161 TIGR03005 ectoine_ehuA ectoine 99.9 2.4E-22 5.3E-27 178.1 12.0 179 59-239 5-235 (252)
162 COG0444 DppD ABC-type dipeptid 99.9 2.5E-22 5.4E-27 179.6 12.0 172 69-240 18-243 (316)
163 cd03251 ABCC_MsbA MsbA is an e 99.9 2.4E-22 5.2E-27 176.0 11.7 169 69-239 15-224 (234)
164 TIGR02142 modC_ABC molybdenum 99.9 2.5E-22 5.5E-27 186.5 12.5 166 74-240 15-221 (354)
165 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.3E-22 2.9E-27 176.2 9.6 160 69-233 17-216 (220)
166 PRK11144 modC molybdate transp 99.9 3.9E-22 8.4E-27 185.1 13.2 163 74-241 16-219 (352)
167 COG1123 ATPase components of v 99.9 3.9E-22 8.5E-27 190.1 13.4 172 69-240 304-519 (539)
168 PRK14267 phosphate ABC transpo 99.9 2.1E-22 4.5E-27 178.6 10.8 181 57-239 7-236 (253)
169 PRK11124 artP arginine transpo 99.9 3.3E-22 7.1E-27 176.1 12.0 179 57-237 5-227 (242)
170 PRK10771 thiQ thiamine transpo 99.9 4.6E-22 1E-26 174.2 12.8 165 74-240 17-219 (232)
171 PRK09700 D-allose transporter 99.9 4.4E-22 9.6E-27 193.2 14.0 185 55-241 6-235 (510)
172 PRK10938 putative molybdenum t 99.9 2.8E-22 6.2E-27 193.7 12.6 182 57-240 6-224 (490)
173 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 4E-22 8.6E-27 175.1 12.4 169 69-239 16-225 (238)
174 cd03254 ABCC_Glucan_exporter_l 99.9 4.1E-22 8.8E-27 174.0 12.3 179 57-238 5-224 (229)
175 COG5265 ATM1 ABC-type transpor 99.9 2.5E-22 5.4E-27 183.9 11.0 191 50-241 258-487 (497)
176 PRK13549 xylose transporter AT 99.9 2.7E-22 5.9E-27 194.5 11.7 183 55-239 6-231 (506)
177 PRK14269 phosphate ABC transpo 99.9 3.7E-22 8.1E-27 176.3 11.6 180 58-239 6-229 (246)
178 PRK10762 D-ribose transporter 99.9 3.7E-22 8E-27 193.4 12.4 182 55-238 5-228 (501)
179 cd03214 ABC_Iron-Siderophores_ 99.9 2.3E-22 4.9E-27 169.6 9.6 138 69-231 12-178 (180)
180 cd03269 ABC_putative_ATPase Th 99.9 1.2E-22 2.6E-27 175.2 8.0 158 70-231 14-208 (210)
181 PRK14242 phosphate transporter 99.9 3E-22 6.5E-27 177.5 10.8 185 53-239 5-236 (253)
182 COG1123 ATPase components of v 99.9 6.8E-22 1.5E-26 188.5 13.5 173 69-241 22-245 (539)
183 COG4172 ABC-type uncharacteriz 99.9 4.9E-22 1.1E-26 181.2 11.9 171 70-240 301-516 (534)
184 cd03298 ABC_ThiQ_thiamine_tran 99.9 9.1E-22 2E-26 169.8 13.1 156 74-231 16-209 (211)
185 TIGR01192 chvA glucan exporter 99.9 6.1E-22 1.3E-26 195.2 13.7 187 52-240 332-558 (585)
186 cd03244 ABCC_MRP_domain2 Domai 99.9 1.2E-22 2.6E-27 176.5 7.4 175 56-233 4-219 (221)
187 cd03245 ABCC_bacteriocin_expor 99.9 4E-22 8.7E-27 173.0 10.8 169 58-231 6-218 (220)
188 TIGR02857 CydD thiol reductant 99.9 2.9E-22 6.2E-27 195.3 11.0 155 53-208 319-492 (529)
189 cd03235 ABC_Metallic_Cations A 99.9 4E-22 8.7E-27 172.3 10.6 133 70-207 13-165 (213)
190 TIGR02770 nickel_nikD nickel i 99.9 7.9E-22 1.7E-26 172.6 12.5 166 72-239 2-214 (230)
191 PRK10744 pstB phosphate transp 99.9 4.6E-22 1E-26 177.2 11.1 185 53-239 12-243 (260)
192 TIGR01271 CFTR_protein cystic 99.9 1.1E-22 2.4E-27 217.5 8.5 186 52-240 1215-1440(1490)
193 PRK14268 phosphate ABC transpo 99.9 4.8E-22 1E-26 176.9 11.1 184 54-239 12-241 (258)
194 COG4148 ModC ABC-type molybdat 99.9 1.4E-22 2.9E-27 177.2 7.3 163 73-241 15-219 (352)
195 PRK10261 glutathione transport 99.9 5.1E-22 1.1E-26 196.9 12.5 171 70-240 338-553 (623)
196 PRK14243 phosphate transporter 99.9 6.7E-22 1.4E-26 176.6 12.0 190 48-239 4-247 (264)
197 PRK10463 hydrogenase nickel in 99.9 2.5E-22 5.5E-27 179.5 9.2 191 71-272 93-286 (290)
198 PRK10619 histidine/lysine/argi 99.9 7.1E-22 1.5E-26 175.7 12.0 183 55-239 6-240 (257)
199 TIGR01277 thiQ thiamine ABC tr 99.9 8.1E-22 1.8E-26 170.5 12.0 161 72-234 14-212 (213)
200 PRK15439 autoinducer 2 ABC tra 99.9 7.8E-22 1.7E-26 191.5 13.1 182 55-241 12-230 (510)
201 cd03288 ABCC_SUR2 The SUR doma 99.9 1.5E-21 3.2E-26 173.6 13.8 189 51-239 16-242 (257)
202 PRK14237 phosphate transporter 99.9 9E-22 2E-26 176.0 12.4 197 42-240 8-251 (267)
203 TIGR02323 CP_lyasePhnK phospho 99.9 8.4E-22 1.8E-26 174.7 12.0 181 56-238 5-236 (253)
204 PRK14274 phosphate ABC transpo 99.9 5.7E-22 1.2E-26 176.5 11.0 185 54-240 12-243 (259)
205 PRK09984 phosphonate/organopho 99.9 1.3E-21 2.9E-26 174.3 13.3 181 55-237 5-239 (262)
206 TIGR01184 ntrCD nitrate transp 99.9 1.1E-21 2.4E-26 171.8 12.4 158 73-235 2-199 (230)
207 TIGR01166 cbiO cobalt transpor 99.9 8.9E-22 1.9E-26 167.2 11.4 140 69-208 5-161 (190)
208 PRK11247 ssuB aliphatic sulfon 99.9 8.6E-22 1.9E-26 175.3 11.4 170 53-234 11-217 (257)
209 PRK10522 multidrug transporter 99.9 7.4E-22 1.6E-26 193.2 12.1 177 53-232 321-530 (547)
210 PRK14235 phosphate transporter 99.9 6.1E-22 1.3E-26 177.2 10.5 184 54-239 19-250 (267)
211 PRK14248 phosphate ABC transpo 99.9 6E-22 1.3E-26 177.2 10.4 184 54-239 21-251 (268)
212 PRK14259 phosphate ABC transpo 99.9 8.6E-22 1.9E-26 176.4 11.4 185 54-240 13-253 (269)
213 PRK10419 nikE nickel transport 99.9 1.7E-21 3.8E-26 174.3 13.4 171 69-239 25-240 (268)
214 PRK10247 putative ABC transpor 99.9 1.4E-21 3.1E-26 170.5 12.4 151 54-207 7-170 (225)
215 cd03248 ABCC_TAP TAP, the Tran 99.9 1.7E-21 3.7E-26 169.8 12.7 157 50-207 7-183 (226)
216 TIGR01978 sufC FeS assembly AT 99.9 1.1E-21 2.3E-26 172.8 11.5 167 70-236 14-230 (243)
217 PRK14256 phosphate ABC transpo 99.9 1.2E-21 2.7E-26 173.6 11.0 184 54-239 4-235 (252)
218 COG4598 HisP ABC-type histidin 99.9 2.4E-21 5.2E-26 159.8 11.8 171 70-240 20-241 (256)
219 cd03300 ABC_PotA_N PotA is an 99.9 2E-21 4.2E-26 170.3 11.9 168 70-239 14-219 (232)
220 PRK10982 galactose/methyl gala 99.9 2.2E-21 4.8E-26 187.5 13.4 170 69-238 11-221 (491)
221 PRK13549 xylose transporter AT 99.9 3E-21 6.5E-26 187.3 14.3 185 54-238 259-492 (506)
222 PRK15134 microcin C ABC transp 99.9 1.6E-21 3.4E-26 190.2 12.4 186 54-239 275-514 (529)
223 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.3E-21 4.9E-26 166.9 11.8 171 54-234 6-206 (207)
224 PRK10418 nikD nickel transport 99.9 1.5E-21 3.2E-26 173.3 10.9 177 56-239 6-229 (254)
225 cd03297 ABC_ModC_molybdenum_tr 99.9 3E-21 6.5E-26 167.0 12.5 157 74-232 16-213 (214)
226 TIGR02982 heterocyst_DevA ABC 99.9 2E-21 4.3E-26 168.9 11.4 139 69-207 18-174 (220)
227 cd03234 ABCG_White The White s 99.9 2.5E-21 5.4E-26 168.9 12.0 173 57-232 6-225 (226)
228 cd03253 ABCC_ATM1_transporter 99.9 2.4E-21 5.2E-26 169.9 11.8 168 69-238 14-222 (236)
229 PRK14241 phosphate transporter 99.9 1.3E-21 2.9E-26 173.9 10.3 183 56-240 6-242 (258)
230 TIGR01194 cyc_pep_trnsptr cycl 99.9 2.1E-21 4.6E-26 190.3 12.7 179 52-231 335-550 (555)
231 PRK15134 microcin C ABC transp 99.9 2.3E-21 4.9E-26 189.1 12.7 185 55-239 6-245 (529)
232 cd03299 ABC_ModC_like Archeal 99.9 2.2E-21 4.7E-26 170.4 11.3 166 71-238 14-217 (235)
233 PRK14270 phosphate ABC transpo 99.9 2E-21 4.4E-26 172.1 11.2 184 55-240 5-235 (251)
234 PRK15056 manganese/iron transp 99.9 1.4E-21 2.9E-26 175.4 10.2 180 56-240 8-230 (272)
235 cd03233 ABC_PDR_domain1 The pl 99.9 2.2E-21 4.7E-26 166.7 11.0 162 55-231 4-200 (202)
236 cd03267 ABC_NatA_like Similar 99.9 2.8E-21 6.1E-26 169.8 11.9 163 69-232 34-235 (236)
237 COG1119 ModF ABC-type molybden 99.9 5.8E-21 1.3E-25 164.7 13.4 177 55-233 32-255 (257)
238 PRK10261 glutathione transport 99.9 2.2E-21 4.8E-26 192.4 12.5 186 54-239 12-257 (623)
239 PRK14240 phosphate transporter 99.9 2.2E-21 4.7E-26 171.7 10.9 183 55-239 4-233 (250)
240 PRK14254 phosphate ABC transpo 99.9 2E-21 4.3E-26 175.4 10.8 184 54-239 39-268 (285)
241 cd03246 ABCC_Protease_Secretio 99.9 2.1E-21 4.7E-26 162.7 10.2 120 60-207 6-129 (173)
242 PRK11248 tauB taurine transpor 99.9 2.1E-21 4.4E-26 172.7 10.5 160 69-233 14-213 (255)
243 PRK09700 D-allose transporter 99.9 3.8E-21 8.2E-26 186.7 13.2 177 55-235 266-493 (510)
244 TIGR03269 met_CoM_red_A2 methy 99.9 3.2E-21 7E-26 187.6 12.7 185 54-239 279-516 (520)
245 TIGR00968 3a0106s01 sulfate AB 99.9 3.7E-21 8.1E-26 169.1 11.9 168 70-239 14-219 (237)
246 cd03247 ABCC_cytochrome_bd The 99.9 1.2E-21 2.5E-26 165.0 8.2 145 60-231 6-176 (178)
247 COG4152 ABC-type uncharacteriz 99.9 2E-21 4.4E-26 167.0 9.4 167 70-240 16-219 (300)
248 PRK14265 phosphate ABC transpo 99.9 4.8E-21 1E-25 172.0 12.3 185 54-240 20-258 (274)
249 PRK14272 phosphate ABC transpo 99.9 2.7E-21 5.9E-26 171.2 10.5 180 58-239 8-235 (252)
250 PRK14245 phosphate ABC transpo 99.9 2.6E-21 5.6E-26 171.3 10.3 181 58-240 7-234 (250)
251 PRK14253 phosphate ABC transpo 99.9 4.2E-21 9.2E-26 169.8 11.6 180 57-238 6-231 (249)
252 COG4586 ABC-type uncharacteriz 99.9 3.2E-21 6.8E-26 168.2 10.5 171 69-240 37-246 (325)
253 TIGR02633 xylG D-xylose ABC tr 99.8 6.5E-21 1.4E-25 184.7 13.3 169 69-237 14-227 (500)
254 PRK14271 phosphate ABC transpo 99.8 4.3E-21 9.4E-26 172.5 11.3 185 54-240 21-251 (276)
255 PRK14244 phosphate ABC transpo 99.8 2.5E-21 5.5E-26 171.5 9.4 171 69-239 18-236 (251)
256 PRK14258 phosphate ABC transpo 99.8 7.1E-21 1.5E-25 169.7 12.3 186 53-240 6-245 (261)
257 PRK14261 phosphate ABC transpo 99.8 3.9E-21 8.5E-26 170.4 10.5 183 55-239 7-236 (253)
258 PRK14262 phosphate ABC transpo 99.8 3.9E-21 8.4E-26 170.1 10.2 182 56-239 5-233 (250)
259 PRK14263 phosphate ABC transpo 99.8 9.6E-21 2.1E-25 168.9 12.8 172 69-240 21-245 (261)
260 PRK14251 phosphate ABC transpo 99.8 5.4E-21 1.2E-25 169.3 11.1 183 55-239 5-234 (251)
261 PRK14238 phosphate transporter 99.8 4.6E-21 1E-25 171.8 10.8 184 54-239 24-254 (271)
262 PRK11288 araG L-arabinose tran 99.8 8.2E-21 1.8E-25 184.0 13.0 178 55-234 5-223 (501)
263 PRK11288 araG L-arabinose tran 99.8 1.2E-20 2.7E-25 182.8 14.1 174 70-243 267-488 (501)
264 COG4167 SapF ABC-type antimicr 99.8 8.3E-21 1.8E-25 157.0 10.8 171 70-240 27-239 (267)
265 TIGR03740 galliderm_ABC gallid 99.8 3.5E-21 7.5E-26 167.6 9.1 161 69-236 13-209 (223)
266 PRK14275 phosphate ABC transpo 99.8 3.8E-21 8.3E-26 173.7 9.7 184 54-239 39-269 (286)
267 TIGR03608 L_ocin_972_ABC putat 99.8 4.7E-21 1E-25 164.6 9.7 139 70-208 12-168 (206)
268 TIGR03771 anch_rpt_ABC anchore 99.8 1.7E-20 3.8E-25 163.4 13.4 157 79-241 4-202 (223)
269 PRK10762 D-ribose transporter 99.8 8.6E-21 1.9E-25 183.9 12.7 168 71-238 267-482 (501)
270 KOG0054 Multidrug resistance-a 99.8 6.2E-21 1.3E-25 197.8 11.9 190 52-241 1136-1363(1381)
271 PRK15439 autoinducer 2 ABC tra 99.8 2E-20 4.3E-25 181.7 14.7 169 71-239 278-491 (510)
272 PRK14239 phosphate transporter 99.8 8.9E-21 1.9E-25 167.9 11.2 184 55-240 6-236 (252)
273 PRK14249 phosphate ABC transpo 99.8 7.9E-21 1.7E-25 168.3 10.9 182 56-239 6-234 (251)
274 TIGR03269 met_CoM_red_A2 methy 99.8 6.9E-21 1.5E-25 185.3 11.2 173 69-241 13-259 (520)
275 TIGR01257 rim_protein retinal- 99.8 1.7E-20 3.8E-25 202.0 15.3 183 55-238 929-1147(2272)
276 TIGR01257 rim_protein retinal- 99.8 6.7E-21 1.5E-25 205.1 12.0 183 55-238 1938-2157(2272)
277 PRK14260 phosphate ABC transpo 99.8 7.3E-21 1.6E-25 169.4 10.3 185 54-240 7-243 (259)
278 TIGR01187 potA spermidine/putr 99.8 1.1E-20 2.4E-25 173.5 11.8 153 86-240 1-190 (325)
279 PRK14246 phosphate ABC transpo 99.8 1.2E-20 2.7E-25 167.8 11.7 185 54-240 10-241 (257)
280 COG4181 Predicted ABC-type tra 99.8 1.4E-20 3.1E-25 154.0 10.8 162 70-231 24-226 (228)
281 TIGR02633 xylG D-xylose ABC tr 99.8 1.6E-20 3.4E-25 182.0 13.1 180 55-234 258-486 (500)
282 PRK14236 phosphate transporter 99.8 1.3E-20 2.7E-25 169.1 11.3 184 54-239 25-255 (272)
283 PRK14255 phosphate ABC transpo 99.8 8.9E-21 1.9E-25 168.0 9.8 184 55-240 6-236 (252)
284 COG1129 MglA ABC-type sugar tr 99.8 2.2E-20 4.8E-25 177.0 12.8 165 70-234 22-228 (500)
285 PTZ00265 multidrug resistance 99.8 1.4E-20 3.1E-25 200.6 12.9 174 54-227 382-655 (1466)
286 COG4608 AppF ABC-type oligopep 99.8 1.2E-20 2.6E-25 165.5 10.1 143 70-240 27-199 (268)
287 PRK09544 znuC high-affinity zi 99.8 5.7E-21 1.2E-25 169.5 8.1 168 56-240 6-209 (251)
288 PRK09580 sufC cysteine desulfu 99.8 3.2E-20 7E-25 163.9 12.8 176 59-236 6-231 (248)
289 PRK14252 phosphate ABC transpo 99.8 2E-20 4.4E-25 167.0 11.2 185 53-239 15-248 (265)
290 cd03215 ABC_Carb_Monos_II This 99.8 2.5E-20 5.3E-25 157.5 10.4 118 71-207 15-137 (182)
291 cd03230 ABC_DR_subfamily_A Thi 99.8 2E-20 4.4E-25 156.7 9.8 111 70-207 14-128 (173)
292 cd03217 ABC_FeS_Assembly ABC-t 99.8 2.3E-20 5.1E-25 160.0 10.3 146 70-238 14-191 (200)
293 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 2E-20 4.4E-25 163.1 10.0 159 69-232 35-223 (224)
294 cd03216 ABC_Carb_Monos_I This 99.8 9.1E-21 2E-25 157.5 7.4 130 59-231 5-162 (163)
295 PRK14266 phosphate ABC transpo 99.8 2.8E-20 6.1E-25 164.6 10.9 171 69-239 16-233 (250)
296 cd03231 ABC_CcmA_heme_exporter 99.8 4.3E-20 9.4E-25 158.4 11.5 133 70-208 14-159 (201)
297 PRK13540 cytochrome c biogenes 99.8 3.3E-20 7.2E-25 158.9 10.8 134 70-208 15-161 (200)
298 PRK10982 galactose/methyl gala 99.8 7.3E-20 1.6E-24 177.0 14.4 177 55-235 251-475 (491)
299 CHL00131 ycf16 sulfate ABC tra 99.8 6.5E-20 1.4E-24 162.4 12.8 180 55-236 8-237 (252)
300 PF00005 ABC_tran: ABC transpo 99.8 6.3E-21 1.4E-25 153.2 5.7 126 72-203 1-137 (137)
301 COG4619 ABC-type uncharacteriz 99.8 1.6E-20 3.6E-25 153.2 8.0 146 63-208 10-167 (223)
302 cd03228 ABCC_MRP_Like The MRP 99.8 3.2E-20 7E-25 155.2 9.9 111 70-208 16-130 (171)
303 TIGR01189 ccmA heme ABC export 99.8 1.3E-20 2.8E-25 161.2 7.3 135 70-208 14-161 (198)
304 cd03229 ABC_Class3 This class 99.8 9.8E-21 2.1E-25 159.4 6.3 115 69-207 13-133 (178)
305 PRK14264 phosphate ABC transpo 99.8 4.1E-20 8.8E-25 168.4 10.8 183 55-239 46-288 (305)
306 TIGR00955 3a01204 The Eye Pigm 99.8 7.9E-20 1.7E-24 181.2 13.5 170 68-240 37-256 (617)
307 PRK13538 cytochrome c biogenes 99.8 4.3E-20 9.3E-25 158.7 10.0 136 70-208 15-163 (204)
308 cd03213 ABCG_EPDR ABCG transpo 99.8 4.5E-20 9.7E-25 157.5 9.9 154 56-231 5-192 (194)
309 PLN03211 ABC transporter G-25; 99.8 6.1E-20 1.3E-24 182.7 11.3 168 69-240 81-296 (659)
310 COG4161 ArtP ABC-type arginine 99.8 2.5E-19 5.5E-24 145.5 12.6 168 68-235 14-225 (242)
311 COG3845 ABC-type uncharacteriz 99.8 1.5E-19 3.3E-24 168.8 12.8 164 68-231 16-220 (501)
312 PRK10938 putative molybdenum t 99.8 1.7E-19 3.7E-24 174.3 13.4 176 54-231 260-483 (490)
313 TIGR02324 CP_lyasePhnL phospho 99.8 1E-19 2.2E-24 158.4 10.2 139 70-208 22-183 (224)
314 COG4525 TauB ABC-type taurine 99.8 1.2E-19 2.6E-24 151.6 9.7 137 64-205 13-163 (259)
315 cd03232 ABC_PDR_domain2 The pl 99.8 1.2E-19 2.7E-24 154.5 9.9 152 57-231 6-190 (192)
316 PRK13539 cytochrome c biogenes 99.8 1.3E-19 2.7E-24 156.2 9.7 143 58-208 6-161 (207)
317 cd03237 ABC_RNaseL_inhibitor_d 99.8 1.5E-19 3.2E-24 160.0 10.1 113 80-207 24-148 (246)
318 COG1101 PhnK ABC-type uncharac 99.8 1.7E-19 3.8E-24 152.6 9.9 162 67-232 17-230 (263)
319 PRK13546 teichoic acids export 99.8 3.2E-19 7E-24 159.3 12.3 168 67-240 35-232 (264)
320 PRK10535 macrolide transporter 99.8 1.2E-19 2.5E-24 180.9 10.5 185 55-239 5-231 (648)
321 cd03236 ABC_RNaseL_inhibitor_d 99.8 2E-19 4.4E-24 159.8 10.6 145 60-207 6-172 (255)
322 PRK13543 cytochrome c biogenes 99.8 2.9E-19 6.2E-24 154.8 9.8 147 55-208 12-171 (214)
323 PRK15064 ABC transporter ATP-b 99.8 4.5E-19 9.7E-24 173.0 12.3 170 55-239 320-524 (530)
324 PRK15064 ABC transporter ATP-b 99.8 1.3E-19 2.9E-24 176.7 8.3 168 59-239 6-241 (530)
325 cd03223 ABCD_peroxisomal_ALDP 99.8 2.8E-19 6.1E-24 148.9 8.7 107 69-208 14-125 (166)
326 cd03250 ABCC_MRP_domain1 Domai 99.8 3.7E-19 7.9E-24 152.8 9.6 123 70-208 19-161 (204)
327 COG0396 sufC Cysteine desulfur 99.8 1.6E-18 3.5E-23 148.2 12.5 171 69-240 17-233 (251)
328 PRK13545 tagH teichoic acids e 99.8 7.9E-19 1.7E-23 168.1 11.8 176 59-240 26-232 (549)
329 cd03291 ABCC_CFTR1 The CFTR su 99.8 9.8E-19 2.1E-23 157.6 11.3 176 45-240 30-247 (282)
330 PRK11819 putative ABC transpor 99.8 4E-19 8.7E-24 174.3 9.0 170 55-237 7-247 (556)
331 cd03290 ABCC_SUR1_N The SUR do 99.8 9.4E-19 2E-23 151.8 10.0 140 62-208 8-174 (218)
332 COG1134 TagH ABC-type polysacc 99.8 2.2E-18 4.7E-23 148.8 12.1 171 69-245 40-241 (249)
333 COG4172 ABC-type uncharacteriz 99.8 1E-18 2.2E-23 159.7 10.1 179 62-240 16-247 (534)
334 PRK13541 cytochrome c biogenes 99.8 2.6E-19 5.6E-24 152.8 5.8 127 74-208 18-157 (195)
335 COG4674 Uncharacterized ABC-ty 99.8 4.6E-19 9.9E-24 148.0 6.7 169 71-239 20-234 (249)
336 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 3.3E-18 7.3E-23 167.6 13.6 170 56-238 6-246 (552)
337 PLN03232 ABC transporter C fam 99.8 6.7E-19 1.5E-23 188.9 9.2 174 53-240 613-828 (1495)
338 PRK10636 putative ABC transpor 99.8 9.8E-19 2.1E-23 173.9 9.4 168 55-238 313-515 (638)
339 TIGR00956 3a01205 Pleiotropic 99.8 1.5E-18 3.3E-23 184.8 11.0 164 68-235 775-988 (1394)
340 COG4138 BtuD ABC-type cobalami 99.8 1.2E-19 2.6E-24 149.1 1.9 177 80-256 24-237 (248)
341 PRK15177 Vi polysaccharide exp 99.8 2.7E-18 6E-23 148.6 10.2 159 71-238 2-190 (213)
342 PRK09435 membrane ATPase/prote 99.8 9E-18 1.9E-22 153.7 13.8 190 79-276 54-261 (332)
343 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 4.1E-18 8.9E-23 167.0 12.2 167 55-235 323-526 (552)
344 PRK10636 putative ABC transpor 99.8 1.4E-18 3.1E-23 172.7 8.7 167 69-235 14-231 (638)
345 TIGR00957 MRP_assoc_pro multi 99.8 2.2E-18 4.8E-23 185.2 10.5 171 54-240 636-850 (1522)
346 PLN03073 ABC transporter F fam 99.8 1.9E-18 4.2E-23 173.2 9.2 167 54-236 508-710 (718)
347 PLN03130 ABC transporter C fam 99.8 2.4E-18 5.1E-23 185.3 10.3 173 53-240 613-828 (1622)
348 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 2.3E-18 4.9E-23 140.3 7.8 86 70-207 14-103 (144)
349 PRK11819 putative ABC transpor 99.7 9.2E-18 2E-22 164.7 13.1 169 55-237 325-530 (556)
350 TIGR00956 3a01205 Pleiotropic 99.7 4.1E-18 8.9E-23 181.5 11.0 170 69-239 74-299 (1394)
351 PRK11147 ABC transporter ATPas 99.7 5.3E-18 1.2E-22 168.7 11.1 164 55-232 320-519 (635)
352 PRK13409 putative ATPase RIL; 99.7 7.2E-18 1.6E-22 166.0 11.3 142 72-231 355-533 (590)
353 cd03238 ABC_UvrA The excision 99.7 7.1E-18 1.5E-22 141.8 8.9 110 67-207 6-122 (176)
354 TIGR00954 3a01203 Peroxysomal 99.7 5.1E-18 1.1E-22 169.4 9.4 144 52-207 449-615 (659)
355 cd03222 ABC_RNaseL_inhibitor T 99.7 2.1E-17 4.5E-22 139.1 11.0 86 71-207 15-104 (177)
356 PLN03140 ABC transporter G fam 99.7 2.1E-17 4.5E-22 176.1 11.7 163 70-235 894-1105(1470)
357 KOG0059 Lipid exporter ABCA1 a 99.7 3.8E-17 8.1E-22 167.6 13.0 207 64-276 574-818 (885)
358 PRK13409 putative ATPase RIL; 99.7 8.9E-18 1.9E-22 165.3 7.2 153 70-226 88-286 (590)
359 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.8E-17 4E-22 136.5 7.7 98 70-208 13-114 (157)
360 COG4107 PhnK ABC-type phosphon 99.7 9.9E-17 2.1E-21 132.0 11.7 170 70-239 20-240 (258)
361 PRK11147 ABC transporter ATPas 99.7 2.3E-17 4.9E-22 164.2 8.7 175 58-236 7-239 (635)
362 KOG0061 Transporter, ABC super 99.7 3.5E-17 7.7E-22 161.6 9.9 174 69-247 43-266 (613)
363 PLN03140 ABC transporter G fam 99.7 3.5E-17 7.5E-22 174.5 10.3 168 69-239 178-426 (1470)
364 TIGR01271 CFTR_protein cystic 99.7 6.4E-17 1.4E-21 173.6 11.9 154 69-240 439-636 (1490)
365 PLN03073 ABC transporter F fam 99.7 1.6E-16 3.5E-21 159.4 12.9 179 55-235 178-426 (718)
366 PTZ00243 ABC transporter; Prov 99.7 6.8E-17 1.5E-21 173.7 10.7 157 68-240 672-870 (1560)
367 TIGR00073 hypB hydrogenase acc 99.7 3.1E-16 6.8E-21 135.1 11.5 182 81-273 22-205 (207)
368 COG0523 Putative GTPases (G3E 99.7 6.5E-17 1.4E-21 147.5 7.4 177 82-268 2-194 (323)
369 COG0488 Uup ATPase components 99.7 2.3E-16 5E-21 152.5 11.3 159 59-231 8-230 (530)
370 PF03308 ArgK: ArgK protein; 99.7 2.3E-16 5E-21 137.9 9.9 188 79-275 27-230 (266)
371 KOG0054 Multidrug resistance-a 99.7 2.3E-16 5.1E-21 164.1 11.6 171 55-240 519-731 (1381)
372 COG4133 CcmA ABC-type transpor 99.7 3.2E-16 7E-21 130.2 9.8 133 70-208 16-164 (209)
373 COG4778 PhnL ABC-type phosphon 99.7 3.9E-16 8.4E-21 128.0 8.5 138 69-206 24-184 (235)
374 COG1703 ArgK Putative periplas 99.6 3.3E-15 7.2E-20 132.4 13.7 192 79-277 49-256 (323)
375 COG4615 PvdE ABC-type sideroph 99.6 5.4E-16 1.2E-20 141.6 8.6 144 54-201 322-474 (546)
376 PF02492 cobW: CobW/HypB/UreG, 99.6 1.5E-16 3.2E-21 134.0 3.6 163 82-253 1-177 (178)
377 COG4136 ABC-type uncharacteriz 99.6 1.5E-15 3.4E-20 122.2 7.5 134 71-206 17-166 (213)
378 cd03270 ABC_UvrA_I The excisio 99.6 6.6E-16 1.4E-20 135.0 5.6 75 159-233 118-226 (226)
379 COG0488 Uup ATPase components 99.6 1.5E-15 3.3E-20 146.9 7.5 141 52-208 319-473 (530)
380 TIGR02475 CobW cobalamin biosy 99.6 3E-14 6.6E-19 131.5 12.1 181 80-268 3-223 (341)
381 KOG0927 Predicted transporter 99.5 8.1E-15 1.8E-19 138.3 7.5 142 52-208 387-543 (614)
382 PRK11537 putative GTP-binding 99.5 1.8E-14 3.8E-19 131.9 9.3 167 80-256 3-186 (318)
383 cd03278 ABC_SMC_barmotin Barmo 99.5 3.9E-15 8.5E-20 127.4 4.0 113 80-208 22-151 (197)
384 TIGR00750 lao LAO/AO transport 99.5 1.3E-13 2.8E-18 125.4 12.4 200 71-275 23-238 (300)
385 cd03279 ABC_sbcCD SbcCD and ot 99.5 3.7E-14 7.9E-19 122.8 5.0 132 73-207 18-166 (213)
386 cd03271 ABC_UvrA_II The excisi 99.5 2.1E-13 4.5E-18 121.4 9.8 77 158-234 149-260 (261)
387 KOG2743 Cobalamin synthesis pr 99.5 1.6E-13 3.5E-18 121.2 8.8 177 71-256 47-249 (391)
388 COG1129 MglA ABC-type sugar tr 99.4 7.8E-13 1.7E-17 125.9 12.7 162 71-232 274-482 (500)
389 cd03272 ABC_SMC3_euk Eukaryoti 99.4 2.6E-13 5.6E-18 119.4 7.6 35 174-208 155-196 (243)
390 COG1159 Era GTPase [General fu 99.4 9.8E-13 2.1E-17 116.8 9.6 162 81-276 6-173 (298)
391 PRK15494 era GTPase Era; Provi 99.4 1.7E-12 3.7E-17 120.0 11.3 194 45-275 9-216 (339)
392 COG1160 Predicted GTPases [Gen 99.4 1.5E-12 3.3E-17 121.5 10.4 170 80-278 177-354 (444)
393 KOG0066 eIF2-interacting prote 99.4 5.4E-13 1.2E-17 123.5 7.3 145 52-208 584-738 (807)
394 COG4178 ABC-type uncharacteriz 99.4 1.6E-12 3.4E-17 126.2 10.0 138 55-207 393-548 (604)
395 cd03112 CobW_like The function 99.4 8.9E-13 1.9E-17 109.0 6.3 141 82-228 1-158 (158)
396 KOG0065 Pleiotropic drug resis 99.4 1.5E-13 3.2E-18 141.1 1.4 168 68-238 803-1019(1391)
397 cd03273 ABC_SMC2_euk Eukaryoti 99.3 6.4E-13 1.4E-17 117.8 4.0 128 81-208 25-204 (251)
398 PRK00635 excinuclease ABC subu 99.3 1.2E-11 2.6E-16 132.5 11.8 80 160-239 791-905 (1809)
399 COG1160 Predicted GTPases [Gen 99.3 2.3E-11 5E-16 113.7 10.9 157 82-274 4-164 (444)
400 PRK15467 ethanolamine utilizat 99.3 1.4E-10 2.9E-15 95.8 14.4 84 192-278 65-150 (158)
401 COG1245 Predicted ATPase, RNas 99.3 4.3E-12 9.2E-17 118.1 5.9 109 79-207 365-488 (591)
402 PF10662 PduV-EutP: Ethanolami 99.3 7.6E-11 1.7E-15 95.1 11.9 79 191-271 63-142 (143)
403 TIGR00436 era GTP-binding prot 99.3 2.6E-11 5.7E-16 108.6 9.9 158 83-275 2-164 (270)
404 PRK00349 uvrA excinuclease ABC 99.2 8.5E-11 1.8E-15 120.7 12.2 78 162-239 814-926 (943)
405 KOG0927 Predicted transporter 99.2 8.5E-11 1.8E-15 111.4 10.6 162 70-232 89-300 (614)
406 COG0486 ThdF Predicted GTPase 99.2 9.4E-11 2E-15 109.9 10.6 161 79-277 215-378 (454)
407 COG3845 ABC-type uncharacteriz 99.2 1.3E-10 2.8E-15 109.3 11.0 168 69-236 271-488 (501)
408 cd03274 ABC_SMC4_euk Eukaryoti 99.2 2.3E-12 5E-17 111.6 -0.8 39 169-207 119-164 (212)
409 PRK00089 era GTPase Era; Revie 99.2 1.2E-10 2.7E-15 105.3 9.7 162 80-275 4-171 (292)
410 cd03240 ABC_Rad50 The catalyti 99.2 2.1E-11 4.6E-16 104.9 4.4 115 83-207 24-154 (204)
411 TIGR00630 uvra excinuclease AB 99.2 1.3E-10 2.8E-15 119.1 10.2 77 161-237 811-922 (924)
412 COG4170 SapD ABC-type antimicr 99.2 3.3E-11 7.2E-16 102.3 4.7 174 67-240 18-248 (330)
413 COG1245 Predicted ATPase, RNas 99.1 1.4E-10 3.1E-15 108.1 9.1 134 72-210 91-249 (591)
414 KOG0062 ATPase component of AB 99.1 6.2E-11 1.3E-15 111.8 6.6 132 68-208 92-232 (582)
415 PRK10416 signal recognition pa 99.1 4.7E-10 1E-14 102.8 12.2 169 79-269 112-304 (318)
416 cd00881 GTP_translation_factor 99.1 2.9E-10 6.3E-15 95.0 9.7 164 83-274 1-186 (189)
417 cd03275 ABC_SMC1_euk Eukaryoti 99.1 4.1E-11 9E-16 106.0 4.4 31 82-112 23-54 (247)
418 cd04163 Era Era subfamily. Er 99.1 4.9E-10 1.1E-14 90.9 10.2 81 192-273 83-167 (168)
419 cd00879 Sar1 Sar1 subfamily. 99.1 2.8E-10 6E-15 96.0 8.5 154 72-273 10-189 (190)
420 cd03276 ABC_SMC6_euk Eukaryoti 99.1 1.6E-10 3.5E-15 99.0 6.8 113 82-208 22-147 (198)
421 cd04160 Arfrp1 Arfrp1 subfamil 99.1 2.5E-10 5.4E-15 93.9 7.0 97 174-272 53-166 (167)
422 cd04155 Arl3 Arl3 subfamily. 99.1 7.3E-10 1.6E-14 91.7 9.8 78 193-272 83-172 (173)
423 PRK12298 obgE GTPase CgtA; Rev 99.1 1.4E-09 3E-14 102.3 12.7 211 29-276 100-334 (390)
424 cd04164 trmE TrmE (MnmE, ThdF, 99.1 9.4E-10 2E-14 88.9 10.0 75 191-274 80-156 (157)
425 PF02421 FeoB_N: Ferrous iron 99.1 9.8E-11 2.1E-15 96.3 4.0 147 83-270 2-156 (156)
426 cd01878 HflX HflX subfamily. 99.1 1.6E-09 3.4E-14 92.6 11.1 75 192-273 121-203 (204)
427 PRK12299 obgE GTPase CgtA; Rev 99.1 1.9E-09 4.2E-14 99.4 12.3 208 30-276 100-329 (335)
428 cd03114 ArgK-like The function 99.1 2.7E-10 5.9E-15 93.1 5.9 141 83-227 1-148 (148)
429 KOG0062 ATPase component of AB 99.0 8.8E-10 1.9E-14 104.1 9.6 164 53-231 361-559 (582)
430 cd01898 Obg Obg subfamily. Th 99.0 2.2E-09 4.7E-14 88.4 10.8 80 192-273 79-169 (170)
431 KOG0065 Pleiotropic drug resis 99.0 2.7E-10 5.9E-15 117.6 5.8 167 71-240 130-351 (1391)
432 KOG0060 Long-chain acyl-CoA tr 99.0 1.3E-09 2.8E-14 104.2 9.5 143 54-204 433-600 (659)
433 TIGR02528 EutP ethanolamine ut 99.0 7.8E-09 1.7E-13 82.9 12.8 78 192-271 63-141 (142)
434 PRK12296 obgE GTPase CgtA; Rev 99.0 5.2E-09 1.1E-13 100.7 13.0 207 31-277 102-342 (500)
435 PRK00093 GTP-binding protein D 99.0 2.2E-09 4.8E-14 102.4 10.4 86 190-277 254-346 (435)
436 cd01895 EngA2 EngA2 subfamily. 99.0 5.2E-09 1.1E-13 85.7 11.0 84 191-274 84-174 (174)
437 cd04154 Arl2 Arl2 subfamily. 99.0 3E-09 6.6E-14 88.4 9.1 150 74-271 7-171 (173)
438 cd01860 Rab5_related Rab5-rela 99.0 9.1E-09 2E-13 84.1 11.7 80 193-274 75-162 (163)
439 PRK12297 obgE GTPase CgtA; Rev 99.0 8.5E-09 1.8E-13 97.8 13.0 204 30-276 100-328 (424)
440 cd04113 Rab4 Rab4 subfamily. 99.0 4.5E-09 9.7E-14 86.0 9.5 96 175-272 53-159 (161)
441 TIGR03594 GTPase_EngA ribosome 99.0 4.9E-09 1.1E-13 99.8 11.2 86 191-277 254-346 (429)
442 cd01897 NOG NOG1 is a nucleola 99.0 6.7E-09 1.5E-13 85.4 10.6 78 192-273 80-166 (168)
443 cd04119 RJL RJL (RabJ-Like) su 98.9 5.4E-09 1.2E-13 85.4 9.9 81 192-274 73-166 (168)
444 PRK13768 GTPase; Provisional 98.9 1.3E-08 2.8E-13 90.5 13.0 186 82-276 3-248 (253)
445 TIGR02729 Obg_CgtA Obg family 98.9 8.1E-09 1.8E-13 95.1 11.7 203 32-274 101-328 (329)
446 PRK03003 GTP-binding protein D 98.9 6.9E-09 1.5E-13 100.1 11.6 86 191-278 293-385 (472)
447 cd04139 RalA_RalB RalA/RalB su 98.9 7.4E-09 1.6E-13 84.4 10.0 99 175-275 52-162 (164)
448 cd04171 SelB SelB subfamily. 98.9 1.2E-08 2.7E-13 83.1 11.3 82 191-272 74-163 (164)
449 COG0536 Obg Predicted GTPase [ 98.9 4.5E-09 9.7E-14 95.1 9.2 213 24-277 95-335 (369)
450 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 7E-09 1.5E-13 85.1 9.8 81 191-274 73-165 (168)
451 cd00820 PEPCK_HprK Phosphoenol 98.9 5.7E-10 1.2E-14 85.8 2.9 62 70-136 3-65 (107)
452 COG2262 HflX GTPases [General 98.9 4.7E-09 1E-13 97.0 9.4 157 80-275 191-356 (411)
453 PRK09518 bifunctional cytidyla 98.9 5.8E-09 1.3E-13 105.4 10.8 84 192-277 533-623 (712)
454 cd03280 ABC_MutS2 MutS2 homolo 98.9 1.2E-09 2.5E-14 93.7 4.7 30 178-207 93-123 (200)
455 cd04159 Arl10_like Arl10-like 98.9 8.9E-09 1.9E-13 82.9 9.7 80 192-272 68-158 (159)
456 cd01863 Rab18 Rab18 subfamily. 98.9 1.5E-08 3.3E-13 82.7 11.0 97 174-273 52-160 (161)
457 cd04136 Rap_like Rap-like subf 98.9 1E-08 2.2E-13 83.7 9.9 80 192-273 73-161 (163)
458 cd04110 Rab35 Rab35 subfamily. 98.9 1.5E-08 3.3E-13 86.5 11.3 81 193-275 80-167 (199)
459 cd01888 eIF2_gamma eIF2-gamma 98.9 1.6E-08 3.4E-13 86.8 11.4 101 173-275 85-199 (203)
460 PRK14974 cell division protein 98.9 1.1E-08 2.5E-13 94.1 11.0 170 80-269 139-324 (336)
461 cd01865 Rab3 Rab3 subfamily. 98.9 2.9E-08 6.3E-13 81.8 12.4 98 175-274 54-162 (165)
462 cd04137 RheB Rheb (Ras Homolog 98.9 2.6E-08 5.7E-13 83.1 12.2 101 175-277 53-165 (180)
463 cd00154 Rab Rab family. Rab G 98.9 2.3E-08 5E-13 80.4 11.4 95 175-271 53-158 (159)
464 TIGR03156 GTP_HflX GTP-binding 98.9 7.9E-09 1.7E-13 96.0 9.8 154 80-273 188-350 (351)
465 PRK06995 flhF flagellar biosyn 98.9 1.5E-08 3.2E-13 97.2 11.8 163 79-267 254-435 (484)
466 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.9 2.6E-08 5.7E-13 81.9 11.8 81 192-274 75-163 (166)
467 smart00173 RAS Ras subfamily o 98.9 1.6E-08 3.4E-13 82.8 10.4 82 192-275 72-162 (164)
468 cd01868 Rab11_like Rab11-like. 98.9 2.9E-08 6.3E-13 81.4 11.9 97 175-273 56-163 (165)
469 PRK04213 GTP-binding protein; 98.9 2.9E-08 6.2E-13 84.5 12.0 55 217-276 131-193 (201)
470 smart00175 RAB Rab subfamily o 98.9 2E-08 4.4E-13 81.9 10.7 82 192-275 73-162 (164)
471 KOG1489 Predicted GTP-binding 98.9 2.2E-08 4.9E-13 89.7 11.6 204 29-273 137-365 (366)
472 cd04123 Rab21 Rab21 subfamily. 98.9 3.2E-08 6.9E-13 80.4 11.8 80 192-273 73-160 (162)
473 cd01861 Rab6 Rab6 subfamily. 98.9 1.4E-08 3.1E-13 82.8 9.7 79 193-273 74-160 (161)
474 PRK14723 flhF flagellar biosyn 98.9 1.7E-08 3.8E-13 101.1 11.9 166 80-267 184-367 (767)
475 cd00880 Era_like Era (E. coli 98.9 6.9E-09 1.5E-13 83.0 7.5 80 192-273 76-162 (163)
476 cd01864 Rab19 Rab19 subfamily. 98.9 3.8E-08 8.2E-13 80.9 12.1 98 174-272 55-163 (165)
477 cd04138 H_N_K_Ras_like H-Ras/N 98.9 2.2E-08 4.9E-13 81.3 10.5 79 192-273 73-160 (162)
478 cd01866 Rab2 Rab2 subfamily. 98.9 4.3E-08 9.3E-13 81.1 12.3 81 192-274 77-165 (168)
479 cd01867 Rab8_Rab10_Rab13_like 98.9 4.1E-08 8.9E-13 81.0 12.1 81 192-274 76-164 (167)
480 KOG0064 Peroxisomal long-chain 98.9 5.7E-09 1.2E-13 99.0 7.4 124 70-204 496-642 (728)
481 COG2401 ABC-type ATPase fused 98.8 4.7E-09 1E-13 97.2 6.6 122 70-201 397-533 (593)
482 cd04145 M_R_Ras_like M-Ras/R-R 98.8 3.3E-08 7.2E-13 80.7 11.0 80 192-273 74-162 (164)
483 cd04175 Rap1 Rap1 subgroup. T 98.8 3.1E-08 6.7E-13 81.3 10.8 81 192-274 73-162 (164)
484 COG0218 Predicted GTPase [Gene 98.8 2.6E-08 5.7E-13 84.2 10.5 166 80-275 23-197 (200)
485 cd04114 Rab30 Rab30 subfamily. 98.8 3E-08 6.4E-13 81.6 10.7 80 192-273 80-167 (169)
486 cd04106 Rab23_lke Rab23-like s 98.8 3.5E-08 7.5E-13 80.5 11.0 98 173-272 53-160 (162)
487 cd04156 ARLTS1 ARLTS1 subfamil 98.8 1.3E-08 2.7E-13 83.1 8.3 79 192-272 68-159 (160)
488 cd04140 ARHI_like ARHI subfami 98.8 2.6E-08 5.7E-13 82.0 10.0 80 192-273 73-163 (165)
489 cd04101 RabL4 RabL4 (Rab-like4 98.8 3.9E-08 8.4E-13 80.5 11.0 99 174-274 55-163 (164)
490 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.8 2.7E-08 5.8E-13 83.8 10.2 99 175-275 56-170 (183)
491 cd04109 Rab28 Rab28 subfamily. 98.8 2.3E-08 4.9E-13 86.5 10.0 99 175-275 54-166 (215)
492 cd01862 Rab7 Rab7 subfamily. 98.8 4.4E-08 9.6E-13 80.6 11.2 84 192-276 73-168 (172)
493 PRK05291 trmE tRNA modificatio 98.8 1.8E-08 3.9E-13 96.7 9.9 156 80-276 214-371 (449)
494 cd04125 RabA_like RabA-like su 98.8 5.2E-08 1.1E-12 82.1 11.5 83 192-276 73-163 (188)
495 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 5.6E-08 1.2E-12 83.0 11.8 82 193-275 75-168 (201)
496 cd04112 Rab26 Rab26 subfamily. 98.8 7.8E-08 1.7E-12 81.4 12.5 101 175-277 54-165 (191)
497 smart00178 SAR Sar1p-like memb 98.8 2.4E-08 5.3E-13 84.1 9.2 79 192-272 85-182 (184)
498 cd01881 Obg_like The Obg-like 98.8 1.2E-08 2.7E-13 84.1 7.3 55 216-272 120-174 (176)
499 PF00009 GTP_EFTU: Elongation 98.8 1.2E-08 2.5E-13 86.4 7.2 83 191-275 93-187 (188)
500 cd04127 Rab27A Rab27a subfamil 98.8 3.7E-08 8.1E-13 82.0 10.1 100 173-274 65-176 (180)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.6e-35 Score=258.54 Aligned_cols=198 Identities=27% Similarity=0.276 Sum_probs=168.3
Q ss_pred cccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (283)
..+.+++|. ..+.+++++|..+ |++++|+||||||||||||+|+|+++|. |+|.+++.++.++...++.+.++|||
T Consensus 5 ~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 5 VENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred EEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence 345667766 5568899999855 9999999999999999999999999987 99999999999999999999999999
Q ss_pred CchH--------HHHHhCCCCCCCh-----HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEE
Q 023354 135 EERI--------RAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYII 199 (283)
Q Consensus 135 q~~~--------~~i~~~g~~~~~~-----~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~ll 199 (283)
|.+. +++.+|..|+... +++.+.+.++|+.++..+..++.+.+ ||||+||+.|||+|++ +.++++
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence 9853 6678888886532 34556788899999999999999998 9999999999999996 777777
Q ss_pred e-CCCCCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEE
Q 023354 200 D-VSGGDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF 254 (283)
Q Consensus 200 D-pt~g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~ 254 (283)
| ||+.+|+.. +.+.+ .+|||+++++|.|++.+.|++.+++....++..|+.++..
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~~~~ 242 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDADV 242 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCceEE
Confidence 7 999876532 21222 3899999999999999999999999999999999988655
Q ss_pred EE
Q 023354 255 AQ 256 (283)
Q Consensus 255 is 256 (283)
+.
T Consensus 243 ~~ 244 (258)
T COG1120 243 IE 244 (258)
T ss_pred EE
Confidence 44
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.4e-29 Score=211.61 Aligned_cols=172 Identities=20% Similarity=0.170 Sum_probs=132.4
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC-CHHHHHHhccccCCchHHH-----
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIRA----- 140 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~-~~~~~~~~ig~v~q~~~~~----- 140 (283)
..+|+++++.. +|++++|+||+||||||||++|.++..++ |+|.+++.++... +...+|+++|+|||....+
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTv 94 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTV 94 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchH
Confidence 34788999985 59999999999999999999999999988 9999999776533 4567889999999985421
Q ss_pred ---HHhCCC--CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc-----
Q 023354 141 ---VETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI----- 207 (283)
Q Consensus 141 ---i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l----- 207 (283)
+..+-. ......+....+.+.|+.+++.+..+.+... ||||+||++|||+|+ +|.++|+| ||+.+|.
T Consensus 95 leNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~E 174 (240)
T COG1126 95 LENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGE 174 (240)
T ss_pred HHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHH
Confidence 111100 0001123334667889999999988888877 999999999999998 69999988 9998653
Q ss_pred --------hhhcCCcc----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 208 --------PRKGGPGI----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 208 --------~~~~~~~i----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
..+..+++ +.||+|+++..|.++++|++.+.+.
T Consensus 175 VL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 175 VLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 22222221 6799999999999999998887775
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.4e-29 Score=218.99 Aligned_cols=188 Identities=20% Similarity=0.246 Sum_probs=145.4
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+..+.|... +++.+++|.. +|++++|+||||||||||+|+|+|+++|. |+|.+.+.+...... +.+|||
T Consensus 5 i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgY 79 (254)
T COG1121 5 IEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGY 79 (254)
T ss_pred EEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEE
Confidence 4555666666655 5999999974 59999999999999999999999999997 999999887654322 357999
Q ss_pred cCCchH----------HHHHhCCCCCCC-----hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-Cc
Q 023354 133 LPEERI----------RAVETGGCPHAA-----IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YI 195 (283)
Q Consensus 133 v~q~~~----------~~i~~~g~~~~~-----~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~ 195 (283)
|||... +++.++.+.... ...+.+.+.++|+.++..+..++.+.+ ||||+||+.|||||+. |.
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ 159 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPD 159 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCC
Confidence 999642 456666444431 234556788999999999999999999 9999999999999995 88
Q ss_pred EEEEe-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC
Q 023354 196 IYIID-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRDG 249 (283)
Q Consensus 196 l~llD-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~ 249 (283)
++|+| |++|.|.. .+ +.+ ..++|+|++++...+ +.|++.+++........++
T Consensus 160 lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~~~~-~~G~~~~~~~~~~l~~~~g 236 (254)
T COG1121 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLI-ASGPPEEVLTEENLEKAFG 236 (254)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcCeeE-eccChhhccCHHHHHHHhC
Confidence 88888 99986532 22 222 278999999987655 5688988888655554444
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=9.8e-29 Score=213.19 Aligned_cols=179 Identities=20% Similarity=0.182 Sum_probs=142.3
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+.+.+++..|. ...++++++|+.. |++++++||+||||||+||+|.+++.|+ |+|.+++.++...+..++|++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 34566776666 4568889999865 9999999999999999999999999998 999999999999999999999999
Q ss_pred cCCchHHHHHhCCCCCCChHH--------------HH-HHHHHHHHHcccc--ccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354 133 LPEERIRAVETGGCPHAAIRE--------------DI-SINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 133 v~q~~~~~i~~~g~~~~~~~~--------------~~-~~~~~~l~~l~~~--~~~d~~i~e-SgGq~q~~~ia~al~-~ 193 (283)
|-|.. +.+|+.++.+ .. .++.+.|+.+++. ...+++..| ||||+||+.+||||+ +
T Consensus 80 viQqi------gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 80 VIQQI------GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred hhhhc------ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 98753 3344433322 22 2455667777664 367888888 999999999999998 6
Q ss_pred CcEEEEe-CCCCCC-------------chhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 194 YIIYIID-VSGGDK-------------IPRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 194 ~~l~llD-pt~g~~-------------l~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
|.|+|+| |.+..| ++++.+.+ +..+|+|++++.|++...++|.+.+..
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 8888888 887643 23333333 378999999999999999998887764
No 5
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.7e-28 Score=206.60 Aligned_cols=187 Identities=21% Similarity=0.195 Sum_probs=152.8
Q ss_pred CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------
Q 023354 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (283)
Q Consensus 68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (283)
.+..+++++|.-+ ||+++|+||||||||||||.|+|.+.|+ |++.+.+.++.++.+.++.+..+++||+..
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence 3456788888865 9999999999999999999999999988 999999999999999999999999999863
Q ss_pred -HHHHhCCCCCCCh---HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-------CcEEEEe-CCCCC
Q 023354 139 -RAVETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-------YIIYIID-VSGGD 205 (283)
Q Consensus 139 -~~i~~~g~~~~~~---~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-------~~l~llD-pt~g~ 205 (283)
+++.+|..++..- .++.+.....|..........+.+.+ |||++||+.+||.|++ +.++++| ||+..
T Consensus 93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL 172 (259)
T COG4559 93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL 172 (259)
T ss_pred HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc
Confidence 6778888888542 24444456677777777766776666 9999999999999984 3356666 99988
Q ss_pred Cchhhc-----------------------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEE
Q 023354 206 KIPRKG-----------------------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF 254 (283)
Q Consensus 206 ~l~~~~-----------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~ 254 (283)
|+..+. +....|||+|++++.|++++.|++.+++..+.++..|+.++..
T Consensus 173 Di~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg~~~~V 244 (259)
T COG4559 173 DIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADIRV 244 (259)
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhCCceee
Confidence 764321 0113899999999999999999999999999999999887654
No 6
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=1.1e-28 Score=244.72 Aligned_cols=197 Identities=18% Similarity=0.150 Sum_probs=159.3
Q ss_pred ccCCCCCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC
Q 023354 45 YHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE 122 (283)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~ 122 (283)
.......+|.+.+.+++|.|..+..+.+++.++..+ |++|+|+|++|||||||+|+|+|+++|+ |+|.+++.|+...+
T Consensus 462 ~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~ 541 (709)
T COG2274 462 LIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID 541 (709)
T ss_pred cccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcC
Confidence 456667789999999999999998899999999966 9999999999999999999999999998 99999999999999
Q ss_pred HHHHHHhccccCCchH------HHHHhCCCCCCChHHHHH-HHHHHHHHcc--ccccCCCcccC-----CchHHHHHHHH
Q 023354 123 DGEFLMRNGALPEERI------RAVETGGCPHAAIREDIS-INLGPLEELS--NLFKADLLLCE-----SGGDNLAANFS 188 (283)
Q Consensus 123 ~~~~~~~ig~v~q~~~------~~i~~~g~~~~~~~~~~~-~~~~~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia 188 (283)
...+|+.+|||+|++. ..+...+.|..+..+..+ .....+.++. ...+++.++.| |||||||++||
T Consensus 542 ~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalA 621 (709)
T COG2274 542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621 (709)
T ss_pred HHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence 9999999999999975 223344555555443333 2222333332 34588999988 99999999999
Q ss_pred HHhc-CCcEEEEe-CCCCCCchhhc---------------------CCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354 189 RELA-DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 189 ~al~-~~~l~llD-pt~g~~l~~~~---------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
|++. +|.|+++| ||+..|...+. ..+++.||+|++++.|+++++|+..+.+..
T Consensus 622 RaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 622 RALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9998 58888888 88886532210 123589999999999999999999887764
No 7
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=217.95 Aligned_cols=185 Identities=18% Similarity=0.086 Sum_probs=143.8
Q ss_pred ccccCCCCCCCCC---CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHH
Q 023354 56 HEPIYSPGYFSRR---APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFL 127 (283)
Q Consensus 56 ~~~~~~~~~~~~~---~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~ 127 (283)
.+..++..|+... ..+++++++..+ |+++||+|++|||||||++++.++.+|+ |+|.+++.++..++. .++|
T Consensus 3 ~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R 82 (339)
T COG1135 3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLR 82 (339)
T ss_pred EEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHH
Confidence 3444554555422 357899999865 9999999999999999999999999998 999999999887764 4567
Q ss_pred HhccccCCchHH--------HHHhCCCCCCChH-HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354 128 MRNGALPEERIR--------AVETGGCPHAAIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII 196 (283)
Q Consensus 128 ~~ig~v~q~~~~--------~i~~~g~~~~~~~-~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l 196 (283)
++||++||.+.. .+.++.......+ +...++.+.|+.+++.+..+.+..+ ||||||||+|||||+ +|.|
T Consensus 83 ~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~i 162 (339)
T COG1135 83 QKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKI 162 (339)
T ss_pred hhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCE
Confidence 889999998742 2222221111223 3344788899999999988888888 999999999999999 5999
Q ss_pred EEEe-CCCCCCc-------------hhhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 197 YIID-VSGGDKI-------------PRKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 197 ~llD-pt~g~~l-------------~~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|.| ||+.+|. +++.+.++ +.||+|.++..|++++.|+..++|.
T Consensus 163 LL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 163 LLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred EEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 9988 8887653 33444432 7899999999999999999888875
No 8
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3e-28 Score=235.53 Aligned_cols=192 Identities=18% Similarity=0.183 Sum_probs=153.9
Q ss_pred CCCCccccccCCCCCCCCCC-CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH
Q 023354 50 GLAPHSHEPIYSPGYFSRRA-PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF 126 (283)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~ 126 (283)
...|.+.|.+++|.||.++. +.+++.+|+.+ |++|+|+||+|+||||+.++|..+|.|+ |+|.+++.|+.+++...+
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 57899999999999999976 57899999966 9999999999999999999999999998 999999999999999999
Q ss_pred HHhccccCCchH------HHHHhCCCCCCChHHHHHH-HHHHHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354 127 LMRNGALPEERI------RAVETGGCPHAAIREDISI-NLGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA 192 (283)
Q Consensus 127 ~~~ig~v~q~~~------~~i~~~g~~~~~~~~~~~~-~~~~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~ 192 (283)
++.||+|.|+|. ..+...|++..+..+.... ......+| ...++++..++| |||||||++|||||.
T Consensus 541 r~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 999999999985 2233445665443332211 11122223 234678999998 999999999999999
Q ss_pred -CCcEEEEe-CCCCCCchhhc---------------------CCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354 193 -DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~~---------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+|.|+++| +|+.+|-..++ ..+++.||+|++++.|++.+.|+..+.+..
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhC
Confidence 59888888 88875422111 123589999999999999999988887764
No 9
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.8e-28 Score=208.48 Aligned_cols=194 Identities=20% Similarity=0.145 Sum_probs=147.3
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHh
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMR 129 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ 129 (283)
+...+++..|| ....++.+++|..+ ||+|+|+|++||||||||++|.|+..|+ |+|.+.+.++..... .++++.
T Consensus 4 i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 4 IEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 45566677777 55678999999865 9999999999999999999999999998 999999988887654 456778
Q ss_pred ccccCCchH--------HHHHhCCCCCCC---------hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHh
Q 023354 130 NGALPEERI--------RAVETGGCPHAA---------IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 130 ig~v~q~~~--------~~i~~~g~~~~~---------~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
+||+||.+. +.+..|...+.. .+++...++++|+.++..+..-..... ||||+|||+|||+|
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL 162 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARAL 162 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHH
Confidence 999999874 233344333321 245556778899998877655444444 99999999999999
Q ss_pred cC-CcEEEEe-CCCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHh
Q 023354 192 AD-YIIYIID-VSGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALR 245 (283)
Q Consensus 192 ~~-~~l~llD-pt~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~ 245 (283)
++ |.|+|-| |++.+|. .++.+.+ .+||+||+-+|.|+++++|++.+ +.+....
T Consensus 163 ~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e-l~~~~~~ 241 (258)
T COG3638 163 VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE-LTDEALD 241 (258)
T ss_pred hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh-hhHHHHH
Confidence 96 8888887 8877543 2222222 28999999999999999999877 4555555
Q ss_pred hcCCC
Q 023354 246 MRDGG 250 (283)
Q Consensus 246 ~~~~~ 250 (283)
..|+.
T Consensus 242 ~iYg~ 246 (258)
T COG3638 242 EIYGN 246 (258)
T ss_pred HHhcc
Confidence 55554
No 10
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6e-28 Score=211.06 Aligned_cols=187 Identities=20% Similarity=0.128 Sum_probs=148.0
Q ss_pred ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC-CCHHHHHHhc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-KEDGEFLMRN 130 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~-~~~~~~~~~i 130 (283)
.+.+..+++.|++. .+++.+++|..+ |+.++|+|+||||||||+++|+|+++|+ |.|.+.+.++.. ....++++++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 34556777788777 788999999865 9999999999999999999999999998 999888888763 5677889999
Q ss_pred cccCCchHH---------HHHhCCCCCCChH-HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354 131 GALPEERIR---------AVETGGCPHAAIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (283)
Q Consensus 131 g~v~q~~~~---------~i~~~g~~~~~~~-~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l 198 (283)
|+|+|++.. .+.++........ +...++.+.|+.++.....++.+.+ ||||+||++||.+|+ +|.+++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili 161 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL 161 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence 999999852 2334433332223 3334677889999888888887777 999999999999998 688888
Q ss_pred Ee-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 199 ID-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 199 lD-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+| ||++.|.. .+.+.+ ..+||++++++.|+++.+|++.+++..
T Consensus 162 LDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 162 LDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 88 99986532 221222 278999999999999999998887764
No 11
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=9.5e-28 Score=218.28 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=135.3
Q ss_pred CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HH
Q 023354 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (283)
Q Consensus 71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~ 140 (283)
+++++++..+ |++++|+||+|||||||||+|+|+..|+ |+|.+.+.++...++.+ |.+++|||+.. +.
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCccccCCCcHHHH
Confidence 8889999865 9999999999999999999999999998 99999999999888765 78999999853 12
Q ss_pred HHhCCCCCCChHHH-HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc---------
Q 023354 141 VETGGCPHAAIRED-ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI--------- 207 (283)
Q Consensus 141 i~~~g~~~~~~~~~-~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l--------- 207 (283)
+.++.......++. ..++.+.++.+.+.+..++.+.+ ||||+||+++|||++ +|.++|+| |.+.+|.
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e 175 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHH
Confidence 22222211112223 23667788888888899998888 999999999999999 59999999 8886432
Q ss_pred ----hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHH
Q 023354 208 ----PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMERD 242 (283)
Q Consensus 208 ----~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~ 242 (283)
.++.+.+ +..||+|++++.|.+.+.|++.+++.+.
T Consensus 176 i~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 176 IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 2222322 3789999999999999999999988754
No 12
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=4.3e-27 Score=215.08 Aligned_cols=183 Identities=17% Similarity=0.120 Sum_probs=141.9
Q ss_pred ccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (283)
.+.++.-.|- ...+++++++..+ |++++|+||+||||||||++|+|+..|+ |+|.+.+.++...++. .|.+|+|
T Consensus 7 ~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~V 82 (352)
T COG3842 7 EIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMV 82 (352)
T ss_pred EEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccccee
Confidence 3344444443 5568899999865 9999999999999999999999999998 9999999999887765 4789999
Q ss_pred CCchH--------HHHHhCCCCCCC-hHH-HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 134 PEERI--------RAVETGGCPHAA-IRE-DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 134 ~q~~~--------~~i~~~g~~~~~-~~~-~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
||+.. +.+.+|...... .++ ...++.+.|+.+.+....++.+.+ ||||+||+++||||+ +|.|+|+|
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 99842 334444431111 112 234677888888888888888888 999999999999999 58888888
Q ss_pred CCCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHH
Q 023354 201 VSGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMERD 242 (283)
Q Consensus 201 pt~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~ 242 (283)
|.+.+|. +++.+.+ +.++|+|++|+.|++...|++.+.+...
T Consensus 163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 8887542 2222222 3789999999999999999999988743
No 13
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.9e-27 Score=194.90 Aligned_cols=187 Identities=19% Similarity=0.157 Sum_probs=155.7
Q ss_pred CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH------
Q 023354 67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (283)
Q Consensus 67 ~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------ 138 (283)
..+..+.++++..+ |.+++|+|||||||||||.+++++++.+ |+|.+++.++..++..++.+++.++-|+..
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 34567888888755 9999999999999999999999999987 999999999999999999999999988753
Q ss_pred --HHHHhCCCCCCCh---HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchh-
Q 023354 139 --RAVETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPR- 209 (283)
Q Consensus 139 --~~i~~~g~~~~~~---~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~- 209 (283)
+.+.+|.+|+..- .++...+.++++.+.+....|+.+-| ||||+||+.+|+.+++ .-.+++| |.+.+|...
T Consensus 92 V~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHs 171 (252)
T COG4604 92 VRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171 (252)
T ss_pred HHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHH
Confidence 4567899988642 45556777889999888888998888 9999999999999995 4455555 998866432
Q ss_pred ------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeE
Q 023354 210 ------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFI 253 (283)
Q Consensus 210 ------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~ 253 (283)
+.+.++ .|+|.||.+|.|+++..|++.+++...+++..|..++-
T Consensus 172 v~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiydm~i~ 238 (252)
T COG4604 172 VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIYDMDIP 238 (252)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHhcCCce
Confidence 222221 78999999999999999999999999999999887753
No 14
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.94 E-value=1.9e-26 Score=192.30 Aligned_cols=183 Identities=51% Similarity=0.814 Sum_probs=159.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhC-CCCCCChHHHHHHHHH
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG-GCPHAAIREDISINLG 160 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~-g~~~~~~~~~~~~~~~ 160 (283)
..++++||+|||||||+..++..++...++.++.+|+.+..|+++.++. +..+...+.+| +| + ++...+..
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~C-H----~da~m~~~ 85 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGC-H----LDASMNLE 85 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCcc-C----CcHHHHHH
Confidence 5899999999999999999999988778999999999987777766652 44455667888 77 4 34556677
Q ss_pred HHHHcccccc-CCCcccCCchHHHHHHHHHHhcC-CcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHH
Q 023354 161 PLEELSNLFK-ADLLLCESGGDNLAANFSRELAD-YIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 161 ~l~~l~~~~~-~d~~i~eSgGq~q~~~ia~al~~-~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+++++..... .|.+++||+| +....++..|.+ ..|+|+|.+.|++++++.++.+..||.+||||.|++.+.|...++
T Consensus 86 ai~~l~~~~~~~Dll~iEs~G-NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~aDllVInK~DLa~~v~~dlev 164 (202)
T COG0378 86 AIEELVLDFPDLDLLFIESVG-NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYVGADLEV 164 (202)
T ss_pred HHHHHhhcCCcCCEEEEecCc-ceecccCcchhhceEEEEEECCCCCCCcccCCCceeEeeEEEEehHHhHHHhCccHHH
Confidence 8888766554 7999999999 888888888987 899999999999999996666666999999999999999999999
Q ss_pred HhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354 239 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 239 ~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~ 273 (283)
|.+.+++.+|..|++++|+++|+|+++|++|+...
T Consensus 165 m~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 165 MARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 99999999999999999999999999999998754
No 15
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=4e-26 Score=231.75 Aligned_cols=195 Identities=18% Similarity=0.152 Sum_probs=153.8
Q ss_pred CCCCCCCccccccCCCCCCCCCC-CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH
Q 023354 47 SHDGLAPHSHEPIYSPGYFSRRA-PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED 123 (283)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~ 123 (283)
......|.++++++.|.||.+.+ ..+++.+|..+ |++++|+||+||||||++++|.++|.|+ |+|.+++.|+...+.
T Consensus 343 ~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~ 422 (1228)
T KOG0055|consen 343 VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL 422 (1228)
T ss_pred cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch
Confidence 44456899999999999999986 57888999866 9999999999999999999999999998 999999999999999
Q ss_pred HHHHHhccccCCchHHH------HHhCCCCCCChHHHHHHH-HHHHHHc--cccccCCCcccC-----CchHHHHHHHHH
Q 023354 124 GEFLMRNGALPEERIRA------VETGGCPHAAIREDISIN-LGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSR 189 (283)
Q Consensus 124 ~~~~~~ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~-~~~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~ 189 (283)
..+|.+||+|.|+|..+ +..-|.+..+..+..+.. ......+ .+..+++..++| |||||||++|||
T Consensus 423 ~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 423 KWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIAR 502 (1228)
T ss_pred HHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHH
Confidence 99999999999998533 223345554433222111 0111222 235578888887 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchhhc------------C---------CcccccCEEEEEcCCcccccCChHHHHhH
Q 023354 190 ELA-DYIIYIID-VSGGDKIPRKG------------G---------PGITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~~~------------~---------~~i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+|+ +|.|+|+| ||+++|...+. . .+++.||+|++++.|++++.|+..|++..
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhc
Confidence 999 59999988 99987643221 1 23588999999999999999999888753
No 16
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=3.8e-26 Score=214.42 Aligned_cols=191 Identities=22% Similarity=0.252 Sum_probs=144.4
Q ss_pred ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (283)
...+..+.|.. ...+++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++......++++.+||+
T Consensus 5 ~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 5 DVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred EEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 34455556643 45789999985 59999999999999999999999999987 9999999998877777888899999
Q ss_pred CCchH--------HHHHhCCCCCC---C--hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEE
Q 023354 134 PEERI--------RAVETGGCPHA---A--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYI 198 (283)
Q Consensus 134 ~q~~~--------~~i~~~g~~~~---~--~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~l 198 (283)
+|++. +.+.++..++. . ...+...+.+.++.++.....++.+.+ |+||+||+.|||+|++ |.+++
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL 162 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL 162 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99753 23334433221 0 123334566788888877777888877 9999999999999995 88888
Q ss_pred Ee-CCCCCCchhh------------cCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcC
Q 023354 199 ID-VSGGDKIPRK------------GGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRD 248 (283)
Q Consensus 199 lD-pt~g~~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~ 248 (283)
+| |++++|...+ .+.+ .++||++++++.|++.+.|++.+++........+
T Consensus 163 LDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~~~~ 236 (402)
T PRK09536 163 LDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAF 236 (402)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHHHHh
Confidence 88 9999764311 1222 1689999999999999999988877654433333
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.9e-26 Score=200.22 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=127.2
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee---cCCCCCHHHHHHhccccCCchH-----
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTKEDGEFLMRNGALPEERI----- 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~---d~~~~~~~~~~~~ig~v~q~~~----- 138 (283)
.++++++++..+ |+.++|+|||||||||||++|+|+..|+ |.|.+.+. |.... ....++||||+|+..
T Consensus 15 ~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDRKVGFVFQHYALFPHM 92 (345)
T ss_pred ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhcceeEEEechhhcccc
Confidence 356778888866 9999999999999999999999999998 99999998 54442 233478999999864
Q ss_pred ---HHHHhCCCCC-CC--hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-
Q 023354 139 ---RAVETGGCPH-AA--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP- 208 (283)
Q Consensus 139 ---~~i~~~g~~~-~~--~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~- 208 (283)
..+.+|.... +. ..+....+.+.|..+.+....++.+.. ||||+||+++||+|+ .|.++|+| |.+..|-+
T Consensus 93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~v 172 (345)
T COG1118 93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172 (345)
T ss_pred hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHH
Confidence 2344443111 11 112223555667777666666666666 999999999999998 68888888 87765421
Q ss_pred ------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 209 ------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 209 ------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
.+.+.+ ++.||+|++++.|+|...|++.+++..
T Consensus 173 r~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 173 RKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred HHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 121211 388999999999999999999888764
No 18
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=5.8e-26 Score=194.73 Aligned_cols=186 Identities=22% Similarity=0.189 Sum_probs=140.7
Q ss_pred CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHH
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFL 127 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~ 127 (283)
..+....+++.| .....+++++|.. +|++++|+||+|||||||||.|.|+++|+ |+|.+++.++...+.. +++
T Consensus 7 ~~I~vr~v~~~f--G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeec--CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 345555666554 2345788999985 59999999999999999999999999998 9999999999876543 567
Q ss_pred HhccccCCchH--------HHHHhCCCCCCChH-HHH-HHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CC
Q 023354 128 MRNGALPEERI--------RAVETGGCPHAAIR-EDI-SINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 128 ~~ig~v~q~~~--------~~i~~~g~~~~~~~-~~~-~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~ 194 (283)
+++|++||... +.+.+.-..+.... ..+ +.+...|+.+++... .++...| ||||++|+++|||++ +|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 88999999753 22222222222222 222 245567788887776 7888888 999999999999998 78
Q ss_pred cEEEEe-CCCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 195 IIYIID-VSGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 195 ~l~llD-pt~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.|+++| ||+|+|. +...+.+ ...||+++++..+++.+.|++.+...
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 888888 9999753 2222222 37899999999999999999887765
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=8.2e-26 Score=194.95 Aligned_cols=162 Identities=19% Similarity=0.124 Sum_probs=117.3
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---H-HHhccccCCchH----
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI---- 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~-~~~ig~v~q~~~---- 138 (283)
..++++++|..+ |++++|+||+||||||||++|.|+.+|+ |.+.+.+.++...+..+ + ++.+|||||+..
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 468899999855 9999999999999999999999999998 99999999998776433 3 456999999853
Q ss_pred ----HHHHhCCCCCCChH-HHHHHHHHHHHHccccccCC-CcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCch-
Q 023354 139 ----RAVETGGCPHAAIR-EDISINLGPLEELSNLFKAD-LLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIP- 208 (283)
Q Consensus 139 ----~~i~~~g~~~~~~~-~~~~~~~~~l~~l~~~~~~d-~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~- 208 (283)
+.+.++........ .........++.+++.+... ..+.+ ||||+||++||||++. |.+++.| ||...|..
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 33332211111111 12234445666667765544 66767 9999999999999994 8888888 88765422
Q ss_pred ------------hhcCCc----------ccccCEEEEEcCCccc
Q 023354 209 ------------RKGGPG----------ITQADLLVINKTDLAS 230 (283)
Q Consensus 209 ------------~~~~~~----------i~~ad~ivi~K~g~i~ 230 (283)
++.+.+ ..+||+++.++.|++.
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 222322 2789999999999843
No 20
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=7.9e-26 Score=204.64 Aligned_cols=171 Identities=22% Similarity=0.211 Sum_probs=130.2
Q ss_pred CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------
Q 023354 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (283)
Q Consensus 68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (283)
...++++++|..+ |+++||+||||||||||||+|+|+++|+ |+|.+.+.++... ..+.++++||+||++.
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~~lT~ 95 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYPELTV 95 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCCCCccccH
Confidence 4568999999965 9999999999999999999999999998 9999999888754 5677889999999874
Q ss_pred -HHHHhCC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-----
Q 023354 139 -RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP----- 208 (283)
Q Consensus 139 -~~i~~~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~----- 208 (283)
+.+.+.. +...........+.+.++.+++....+..+.. |+||+||+.||.+|+ +|.++++| ||+|.|..
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~ 175 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH
Confidence 2222211 11111112233566788888877645666666 999999999999998 58888888 99997642
Q ss_pred --------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 209 --------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 209 --------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.+.+.++ ..||+|++++.|++++.|+..+..
T Consensus 176 ~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred HHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 1121222 569999999999999999766533
No 21
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.1e-26 Score=190.85 Aligned_cols=175 Identities=18% Similarity=0.148 Sum_probs=129.6
Q ss_pred CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-----
Q 023354 67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR----- 139 (283)
Q Consensus 67 ~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~----- 139 (283)
+...++.+++|..+ |++++|+|+|||||||+|++|++++.|+ |.|.+++.|... .+...++.||+++.+.-.
T Consensus 13 ~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl~~e~glY~RlT 91 (245)
T COG4555 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYARLT 91 (245)
T ss_pred CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcceecCCcChhhhhh
Confidence 35558889999855 9999999999999999999999999998 999999998765 455678899999854321
Q ss_pred ---HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchhh--
Q 023354 140 ---AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPRK-- 210 (283)
Q Consensus 140 ---~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~~-- 210 (283)
.+.+-+..+ ....+...++.+..+.|.+....|+.+.+ |.|++|++.||||+++ |.++++| |++|.|+...
T Consensus 92 ~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~ 171 (245)
T COG4555 92 ARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK 171 (245)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHH
Confidence 111111111 11111122344455667777788888888 9999999999999995 9898888 9999875321
Q ss_pred --------c--CCc----------c-cccCEEEEEcCCcccccCChHHHHhHH
Q 023354 211 --------G--GPG----------I-TQADLLVINKTDLASAIGADLAVMERD 242 (283)
Q Consensus 211 --------~--~~~----------i-~~ad~ivi~K~g~i~~~g~~~e~~~~~ 242 (283)
. +.. + ..||+|++++.|.++..|+..+...+.
T Consensus 172 ~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred HHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 0 111 1 589999999999999999887766543
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=5.4e-26 Score=209.67 Aligned_cols=184 Identities=16% Similarity=0.092 Sum_probs=135.1
Q ss_pred cccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HHHh
Q 023354 57 EPIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMR 129 (283)
Q Consensus 57 ~~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~~~ 129 (283)
+.+++..|... ...++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..+ .++.
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~ 83 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQ 83 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 34444455422 235799999985 59999999999999999999999999998 99999999987665543 4668
Q ss_pred ccccCCchH--------HHHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354 130 NGALPEERI--------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (283)
Q Consensus 130 ig~v~q~~~--------~~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l 198 (283)
+||+||++. +.+.++.. ......+....+.+.++.+++.+..+..+.+ ||||+||++|||+|+ +|.++|
T Consensus 84 Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLL 163 (343)
T TIGR02314 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 163 (343)
T ss_pred EEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999999853 11222111 1111122233556778888887777888877 999999999999999 588888
Q ss_pred Ee-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 199 ID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 199 lD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+| |+++.|.. ++.+.++ ++||+|++++.|++.+.|+..+++.
T Consensus 164 lDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 164 CDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 88 99986532 1112221 6799999999999999888777653
No 23
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.8e-26 Score=212.94 Aligned_cols=193 Identities=17% Similarity=0.183 Sum_probs=150.2
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHH
Q 023354 47 SHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGE 125 (283)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~ 125 (283)
......+.+.+.++++.|.+ .++.+++++|+.+ |++|||+|+|||||||+||+|.+.+..+|+|.++|.++...+...
T Consensus 344 ~i~~~~~~I~F~dV~f~y~~-k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 344 PIELFGGSIEFDDVHFSYGP-KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLES 422 (591)
T ss_pred CcccCCCcEEEEeeEEEeCC-CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHH
Confidence 33345566999999999874 3358899999965 999999999999999999999999997799999999999999999
Q ss_pred HHHhccccCCchHHHHH------hCCCCCCChHHHHHHHH-HHHHHcc--ccccCCCcccC-----CchHHHHHHHHHHh
Q 023354 126 FLMRNGALPEERIRAVE------TGGCPHAAIREDISINL-GPLEELS--NLFKADLLLCE-----SGGDNLAANFSREL 191 (283)
Q Consensus 126 ~~~~ig~v~q~~~~~i~------~~g~~~~~~~~~~~~~~-~~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al 191 (283)
+|+.||||||+...+.+ ..||+..+..+-.+.+. ..+.+.- ..++++..++| ||||+||+++||++
T Consensus 423 lR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred hhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 99999999999764433 45777776544333211 1222221 23477888888 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhhc-----------C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354 192 A-DYIIYIID-VSGGDKIPRKG-----------G----------PGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~~-----------~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+ ++.|+++| ||+..|-..+. . .++..||.|++++.|.+.+.|+..+.+.
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 8 67777777 88876532211 1 1247899999999999999999988876
No 24
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.93 E-value=2.1e-25 Score=191.10 Aligned_cols=193 Identities=58% Similarity=0.957 Sum_probs=155.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHHH
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP 161 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~ 161 (283)
..++|+||+|||||||++.+++.+.+...+.+..+++....+.++....++++|+....+.+++|+||..+.+.......
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 81 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEA 81 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHH
Confidence 47999999999999999999998877766888889988777788888889988877655668999999887766555666
Q ss_pred HHHccc-cccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHHHh
Q 023354 162 LEELSN-LFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 162 l~~l~~-~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|..+.. ....|.+++||.|..+...+...+++..|+++|++.+++++.+...++..||++++||.|+..+.+...+.+.
T Consensus 82 L~~l~~~~~~~D~iiIEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 82 VAEMEARFPPLEMVFIESGGDNLSATFSPELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred HHHHHhcCCCCCEEEEECCCCCcccccchhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccccccHHHHH
Confidence 666532 3468999999888433333334456789999999998877665556889999999999999865456677777
Q ss_pred HHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354 241 RDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 241 ~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
+.+...++.++++++|+++|+|+++|++++.+.+
T Consensus 162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 8888889999999999999999999999998654
No 25
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=2e-25 Score=226.63 Aligned_cols=191 Identities=19% Similarity=0.194 Sum_probs=152.2
Q ss_pred CCCCCccccccCCCCCCCCCC-CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH
Q 023354 49 DGLAPHSHEPIYSPGYFSRRA-PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE 125 (283)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~ 125 (283)
+...|.+.+.++.|.||.++. +.+++.++..+ |+.++|+||+||||||++.+|-+.|.|+ |.|.+++.|+..++..-
T Consensus 982 ~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen 982 PNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred ccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHH
Confidence 345788999999999998886 47899999966 9999999999999999999999999998 99999999999999999
Q ss_pred HHHhccccCCchHHH-------HHhCCCCCCChHHHHHH-HHHHHHHc--cccccCCCcccC-----CchHHHHHHHHHH
Q 023354 126 FLMRNGALPEERIRA-------VETGGCPHAAIREDISI-NLGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSRE 190 (283)
Q Consensus 126 ~~~~ig~v~q~~~~~-------i~~~g~~~~~~~~~~~~-~~~~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~a 190 (283)
+|+++|.|.|+|..+ +.+| ....+..+..+. .......| .+..++|..++| |||||||++||||
T Consensus 1062 LR~~i~lVsQEP~LF~~TIrENI~YG-~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFNGTIRENIAYG-SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HHHhcceeccCchhhcccHHHHHhcc-CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 999999999999633 3344 222232222211 11122233 346789999998 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhhc---------------------CCcccccCEEEEEcCCcccccCChHHHHh
Q 023354 191 LA-DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~~---------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++ +|.|+||| +|+.+|...+. ..+++.||.|++++.|++++.|+..+++.
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 98 69999999 88876532211 12468999999999999999999988775
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=2.1e-25 Score=185.05 Aligned_cols=151 Identities=17% Similarity=0.110 Sum_probs=121.1
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHh
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMR 129 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ 129 (283)
+.|.+++-.|+.. .++|++++|..+ |+++-|+||+|||||||||+|++..+|+ |+|.+.+.++..... .-+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 5678888889988 779999999865 9999999999999999999999999998 999999999987654 357889
Q ss_pred ccccCCchH--------HHHHhCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEE
Q 023354 130 NGALPEERI--------RAVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYI 198 (283)
Q Consensus 130 ig~v~q~~~--------~~i~~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~l 198 (283)
||+|||+.- +.+.++....... .+....+.+.|+.+++.+.......+ |||++||++||||+++ |.+++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl 160 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL 160 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence 999999852 2232222111111 22334677889999998888777777 9999999999999996 88999
Q ss_pred Ee-CCCCCC
Q 023354 199 ID-VSGGDK 206 (283)
Q Consensus 199 lD-pt~g~~ 206 (283)
-| ||...|
T Consensus 161 ADEPTGNLD 169 (223)
T COG2884 161 ADEPTGNLD 169 (223)
T ss_pred ecCCCCCCC
Confidence 88 777654
No 27
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=6.3e-26 Score=195.15 Aligned_cols=172 Identities=22% Similarity=0.189 Sum_probs=135.1
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH-hccccCCchH--------
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI-------- 138 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~-------- 138 (283)
.++++++|..+ |++++||||||||||||+|+|+|.++|+ |+|.+.+.++...++.++.+ .++..||..-
T Consensus 18 ~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVl 97 (250)
T COG0411 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVL 97 (250)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHH
Confidence 47889999855 9999999999999999999999999999 99999999999988877644 4666788652
Q ss_pred HHHHhCCC-----------CCC--ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354 139 RAVETGGC-----------PHA--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (283)
Q Consensus 139 ~~i~~~g~-----------~~~--~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt 202 (283)
+.+.++.. +.. ..++..+.+.+.|+.+++....+.+..+ |.||++++.|||+|+ +|.++++| |.
T Consensus 98 ENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPa 177 (250)
T COG0411 98 ENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA 177 (250)
T ss_pred HHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCcc
Confidence 22333211 000 1233344677889999999999998888 999999999999998 69999998 98
Q ss_pred CCCC-------------chhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 203 GGDK-------------IPRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 203 ~g~~-------------l~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
.|.. +.+..+.+ +.+||+|+++..|+++++|++.++...
T Consensus 178 AGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d 240 (250)
T COG0411 178 AGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence 8842 22222222 389999999999999999999988764
No 28
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.6e-25 Score=192.56 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=128.6
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC-CHHHHHHhccccCCchH--------
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERI-------- 138 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~-~~~~~~~~ig~v~q~~~-------- 138 (283)
.++++++|... |++++|+|++|||||||.++|+|+.+|+ |+|.+.+.++... +...+++.+.+|||++.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 58899999855 9999999999999999999999999998 9999999776543 34467788999999985
Q ss_pred --HHHHhCCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc-----
Q 023354 139 --RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI----- 207 (283)
Q Consensus 139 --~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l----- 207 (283)
+.+.-+.++.. ..+...++.+.|+.+++.. .+++...| ||||+||++|||||+ +|.++++| |++.+|.
T Consensus 101 v~~~l~Epl~~~~-~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~ 179 (252)
T COG1124 101 VGRILSEPLRPHG-LSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQ 179 (252)
T ss_pred HHHHHhhhhccCC-ccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHH
Confidence 11111122111 1112223677888888765 46777777 999999999999998 69988888 9987652
Q ss_pred --------hhhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 208 --------PRKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 208 --------~~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.++++.++ .+||+|++|+.|.+++.++..+++.
T Consensus 180 IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 180 ILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 23333321 6899999999999999877766543
No 29
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.93 E-value=2.3e-25 Score=218.76 Aligned_cols=190 Identities=20% Similarity=0.186 Sum_probs=145.9
Q ss_pred CCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354 51 LAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM 128 (283)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~ 128 (283)
..+.+.+.+++|+|++ ..+.+++++|.. +|++++|+||+|||||||+++|++++.|+ |+|.+++.|+...+...+++
T Consensus 325 ~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 325 TIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred CCCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHH
Confidence 3456899999999987 457899999985 59999999999999999999999999996 99999999999999999999
Q ss_pred hccccCCchH------HHHHhCCCCCCChHHHHHHHHH-HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 129 RNGALPEERI------RAVETGGCPHAAIREDISINLG-PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 129 ~ig~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~-~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
.+++|||++. ..+...|++..+..+..+.... .+.++- ..+++|.+++| ||||+||++|||++. +
T Consensus 404 ~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred hccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 9999999985 2233445555443332221111 122221 23478999986 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchhh-----------cC----------CcccccCEEEEEcCCcccccCChHHHHhH
Q 023354 194 YIIYIID-VSGGDKIPRK-----------GG----------PGITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~-----------~~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+.++++| ||+..|...+ .+ .+++.||+|++++.|++.+.|+..+.+..
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 7777776 8887543210 01 12467999999999999999999887763
No 30
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=3e-25 Score=189.57 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=125.4
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH-HhccccCCchH-------
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~------- 138 (283)
..++.+++|..+ |++++|+|+|||||||||++|+|+.++. |+|.+.+.|+...++.++. ..++||||...
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV 95 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTV 95 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcH
Confidence 568889999854 9999999999999999999999999986 9999999999988776654 46999999764
Q ss_pred -HHHHhCCCCCCChHHHHHHHHHHHHHcc-ccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC-------
Q 023354 139 -RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK------- 206 (283)
Q Consensus 139 -~~i~~~g~~~~~~~~~~~~~~~~l~~l~-~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~------- 206 (283)
+.+.++++.............+.++.|- ++...+..-+. ||||+|+++|||||+ +|.++++| |+.|..
T Consensus 96 eENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I 175 (237)
T COG0410 96 EENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 175 (237)
T ss_pred HHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHH
Confidence 2333444433220000000122333332 22333444444 999999999999998 59999999 998842
Q ss_pred ------chhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 207 ------IPRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 207 ------l~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+.++.+.+ +++||+.+++..|+++..|+..++...
T Consensus 176 ~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 176 FEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 22222222 378999999999999999988877664
No 31
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.92 E-value=2.3e-25 Score=223.26 Aligned_cols=187 Identities=17% Similarity=0.117 Sum_probs=143.3
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.+++|.|+++..+.+++++|..+ |++++|+|++|||||||+|+|+|++.|+ |+|.+++.++...+...+++.
T Consensus 449 ~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred CceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 45688999999998766788999999965 9999999999999999999999999998 999999999999999999999
Q ss_pred ccccCCchHH------HHHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIR------AVETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~------~i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
+|||+|++.. .+.+.+.+ .+ .+.+..+.+ .+.++ ....++|..+.| ||||+||+++||++. +
T Consensus 529 i~~v~Q~~~lf~gTI~eNi~~~~~-~~-~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 529 LGVVLQNGRLMSGSIFENIAGGAP-LT-LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred cEEEccCCccCcccHHHHHhcCCC-CC-HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999752 22223333 22 222222221 12222 123467777776 999999999999998 4
Q ss_pred CcEEEEe-CCCCCCchhh---------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPRK---------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~---------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|.++++| ||++.|...+ ...+ ++.||+|++++.|++.+.|+..+++.
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 7777777 9998654221 1111 37899999999999999998877653
No 32
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.92 E-value=3.7e-25 Score=222.57 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=143.3
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.+++|.|+....+.+++++|..+ |++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 45688999999998777788999999955 9999999999999999999999999998 999999999998898999999
Q ss_pred ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
+|||||++..+ +.+-+.+..+. +.+..+.+ .+.++. ...+++..+.| ||||+||+++||+++ +
T Consensus 555 i~~v~Q~~~lf~gTi~eNi~l~~~~~~~-~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 555 VAMVDQDIFLFEGTVRDNLTLWDPTIPD-ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred eeEEecCChhhhccHHHHhhCCCCCCCH-HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 99999997532 22223332222 22222111 122221 23467777776 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchhh---------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPRK---------GGP----------GITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~---------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|.++++| ||++.|...+ .+. .+..||+|++++.|++.+.|+..+++.
T Consensus 634 p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 634 PSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 7777777 9998653211 111 137799999999999999998877654
No 33
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.6e-25 Score=192.50 Aligned_cols=154 Identities=18% Similarity=0.098 Sum_probs=117.6
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (283)
..++.+++|... |++|+|+||+|||||||||+|+|+.+|+ |+|.+.+..+... ...++||||+..
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEEEeccCcccchhhHH
Confidence 568899999855 9999999999999999999999999998 9999999877322 246899999864
Q ss_pred HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch------
Q 023354 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP------ 208 (283)
Q Consensus 139 ~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~------ 208 (283)
+.+.++.... ....+..+.+.+.|+.+++....+.+..+ ||||+||++|||+|+ +|.|+|+| |.+..|..
T Consensus 91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq 170 (248)
T COG1116 91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ 170 (248)
T ss_pred hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHH
Confidence 2222322111 12223344677899999999888888888 999999999999999 59899988 88875421
Q ss_pred -------hhcCCc-----------ccccCEEEEEcCC
Q 023354 209 -------RKGGPG-----------ITQADLLVINKTD 227 (283)
Q Consensus 209 -------~~~~~~-----------i~~ad~ivi~K~g 227 (283)
.+...+ +..||+|+++..+
T Consensus 171 ~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 171 DELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 111122 3689999999884
No 34
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=5e-25 Score=217.20 Aligned_cols=185 Identities=17% Similarity=0.099 Sum_probs=138.9
Q ss_pred CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+.+.+.+++|.|+++ .+.+++++|.. +|++++|+||+|||||||+++|+|++ |+ |+|.+++.++...+...+++.+
T Consensus 348 ~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 348 VTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred ceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhhe
Confidence 357788888766654 56899999985 59999999999999999999999999 76 9999999999999999999999
Q ss_pred cccCCchH------HHHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-CC
Q 023354 131 GALPEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 131 g~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~ 194 (283)
+||+|++. ..+..-+.+..+. +.+..+.+ .+.++. ...++|..++| ||||+||++|||+++ +|
T Consensus 426 ~~v~Q~~~LF~~TI~eNI~~g~~~~~~-eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 426 SWVGQNPQLPHGTLRDNVLLGNPDASD-EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred EEecCCCcCCCcCHHHHhhcCCCCCCH-HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999975 2222334443332 22222111 223221 23577888877 999999999999998 57
Q ss_pred cEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354 195 IIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 195 ~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.|+++| ||++.|...+ ... .+..||+|++++.|++.+.|+..+.+.
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 777777 9998653211 111 237799999999999999998877664
No 35
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.92 E-value=7.8e-25 Score=219.69 Aligned_cols=189 Identities=21% Similarity=0.211 Sum_probs=143.6
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.+++|.|+....+.+++++|..+ |++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus 461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred cceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 45688999999998777778999999955 9999999999999999999999999998 999999999999999999999
Q ss_pred ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
++||+|++..+ +.+-+.+..+. +.+..+.+ .+.++ ....+++..+.| ||||+||+++||++. +
T Consensus 541 i~~v~Q~~~lf~~TI~eNi~~~~~~~~~-~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 541 IGYVPQDPRLFYGTLRDNIALGAPYADD-EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred cEEECCChhhhhhhHHHHHhCCCCCCCH-HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999997532 22233333322 22221111 12222 123467777766 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHhH
Q 023354 194 YIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
|.++++| ||++.|...+ .+. .+..||+|++++.|++.+.|+..+.+.+
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 7777777 9998653211 011 1378999999999999999988776543
No 36
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.5e-25 Score=204.19 Aligned_cols=171 Identities=17% Similarity=0.110 Sum_probs=129.7
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (283)
...+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+. .+.+||+||++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCHH
Confidence 35788899985 59999999999999999999999999998 9999999988765543 368999999863
Q ss_pred HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch------
Q 023354 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP------ 208 (283)
Q Consensus 139 ~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~------ 208 (283)
+.+.++.... ....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |+++.|..
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~ 174 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR 174 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2222221111 11122223556778888887777887777 999999999999999 58888888 99986532
Q ss_pred -------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 209 -------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 209 -------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
++.+.+ ..+||+|++++.|++.+.|++.+++..
T Consensus 175 ~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 175 LEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 111222 268999999999999999998887653
No 37
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.8e-25 Score=197.18 Aligned_cols=184 Identities=17% Similarity=0.127 Sum_probs=132.0
Q ss_pred cccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC--HHHHHHh
Q 023354 57 EPIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMR 129 (283)
Q Consensus 57 ~~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~--~~~~~~~ 129 (283)
..++++.|.... .+++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84 (287)
T ss_pred EEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhc
Confidence 344455554322 36899999985 59999999999999999999999999988 99999998876532 3456778
Q ss_pred ccccCCchH---------HHHHhCCCC-CCChHHHHHHHHHHHHHcccc--ccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 130 NGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 130 ig~v~q~~~---------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~--~~~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
+||+||++. +.+.++... .....+....+.+.++.+++. ...+..+.+ |+||+||++||++|+ +|.
T Consensus 85 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~ 164 (287)
T PRK13637 85 VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK 164 (287)
T ss_pred eEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 999999852 111111110 011122223456678887775 446666666 999999999999998 588
Q ss_pred EEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 196 IYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 196 l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++++| |+++.|.. .+.+.++ .+||+|++++.|++.+.|++.+.+.
T Consensus 165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 165 ILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 88888 99987532 1112221 6799999999999999888877664
No 38
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.92 E-value=7.8e-25 Score=203.16 Aligned_cols=172 Identities=16% Similarity=0.097 Sum_probs=129.8
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhccccCCchH----
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI---- 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~---- 138 (283)
..++++++|..+ |++++|+|||||||||||++|+|+++|+ |+|.+.+.++...++.++ ++.+||++|.+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 347889999855 9999999999999999999999999998 999999999887776665 568999999753
Q ss_pred ----HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch--
Q 023354 139 ----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-- 208 (283)
Q Consensus 139 ----~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-- 208 (283)
+.+.++.... ....+....+.+.++.+++....+..+.+ ||||+||++|||+|+ +|.++|+| |+++.|..
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1122211000 01112233556778888777667777777 999999999999998 58888877 99986532
Q ss_pred -----------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 209 -----------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 209 -----------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.+.+.+ ..+||+|++++.|++.+.|++.+.+.
T Consensus 166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 111222 26799999999999999888777654
No 39
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.92 E-value=6.9e-25 Score=199.83 Aligned_cols=183 Identities=20% Similarity=0.167 Sum_probs=132.8
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...++...|.. ..++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ...++.+||
T Consensus 8 i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig~ 84 (306)
T PRK13537 8 IDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGV 84 (306)
T ss_pred EEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEEE
Confidence 444555555542 358899999854 9999999999999999999999999998 99999998876533 356788999
Q ss_pred cCCchH--------HHHHh-CCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-
Q 023354 133 LPEERI--------RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID- 200 (283)
Q Consensus 133 v~q~~~--------~~i~~-~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD- 200 (283)
+||++. +.+.+ +........+....+.+.++.+.+....+..+.. |+||+||++||++++. |.++++|
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE 164 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 999853 12221 1111111122223445667777776667777777 9999999999999994 8888888
Q ss_pred CCCCCCchhh------------cCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 201 VSGGDKIPRK------------GGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 pt~g~~l~~~------------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|++|.|...+ .+.++ ++||+|++++.|++.+.|++.+...
T Consensus 165 Pt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999764311 12221 6799999999999999888766543
No 40
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-24 Score=203.89 Aligned_cols=186 Identities=19% Similarity=0.170 Sum_probs=146.1
Q ss_pred ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
....++++|.|+++..+++++.+|..+ ||+|+|+|++|||||||++.|+|.+.|+ |+|.+.+.++..+++..+++.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 468889999999999999999999965 9999999999999999999999999998 99999999999999999999999
Q ss_pred ccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcccc--ccCCCcccC-----CchHHHHHHHHHHhc-CCc
Q 023354 132 ALPEERIRA------VETGGCPHAAIREDISINLG--PLEELSNL--FKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 132 ~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~~~--~~~d~~i~e-----SgGq~q~~~ia~al~-~~~ 195 (283)
+++|.+..+ +..-+++..+..+.. .+.+ .|+++... ++++..+.| ||||+||++|||++. |..
T Consensus 416 vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~-~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap 494 (573)
T COG4987 416 VLTQRVHLFSGTLRDNLRLANPDASDEELW-AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP 494 (573)
T ss_pred hhccchHHHHHHHHHHHhhcCCCCCHHHHH-HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence 999987533 333455555443322 2222 34444333 366777777 999999999999998 455
Q ss_pred EEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354 196 IYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 196 l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++++| ||.|.|-..+ .++ .++.+|+|+++..|+++++|...+.+.
T Consensus 495 l~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 495 LWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred eEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 55555 9999763221 111 248899999999999999999887776
No 41
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.6e-24 Score=204.43 Aligned_cols=186 Identities=18% Similarity=0.145 Sum_probs=143.0
Q ss_pred CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
..+...+.++.|++.. +++.+.+|+.+ |+.++|+|++|||||||+++|+|+++|+ |+|.+++.+....++..+++.+
T Consensus 319 ~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 319 IEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred ceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 3344557788888877 88999999855 9999999999999999999999999987 9999999999999999999999
Q ss_pred cccCCchHHH------HHhCCCCCCChHHHHHHHH--HHHHHccc-cccCCCcccC-----CchHHHHHHHHHHhcC-Cc
Q 023354 131 GALPEERIRA------VETGGCPHAAIREDISINL--GPLEELSN-LFKADLLLCE-----SGGDNLAANFSRELAD-YI 195 (283)
Q Consensus 131 g~v~q~~~~~------i~~~g~~~~~~~~~~~~~~--~~l~~l~~-~~~~d~~i~e-----SgGq~q~~~ia~al~~-~~ 195 (283)
++|+|++..+ +.+-+.+..+. +.+..+. ..+.++.. ..+.|..+.| ||||+||+++||++.+ +.
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~-e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASD-EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCH-HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 9999998522 22223333322 2222222 23444433 3678999988 9999999999999996 56
Q ss_pred EEEEe-CCCCCCchhhc-----------CCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 196 IYIID-VSGGDKIPRKG-----------GPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 196 l~llD-pt~g~~l~~~~-----------~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++++| ||++.|...+. ..+ +..+|+|++++.|++++.|...+...
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 66666 99987754321 111 37899999999999999999887754
No 42
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2e-24 Score=194.34 Aligned_cols=186 Identities=13% Similarity=0.044 Sum_probs=135.6
Q ss_pred ccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 56 HEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 56 ~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
...++++.|.... ..++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||
T Consensus 6 ~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13650 6 EVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGM 85 (279)
T ss_pred EEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceE
Confidence 3445555554322 35889999985 59999999999999999999999999988 999999998876566667788999
Q ss_pred cCCchHH---------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 133 LPEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 133 v~q~~~~---------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
++|++.. .+.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++|+|
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD 165 (279)
T PRK13650 86 VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD 165 (279)
T ss_pred EEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9998621 111211111 11112223456678888777667777777 999999999999998 58888888
Q ss_pred -CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 201 -VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 201 -pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
|+++.|.. .+.+.+ +..||++++++.|++...|++.+.+..
T Consensus 166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99986532 111222 257999999999999988887776653
No 43
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.1e-24 Score=191.06 Aligned_cols=170 Identities=22% Similarity=0.179 Sum_probs=123.4
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhccccCCchH------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------ 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~------ 138 (283)
..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+. ..+++.++|++|++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT 93 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence 5788999985 59999999999999999999999999987 999999888765443 345677999999753
Q ss_pred --HHHHhCCCC--CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh--
Q 023354 139 --RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-- 209 (283)
Q Consensus 139 --~~i~~~g~~--~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-- 209 (283)
+.+.++... .....+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 112221111 111112223455677777776666777776 999999999999998 58888888 999875321
Q ss_pred -----------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 210 -----------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 210 -----------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+.+.++ .+||++++++.|++.+.|+..+.+
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 112221 579999999999998877765543
No 44
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=3.7e-25 Score=184.89 Aligned_cols=180 Identities=19% Similarity=0.161 Sum_probs=134.9
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH-hccccCCchHHHHHhC-
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERIRAVETG- 144 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~~~i~~~- 144 (283)
...+++++|.. +||+|+|+|||||||||.+.+++|+.+|+ |+|.+++.|+...+...+.+ .+||+||++..+-.+.
T Consensus 17 r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV 96 (243)
T COG1137 17 RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTV 96 (243)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcH
Confidence 45778888885 59999999999999999999999999998 99999999999887655544 6999999985332211
Q ss_pred -------CCCCC-ChH--HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc----
Q 023354 145 -------GCPHA-AIR--EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI---- 207 (283)
Q Consensus 145 -------g~~~~-~~~--~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l---- 207 (283)
..... ... +......+.|++|.+.+..+.+-.. |||+++|+.|||+|+ +|..+|+| |.+|-|.
T Consensus 97 ~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~ 176 (243)
T COG1137 97 EDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI 176 (243)
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHH
Confidence 11111 111 2222344678888877777666555 999999999999998 68888888 9998542
Q ss_pred --hh------hcC-----------CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcC
Q 023354 208 --PR------KGG-----------PGITQADLLVINKTDLASAIGADLAVMERDALRMRD 248 (283)
Q Consensus 208 --~~------~~~-----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~ 248 (283)
+. ..+ .++..||+..++..|.+.+.|++.+.+.....+..|
T Consensus 177 dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr~~Y 236 (243)
T COG1137 177 DIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVY 236 (243)
T ss_pred HHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhhhhc
Confidence 11 111 134899999999999999999999988865544443
No 45
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=212.26 Aligned_cols=189 Identities=16% Similarity=0.133 Sum_probs=141.5
Q ss_pred CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.+++|.|++...+.+++.++.. +|++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus 339 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred CCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 3568888999999876667899999985 59999999999999999999999999998 999999999988888889999
Q ss_pred ccccCCchHH------HHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIR------AVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~------~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
++|+||++.. .+.+-+.+.....+.+..+.+ .+.++. ...++|..+.| ||||+||+++||++. +
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 9999999742 222223222112222222221 122221 23567777766 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|.|+++| ||++.|...+ ...+ ++.||+|++++.|++.+.|+..+.+.
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 7777777 9998653211 1111 37899999999999999998877654
No 46
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-24 Score=200.99 Aligned_cols=182 Identities=18% Similarity=0.107 Sum_probs=130.1
Q ss_pred ccCCCCCCC--CCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HHHhc
Q 023354 58 PIYSPGYFS--RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRN 130 (283)
Q Consensus 58 ~~~~~~~~~--~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~~~i 130 (283)
.++++.|.. ....++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..+ +++.+
T Consensus 5 ~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i 84 (343)
T PRK11153 5 KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQI 84 (343)
T ss_pred EeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCE
Confidence 344555542 1345789999985 59999999999999999999999999987 99999998887655433 35679
Q ss_pred cccCCchH--------HHHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 131 GALPEERI--------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 131 g~v~q~~~--------~~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
||+||++. +.+.++.. ......+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++++
T Consensus 85 g~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlL 164 (343)
T PRK11153 85 GMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLC 164 (343)
T ss_pred EEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999753 11222110 0011112223455677777776666777777 999999999999998 5888888
Q ss_pred e-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 200 D-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 200 D-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
| |+++.|.. ++.+.++ .+||++++++.|++.+.|+..+.+
T Consensus 165 DEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 165 DEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 8 99997532 1112221 579999999999999888776654
No 47
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.91 E-value=1e-24 Score=202.16 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=133.1
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (283)
..+++..|.. ...+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+++.++....+. ++.+||+|
T Consensus 7 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~v~ 82 (353)
T TIGR03265 7 IDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVF 82 (353)
T ss_pred EEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEe
Confidence 3344444432 34688899985 49999999999999999999999999998 9999999888655443 46799999
Q ss_pred CchH--------HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354 135 EERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (283)
Q Consensus 135 q~~~--------~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt 202 (283)
|+.. +.+.++..... ...+....+.+.++.+++....++.+.+ ||||+||+++||+|+ +|.++++| |+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9853 12222211111 1112223566788888887777877777 999999999999998 58888888 99
Q ss_pred CCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 203 GGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 203 ~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.|.. ++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 986532 111222 26899999999999999999888775
No 48
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-24 Score=201.17 Aligned_cols=182 Identities=14% Similarity=0.070 Sum_probs=133.8
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...++...|.. ..++++++|..+ |++++|+|||||||||||++|+|+++|+ |+|.+++.++...++. ++.+||
T Consensus 7 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 82 (351)
T PRK11432 7 VVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICM 82 (351)
T ss_pred EEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 444455555532 347888999854 9999999999999999999999999998 9999999988755442 468999
Q ss_pred cCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 133 LPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 133 v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
+||+.. +.+.++.... ....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++++|
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDE 162 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDE 162 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 999853 2222221111 11122223556677777777777777777 999999999999998 58888888
Q ss_pred CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|.. ++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 163 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 163 PLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99986532 111222 26799999999999999999887765
No 49
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.91 E-value=2e-24 Score=200.21 Aligned_cols=169 Identities=17% Similarity=0.125 Sum_probs=128.3
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~ 139 (283)
..+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+++.++....+ .++.+||+||++. +
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYALFRHMTVFD 93 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcccCCCCcHHH
Confidence 4788999985 59999999999999999999999999988 999999988865433 3467999999853 2
Q ss_pred HHHhCCCC-----CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch---
Q 023354 140 AVETGGCP-----HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP--- 208 (283)
Q Consensus 140 ~i~~~g~~-----~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~--- 208 (283)
.+.++... .....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|.++++| |+++.|..
T Consensus 94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~ 173 (353)
T PRK10851 94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173 (353)
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 22232211 111122233566778888777777777777 999999999999998 58888888 99986532
Q ss_pred ----------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 209 ----------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 209 ----------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.+.+ ..+||+|++++.|++.+.|++.+.+.
T Consensus 174 ~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 174 ELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 111222 26799999999999999998888765
No 50
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.91 E-value=1.4e-24 Score=218.14 Aligned_cols=188 Identities=17% Similarity=0.173 Sum_probs=141.9
Q ss_pred CCccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354 52 APHSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM 128 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~ 128 (283)
.+.+.+.+++|.|++.. .+.+++++|..+ |++++|+||+|||||||+++|+|+++|+ |+|.+++.++.+.+...+++
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 46789999999998754 578999999955 9999999999999999999999999998 99999999999888899999
Q ss_pred hccccCCchH------HHHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-
Q 023354 129 RNGALPEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA- 192 (283)
Q Consensus 129 ~ig~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~- 192 (283)
.++|++|++. ..+.+.+.+.... +.+..+.+ .+.++. ...++|..+.| ||||+||++|||++.
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~-e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPD-EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCH-HHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999975 2222334443332 22222111 112221 23457777766 999999999999998
Q ss_pred CCcEEEEe-CCCCCCchh---------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 193 DYIIYIID-VSGGDKIPR---------KGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 193 ~~~l~llD-pt~g~~l~~---------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|.|+++| ||++.|... ..+.+ +..||+|++++.|++.+.|+..+.++
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 47777777 999865321 11111 37799999999999999999877654
No 51
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.91 E-value=4.3e-24 Score=194.30 Aligned_cols=170 Identities=21% Similarity=0.156 Sum_probs=125.1
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (283)
..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.+||+||++.
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 35788999985 59999999999999999999999999987 999999988754 33456678999999753
Q ss_pred HHHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354 139 RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----- 209 (283)
Q Consensus 139 ~~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----- 209 (283)
+.+.+... ......+....+.+.++.+++....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 164 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 11221110 0011111223455678888777667777777 999999999999998 48888888 999976421
Q ss_pred -------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 210 -------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 210 -------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+.+.++ .+||++++++.|++...|+..+..
T Consensus 165 ~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 165 DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 112221 579999999999999888776554
No 52
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3e-24 Score=194.29 Aligned_cols=184 Identities=16% Similarity=0.105 Sum_probs=130.6
Q ss_pred cccCCCCCCCCC---CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC----CCHHHHH
Q 023354 57 EPIYSPGYFSRR---APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFL 127 (283)
Q Consensus 57 ~~~~~~~~~~~~---~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~----~~~~~~~ 127 (283)
..++.+.|.... ..++++++|..+ |++++|+|+||||||||+++|+|+++|+ |+|.+++.++.. .....++
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLR 84 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 334445554322 358899999855 9999999999999999999999999987 999999988753 1234566
Q ss_pred HhccccCCchH---------HHHHhCCCCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354 128 MRNGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 128 ~~ig~v~q~~~---------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~ 194 (283)
+.+||+||++. +.+.++.... ....+....+.+.++.+++. ...+..+.+ |+||+||+.||++++ +|
T Consensus 85 ~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P 164 (290)
T PRK13634 85 KKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP 164 (290)
T ss_pred hhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 78999999852 1111211111 11122223455677787775 445666666 999999999999998 58
Q ss_pred cEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 195 IIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 195 ~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.++++| |+++.|.. .+.+.++ ++||+|++++.|++.+.|++.+.+.
T Consensus 165 ~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 888888 99986532 1112221 6799999999999999888777654
No 53
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5e-24 Score=191.32 Aligned_cols=181 Identities=15% Similarity=0.074 Sum_probs=131.0
Q ss_pred ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (283)
...++++.|+. ...++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||+
T Consensus 6 ~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 84 (274)
T PRK13647 6 EVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84 (274)
T ss_pred EEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEE
Confidence 34455555542 235889999984 59999999999999999999999999987 9999999888766666677789999
Q ss_pred CCchHH---------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 134 PEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 134 ~q~~~~---------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
+|++.. .+.++.... .........+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++++|
T Consensus 85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE 164 (274)
T PRK13647 85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE 164 (274)
T ss_pred ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 998621 111111000 01111122445677777776667777777 999999999999998 58888888
Q ss_pred CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHH
Q 023354 201 VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLA 237 (283)
Q Consensus 201 pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e 237 (283)
|+++.|... +.+.++ ++||++++++.|++.+.|++.+
T Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999875321 112221 6899999999999998887643
No 54
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.91 E-value=4e-24 Score=197.24 Aligned_cols=184 Identities=20% Similarity=0.166 Sum_probs=134.5
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.+...+.+..|.. ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....++.+|
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-ARLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-hHHHhccEE
Confidence 3556666666642 35899999985 49999999999999999999999999998 9999999887643 345667899
Q ss_pred ccCCchH--------HHHHh-CCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 132 ALPEERI--------RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 132 ~v~q~~~--------~~i~~-~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
|+||++. +.+.+ +........+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++++|
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD 197 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999753 12221 1111111122222344567777777667777777 999999999999999 58888888
Q ss_pred -CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 201 -VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 -pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|++|.|... +.+.++ .+||+|++++.|++.+.|++.+...
T Consensus 198 EPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 198 EPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999976421 112221 6899999999999999888776643
No 55
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.91 E-value=2.7e-24 Score=211.51 Aligned_cols=188 Identities=17% Similarity=0.157 Sum_probs=140.9
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.+++|.|++...+.+++++|..+ |++++|+||+|||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus 336 ~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 336 QVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 35688999999998765678999999855 9999999999999999999999999988 999999999999888899999
Q ss_pred ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHccc-cccCCCcccC-----CchHHHHHHHHHHhc-CC
Q 023354 130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELSN-LFKADLLLCE-----SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~~-~~~~d~~i~e-----SgGq~q~~~ia~al~-~~ 194 (283)
++|++|++..+ +...+++..+ .+.+..+.+ .+.++.. ..++|..+.| ||||+||+++||+++ +|
T Consensus 416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~-~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 416 ISVVSQRVHLFSATLRDNLLLAAPNAS-DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred eeEEcccchhhcccHHHHhhcCCCccC-HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999998522 1222333222 222221111 1222211 3467777766 999999999999998 57
Q ss_pred cEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354 195 IIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 195 ~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.++++| ||++.|...+ .+. .+..||+|++++.|++.+.|+..+.+.
T Consensus 495 ~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 495 PLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 777777 9998653211 011 136799999999999999998876654
No 56
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.91 E-value=2.8e-24 Score=216.18 Aligned_cols=188 Identities=15% Similarity=0.121 Sum_probs=141.1
Q ss_pred CCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354 51 LAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM 128 (283)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~ 128 (283)
..+.+.+.+++|.|+. ..+.+++++|..+ |++++|+|++|||||||+++|+|++.|+ |+|.+++.++...+...+++
T Consensus 470 ~~~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 470 LNGDIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred CCCcEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHH
Confidence 3456888999999964 3568999999955 9999999999999999999999999998 99999999999999999999
Q ss_pred hccccCCchHH-------HHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354 129 RNGALPEERIR-------AVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA 192 (283)
Q Consensus 129 ~ig~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~ 192 (283)
.+|||||++.. .+.++..+..+. +.+..+.+ .+.++. ...++|..+.| ||||+||++|||+++
T Consensus 549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~-~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall 627 (708)
T TIGR01193 549 FINYLPQEPYIFSGSILENLLLGAKENVSQ-DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL 627 (708)
T ss_pred heEEEecCceehhHHHHHHHhccCCCCCCH-HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999752 222332233322 22222111 122221 23467777776 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchhh---------c-CCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 193 -DYIIYIID-VSGGDKIPRK---------G-GPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~---------~-~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|.++++| ||++.|...+ . +.+ +..||+|++++.|++.+.|+..+.+.
T Consensus 628 ~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 628 TDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 57777777 9998653211 1 111 37899999999999999998877654
No 57
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=4.8e-24 Score=189.10 Aligned_cols=172 Identities=19% Similarity=0.139 Sum_probs=135.8
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhccccCCchH-----
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI----- 138 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~----- 138 (283)
..+++.+|..+ |++++|+|-+|||||||+++|.+++.|+ |+|.+.+.|+...+..++ ++++++|||..-
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 45778888865 9999999999999999999999999998 999999999998887654 346999999753
Q ss_pred ---HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC-----
Q 023354 139 ---RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK----- 206 (283)
Q Consensus 139 ---~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~----- 206 (283)
+.+.+|..... ...+..+.+.++|+.+++....+.++.| ||||+||+.+||||+ +|.|+|+| |.+.+|
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 12223322111 1234445778899999999888888888 999999999999999 58888888 887643
Q ss_pred --------chhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 207 --------IPRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 207 --------l~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
++.+...+ ++..|+|.++|.|.+++.|++.+.+..
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcC
Confidence 23333333 378999999999999999999988763
No 58
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.91 E-value=1.8e-24 Score=201.83 Aligned_cols=204 Identities=18% Similarity=0.175 Sum_probs=153.1
Q ss_pred CCCCcccCCCCCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354 40 SDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (283)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d 117 (283)
|........+...|+.......+.-|...++.+++++|... |+.++|+||+|||||||.|+|.|..+|. |.|.+++.+
T Consensus 320 p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~ 399 (580)
T COG4618 320 PAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGAD 399 (580)
T ss_pred ccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchh
Confidence 44455566777788877777777777788899999999955 9999999999999999999999999998 999999999
Q ss_pred CCCCCHHHHHHhccccCCchHHHHH-----hCCCC-CCChHHHHH-HHHHHHHHc--cccccCCCcccC-----CchHHH
Q 023354 118 IFTKEDGEFLMRNGALPEERIRAVE-----TGGCP-HAAIREDIS-INLGPLEEL--SNLFKADLLLCE-----SGGDNL 183 (283)
Q Consensus 118 ~~~~~~~~~~~~ig~v~q~~~~~i~-----~~g~~-~~~~~~~~~-~~~~~l~~l--~~~~~~d~~i~e-----SgGq~q 183 (283)
+.+++..++-+.|||+||+...+-- ...+. ..+....++ .......++ ....+||..+++ ||||||
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 9999999999999999998532211 11111 111111111 111223333 245689999988 999999
Q ss_pred HHHHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCC---------cccccCEEEEEcCCcccccCChHHHH
Q 023354 184 AANFSRELA-DYIIYIID-VSGGDKIP-------------RKGGP---------GITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 184 ~~~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~---------~i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
|+.+||++. +|.++++| |.+..|-. .+... .+..+|+|++++.|.+...|+..+++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 999999998 69999998 77664421 11111 13789999999999999999998887
Q ss_pred hHHH
Q 023354 240 ERDA 243 (283)
Q Consensus 240 ~~~~ 243 (283)
.+..
T Consensus 560 a~~~ 563 (580)
T COG4618 560 AKVL 563 (580)
T ss_pred HHhc
Confidence 6543
No 59
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.9e-24 Score=188.92 Aligned_cols=170 Identities=20% Similarity=0.156 Sum_probs=122.4
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC---HHHHHHhccccCCchH-----
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI----- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~---~~~~~~~ig~v~q~~~----- 138 (283)
...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.++|++|++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 35788999984 59999999999999999999999999887 99999988876544 2345677999999753
Q ss_pred ---HHHHhCCCCC---------CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354 139 ---RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (283)
Q Consensus 139 ---~~i~~~g~~~---------~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~ 203 (283)
+.+.++.... .........+.+.++.++.....+..+.+ |+||+||++||++++ +|.|+++| |++
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 1111111100 00011223445667777766666666666 999999999999998 58888888 999
Q ss_pred CCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 204 GDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 204 g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+.|.. .+.+.++ .+||++++++.|++...|+..+.
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 86532 1112221 58999999999999888776654
No 60
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.1e-24 Score=194.58 Aligned_cols=185 Identities=15% Similarity=0.079 Sum_probs=130.8
Q ss_pred cccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC-----------
Q 023354 57 EPIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----------- 120 (283)
Q Consensus 57 ~~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~----------- 120 (283)
..++.+.|.... ..++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+...
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVL 84 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccc
Confidence 344455554332 25789999985 59999999999999999999999999987 999998665421
Q ss_pred -------------CCHHHHHHhccccCCchH---------HHHHhCCCCCC-ChHHHHHHHHHHHHHcccc-ccCCCccc
Q 023354 121 -------------KEDGEFLMRNGALPEERI---------RAVETGGCPHA-AIREDISINLGPLEELSNL-FKADLLLC 176 (283)
Q Consensus 121 -------------~~~~~~~~~ig~v~q~~~---------~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~-~~~d~~i~ 176 (283)
.....+++.+||+||++. +.+.++..... ...+....+.+.++.+++. ...+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 164 (305)
T PRK13651 85 EKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPF 164 (305)
T ss_pred cccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence 123456778999999752 11222211111 1112233556778888775 45666666
Q ss_pred C-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCccc
Q 023354 177 E-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLAS 230 (283)
Q Consensus 177 e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~ 230 (283)
+ |+||+||++||++++ +|.++++| |+++.|... +.+.+ .++||+|++++.|+++
T Consensus 165 ~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~ 244 (305)
T PRK13651 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII 244 (305)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEE
Confidence 6 999999999999998 58888888 999865321 11222 1689999999999999
Q ss_pred ccCChHHHHhH
Q 023354 231 AIGADLAVMER 241 (283)
Q Consensus 231 ~~g~~~e~~~~ 241 (283)
+.|++.+.+..
T Consensus 245 ~~g~~~~~~~~ 255 (305)
T PRK13651 245 KDGDTYDILSD 255 (305)
T ss_pred EECCHHHHhcC
Confidence 98888776653
No 61
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.4e-24 Score=192.25 Aligned_cols=184 Identities=17% Similarity=0.086 Sum_probs=130.3
Q ss_pred ccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC----CHHHHHH
Q 023354 58 PIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLM 128 (283)
Q Consensus 58 ~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~----~~~~~~~ 128 (283)
.++++.|.... .+++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+++.++... ....+++
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (286)
T PRK13646 6 DNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRK 85 (286)
T ss_pred EEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh
Confidence 34445554322 35899999985 59999999999999999999999999988 9999999887542 2345677
Q ss_pred hccccCCchH---------HHHHhCCCC-CCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 129 RNGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 129 ~ig~v~q~~~---------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
.+||+||++. +.+.++... .....+....+.+.++.+++. ...+..+.+ |+||+||++||++|+ +|.
T Consensus 86 ~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~ 165 (286)
T PRK13646 86 RIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPD 165 (286)
T ss_pred heEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 8999999752 111111101 011112223455677777764 445566666 999999999999998 588
Q ss_pred EEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHhH
Q 023354 196 IYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 196 l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
++++| |+++.|.. .+.+.++ ++||++++++.|++.+.|++.+.+..
T Consensus 166 illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 166 IIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 88888 99986532 1112221 67999999999999998888776653
No 62
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.5e-24 Score=191.08 Aligned_cols=186 Identities=16% Similarity=0.057 Sum_probs=134.9
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...++.+.|......++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM 85 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEE
Confidence 3445556666544446889999985 59999999999999999999999999988 999999998876655666778999
Q ss_pred cCCchH-H--------HHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 133 LPEERI-R--------AVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 133 v~q~~~-~--------~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
++|++. . .+.++..... ...+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.|+++|
T Consensus 86 ~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 165 (279)
T PRK13635 86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD 165 (279)
T ss_pred EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999862 1 1111111111 1122223456677777776666776767 999999999999998 58888888
Q ss_pred -CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 -VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 -pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|.. .+.+.+ +..||++++++.|++.+.|+..+.+.
T Consensus 166 EPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 166 EATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99997532 111222 25699999999999998887766554
No 63
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.4e-24 Score=195.01 Aligned_cols=188 Identities=14% Similarity=0.051 Sum_probs=135.1
Q ss_pred CccccccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC------
Q 023354 53 PHSHEPIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK------ 121 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~------ 121 (283)
..+.+.++++.|.... .+++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3467778888876432 35899999985 59999999999999999999999999987 9999998776532
Q ss_pred ----------CHHHHHHhccccCCchH---------HHHHhCCCC-CCChHHHHHHHHHHHHHcccc-ccCCCcccC-Cc
Q 023354 122 ----------EDGEFLMRNGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SG 179 (283)
Q Consensus 122 ----------~~~~~~~~ig~v~q~~~---------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-Sg 179 (283)
....+++.+||++|++. +.+.++... .....+....+.+.++.+++. ...+..+.+ |+
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg 179 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG 179 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCH
Confidence 23456778999999862 111222111 111122223455677777764 345655556 99
Q ss_pred hHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCC
Q 023354 180 GDNLAANFSRELA-DYIIYIID-VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 180 Gq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~ 234 (283)
||+||++|||+|+ +|.++|+| |+++.|... +.+.+ .++||+|++++.|++...|+
T Consensus 180 GqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~ 259 (320)
T PRK13631 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999998 58888877 999875321 11222 16799999999999999998
Q ss_pred hHHHHh
Q 023354 235 DLAVME 240 (283)
Q Consensus 235 ~~e~~~ 240 (283)
+.+.+.
T Consensus 260 ~~~~~~ 265 (320)
T PRK13631 260 PYEIFT 265 (320)
T ss_pred HHHHhc
Confidence 877654
No 64
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.91 E-value=1.6e-23 Score=184.43 Aligned_cols=180 Identities=22% Similarity=0.158 Sum_probs=126.8
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhccc
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGA 132 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ig~ 132 (283)
.++...|.. ....+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|
T Consensus 5 ~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 83 (243)
T TIGR02315 5 ENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83 (243)
T ss_pred EeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEE
Confidence 344555541 245789999985 59999999999999999999999999987 999998887765433 235677999
Q ss_pred cCCchHH--------HHHhCCCCC---------CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354 133 LPEERIR--------AVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 133 v~q~~~~--------~i~~~g~~~---------~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~ 193 (283)
++|++.. .+.++.... ....+....+.+.++.++.....+..+.+ |+||+||++||++++ +
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 163 (243)
T TIGR02315 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQ 163 (243)
T ss_pred EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9998531 111211100 00112223455667777766666666666 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 194 YIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
|.++++| |+++.|.. .+.+.++ ++||++++++.|++...|++.+.
T Consensus 164 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 164 PDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 8888888 99986532 1112221 67999999999999887776654
No 65
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.4e-24 Score=192.41 Aligned_cols=184 Identities=16% Similarity=0.128 Sum_probs=130.6
Q ss_pred cccCCCCCCCCC---CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC----CCHHHHH
Q 023354 57 EPIYSPGYFSRR---APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFL 127 (283)
Q Consensus 57 ~~~~~~~~~~~~---~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~----~~~~~~~ 127 (283)
+.++++.|.... .+++++++|... |++++|+|+||||||||+++|+|+++|+ |+|.+++.++.. ....+++
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 83 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR 83 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHH
Confidence 445556665332 258899999854 9999999999999999999999999987 999999988742 2245567
Q ss_pred HhccccCCchH---------HHHHhCCCCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354 128 MRNGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 128 ~~ig~v~q~~~---------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~ 194 (283)
+.+||++|++. +.+.++.... ....+....+.+.++.+++. ...+..+.+ |+||+||++||++++ +|
T Consensus 84 ~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p 163 (288)
T PRK13643 84 KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEP 163 (288)
T ss_pred hhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCC
Confidence 88999999752 1111111000 01111222455667777664 344666666 999999999999998 58
Q ss_pred cEEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 195 IIYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 195 ~l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.++|+| |+++.|... +.+.++ ++||+|++++.|++.+.|++.+.+.
T Consensus 164 ~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 888888 999875321 112221 6799999999999999998887765
No 66
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.91 E-value=4.1e-24 Score=199.35 Aligned_cols=183 Identities=16% Similarity=0.099 Sum_probs=133.5
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+....|.. ...+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+. .+.+||
T Consensus 15 L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 90 (375)
T PRK09452 15 VELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNT 90 (375)
T ss_pred EEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 444555555532 34688888885 59999999999999999999999999997 9999999988765543 367999
Q ss_pred cCCchH--------HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 133 LPEERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 133 v~q~~~--------~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
+||+.. +.+.++..... ...+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+|
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE 170 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999863 12222211111 1111223455677777777777777777 999999999999998 58888888
Q ss_pred CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 201 VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 201 pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
|+++.|.. ++.+.+ ..+||+|++++.|++.+.|++.+++..
T Consensus 171 P~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99986532 111222 268999999999999999988887653
No 67
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=8.7e-24 Score=190.05 Aligned_cols=182 Identities=16% Similarity=0.126 Sum_probs=131.1
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
.++...|... ..++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||++|
T Consensus 7 ~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 85 (277)
T PRK13652 7 RDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQ 85 (277)
T ss_pred EEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEec
Confidence 4445555432 34789999985 59999999999999999999999999988 999999988765555567778999999
Q ss_pred chH---------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354 136 ERI---------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (283)
Q Consensus 136 ~~~---------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt 202 (283)
++. +.+.++.... .........+.+.++.+++....+..+.+ |+||+||+.+|++++ +|.++++| |+
T Consensus 86 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt 165 (277)
T PRK13652 86 NPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT 165 (277)
T ss_pred CcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 852 1111111000 11111122345677777776666777777 999999999999998 58888888 99
Q ss_pred CCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 203 GGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 203 ~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.|.. .+.+.++ +.||++++++.|++.+.|++.+.+.
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 166 AGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 987532 1112221 6799999999999999888877664
No 68
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=189.94 Aligned_cols=185 Identities=16% Similarity=0.054 Sum_probs=134.7
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRN 130 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~i 130 (283)
+.+.++++.|.. ....+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. .....+++.+
T Consensus 6 l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 6 LKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred EEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 455666666642 245889999985 59999999999999999999999999987 999999988742 2344567789
Q ss_pred cccCCchHH---------HHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354 131 GALPEERIR---------AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (283)
Q Consensus 131 g~v~q~~~~---------~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l 198 (283)
||+||++.. .+.++... .....+....+...++.+++....+..+.+ |+||+||+.||++|+ +|.+++
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLi 164 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV 164 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999998621 11111100 011122223455677888777667777777 999999999999998 588888
Q ss_pred Ee-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 199 ID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 199 lD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+| |+++.|... +.+.++ .+||++++++.|++.+.|+..+.+.
T Consensus 165 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 165 LDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 88 999875321 112221 5799999999999999888877665
No 69
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.6e-23 Score=188.74 Aligned_cols=186 Identities=18% Similarity=0.121 Sum_probs=134.1
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC----CcEEEEeecCCCCCHHHHHHh
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~----g~i~i~~~d~~~~~~~~~~~~ 129 (283)
+...+..+.|.....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.
T Consensus 6 l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ 85 (282)
T PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREK 85 (282)
T ss_pred EEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhh
Confidence 4455566666544445889999985 59999999999999999999999999875 799999988865555566778
Q ss_pred ccccCCchHH---------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354 130 NGALPEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (283)
Q Consensus 130 ig~v~q~~~~---------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ 197 (283)
+||++|++.. .+.++.... ....+....+.+.++.+++....+..+.. |+||+||+.||++++ +|.++
T Consensus 86 ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ll 165 (282)
T PRK13640 86 VGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII 165 (282)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998631 111111001 11112223455677777776666766666 999999999999998 58888
Q ss_pred EEe-CCCCCCchh-------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 198 IID-VSGGDKIPR-------------KGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 198 llD-pt~g~~l~~-------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++| |+++.|... +.+.+ +..||++++++.|++.+.|++.+.+.
T Consensus 166 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 166 ILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 887 999865321 11222 25799999999999999888777655
No 70
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.90 E-value=6.1e-24 Score=184.44 Aligned_cols=177 Identities=18% Similarity=0.079 Sum_probs=123.3
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
++...|.......+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|+
T Consensus 5 ~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~ 83 (220)
T cd03263 5 NLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQF 83 (220)
T ss_pred eeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCc
Confidence 344445432245789999985 59999999999999999999999999987 9999988876543 34556779999997
Q ss_pred hHHH--------HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 137 RIRA--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 137 ~~~~--------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
+..+ +.+..... ....+....+.+.++.+.+....+..+.+ |+||+||++||++++ +|.++++| |+++
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~ 163 (220)
T cd03263 84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163 (220)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 5311 11111000 01111122345567777666656666666 999999999999998 58888888 9998
Q ss_pred CCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChH
Q 023354 205 DKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADL 236 (283)
Q Consensus 205 ~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~ 236 (283)
.|.... ...+ ..+||++++++.|++...|++.
T Consensus 164 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 217 (220)
T cd03263 164 LDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ 217 (220)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 764211 0111 1579999999999998876654
No 71
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.90 E-value=7.6e-24 Score=192.78 Aligned_cols=181 Identities=20% Similarity=0.182 Sum_probs=128.2
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (283)
..+++..|.. ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....++.+||+|
T Consensus 7 ~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~ 83 (303)
T TIGR01288 7 LVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVP 83 (303)
T ss_pred EEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEe
Confidence 3444445532 35789999985 49999999999999999999999999987 9999998877543 345567899999
Q ss_pred CchH--------HHHHh-CCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354 135 EERI--------RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (283)
Q Consensus 135 q~~~--------~~i~~-~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt 202 (283)
|++. +.+.+ .........+....+.+.++.+.+....+..+.+ |+||+||+.||++++ +|.++++| |+
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9753 11111 1111111111122344567777766666777777 999999999999998 48888888 99
Q ss_pred CCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 203 GGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 203 ~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.|... +.+.++ .+||++++++.|++...|++.+.+.
T Consensus 164 ~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 164 TGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9976421 112221 5799999999999998887766543
No 72
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.90 E-value=6.2e-24 Score=183.96 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=106.2
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhcccc
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGAL 133 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v 133 (283)
++++.|.......+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|+
T Consensus 6 ~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~ 85 (216)
T TIGR00960 6 QVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMV 85 (216)
T ss_pred EEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEE
Confidence 344445433335788999985 59999999999999999999999999987 9999998877544332 356789999
Q ss_pred CCchHHH--------HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354 134 PEERIRA--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (283)
Q Consensus 134 ~q~~~~~--------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p 201 (283)
+|++..+ +.++.... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 86 FQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred ecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9985311 11110000 01111223455677777776666666666 999999999999998 58888888 9
Q ss_pred CCCCCc
Q 023354 202 SGGDKI 207 (283)
Q Consensus 202 t~g~~l 207 (283)
+++.|.
T Consensus 166 t~~LD~ 171 (216)
T TIGR00960 166 TGNLDP 171 (216)
T ss_pred CCcCCH
Confidence 999764
No 73
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-23 Score=186.76 Aligned_cols=186 Identities=17% Similarity=0.103 Sum_probs=133.2
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+..+.|.......+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 87 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI 87 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence 4555666666544345788999985 59999999999999999999999999987 999999988766555667778999
Q ss_pred cCCchHH---------HHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 133 LPEERIR---------AVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 133 v~q~~~~---------~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
++|++.. .+.++..... ........+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++|
T Consensus 88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 167 (269)
T PRK13648 88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD 167 (269)
T ss_pred EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9998631 1111111011 1111122345567777766666666666 999999999999998 58888887
Q ss_pred -CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 -VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 -pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|.. .+.+.+ +..||++++++.|++.+.|++.+.+.
T Consensus 168 EPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 168 EATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99986532 111222 13599999999999998888766655
No 74
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.9e-23 Score=187.28 Aligned_cols=187 Identities=16% Similarity=0.066 Sum_probs=133.5
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.+...+..+.|.....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 34555666666544456889999985 59999999999999999999999999987 99999998886555556677899
Q ss_pred ccCCchH-HH--------HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 132 ALPEERI-RA--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 132 ~v~q~~~-~~--------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
|++|++. .+ +.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++++
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 166 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF 166 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999862 11 11110000 11111122345667777766666776766 999999999999998 5778777
Q ss_pred e-CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 200 D-VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 200 D-pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
| |+++.|.. .+...+ +..||++++++.|++...|+..+.+.
T Consensus 167 DEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 167 DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 7 99986532 111122 25799999999999988777766554
No 75
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.90 E-value=2.5e-23 Score=185.23 Aligned_cols=182 Identities=21% Similarity=0.214 Sum_probs=130.0
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
+....|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|+
T Consensus 7 ~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (258)
T PRK13548 7 NLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQH 84 (258)
T ss_pred eEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccC
Confidence 34444432 35788999985 59999999999999999999999999987 9999998877655555666789999997
Q ss_pred hH--------HHHHhCCCCCCC-hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-------CCcEEEE
Q 023354 137 RI--------RAVETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYIIYII 199 (283)
Q Consensus 137 ~~--------~~i~~~g~~~~~-~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-------~~~l~ll 199 (283)
+. +.+.++...... .......+.+.++.++.....+..+.+ |+||+||++||++++ +|.++++
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllL 164 (258)
T PRK13548 85 SSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLL 164 (258)
T ss_pred CcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 53 112222111111 111222345667777766666777777 999999999999998 6888888
Q ss_pred e-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHH
Q 023354 200 D-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMERD 242 (283)
Q Consensus 200 D-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~ 242 (283)
| |+++.|... +.+.++ .+||++++++.|.+...|+..+.+...
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 232 (258)
T PRK13548 165 DEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE 232 (258)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhChH
Confidence 8 999865321 112221 589999999999998888777666543
No 76
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.90 E-value=6.5e-24 Score=197.28 Aligned_cols=183 Identities=17% Similarity=0.089 Sum_probs=133.8
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-C--CcEEEEeecCCCCCHHHHHHhc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-K--YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~--g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+...+++..|.. ..++++++|.. +|++++|+|||||||||||++|+|+++| . |+|.+.+.++....+ ..+.+
T Consensus 6 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~i 81 (362)
T TIGR03258 6 IRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGL 81 (362)
T ss_pred EEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCE
Confidence 344455555532 35789999985 5999999999999999999999999987 5 999999988765443 34679
Q ss_pred cccCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 131 GALPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 131 g~v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
||++|++. +.+.++.... ....+....+.+.++.+++....++.+.+ |+||+||+++||+|+ +|.++|+
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999863 1122221111 11112223456678888887777888877 999999999999999 5888888
Q ss_pred e-CCCCCCch-------------hhc-CCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 200 D-VSGGDKIP-------------RKG-GPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 200 D-pt~g~~l~-------------~~~-~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
| |+++.|.. ++. +.+ ..+||+|++++.|++.+.|++.+++..
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 8 99986532 221 222 167999999999999999998887754
No 77
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8.6e-24 Score=189.81 Aligned_cols=182 Identities=18% Similarity=0.083 Sum_probs=130.4
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-HHHHHHhccccCC
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPE 135 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q 135 (283)
++.+.|.. ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.+||++|
T Consensus 6 ~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 84 (274)
T PRK13644 6 NVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQ 84 (274)
T ss_pred EEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEE
Confidence 33444432 234889999985 59999999999999999999999999987 99999998876543 3456678999999
Q ss_pred chHH-H--------HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354 136 ERIR-A--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (283)
Q Consensus 136 ~~~~-~--------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt 202 (283)
++.. + +.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.|+++| |+
T Consensus 85 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 85 NPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred ChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 8531 1 11111111 11112223455667777776667777777 999999999999998 58888888 99
Q ss_pred CCCCchh------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 203 GGDKIPR------------KGGPG----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 203 ~g~~l~~------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
++.|... ..+.+ +..||++++++.|++.+.|+..+.+..
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9875321 11222 256999999999999988887766543
No 78
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.9e-23 Score=182.97 Aligned_cols=181 Identities=18% Similarity=0.098 Sum_probs=126.4
Q ss_pred ccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhc
Q 023354 58 PIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRN 130 (283)
Q Consensus 58 ~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~i 130 (283)
.+..+.|... ..+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... ..++.+
T Consensus 5 ~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 84 (233)
T cd03258 5 KNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRI 84 (233)
T ss_pred ecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 3444455432 125788999985 59999999999999999999999999987 9999999887655433 335679
Q ss_pred cccCCchHH--------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 131 GALPEERIR--------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 131 g~v~q~~~~--------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
+|++|++.. .+.++.... .........+.+.++.++.....+..+.+ |+||+||++||++++ +|.++++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllL 164 (233)
T cd03258 85 GMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLC 164 (233)
T ss_pred EEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999998531 111110000 01111222445677777776666666666 999999999999998 5888888
Q ss_pred e-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 200 D-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 200 D-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
| |+++.|... +.+.++ .+||++++++.|++.+.++..+.
T Consensus 165 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 165 DEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 8 999875321 112221 57999999999999887765443
No 79
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.90 E-value=1.3e-23 Score=193.25 Aligned_cols=172 Identities=16% Similarity=0.160 Sum_probs=125.7
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchH-----
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI----- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~----- 138 (283)
..++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++.
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 35788999985 49999999999999999999999999987 9999999988765543 34567999999862
Q ss_pred -----HHHHhCC--C-CCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 139 -----RAVETGG--C-PHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 139 -----~~i~~~g--~-~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
+.+..+. . ......+....+.+.|+.+++. ...+..+.+ ||||+||+.||++++ +|.++|+| |++++|
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 1111110 0 0111122223455677777663 345666666 999999999999998 58888888 999876
Q ss_pred ch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 207 IP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 207 l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.. ++.+.++ .+||+|++++.|++++.|+..+++.
T Consensus 194 ~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~ 251 (331)
T PRK15079 194 VSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYH 251 (331)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 32 1112221 5799999999999999888777654
No 80
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.9e-24 Score=197.84 Aligned_cols=179 Identities=17% Similarity=0.088 Sum_probs=129.8
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
.+....|.. ...+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+. .+.+||++|
T Consensus 7 ~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~~v~Q 82 (369)
T PRK11000 7 RNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQ 82 (369)
T ss_pred EEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEEEEeC
Confidence 344444432 34788899985 59999999999999999999999999987 9999999887654432 367999999
Q ss_pred chH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354 136 ERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (283)
Q Consensus 136 ~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~ 203 (283)
++. +.+.++.... ....+....+.+.++.+++....++.+.+ |+||+||++|||+|+ +|.++|+| |++
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 853 1222221101 11122223456678888777777777777 999999999999999 58888888 999
Q ss_pred CCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 204 GDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 204 g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.|... +.+.+ ..+||++++++.|++.+.|++.+.+.
T Consensus 163 ~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 865321 11222 16799999999999999888877764
No 81
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.2e-24 Score=197.21 Aligned_cols=197 Identities=18% Similarity=0.200 Sum_probs=149.2
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC
Q 023354 44 VYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK 121 (283)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~ 121 (283)
.+....-..|.+.+.+++|+|.++ ++.+.+++|... |.+++|+||+|+||||++++|.+.+.-+ |.|.+++.|+...
T Consensus 527 ~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 527 GAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV 605 (790)
T ss_pred CCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHH
Confidence 344444567889999999998764 478899999855 9999999999999999999999999865 9999999999988
Q ss_pred CHHHHHHhccccCCchHHHHHhC------CCCCCChHHHHHHHH-HHHHH--ccccccCCCcccC-----CchHHHHHHH
Q 023354 122 EDGEFLMRNGALPEERIRAVETG------GCPHAAIREDISINL-GPLEE--LSNLFKADLLLCE-----SGGDNLAANF 187 (283)
Q Consensus 122 ~~~~~~~~ig~v~q~~~~~i~~~------g~~~~~~~~~~~~~~-~~l~~--l~~~~~~d~~i~e-----SgGq~q~~~i 187 (283)
....+|..||+|||+...++++- +.+..+..+-.+.+. ..+.+ +...+++...++| |||+|||++|
T Consensus 606 t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 606 TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAI 685 (790)
T ss_pred HHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHH
Confidence 88889999999999987665543 233333322222111 11221 2335677777887 9999999999
Q ss_pred HHHhc-CCcEEEEe-CCCCCCchhhc---------------------CCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354 188 SRELA-DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 188 a~al~-~~~l~llD-pt~g~~l~~~~---------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
||.+. +|.++++| +|+..|.+.+. ..++-.||.|++++.|.+++.|..++.+.+
T Consensus 686 ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 686 ARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 99988 58888888 77776543211 123468999999999999999988776653
No 82
>PLN03130 ABC transporter C family member; Provisional
Probab=99.90 E-value=6.6e-24 Score=227.75 Aligned_cols=187 Identities=16% Similarity=0.142 Sum_probs=143.6
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.|.+.+.++++.|.++..+++++++|..+ |++|||+|++|||||||+++|+|++.|+ |+|.+++.|+.+.+..++|++
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 46799999999998766679999999965 9999999999999999999999999988 999999999999999999999
Q ss_pred ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
+++|||++..+ +...+.. .+ .+++..+.+ .+.++. ...++|..+.| |+||+||++||||++ +
T Consensus 1315 IsiVpQdp~LF~GTIreNLd~~~~-~t-deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1315 LGIIPQAPVLFSGTVRFNLDPFNE-HN-DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred cEEECCCCccccccHHHHhCcCCC-CC-HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 99999998532 2112211 11 222222111 122221 23477888876 999999999999998 4
Q ss_pred CcEEEEe-CCCCCCchh----------hc-C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPR----------KG-G----------PGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~----------~~-~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.|+++| ||+..|... .. . .++..||+|++++.|++.+.|++.+++.
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 7777777 888765321 11 1 1246799999999999999999988775
No 83
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.4e-23 Score=189.66 Aligned_cols=183 Identities=16% Similarity=0.093 Sum_probs=129.4
Q ss_pred ccCCCCCCCC---CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC----CHHHHHH
Q 023354 58 PIYSPGYFSR---RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLM 128 (283)
Q Consensus 58 ~~~~~~~~~~---~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~----~~~~~~~ 128 (283)
.+++..|... ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....+++
T Consensus 6 ~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 85 (287)
T PRK13641 6 ENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRK 85 (287)
T ss_pred EEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh
Confidence 3444555422 135889999985 49999999999999999999999999998 9999999887532 2345566
Q ss_pred hccccCCchH---------HHHHhCCCCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 129 RNGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 129 ~ig~v~q~~~---------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
.+||++|++. +.+.++.... ....+....+.+.++.+++. ...+..+.+ |+||+||++||++++ +|.
T Consensus 86 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~ 165 (287)
T PRK13641 86 KVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPE 165 (287)
T ss_pred ceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7999999852 1111111001 11112223455677777765 455677777 999999999999998 588
Q ss_pred EEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 196 IYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 196 l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++++| |+++.|... +.+.++ .+||++++++.|++.+.|+..+.+.
T Consensus 166 lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 166 ILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 88888 999976421 112221 6899999999999998888776654
No 84
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.1e-23 Score=181.98 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=114.7
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------ 140 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------ 140 (283)
...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... .++.++|++|++..+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhhccCCcHH
Confidence 35788999985 59999999999999999999999999987 999998887764332 345799999986311
Q ss_pred --HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354 141 --VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----- 209 (283)
Q Consensus 141 --i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----- 209 (283)
+.++.... .........+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~ 170 (213)
T cd03259 91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170 (213)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 11111000 01111122345667777766666666666 999999999999998 58888888 999976421
Q ss_pred --------hcCCcc-----------cccCEEEEEcCCccccc
Q 023354 210 --------KGGPGI-----------TQADLLVINKTDLASAI 232 (283)
Q Consensus 210 --------~~~~~i-----------~~ad~ivi~K~g~i~~~ 232 (283)
+.+.++ .+||++++++.|++.+.
T Consensus 171 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 171 EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQV 212 (213)
T ss_pred HHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 112221 56889998888887653
No 85
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.90 E-value=8.5e-24 Score=185.43 Aligned_cols=169 Identities=23% Similarity=0.172 Sum_probs=121.9
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhccccCCchH--------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------- 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~-------- 138 (283)
..+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+ +..++|++|++.
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 4788899985 59999999999999999999999999987 999999888766555444 346999999753
Q ss_pred HHHHhCCCCC-C----------ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 139 RAVETGGCPH-A----------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 139 ~~i~~~g~~~-~----------~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
+.+.++.... . ...+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 173 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 1122211100 0 0111223455677777776666777767 999999999999998 58888888 9998
Q ss_pred CCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 205 DKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 205 ~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
.|... +.+.++ .+||++++++.|++...|+..+.
T Consensus 174 LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 174 LNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 75321 112221 57999999999999887766544
No 86
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.4e-23 Score=186.00 Aligned_cols=187 Identities=17% Similarity=0.107 Sum_probs=134.1
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.+...++.+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 3555566666643 35789999984 59999999999999999999999999987 99999988876555566677899
Q ss_pred ccCCchH--------HHHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354 132 ALPEERI--------RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII 196 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l 196 (283)
|++|++. +.+.++.+... ........+.+.++.+......+..+.+ |+||+||+.+|++++ +|.|
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9998742 12222211100 0011223445677777766666777777 999999999999998 5888
Q ss_pred EEEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHH
Q 023354 197 YIID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMERD 242 (283)
Q Consensus 197 ~llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~ 242 (283)
+++| |+++.|... ..+.++ ..||++++++.|++...++..+.....
T Consensus 169 llLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 239 (265)
T PRK10575 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239 (265)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcCHH
Confidence 8888 999875321 112221 679999999999998888776665543
No 87
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.3e-23 Score=186.11 Aligned_cols=190 Identities=21% Similarity=0.181 Sum_probs=134.6
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (283)
..++...|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+|
T Consensus 10 i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 87 (265)
T PRK10253 10 GEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87 (265)
T ss_pred EEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence 3444555542 34788999984 59999999999999999999999999987 99999988876666666677899999
Q ss_pred CchH--------HHHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 135 EERI--------RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 135 q~~~--------~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
|++. +.+.++..... ........+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++
T Consensus 88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 167 (265)
T PRK10253 88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLL 167 (265)
T ss_pred ccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 9753 12222211110 0111222445667777666666777777 999999999999998 4888888
Q ss_pred e-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcC
Q 023354 200 D-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRD 248 (283)
Q Consensus 200 D-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~ 248 (283)
| |+++.|.. .+.+.+ ..+||++++++.|++...|+..+.+........+
T Consensus 168 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 241 (265)
T PRK10253 168 DEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIY 241 (265)
T ss_pred eCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhhHHHHHHHh
Confidence 8 99987532 111222 1679999999999999888877765544333333
No 88
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.7e-23 Score=192.28 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=124.4
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC----C-CcEEEEeecCCCCCHHHHH----HhccccCCchHH
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEERIR 139 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~----~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~~ 139 (283)
.++++++|... |++++|+|+||||||||+++|+|++++ + |+|.+.+.++......+++ +.++|+||++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 47899999855 999999999999999999999999873 5 9999999998776654443 259999998631
Q ss_pred ----------HHHhCC--CCCCChHHHHHHHHHHHHHccccc---cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354 140 ----------AVETGG--CPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (283)
Q Consensus 140 ----------~i~~~g--~~~~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p 201 (283)
.+.... .......+....+.+.|+.+++.. ..+..+.+ ||||+||+.||++++ +|.|+++| |
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP 180 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 110000 000111222335566788777643 34556666 999999999999998 58888888 9
Q ss_pred CCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 202 SGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 202 t~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|++.|.. ++.+.++ .+||+|++++.|++++.|+..+++.
T Consensus 181 ts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 181 TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 9987532 1112221 6899999999999999988877764
No 89
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.90 E-value=9.2e-24 Score=208.41 Aligned_cols=181 Identities=16% Similarity=0.097 Sum_probs=137.8
Q ss_pred CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+.+.+.+++|.|+.+ .+.+++++|..+ |++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+...+++.+
T Consensus 339 ~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 568888999998743 468999999955 9999999999999999999999999998 9999999999988999999999
Q ss_pred cccCCchHHH------HHhCCCCCCChHHHHHHHHHHHHHcc-------ccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354 131 GALPEERIRA------VETGGCPHAAIREDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSRELA 192 (283)
Q Consensus 131 g~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~~l~~l~-------~~~~~d~~i~e-----SgGq~q~~~ia~al~ 192 (283)
+|+||++..+ +.+.+.+ .+ .+.+ .++++.++ ...++|..+.| ||||+||+++||+++
T Consensus 418 ~~v~Q~~~lF~~Ti~~NI~~~~~-~~-d~~i---~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl 492 (592)
T PRK10790 418 AMVQQDPVVLADTFLANVTLGRD-IS-EEQV---WQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV 492 (592)
T ss_pred EEEccCCccccchHHHHHHhCCC-CC-HHHH---HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999997522 2222222 11 2222 22332222 23466777766 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHH
Q 023354 193 -DYIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
++.|+++| ||++.|...+ ... .+..||+|+++..|++.+.|+..+.+
T Consensus 493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 493 QTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 47777777 9998653211 011 13679999999999999999887765
No 90
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.9e-23 Score=186.88 Aligned_cols=186 Identities=16% Similarity=0.034 Sum_probs=133.3
Q ss_pred cccccCCCCCCCC----CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-HHHHH
Q 023354 55 SHEPIYSPGYFSR----RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFL 127 (283)
Q Consensus 55 ~~~~~~~~~~~~~----~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-~~~~~ 127 (283)
+.+.+.++.|... ..+++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...++
T Consensus 5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 84 (280)
T PRK13633 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIR 84 (280)
T ss_pred EEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHh
Confidence 3445566666542 235899999985 49999999999999999999999999987 99999998876432 34567
Q ss_pred HhccccCCchHHH---------HHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 128 MRNGALPEERIRA---------VETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 128 ~~ig~v~q~~~~~---------i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
+.+||+||++... +.++..... ...+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.
T Consensus 85 ~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ 164 (280)
T PRK13633 85 NKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPE 164 (280)
T ss_pred hheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7899999986311 111111101 1111223455677777777767777777 999999999999998 588
Q ss_pred EEEEe-CCCCCCchh-------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 196 IYIID-VSGGDKIPR-------------KGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 196 l~llD-pt~g~~l~~-------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++++| |+++.|... +.+.+ +..||++++++.|++...|++.+.+.
T Consensus 165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 165 CIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 88888 999875321 11222 14599999999999998888777654
No 91
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.2e-24 Score=179.29 Aligned_cols=174 Identities=16% Similarity=0.133 Sum_probs=123.8
Q ss_pred CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc--C----CCcEEEEeecCCCC--CHHHHHHhccccCCchH
Q 023354 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR--D----KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI 138 (283)
Q Consensus 68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~--~----~g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~ 138 (283)
...++.++++..+ +.+++||||+||||||||+++..+.. | +|+|.+.+.++... +..++|+++|+|||.|.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 4568889999865 99999999999999999999998754 2 38999999999764 57899999999999874
Q ss_pred -------HHHHhCCCCCCChHHHHH-HHHHHHHHccccc----cC-CCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354 139 -------RAVETGGCPHAAIREDIS-INLGPLEELSNLF----KA-DLLLCESGGDNLAANFSRELA-DYIIYIID-VSG 203 (283)
Q Consensus 139 -------~~i~~~g~~~~~~~~~~~-~~~~~l~~l~~~~----~~-d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~ 203 (283)
+.+.+|...+......+. .+...|....+.+ .+ +....-||||+||++|||+++ .|.|+|+| |++
T Consensus 99 PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtS 178 (253)
T COG1117 99 PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178 (253)
T ss_pred CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCccc
Confidence 334444332222112222 2333444333322 12 222334999999999999999 58888888 999
Q ss_pred CCCch-------------hhcCCc---------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 204 GDKIP-------------RKGGPG---------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 204 g~~l~-------------~~~~~~---------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
.+|.. +++... .+.+|...+...|.+++.|+..+.|..
T Consensus 179 ALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 179 ALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred ccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 86531 121111 278899999999999999988888764
No 92
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.90 E-value=2.4e-23 Score=208.92 Aligned_cols=188 Identities=15% Similarity=0.142 Sum_probs=141.0
Q ss_pred CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.+++|.|+++..+.+++++|.. +|++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus 453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 453 RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 4668889999999877667899999985 49999999999999999999999999987 999999999999998999999
Q ss_pred ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
++||+|++..+ +..-+.+..+. +.+..+.+ .+.++. ...+++..+.+ ||||+||+++||+++ +
T Consensus 533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~-~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIALCNPGAPF-EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred CeEEccCCeehhhhHHHHHhcCCCCCCH-HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999997422 22223333322 22221111 122221 23356777665 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|.++++| ||++.|...+ .+. .++.||+|++++.|++.+.|+..+.+.
T Consensus 612 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 612 PRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 7777777 9998653211 111 136799999999999999998776653
No 93
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=5e-24 Score=191.28 Aligned_cols=184 Identities=14% Similarity=0.115 Sum_probs=131.5
Q ss_pred ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
.+.+.++.+.|+....+.+++++|..+ |++++|+|+||||||||+++|+|++.+.|+|.+++.++...+...+++.++|
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 345667777777655678999999865 9999999999999999999999999856999999999877777788889999
Q ss_pred cCCchHHHHHh---CCCCCC-ChHHHHHHHHHHHHHccccc-------cCCCcccC-----CchHHHHHHHHHHhc-CCc
Q 023354 133 LPEERIRAVET---GGCPHA-AIREDISINLGPLEELSNLF-------KADLLLCE-----SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 133 v~q~~~~~i~~---~g~~~~-~~~~~~~~~~~~l~~l~~~~-------~~d~~i~e-----SgGq~q~~~ia~al~-~~~ 195 (283)
+||++..+..+ .-.+.. ...+ .+.+.++.+++.. .++..+.+ |+||+||+++||+++ +|.
T Consensus 82 v~q~~~lf~~tv~~nl~~~~~~~~~---~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 82 IPQKVFIFSGTFRKNLDPYGKWSDE---EIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred ECCCcccchhhHHHHhhhccCCCHH---HHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99987422110 000111 1111 2233444443322 22333322 999999999999998 588
Q ss_pred EEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 196 IYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 196 l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++| |+++.|.... ...+ +..||+|++++.|++.+.|++.+++.
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh
Confidence 88887 9998653211 1111 25699999999999999999887765
No 94
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3e-23 Score=180.24 Aligned_cols=165 Identities=21% Similarity=0.158 Sum_probs=119.0
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------- 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------- 139 (283)
..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++|++..
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWE 92 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCccccccCcHHH
Confidence 4788899985 59999999999999999999999999987 999998877654 234556779999998631
Q ss_pred HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354 140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------ 209 (283)
Q Consensus 140 ~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------ 209 (283)
.+.+..... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|...
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 172 (220)
T cd03265 93 NLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 111110000 11111222455677777776666777777 999999999999998 58888888 999865321
Q ss_pred -------hcCCcc-----------cccCEEEEEcCCcccccCCh
Q 023354 210 -------KGGPGI-----------TQADLLVINKTDLASAIGAD 235 (283)
Q Consensus 210 -------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~ 235 (283)
+.+.++ .+||++++++.|++...+++
T Consensus 173 ~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 216 (220)
T cd03265 173 YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP 216 (220)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCCh
Confidence 112221 57999999999999876654
No 95
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-23 Score=194.87 Aligned_cols=182 Identities=15% Similarity=0.080 Sum_probs=133.5
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+....|.. ..++++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+ .++.+||
T Consensus 20 l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 95 (377)
T PRK11607 20 LEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINM 95 (377)
T ss_pred EEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 444555555532 34788899985 59999999999999999999999999987 999999988765443 3568999
Q ss_pred cCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 133 LPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 133 v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
+||++. +.+.++.... ....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|.++|+|
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE 175 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999863 2222221111 11112223455677888777777777777 999999999999999 58888888
Q ss_pred CCCCCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 VSGGDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 pt~g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|... +.+.+ ..+||++++++.|++.+.|++.+.+.
T Consensus 176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999865321 11222 26899999999999999999888765
No 96
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.9e-23 Score=189.82 Aligned_cols=172 Identities=15% Similarity=0.110 Sum_probs=127.9
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchHH----
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR---- 139 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~---- 139 (283)
..++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...+.. .+++.++|+||++..
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 35789999985 49999999999999999999999999987 9999999988766543 355679999998631
Q ss_pred ------HHHhCC--CCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 140 ------AVETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 140 ------~i~~~g--~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
.+.... .......+....+.+.|+.+++. ..++..+.+ ||||+||++||++|+ +|.++++| ||++.|.
T Consensus 108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~ 187 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187 (327)
T ss_pred ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence 111100 00111222334566778888774 356777777 999999999999998 58888888 9998753
Q ss_pred h-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 208 P-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 208 ~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
. ++.+.++ .+||+|++++.|++++.|+..+++.
T Consensus 188 ~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 188 SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 2 1112221 5799999999999999998877765
No 97
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.90 E-value=1.8e-23 Score=181.68 Aligned_cols=167 Identities=19% Similarity=0.125 Sum_probs=116.5
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhccccCCchHH-------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERIR------- 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~~------- 139 (283)
..+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..++ ++.++|++|++..
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 5788899985 59999999999999999999999999987 999999988766555444 4569999998631
Q ss_pred -HHHhCCCCCCChHHHHHHHHHHHHHc-cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh----
Q 023354 140 -AVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK---- 210 (283)
Q Consensus 140 -~i~~~g~~~~~~~~~~~~~~~~l~~l-~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~---- 210 (283)
.+.+...... ..+....+.+.++.+ ......+..+.+ |+||+||+++|++++ +|.++++| |+++.|....
T Consensus 94 ~~l~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 172 (222)
T cd03224 94 ENLLLGAYARR-RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172 (222)
T ss_pred HHHHHHhhhcC-chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence 1111111110 011111223344544 234445666666 999999999999998 58888888 9998653211
Q ss_pred --------cCCc-----------ccccCEEEEEcCCcccccCChHH
Q 023354 211 --------GGPG-----------ITQADLLVINKTDLASAIGADLA 237 (283)
Q Consensus 211 --------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e 237 (283)
.+.+ ..+||++++++.|++...++..+
T Consensus 173 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 173 EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence 1122 16799999999999987766544
No 98
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.90 E-value=2.2e-23 Score=204.79 Aligned_cols=188 Identities=19% Similarity=0.172 Sum_probs=139.5
Q ss_pred CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.++++.|++...+.+++++|.. +|++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus 328 ~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred CCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 3568889999999876667899999985 59999999999999999999999999998 999999999988888889999
Q ss_pred ccccCCchHH------HHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIR------AVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~------~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
++|+||++.. .+.+.+.+.....+.+..+.+ .+.++. ...++|..+.+ ||||+||+++||+++ +
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999852 222333321111222222111 222221 23456777765 999999999999998 4
Q ss_pred CcEEEEe-CCCCCCchh----------h-cCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 194 YIIYIID-VSGGDKIPR----------K-GGPG----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~----------~-~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+.|+++| ||++.|... . ...+ +..||+|+.++.|++.+.|+..+.+
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 7777776 999865321 1 1111 3789999999999999888877654
No 99
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.6e-23 Score=184.22 Aligned_cols=177 Identities=18% Similarity=0.093 Sum_probs=123.1
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
.++.+.|.. ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... .++.++|++|
T Consensus 6 ~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q 81 (239)
T cd03296 6 RNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQ 81 (239)
T ss_pred EeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEec
Confidence 344445533 35788999984 59999999999999999999999999987 999998887654332 2357999999
Q ss_pred chHH--------HHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 136 ERIR--------AVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 136 ~~~~--------~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
++.. .+.++..... ...+....+.+.++.++.....+..+.+ |+||+||++||++++ +|.++++|
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8531 1111111000 1111122345567777665555666666 999999999999998 58888888
Q ss_pred -CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 201 -VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 201 -pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
|+++.|.. .+.+.++ .+||++++++.|++...|+..+.
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99986532 1112221 57999999999999887776544
No 100
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=2.1e-23 Score=180.77 Aligned_cols=139 Identities=22% Similarity=0.145 Sum_probs=101.0
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH----HHHhccccCCchHH---
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNGALPEERIR--- 139 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~----~~~~ig~v~q~~~~--- 139 (283)
...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.. .++.++|++|++..
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 45788999985 59999999999999999999999999987 99999988776544322 34579999997531
Q ss_pred -----HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 140 -----AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 140 -----~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
.+.++.... .........+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~ 173 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCH
Confidence 111111111 01111122445677777766656666666 999999999999998 58888888 9998764
No 101
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.90 E-value=4.6e-23 Score=183.15 Aligned_cols=182 Identities=19% Similarity=0.212 Sum_probs=131.4
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (283)
...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++|++|++.
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR 93 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence 35788999984 59999999999999999999999999987 999999988776666566678999999752
Q ss_pred HHHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-
Q 023354 139 RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR- 209 (283)
Q Consensus 139 ~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~- 209 (283)
+.+.++..... ...+....+.+.++.+......+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 173 (256)
T TIGR03873 94 DVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ 173 (256)
T ss_pred HHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence 11222211110 0112223455677777766666777767 999999999999998 58888888 999865321
Q ss_pred -----------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC
Q 023354 210 -----------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGG 250 (283)
Q Consensus 210 -----------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~ 250 (283)
+.+.++ .+||++++++.|++...|+..+.+........+..
T Consensus 174 ~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 236 (256)
T TIGR03873 174 LETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGV 236 (256)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhCHHHHHHHhCC
Confidence 112221 67999999999999988887776665444444343
No 102
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.2e-23 Score=182.67 Aligned_cols=178 Identities=18% Similarity=0.101 Sum_probs=124.6
Q ss_pred CCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354 60 YSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
+.+.|... ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++
T Consensus 6 l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (242)
T cd03295 6 VTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQI 84 (242)
T ss_pred EEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCc
Confidence 33444432 34788899985 59999999999999999999999999987 99999988876555555667899999975
Q ss_pred HH--------HHHhCCCCC-CChHHHHHHHHHHHHHccccc--cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354 138 IR--------AVETGGCPH-AAIREDISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (283)
Q Consensus 138 ~~--------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~--~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~ 203 (283)
.. .+.++.... ....+....+.+.++.++... ..+..+.+ |+||+||++||++++ +|.++++| |++
T Consensus 85 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 164 (242)
T cd03295 85 GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFG 164 (242)
T ss_pred cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 31 111110000 011112234456677776653 44565666 999999999999998 58888888 999
Q ss_pred CCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHH
Q 023354 204 GDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 204 g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+.|... +.+.+ ..+||++++++.|++.+.++..+.
T Consensus 165 ~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 165 ALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 865321 11222 167999999999999887766544
No 103
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=6.7e-24 Score=227.38 Aligned_cols=186 Identities=17% Similarity=0.139 Sum_probs=143.3
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.|.+.+.++++.|+++..+++++++|..+ |+++||+|++|||||||+++|++++.|+ |+|.+++.|+.+.+...+|++
T Consensus 1282 ~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred CCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc
Confidence 46799999999998776789999999965 9999999999999999999999999988 999999999999999999999
Q ss_pred ccccCCchHHHHHh---CCCCCC-ChHHHHHHHHHHHHHcc-------ccccCCCcccC-----CchHHHHHHHHHHhc-
Q 023354 130 NGALPEERIRAVET---GGCPHA-AIREDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSRELA- 192 (283)
Q Consensus 130 ig~v~q~~~~~i~~---~g~~~~-~~~~~~~~~~~~l~~l~-------~~~~~d~~i~e-----SgGq~q~~~ia~al~- 192 (283)
++++||++..+..+ +-.+.. ...+++ .++++... ...++|..+.| |+||+||++|||+++
T Consensus 1362 i~iVpQdp~LF~gTIr~NLdp~~~~sdeei---~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEV---WWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred CeEECCCCcccCccHHHHcCcccCCCHHHH---HHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 99999998532111 111111 112222 23333222 12467888876 999999999999998
Q ss_pred CCcEEEEe-CCCCCCchh----------hc-C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354 193 DYIIYIID-VSGGDKIPR----------KG-G----------PGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 193 ~~~l~llD-pt~g~~l~~----------~~-~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.|+++| ||+..|... .. . .++..||+|++++.|++++.|++.+++.
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 47777777 888755321 11 1 1247899999999999999999987764
No 104
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=2.3e-23 Score=171.85 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=123.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHhCCCCCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA 149 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~~g~~~~ 149 (283)
..|++++|+||+|||||||||+++|...|. |.|.+.+.|.....+.+ |-++++||+.. ..+.+|..|..
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhhhhhccccchhhhhhhhhcccCCccc
Confidence 459999999999999999999999999987 99999999998776654 45788899864 23445555655
Q ss_pred ChH-HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC--CcEEEEeCCCCCCc-------------hhhcC
Q 023354 150 AIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD--YIIYIIDVSGGDKI-------------PRKGG 212 (283)
Q Consensus 150 ~~~-~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~--~~l~llDpt~g~~l-------------~~~~~ 212 (283)
... ++...+..++..+++....++...+ ||||+||+++||.++. |++++++|.+..+. ..+.+
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~ 180 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERK 180 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC
Confidence 443 3344666788888888888888888 9999999999999994 55555559887542 12222
Q ss_pred Cc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 213 PG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 213 ~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.+ .+.++++++...|++.+.|+..+.+.
T Consensus 181 ~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 181 MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred CEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 22 27899999999999999988777665
No 105
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.90 E-value=1.9e-23 Score=222.37 Aligned_cols=189 Identities=20% Similarity=0.163 Sum_probs=143.4
Q ss_pred CCCccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC---------------------
Q 023354 51 LAPHSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD--------------------- 107 (283)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~--------------------- 107 (283)
..+.+.+.+++|.|+.+. .+.+++++|..+ |++++|+||+|||||||+++|+|++.|
T Consensus 1162 ~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1162 IKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred CCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 346799999999999754 478999999955 999999999999999999999999997
Q ss_pred ---------------------------------C-CcEEEEeecCCCCCHHHHHHhccccCCchHHH------HHhCCCC
Q 023354 108 ---------------------------------K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------VETGGCP 147 (283)
Q Consensus 108 ---------------------------------~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------i~~~g~~ 147 (283)
+ |+|.+++.++..++...+|+.++||+|++..+ +...|.+
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence 4 99999999999999999999999999998522 2223434
Q ss_pred CCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch--------
Q 023354 148 HAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-------- 208 (283)
Q Consensus 148 ~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------- 208 (283)
..+. +++..+.+ .+.++ .+..++|..++| ||||+||++|||||+ +|.|+|+| ||+..|..
T Consensus 1322 ~at~-eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1322 DATR-EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCH-HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 3332 22222111 22232 234678888887 999999999999998 58888888 99875421
Q ss_pred --hh---cCCc----------ccccCEEEEEcC----Cccc-ccCChHHHHh
Q 023354 209 --RK---GGPG----------ITQADLLVINKT----DLAS-AIGADLAVME 240 (283)
Q Consensus 209 --~~---~~~~----------i~~ad~ivi~K~----g~i~-~~g~~~e~~~ 240 (283)
.. .+.+ ++.||+|++++. |+++ +.|+..+++.
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 11 1112 478999999998 8854 7898877764
No 106
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.1e-23 Score=184.42 Aligned_cols=181 Identities=13% Similarity=0.063 Sum_probs=126.8
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhcccc
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGAL 133 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v 133 (283)
.++++.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. .....+++.++|+
T Consensus 5 ~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 82 (271)
T PRK13638 5 SDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATV 82 (271)
T ss_pred EEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEE
Confidence 344445532 35789999985 59999999999999999999999999987 999999988742 2234556789999
Q ss_pred CCchHH---------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 134 PEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 134 ~q~~~~---------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
+|++.. .+.++.... ....+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++|
T Consensus 83 ~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE 162 (271)
T PRK13638 83 FQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE 162 (271)
T ss_pred eeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 998531 111110000 11111122344567776665556666666 999999999999998 58888888
Q ss_pred CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 201 VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|... +.+.++ .+||++++++.|++.+.|++.+.+.
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 163 PTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999865321 112221 6799999999999998888776655
No 107
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.90 E-value=1.9e-23 Score=182.71 Aligned_cols=170 Identities=19% Similarity=0.152 Sum_probs=121.0
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhccccCCchH--------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------- 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~-------- 138 (283)
..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+ ++.++|++|++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 4788999984 59999999999999999999999999987 999998887765544443 346999999753
Q ss_pred HHHHhCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354 139 RAVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----- 209 (283)
Q Consensus 139 ~~i~~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----- 209 (283)
+.+.+........ .+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~ 173 (232)
T cd03218 94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 1111111001111 11122345567777666656666666 999999999999998 58888888 999875321
Q ss_pred -------hcCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 210 -------KGGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 210 -------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+.+.+ ..+||++++++.|++...++..+.+
T Consensus 174 ~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 174 KIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 11222 1679999999999998877665543
No 108
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.2e-23 Score=194.54 Aligned_cols=171 Identities=16% Similarity=0.109 Sum_probs=125.8
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhccccCCchH-----
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI----- 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~----- 138 (283)
.++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+ ++.+||++|++.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 4789999985 59999999999999999999999999997 999999998876554433 246999999753
Q ss_pred ---HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch---
Q 023354 139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP--- 208 (283)
Q Consensus 139 ---~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~--- 208 (283)
+.+.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.|||+++ +|.++|+| |+++.|..
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~ 201 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 1122211100 01112223456678888777667777777 999999999999998 58888888 99986532
Q ss_pred ----------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 209 ----------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 209 ----------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.+.+.+ ..+||++++++.|++...|++.+.+.
T Consensus 202 ~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 202 EMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 111222 16799999999999998887766554
No 109
>PLN03232 ABC transporter C family member; Provisional
Probab=99.90 E-value=1.3e-23 Score=224.87 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=142.4
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.|.+.+.++++.|.++..+++++++|..+ |+++||+|++|||||||+++|+|++.|+ |+|.+++.|+.+.+...+|++
T Consensus 1232 ~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred CCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 46789999999997766779999999955 9999999999999999999999999998 999999999999999999999
Q ss_pred ccccCCchHHH------HHhCCCCCCChHHHHHHHHHHHHHcc-------ccccCCCcccC-----CchHHHHHHHHHHh
Q 023354 130 NGALPEERIRA------VETGGCPHAAIREDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSREL 191 (283)
Q Consensus 130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~~l~~l~-------~~~~~d~~i~e-----SgGq~q~~~ia~al 191 (283)
+++|||++..+ +...+. ..+ .+++ .++++... ...++|..+.| |||||||++|||++
T Consensus 1312 i~iVpQdp~LF~gTIr~NL~~~~-~~s-deei---~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232 1312 LSIIPQSPVLFSGTVRFNIDPFS-EHN-DADL---WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred cEEECCCCeeeCccHHHHcCCCC-CCC-HHHH---HHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 99999998522 222221 111 2222 23333221 23467877776 99999999999999
Q ss_pred cC-CcEEEEe-CCCCCCchh----------hc-C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354 192 AD-YIIYIID-VSGGDKIPR----------KG-G----------PGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 192 ~~-~~l~llD-pt~g~~l~~----------~~-~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+. +.|+++| ||+..|... .. . .++..||+|++++.|++++.|++.+++.
T Consensus 1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 84 7777777 888765321 10 1 1247799999999999999999988764
No 110
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.6e-23 Score=187.11 Aligned_cols=189 Identities=13% Similarity=0.063 Sum_probs=130.6
Q ss_pred CCccccccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC----C-
Q 023354 52 APHSHEPIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----K- 121 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~----~- 121 (283)
.+++...+.+..|.... .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 45566666666665432 25789999985 59999999999999999999999999987 999998887642 1
Q ss_pred CHHHHHHhccccCCchHH---------HHHhCCCCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHH
Q 023354 122 EDGEFLMRNGALPEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSR 189 (283)
Q Consensus 122 ~~~~~~~~ig~v~q~~~~---------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~ 189 (283)
....+++.++|++|++.. .+.++.... ....+....+.+.++.+.+. ...+..+.+ |+||+||+.||+
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 234456679999998521 111111000 11111122344566666653 345666666 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 190 ELA-DYIIYIID-VSGGDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+++ +|.++++| |+++.|... ..+.+ .++||++++++.|++...|+..+.+.
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 998 58888888 999865321 11222 16799999999999988887766554
No 111
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.89 E-value=7.2e-23 Score=181.21 Aligned_cols=171 Identities=15% Similarity=0.104 Sum_probs=124.0
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchH--------HHH
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i 141 (283)
.+++++|.. +|++++|+|+||||||||+++|+|++++.|+|.+.+.++.......+++.++|++|++. +.+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 578888884 59999999999999999999999998666999999988876566666677999998752 122
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc--------CCcEEEEe-CCCCCCchh--
Q 023354 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA--------DYIIYIID-VSGGDKIPR-- 209 (283)
Q Consensus 142 ~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~--------~~~l~llD-pt~g~~l~~-- 209 (283)
.+.........+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 222111111112223455677777766666666666 999999999999998 44777777 999875321
Q ss_pred ----------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 210 ----------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 210 ----------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+.+.+ ..+||++++++.|++.+.|+..+.+..
T Consensus 171 ~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 171 ALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 11122 168999999999999988877665543
No 112
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.89 E-value=4.3e-23 Score=203.54 Aligned_cols=185 Identities=19% Similarity=0.192 Sum_probs=137.3
Q ss_pred CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+.+.+.+++|.|+.. .+.++++++.. +|++++|+|++|||||||+++|+|+++|+ |.|.+++.++...+...+++.+
T Consensus 333 ~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 333 GAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 457888999999743 45799999985 59999999999999999999999999998 9999999999999989999999
Q ss_pred cccCCchH------HHHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-CC
Q 023354 131 GALPEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 131 g~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~ 194 (283)
+|+||++. ..+.+.+.+..+ .+.+..+.+ .+..+. ...++|..+.+ ||||+||+++||+++ ++
T Consensus 412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~-d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 412 AVVFQDAGLFNRSIEDNIRVGRPDAT-DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred EEEecCcccccccHHHHHhcCCCCCC-HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999974 222222333332 222222211 122221 23456666655 999999999999998 47
Q ss_pred cEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 195 IIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 195 ~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.++++| ||++.|...+ ...+ ++.||+|++++.|.+.+.|+..+.+
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 777777 9998653211 1111 3789999999999999988876654
No 113
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.1e-23 Score=183.40 Aligned_cols=190 Identities=22% Similarity=0.207 Sum_probs=132.8
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
.+..+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++|++|
T Consensus 6 ~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (255)
T PRK11231 6 ENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQ 83 (255)
T ss_pred EeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecc
Confidence 344455532 35788999984 59999999999999999999999999987 999998887765555566678999999
Q ss_pred chH--------HHHHhCCCCC----CC-hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 136 ERI--------RAVETGGCPH----AA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 136 ~~~--------~~i~~~g~~~----~~-~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
++. +.+.++.... .. .......+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++|
T Consensus 84 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 163 (255)
T PRK11231 84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD 163 (255)
T ss_pred cCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 753 1222221110 00 011222345566766666556666766 999999999999998 58888888
Q ss_pred -CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC
Q 023354 201 -VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRDG 249 (283)
Q Consensus 201 -pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~ 249 (283)
|+++.|... +.+.+ .++||++++++.|++...|+..+.+........+.
T Consensus 164 EP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 236 (255)
T PRK11231 164 EPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFD 236 (255)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCHHHHHHHhC
Confidence 999875321 11222 16799999999999988887776665444344433
No 114
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=2.8e-23 Score=188.91 Aligned_cols=170 Identities=16% Similarity=0.097 Sum_probs=125.5
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (283)
..++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.+||+||++.
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~l~~~~tv~ 93 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVR 93 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCCCCCCCcHH
Confidence 347899999855 9999999999999999999999999998 999999988765 34456778999999853
Q ss_pred HHHHhCC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchhh----
Q 023354 139 RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPRK---- 210 (283)
Q Consensus 139 ~~i~~~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~~---- 210 (283)
+++.+.. .......+....+.+.++.+++....+..+.. |+||+||+.+|++++. |.++++| |++|.|....
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~ 173 (301)
T TIGR03522 94 EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIR 173 (301)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1121111 00001111123445677777777667777777 9999999999999994 8888888 9999764311
Q ss_pred -----c--CCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 211 -----G--GPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 211 -----~--~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
. ..++ ++||+|++++.|++.+.|+..+..
T Consensus 174 ~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 174 NVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred HHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 1 1221 679999999999999988876653
No 115
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=3.4e-23 Score=178.67 Aligned_cols=139 Identities=21% Similarity=0.105 Sum_probs=102.0
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-H-----
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-A----- 140 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~----- 140 (283)
...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++|++|++.. +
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 45788999985 59999999999999999999999999987 9999998887655555667789999998521 1
Q ss_pred ---HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 141 ---VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 141 ---i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
+.++.... .........+.+.++.+++....+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 167 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDP 167 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 11110000 01111122344567777666556666666 999999999999998 58888888 9999764
No 116
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.1e-23 Score=185.07 Aligned_cols=186 Identities=14% Similarity=0.013 Sum_probs=132.6
Q ss_pred cccccCCCCCCCCC-CCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 55 SHEPIYSPGYFSRR-APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
+.+.++.+.|.... .+.+++++|. .+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+|
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG 84 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceE
Confidence 34455666665432 3578999998 459999999999999999999999999987 99999998876555556677899
Q ss_pred ccCCchHH-H--------HHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 132 ALPEERIR-A--------VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 132 ~v~q~~~~-~--------i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
|++|++.. + +.++... .....+....+...++.+++....+..+.+ |+||+||+.||++++ +|.++++
T Consensus 85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llll 164 (277)
T PRK13642 85 MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIIL 164 (277)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99998621 1 1111110 011111122345566766665556666666 999999999999998 5888888
Q ss_pred e-CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 200 D-VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 200 D-pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
| |+++.|.. ++.+.+ +..||++++++.|++.+.|+..+.+.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 165 DESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 8 99986532 111222 25699999999999998888776664
No 117
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.8e-23 Score=186.51 Aligned_cols=181 Identities=19% Similarity=0.117 Sum_probs=129.5
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhccccC
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALP 134 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~ 134 (283)
++.+.|.. ....+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. .....+++.++|++
T Consensus 6 ~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 84 (275)
T PRK13639 6 DLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVF 84 (275)
T ss_pred EEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEe
Confidence 34444532 235788999985 49999999999999999999999999987 999999988742 12345667899999
Q ss_pred CchH---------HHHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354 135 EERI---------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (283)
Q Consensus 135 q~~~---------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p 201 (283)
|++. +.+.++... .....+....+.+.++.+++....+..+.+ |+||+||+.+|++++ +|.++++| |
T Consensus 85 q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 85 QNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred eChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9852 111111100 011112223455677888777667777777 999999999999998 58888888 9
Q ss_pred CCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 202 SGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 202 t~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+++.|... +.+.++ ++||++++++.|.+.+.|+..+.+.
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99875321 112221 5799999999999999888777665
No 118
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=6.1e-23 Score=183.81 Aligned_cols=170 Identities=16% Similarity=0.089 Sum_probs=121.3
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhccccCCchHH----
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERIR---- 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~~---- 139 (283)
..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+ ++.++|++|++..
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 4688999985 59999999999999999999999999987 999999887765443322 3469999997531
Q ss_pred ----HHHhCC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh--
Q 023354 140 ----AVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-- 209 (283)
Q Consensus 140 ----~i~~~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-- 209 (283)
.+.++. ............+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++| |+++.|...
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~ 197 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 111110 00001111122445677777776666777777 999999999999998 58888888 999865321
Q ss_pred -----------hcCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 210 -----------KGGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 210 -----------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+.+.+ ..+||++++++.|++...|+..+.+
T Consensus 198 ~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 198 EMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 11222 1679999999999998877765554
No 119
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.89 E-value=2.9e-23 Score=179.95 Aligned_cols=172 Identities=17% Similarity=0.086 Sum_probs=119.9
Q ss_pred cCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354 59 IYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (283)
Q Consensus 59 ~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (283)
++++.|.... .+.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++
T Consensus 6 ~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~ 84 (218)
T cd03266 6 ALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVS 84 (218)
T ss_pred EEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEec
Confidence 4444554322 15788999985 59999999999999999999999999987 999998887754 3445667899999
Q ss_pred CchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354 135 EERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (283)
Q Consensus 135 q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt 202 (283)
|++. +.+.+..... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+
T Consensus 85 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 164 (218)
T cd03266 85 DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT 164 (218)
T ss_pred CCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9852 1111110000 01111223455677777766666666666 999999999999998 58888888 99
Q ss_pred CCCCchhh------------cCCc-----------ccccCEEEEEcCCcccc
Q 023354 203 GGDKIPRK------------GGPG-----------ITQADLLVINKTDLASA 231 (283)
Q Consensus 203 ~g~~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~ 231 (283)
++.|.... .+.+ ..+||++++++.|++.+
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 165 TGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 98753211 1112 15689999998888765
No 120
>PTZ00243 ABC transporter; Provisional
Probab=99.89 E-value=9.2e-24 Score=226.25 Aligned_cols=184 Identities=15% Similarity=0.092 Sum_probs=143.1
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.|.+.+.++++.|++...++|++++|..+ |++|||+|++|||||||+++|+|++.|+ |+|.+++.|+...+..++|+.
T Consensus 1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred CCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence 57799999999998876678999999965 9999999999999999999999999997 999999999999999999999
Q ss_pred ccccCCchHHH------HHhCCCCCCChHHHHHHHHHHHHHccc-------cccCCCcccC-----CchHHHHHHHHHHh
Q 023354 130 NGALPEERIRA------VETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSREL 191 (283)
Q Consensus 130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~~l~~l~~-------~~~~d~~i~e-----SgGq~q~~~ia~al 191 (283)
+++|||++..+ +.... ...+ .+. +.++++..+. ..++|..+.| |+||+||++|||++
T Consensus 1386 I~iVpQdp~LF~gTIreNIdp~-~~~s-dee---I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243 1386 FSMIPQDPVLFDGTVRQNVDPF-LEAS-SAE---VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL 1460 (1560)
T ss_pred ceEECCCCccccccHHHHhCcc-cCCC-HHH---HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 99999998532 11111 1112 122 2333333222 3467887776 99999999999999
Q ss_pred cC--CcEEEEe-CCCCCCchh----------hc-C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354 192 AD--YIIYIID-VSGGDKIPR----------KG-G----------PGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 192 ~~--~~l~llD-pt~g~~l~~----------~~-~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+. +.|+|+| ||+..|... .. . .++..||+|++++.|++.+.|++.+++.
T Consensus 1461 L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1461 LKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 94 5777777 888754321 10 1 1247899999999999999999988764
No 121
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=2.1e-22 Score=180.57 Aligned_cols=183 Identities=19% Similarity=0.179 Sum_probs=131.5
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC---------CCcEEEEeecCCCCCHHHHHHhccccCCchH-
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD---------KYSLAAVTNDIFTKEDGEFLMRNGALPEERI- 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~---------~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~- 138 (283)
..+.+++|.. +|++++|+||||||||||+++|+|+++| +|+|.+.+.++.......+++.++|++|++.
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 5788999984 5999999999999999999999999987 5899999888766566666677899998752
Q ss_pred -------HHHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc----------CCc
Q 023354 139 -------RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA----------DYI 195 (283)
Q Consensus 139 -------~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~----------~~~ 195 (283)
+.+.++..+.. ...+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~ 174 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174 (272)
T ss_pred CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCC
Confidence 12222222111 0112223445677777766666666666 999999999999998 688
Q ss_pred EEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC
Q 023354 196 IYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGG 250 (283)
Q Consensus 196 l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~ 250 (283)
++++| |+++.|.. ...+.++ .+||++++++.|++.+.|+..+.+........++.
T Consensus 175 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 254 (272)
T PRK13547 175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIARCYGF 254 (272)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcCHHHHHHHhCC
Confidence 88888 99986532 1112221 57999999999999988887777665444444444
Q ss_pred Ce
Q 023354 251 PF 252 (283)
Q Consensus 251 ~i 252 (283)
++
T Consensus 255 ~~ 256 (272)
T PRK13547 255 AV 256 (272)
T ss_pred Ce
Confidence 43
No 122
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.89 E-value=3.6e-23 Score=185.23 Aligned_cols=184 Identities=20% Similarity=0.057 Sum_probs=128.5
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHh
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMR 129 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ 129 (283)
+...++++.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... .+++.
T Consensus 8 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 8 VDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred EEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 444555555532 34788999985 59999999999999999999999999987 9999998877654332 34567
Q ss_pred ccccCCchH--------HHHHhCCCCC--CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354 130 NGALPEERI--------RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (283)
Q Consensus 130 ig~v~q~~~--------~~i~~~g~~~--~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ 197 (283)
++|++|++. +.+.++.... .........+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 165 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLI 165 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999753 1111110000 11111122345567777776666776766 999999999999998 58888
Q ss_pred EEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 198 IID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 198 llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++| |+++.|... +.+.++ .+||++++++.|++.+.|+..+.+.
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 166 MFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 888 999875321 112221 5799999999999988887666543
No 123
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=2.9e-23 Score=178.44 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=111.5
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-H-----
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-A----- 140 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~----- 140 (283)
...+.+++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.. ...++.++|++|++.. +
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccH
Confidence 35788999984 59999999999999999999999999987 999998877642 3455679999998521 1
Q ss_pred ---HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh----
Q 023354 141 ---VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK---- 210 (283)
Q Consensus 141 ---i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~---- 210 (283)
+.++ .... ......+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|....
T Consensus 90 ~e~l~~~-~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 166 (205)
T cd03226 90 REELLLG-LKEL--DAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166 (205)
T ss_pred HHHHhhh-hhhc--CccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH
Confidence 1111 0000 01112455678888777667777777 999999999999998 58888888 9998764211
Q ss_pred --------cCCcc-----------cccCEEEEEcCCcc
Q 023354 211 --------GGPGI-----------TQADLLVINKTDLA 229 (283)
Q Consensus 211 --------~~~~i-----------~~ad~ivi~K~g~i 229 (283)
.+.++ .+||++++++.|++
T Consensus 167 ~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 11111 46888888877765
No 124
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.89 E-value=4.8e-23 Score=192.18 Aligned_cols=172 Identities=16% Similarity=0.064 Sum_probs=125.5
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee----cCCCCCHHHH---H-HhccccCCchH
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGEF---L-MRNGALPEERI 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~----d~~~~~~~~~---~-~~ig~v~q~~~ 138 (283)
..++++++|..+ |++++|+|+||||||||+++|+|+++|+ |+|.+.+. ++...+..++ + +.++|+||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 346889999854 9999999999999999999999999998 99999875 4444443333 2 46999999763
Q ss_pred --------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 139 --------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 139 --------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
+.+.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.|||+|+ +|.|+++| |+++.|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 1222221100 11122223556778888887777877777 999999999999998 58888888 999865
Q ss_pred ch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 207 IP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 207 l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.. .+.+.+ .++||+|++++.|++.+.|++.+.+.
T Consensus 197 ~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 197 PLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 32 111222 26799999999999999998877653
No 125
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.8e-23 Score=179.99 Aligned_cols=183 Identities=18% Similarity=0.088 Sum_probs=124.6
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig 131 (283)
+.+.++...|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+... +++.++
T Consensus 6 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 6 LSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 344455555532 45789999985 59999999999999999999999999987 99999998876655443 456799
Q ss_pred ccCCchH--------HHHHhCCCCCCChHHHHHHHHHHHHHc-cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 132 ALPEERI--------RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l-~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
|++|++. +.+..+.. ..........+.+.++.+ ......+..+.+ |+||+||+.||++++ +|.++++|
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD 162 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 9998753 11112111 111111111223334444 233333444555 999999999999998 68888888
Q ss_pred -CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 -VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 -pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|... +.+.+ .++||++++++.|++...|+..+.+.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 163 EPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999865321 11222 16799999999999998888766654
No 126
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.89 E-value=2.9e-23 Score=181.07 Aligned_cols=166 Identities=16% Similarity=0.097 Sum_probs=116.7
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc-----cCC-CcEEEEeecCCCCC--HHHHHHhccccCCchHHH
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL-----RDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIRA 140 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~-----~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~~~ 140 (283)
..+++++|.. +|++++|+|+||||||||+++|+|++ +|. |+|.+.+.++...+ ...+++.++|++|++..+
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 5788999985 59999999999999999999999999 887 99999988876544 345567899999986321
Q ss_pred -------HHhCCCCCC-ChHH-HHHHHHHHHHHccccccCCCc--ccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 141 -------VETGGCPHA-AIRE-DISINLGPLEELSNLFKADLL--LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 141 -------i~~~g~~~~-~~~~-~~~~~~~~l~~l~~~~~~d~~--i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
+.++..... .... ....+.+.++.++.....+.. +.+ |+||+||++||++++ +|.++++| |+++.|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 173 (227)
T cd03260 94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173 (227)
T ss_pred cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 111110000 0111 122445567777665544444 355 999999999999998 47787777 999875
Q ss_pred chhh---------c--CCc-----------ccccCEEEEEcCCcccccCCh
Q 023354 207 IPRK---------G--GPG-----------ITQADLLVINKTDLASAIGAD 235 (283)
Q Consensus 207 l~~~---------~--~~~-----------i~~ad~ivi~K~g~i~~~g~~ 235 (283)
...+ . ..+ ..+||++++++.|++.+.|++
T Consensus 174 ~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 174 PISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 3211 0 111 157999999999998876654
No 127
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.2e-23 Score=180.23 Aligned_cols=182 Identities=17% Similarity=0.138 Sum_probs=127.6
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhcccc
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGAL 133 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v 133 (283)
..++.+.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.. .++.++|+
T Consensus 6 ~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 83 (241)
T PRK10895 6 AKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83 (241)
T ss_pred EeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEe
Confidence 3444555532 35788999985 59999999999999999999999999987 99999988876555433 35679999
Q ss_pred CCchH--------HHHHhCCCCC--CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 134 PEERI--------RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 134 ~q~~~--------~~i~~~g~~~--~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
+|++. +.+.+..... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++|
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (241)
T PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163 (241)
T ss_pred ccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99853 1111111001 01111222445667777665555666666 999999999999998 58888888
Q ss_pred CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|... +.+.+ ...||++++++.|++.+.++..+.+.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 164 PFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999865321 11222 16799999999999988887766543
No 128
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=9.5e-23 Score=183.49 Aligned_cols=183 Identities=16% Similarity=0.112 Sum_probs=126.1
Q ss_pred ccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC----CHHHHHH
Q 023354 58 PIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLM 128 (283)
Q Consensus 58 ~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~----~~~~~~~ 128 (283)
.++.+.|.... .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....+++
T Consensus 6 ~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (280)
T PRK13649 6 QNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRK 85 (280)
T ss_pred EEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHh
Confidence 34444554322 35788999985 59999999999999999999999999987 9999998877542 2345667
Q ss_pred hccccCCchH-H--------HHHhCCCCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 129 RNGALPEERI-R--------AVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 129 ~ig~v~q~~~-~--------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
.++|++|++. . .+.++.... ....+....+.+.++.+++. ...+..+.+ |+||+||+.+|++++ +|.
T Consensus 86 ~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 165 (280)
T PRK13649 86 KVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPK 165 (280)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 8999999852 1 111110000 11111112334556666664 345666666 999999999999998 588
Q ss_pred EEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 196 IYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 196 l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++++| |+++.|... +.+.++ .+||++++++.|++...|++.+.+.
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 166 ILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 88888 999875321 112221 5799999999999988887766654
No 129
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.89 E-value=5.4e-23 Score=177.62 Aligned_cols=161 Identities=15% Similarity=0.055 Sum_probs=113.9
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH-------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------- 140 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------- 140 (283)
+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... ++.++|++|++..+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEEecChhhccCCCHHH
Confidence 5788999984 59999999999999999999999999887 9999998887543332 35799999986311
Q ss_pred -HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354 141 -VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------ 209 (283)
Q Consensus 141 -i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------ 209 (283)
+..+.... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|...
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 11111000 11111222445567777666666777777 999999999999998 58888888 999975321
Q ss_pred -------hcCCcc-----------cccCEEEEEcCCccccc
Q 023354 210 -------KGGPGI-----------TQADLLVINKTDLASAI 232 (283)
Q Consensus 210 -------~~~~~i-----------~~ad~ivi~K~g~i~~~ 232 (283)
+.+.++ .+||++++++.|++.+.
T Consensus 172 ~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 112221 56888888888887654
No 130
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.9e-23 Score=180.14 Aligned_cols=177 Identities=16% Similarity=0.082 Sum_probs=125.2
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
.++.+.|.. ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|
T Consensus 7 ~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 84 (241)
T PRK14250 7 KEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQ 84 (241)
T ss_pred EeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEec
Confidence 344444432 35788899985 59999999999999999999999999987 999999988765555566778999999
Q ss_pred chHHH-------HHhCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 136 ERIRA-------VETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 136 ~~~~~-------i~~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
++..+ +.++..... .....+.+.++.++.. ...+..+.+ |+||+||+.+|++++ +|.++++| |+++
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 161 (241)
T PRK14250 85 QPHLFEGTVKDNIEYGPMLKG---EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161 (241)
T ss_pred CchhchhhHHHHHhcchhhcC---cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 86311 111110000 1112344566666664 344555656 999999999999998 58888888 9998
Q ss_pred CCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 205 DKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 205 ~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.|... +.+.++ .+||++++++.|++...+++.+.+
T Consensus 162 LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 162 LDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 65321 112221 579999999999998877776654
No 131
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.89 E-value=6.6e-23 Score=179.98 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354 60 YSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
+.+.|.....+.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++
T Consensus 6 l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (237)
T cd03252 6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQEN 85 (237)
T ss_pred EEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCc
Confidence 34445433356788999984 59999999999999999999999999987 99999888776555556677899999986
Q ss_pred HHH-------HHhCCCCCCChHHHHHHH------HHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 138 IRA-------VETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 138 ~~~-------i~~~g~~~~~~~~~~~~~------~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
..+ +.++ ..... ....... .+.+..+ ......+..+.+ |+||+||+.||++++ +|.++++|
T Consensus 86 ~~~~~tv~~nl~~~-~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 163 (237)
T cd03252 86 VLFNRSIRDNIALA-DPGMS-MERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD 163 (237)
T ss_pred hhccchHHHHhhcc-CCCCC-HHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 311 1111 11111 1111110 1122222 111222344445 999999999999998 58888887
Q ss_pred -CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 -VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 -pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|.... .+.+ +..||++++++.|++.+.|+..+.+.
T Consensus 164 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 164 EATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9998753211 1112 25689999999999998887666543
No 132
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.89 E-value=1.1e-22 Score=187.16 Aligned_cols=186 Identities=16% Similarity=0.110 Sum_probs=130.0
Q ss_pred cccccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC----CCcEEEEeecCCCCCHHHHH
Q 023354 55 SHEPIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFL 127 (283)
Q Consensus 55 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~g~i~i~~~d~~~~~~~~~~ 127 (283)
....+.+..|... ...++++++|.. +|++++|+|+||||||||+++|+|+++| .|+|.+.+.++......+++
T Consensus 13 L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~ 92 (330)
T PRK09473 13 LDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELN 92 (330)
T ss_pred EEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHH
Confidence 3444554444322 235789999985 5999999999999999999999999987 59999999998776655442
Q ss_pred ----HhccccCCchHH----------HHHhC--CCCCCChHHHHHHHHHHHHHcccccc---CCCcccC-CchHHHHHHH
Q 023354 128 ----MRNGALPEERIR----------AVETG--GCPHAAIREDISINLGPLEELSNLFK---ADLLLCE-SGGDNLAANF 187 (283)
Q Consensus 128 ----~~ig~v~q~~~~----------~i~~~--g~~~~~~~~~~~~~~~~l~~l~~~~~---~d~~i~e-SgGq~q~~~i 187 (283)
+.++|+||++.. .+... ........+....+.+.|+.+++... .+....+ ||||+||+.|
T Consensus 93 ~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~I 172 (330)
T PRK09473 93 KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMI 172 (330)
T ss_pred HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHH
Confidence 369999999631 11100 00011122223345566777665432 2445555 9999999999
Q ss_pred HHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 188 SRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 188 a~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|++++ +|.|+|+| |+++.|.. ++.+.++ .+||+|++++.|++++.|+..+++.
T Consensus 173 ArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 173 AMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99998 58888888 99986532 2212221 5799999999999999998877764
No 133
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.89 E-value=1e-22 Score=178.85 Aligned_cols=169 Identities=20% Similarity=0.198 Sum_probs=120.2
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------- 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------- 139 (283)
..+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..++.++|++|++..
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEEEeCCCCCCcccCcHHH
Confidence 4788899984 59999999999999999999999999987 999998887754433 334579999997531
Q ss_pred HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354 140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------ 209 (283)
Q Consensus 140 ~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------ 209 (283)
.+....... .........+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|...
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~ 173 (236)
T TIGR03864 94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA 173 (236)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 111111101 11111222445667777666656666666 999999999999998 58888888 999865321
Q ss_pred -------hcCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 210 -------KGGPG----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 210 -------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+.+.+ +..||++++++.|.+...++..+.+
T Consensus 174 ~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 174 HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 11222 2459999999999998877665444
No 134
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=8.3e-23 Score=179.05 Aligned_cols=153 Identities=16% Similarity=0.093 Sum_probs=108.7
Q ss_pred cccccCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HH
Q 023354 55 SHEPIYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL 127 (283)
Q Consensus 55 ~~~~~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~ 127 (283)
....++++.|.... .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..+ ++
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence 34455566665432 35789999985 59999999999999999999999999987 99999998887655432 22
Q ss_pred -HhccccCCchH--------HHHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 128 -MRNGALPEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 128 -~~ig~v~q~~~--------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
+.++|++|++. +.+.++... .....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 165 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 56999999853 111111100 001112223455677777776656666666 999999999999998 588
Q ss_pred EEEEe-CCCCCCc
Q 023354 196 IYIID-VSGGDKI 207 (283)
Q Consensus 196 l~llD-pt~g~~l 207 (283)
++++| |+++.|.
T Consensus 166 lllLDEPt~~LD~ 178 (233)
T PRK11629 166 LVLADEPTGNLDA 178 (233)
T ss_pred EEEEeCCCCCCCH
Confidence 88888 9999764
No 135
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.89 E-value=1.1e-22 Score=180.08 Aligned_cols=181 Identities=15% Similarity=0.097 Sum_probs=125.0
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC--------HHHH
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--------DGEF 126 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~--------~~~~ 126 (283)
..++.+.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ...+
T Consensus 6 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK11264 6 VKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQL 83 (250)
T ss_pred EeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHh
Confidence 3445555542 35788999985 59999999999999999999999999987 99999888765321 2345
Q ss_pred HHhccccCCchH--------HHHHhCCC--CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354 127 LMRNGALPEERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 127 ~~~ig~v~q~~~--------~~i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~ 194 (283)
++.++|++|++. +.+.++.. ...........+.+.++.++.....+..+.+ |+||+||+.||++++ +|
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p 163 (250)
T PRK11264 84 RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP 163 (250)
T ss_pred hhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCC
Confidence 667999999753 11111100 0011111122345567777666555666666 999999999999998 58
Q ss_pred cEEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 195 IIYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 195 ~l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.++++| |+++.|... +.+.++ .+||++++++.|++.+.|+..+.+
T Consensus 164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 164 EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 888888 999875321 111121 579999999999998877765543
No 136
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.89 E-value=1.2e-22 Score=176.54 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=105.3
Q ss_pred cCCCCCCCCC--CCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HH-Hhc
Q 023354 59 IYSPGYFSRR--APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRN 130 (283)
Q Consensus 59 ~~~~~~~~~~--~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~-~~i 130 (283)
++.+.|.... .+.+.+++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+... ++ +.+
T Consensus 6 ~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 85 (221)
T TIGR02211 6 NLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKL 85 (221)
T ss_pred eeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcE
Confidence 4445554322 3578899998 459999999999999999999999999987 99999988876554433 23 569
Q ss_pred cccCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 131 GALPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 131 g~v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
+|++|++. +.+.+..... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++
T Consensus 86 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 165 (221)
T TIGR02211 86 GFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLA 165 (221)
T ss_pred EEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999853 1111110000 01112223445677777766666676666 999999999999998 5888888
Q ss_pred e-CCCCCCc
Q 023354 200 D-VSGGDKI 207 (283)
Q Consensus 200 D-pt~g~~l 207 (283)
| |+++.|.
T Consensus 166 DEPt~~LD~ 174 (221)
T TIGR02211 166 DEPTGNLDN 174 (221)
T ss_pred eCCCCcCCH
Confidence 8 9998764
No 137
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.89 E-value=1.6e-22 Score=180.87 Aligned_cols=171 Identities=15% Similarity=0.111 Sum_probs=120.4
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-------
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------- 139 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------- 139 (283)
.+.+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 357889999854 9999999999999999999999999987 9999998877543333444579999997521
Q ss_pred ---HHHhCCC-C-CCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-
Q 023354 140 ---AVETGGC-P-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR- 209 (283)
Q Consensus 140 ---~i~~~g~-~-~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~- 209 (283)
.+.+... . .....+....+.+.++.++.. ...+..+.+ |+||+||++||++++ +|.|+++| |+++.|...
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 185 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence 1111100 0 011111222445677777663 444555556 999999999999998 58888888 999865321
Q ss_pred ------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 210 ------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 210 ------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+.+.++ .+||++++++.|++...|+..+.+
T Consensus 186 ~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 186 SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 112221 579999999999998877665544
No 138
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.9e-23 Score=179.16 Aligned_cols=161 Identities=18% Similarity=0.133 Sum_probs=113.7
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------- 139 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------- 139 (283)
+.+++++|..+ | +++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|++..
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCcccccCCHHH
Confidence 57888888844 8 99999999999999999999999987 99999888776544 5567789999998631
Q ss_pred HHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh-----
Q 023354 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK----- 210 (283)
Q Consensus 140 ~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~----- 210 (283)
.+.+.... .....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|....
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 171 (211)
T cd03264 92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRN 171 (211)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 11111000 001111122345567777666656666666 999999999999998 58888887 9999764311
Q ss_pred ----c--CCcc-----------cccCEEEEEcCCccccc
Q 023354 211 ----G--GPGI-----------TQADLLVINKTDLASAI 232 (283)
Q Consensus 211 ----~--~~~i-----------~~ad~ivi~K~g~i~~~ 232 (283)
. ..++ .+||++++++.|.+.+.
T Consensus 172 ~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 172 LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 0 1111 56888888888887653
No 139
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.89 E-value=1.2e-22 Score=177.17 Aligned_cols=174 Identities=17% Similarity=0.116 Sum_probs=117.3
Q ss_pred ccCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhc
Q 023354 58 PIYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRN 130 (283)
Q Consensus 58 ~~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~i 130 (283)
.++.+.|.... .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+. ..+++.+
T Consensus 5 ~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 84 (228)
T cd03257 5 KNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEI 84 (228)
T ss_pred EeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccE
Confidence 34455554321 25788999985 59999999999999999999999999987 999999988765442 3456789
Q ss_pred cccCCchHH----------HHHhCCCCCC-ChH-HHHHH-HHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354 131 GALPEERIR----------AVETGGCPHA-AIR-EDISI-NLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 131 g~v~q~~~~----------~i~~~g~~~~-~~~-~~~~~-~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~ 194 (283)
+|++|++.. .+.++..... ... ..... ..+.++.+... ...+..+.+ |+||+||+.+|++++ +|
T Consensus 85 ~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 164 (228)
T cd03257 85 QMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNP 164 (228)
T ss_pred EEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCC
Confidence 999998621 1111100000 111 11111 12556666653 345566666 999999999999998 48
Q ss_pred cEEEEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccc
Q 023354 195 IIYIID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASA 231 (283)
Q Consensus 195 ~l~llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~ 231 (283)
.++++| |+++.|... +.+.++ .+||++++++.|++..
T Consensus 165 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 165 KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 888888 999865321 112221 4789999998888765
No 140
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=6.5e-23 Score=180.44 Aligned_cols=170 Identities=18% Similarity=0.145 Sum_probs=122.3
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC--HHHHHHhccccCCchH-------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI------- 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~------- 138 (283)
..+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.++|++|++.
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 4788999984 59999999999999999999999999987 99999988775432 2345667999998753
Q ss_pred -HHHHhCCCC--CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---
Q 023354 139 -RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR--- 209 (283)
Q Consensus 139 -~~i~~~g~~--~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~--- 209 (283)
+.+.++... .....+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 111121110 011112223455677777766666666666 999999999999998 58888888 999875421
Q ss_pred ---------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 210 ---------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 210 ---------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+.+.++ .+||++++++.|++.+.|+..+.+
T Consensus 175 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 175 VLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 112221 579999999999999887766544
No 141
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.89 E-value=1.6e-22 Score=179.95 Aligned_cols=183 Identities=19% Similarity=0.153 Sum_probs=126.4
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec-----CCCCCHHHH-
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF- 126 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d-----~~~~~~~~~- 126 (283)
+...++.+.|.. ...+.+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+ +.......+
T Consensus 7 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 7 LSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred EEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 445566666643 35788899985 59999999999999999999999999987 999999887 554444332
Q ss_pred ---HHhccccCCchHH----------HHHhC--CCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHH
Q 023354 127 ---LMRNGALPEERIR----------AVETG--GCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSR 189 (283)
Q Consensus 127 ---~~~ig~v~q~~~~----------~i~~~--g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~ 189 (283)
++.++|++|++.. .+... ........+....+.+.++.+.... ..+..+.+ |+||+||++|||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 3469999998621 11100 0000011111223456677776643 45566666 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 190 ELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+++ +|.|+++| |+++.|.. .+.+.++ .+||++++++.|++.+.|++.+.+
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 998 58888888 99986532 1112221 579999999999999888766544
No 142
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.88 E-value=1.6e-22 Score=178.12 Aligned_cols=180 Identities=17% Similarity=0.050 Sum_probs=126.7
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhccccC
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALP 134 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~ 134 (283)
.+..+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......+. ++.++|++
T Consensus 6 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 83 (242)
T TIGR03411 6 EGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKF 83 (242)
T ss_pred EeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEec
Confidence 344445543 35788999985 59999999999999999999999999987 999999887765554433 34699999
Q ss_pred CchH--------HHHHhCCCCCC---------ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-Cc
Q 023354 135 EERI--------RAVETGGCPHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YI 195 (283)
Q Consensus 135 q~~~--------~~i~~~g~~~~---------~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~ 195 (283)
|++. +.+.++..... ........+.+.++.++.....+..+.+ |+||+||+++|++++. |.
T Consensus 84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~ 163 (242)
T TIGR03411 84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPK 163 (242)
T ss_pred cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8753 12222111000 0011223455677777766666666666 9999999999999994 88
Q ss_pred EEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 196 IYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 196 l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
++++| |+++.|.... ...++ .+||++++++.|++...++..+.+
T Consensus 164 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 164 LLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred EEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 88888 9999764211 01121 579999999999999888766554
No 143
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.88 E-value=1e-22 Score=200.15 Aligned_cols=188 Identities=17% Similarity=0.175 Sum_probs=136.9
Q ss_pred CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.++++.|+....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus 311 ~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 311 RGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred CCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 3457788889998866667899999984 59999999999999999999999999997 999999999888888888999
Q ss_pred ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
++|++|++..+ +...+.+..+ .+.+..+.+ .+.++ ....+++..+.+ ||||+||+++||+++ +
T Consensus 391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 391 LAVVSQTPFLFSDTVANNIALGRPDAT-QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred eEEEccCCeeccccHHHHHhcCCCCCC-HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999987422 2222223222 222222111 11111 123455665554 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|.++++| |+++.|...+ .+.+ +..||+|++++.|++.+.|+..+.+.
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 7777777 9998653211 1111 36799999999999999998766653
No 144
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=180.05 Aligned_cols=180 Identities=16% Similarity=0.082 Sum_probs=125.2
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCCCCHHHHHHhc
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~~~~~~~~~~i 130 (283)
.++...|.. ...+++++|.. +|++++|+||||||||||+++|+|+++| +|+|.+.+.++.......+++.+
T Consensus 7 ~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 84 (250)
T PRK14247 7 RDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRV 84 (250)
T ss_pred EeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccE
Confidence 344444432 35788999984 5999999999999999999999999873 49999999888665555667789
Q ss_pred cccCCchH--------HHHHhCCCCCC---ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354 131 GALPEERI--------RAVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 131 g~v~q~~~--------~~i~~~g~~~~---~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~-~ 193 (283)
||++|++. +.+.++..... ...+....+.+.++.+++. ...+..+.+ |+||+||+++|++++ +
T Consensus 85 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 164 (250)
T PRK14247 85 QMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQ 164 (250)
T ss_pred EEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999863 11111110000 1111122345566666543 234666666 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 194 YIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
|.++++| |+++.|.... .+.+ ...||++++++.|++.+.|+..+.+
T Consensus 165 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 165 PEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 8888888 9998653211 1111 1579999999999998888776654
No 145
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.7e-23 Score=187.56 Aligned_cols=172 Identities=12% Similarity=0.072 Sum_probs=123.5
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc----CC-CcEEEEeecCCCCCHHHHH----HhccccCCchH
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR----DK-YSLAAVTNDIFTKEDGEFL----MRNGALPEERI 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~----~~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~ 138 (283)
..++++++|.. +|++++|+|+||||||||+++|+|+++ ++ |+|.+.+.++......+++ +.++|+||++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 35789999985 599999999999999999999999986 35 9999999888766554432 36999999863
Q ss_pred HH----------HHh--CCCCC-C----ChHHHHHHHHHHHHHccccc---cCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354 139 RA----------VET--GGCPH-A----AIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYII 196 (283)
Q Consensus 139 ~~----------i~~--~g~~~-~----~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-SgGq~q~~~ia~al~-~~~l 196 (283)
.. +.. .+... . ...+....+.+.|+.+++.. ..+..+.+ ||||+||+.||++|+ +|.|
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l 179 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence 11 110 01000 0 00122234567788877653 23555666 999999999999998 5888
Q ss_pred EEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 197 YIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 197 ~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|+| |++++|.. ++.+.++ .+||+|++++.|++++.|+..+++.
T Consensus 180 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~ 248 (330)
T PRK15093 180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248 (330)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8888 99987532 1112221 6799999999999999888777654
No 146
>PRK10908 cell division protein FtsE; Provisional
Probab=99.88 E-value=1.4e-22 Score=176.38 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=117.8
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhcccc
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGAL 133 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v 133 (283)
++...|+. ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|+
T Consensus 6 ~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~ 84 (222)
T PRK10908 6 HVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMI 84 (222)
T ss_pred eeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEE
Confidence 34444432 235788899985 59999999999999999999999999987 9999998887654432 256789999
Q ss_pred CCchHH--------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354 134 PEERIR--------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (283)
Q Consensus 134 ~q~~~~--------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p 201 (283)
+|++.. .+.++.... ....+....+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 85 FQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred ecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 998631 111111000 11111122344567777666555666666 999999999999998 58888888 9
Q ss_pred CCCCCchhh------------cCCcc-----------cccCEEEEEcCCcccc
Q 023354 202 SGGDKIPRK------------GGPGI-----------TQADLLVINKTDLASA 231 (283)
Q Consensus 202 t~g~~l~~~------------~~~~i-----------~~ad~ivi~K~g~i~~ 231 (283)
+++.|.... .+.++ ..||++++++.|++..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 998764211 11111 4678888888887654
No 147
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=1.2e-22 Score=198.62 Aligned_cols=185 Identities=18% Similarity=0.158 Sum_probs=134.7
Q ss_pred CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+.+.+.++++.|+....+.+++.+|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 4578889999998766678999999855 9999999999999999999999999987 9999999999888888888999
Q ss_pred cccCCchHHH-------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 131 GALPEERIRA-------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 131 g~v~q~~~~~-------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
+|+||++..+ +..+. +..+ .+.+..+.+ .+.++. ...+++..+.+ ||||+||+++||++. +
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~-~~~~-~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFG-ENAD-PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred EEecCCcccccccHHHHHhccC-CCCC-HHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999987422 22222 2122 122211111 122221 12345555554 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchh----------h--cCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 194 YIIYIID-VSGGDKIPR----------K--GGPG----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~----------~--~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
|.++++| ||++.|... . .+.+ +..||+|++++.|++.+.|+..+.+
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 7777777 999865321 1 1122 2679999999999999988876543
No 148
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.88 E-value=1.3e-22 Score=181.26 Aligned_cols=171 Identities=16% Similarity=0.122 Sum_probs=122.2
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchHH-H--
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR-A-- 140 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~-~-- 140 (283)
...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++.. +
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 35789999985 59999999999999999999999999987 9999998887654433 245679999998521 1
Q ss_pred -------HHhCCC-CC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 141 -------VETGGC-PH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 141 -------i~~~g~-~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
+.+... .. .........+.+.++.++.. ...+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 111000 00 00111223445677777664 345666666 999999999999998 58888888 9998753
Q ss_pred h-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 208 P-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 208 ~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
. ...+.++ .+||++++++.|++...|+..+.+
T Consensus 184 ~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 2 1112221 579999999999999888876665
No 149
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.88 E-value=2.2e-22 Score=173.94 Aligned_cols=139 Identities=18% Similarity=0.137 Sum_probs=100.9
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchHHH---
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIRA--- 140 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~~--- 140 (283)
...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++..+
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence 35788999984 59999999999999999999999999887 9999998887654432 3566799999986311
Q ss_pred -----HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 141 -----VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 141 -----i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
+.++.... .........+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~ 170 (214)
T TIGR02673 95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCH
Confidence 11110000 01111122445667777766555666666 999999999999998 58888888 9999764
No 150
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.88 E-value=6.6e-23 Score=199.77 Aligned_cols=154 Identities=22% Similarity=0.215 Sum_probs=117.7
Q ss_pred CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.+++|.|+++. +.+++++|.. +|++++|+||+|||||||+++|+|+++|+ |+|.+++.++... ..++++.
T Consensus 332 ~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~ 409 (529)
T TIGR02868 332 KPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRR 409 (529)
T ss_pred CceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhh
Confidence 34588999999997643 5899999985 59999999999999999999999999998 9999999999998 8899999
Q ss_pred ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
++||||++..+ +...+.+..+ .+++..+.+ .+.++. ..+++|..++| ||||+||+++||++. +
T Consensus 410 i~~V~Q~~~lF~~TI~eNI~~g~~~~~-~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~ 488 (529)
T TIGR02868 410 ISVFAQDAHLFDTTVRDNLRLGRPDAT-DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD 488 (529)
T ss_pred eEEEccCcccccccHHHHHhccCCCCC-HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence 99999998522 2222333322 222222222 122221 24577888876 999999999999998 4
Q ss_pred CcEEEEe-CCCCCCch
Q 023354 194 YIIYIID-VSGGDKIP 208 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~ 208 (283)
|.|+++| ||++.|..
T Consensus 489 ~~iliLDE~TSaLD~~ 504 (529)
T TIGR02868 489 APILLLDEPTEHLDAG 504 (529)
T ss_pred CCEEEEeCCcccCCHH
Confidence 7777776 99987653
No 151
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.88 E-value=2.2e-22 Score=175.71 Aligned_cols=177 Identities=15% Similarity=0.120 Sum_probs=120.5
Q ss_pred cccccCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---H-
Q 023354 55 SHEPIYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F- 126 (283)
Q Consensus 55 ~~~~~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~- 126 (283)
+...+.+..|.... .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+... .
T Consensus 7 l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 86 (228)
T PRK10584 7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLR 86 (228)
T ss_pred EEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHH
Confidence 34445555555432 24788999985 59999999999999999999999999987 99999888876654432 2
Q ss_pred HHhccccCCchH--------HHHHhCC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 127 LMRNGALPEERI--------RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 127 ~~~ig~v~q~~~--------~~i~~~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
.+.++|++|++. +.+.++. .......+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.
T Consensus 87 ~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~ 166 (228)
T PRK10584 87 AKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD 166 (228)
T ss_pred hheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 246999998753 1111111 00011112223455677777776666666666 999999999999998 588
Q ss_pred EEEEe-CCCCCCchh-------------hcCCc----------ccccCEEEEEcCCcccc
Q 023354 196 IYIID-VSGGDKIPR-------------KGGPG----------ITQADLLVINKTDLASA 231 (283)
Q Consensus 196 l~llD-pt~g~~l~~-------------~~~~~----------i~~ad~ivi~K~g~i~~ 231 (283)
++++| |+++.|... +.+.+ +..||++++++.|++.+
T Consensus 167 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 88888 999975321 11111 14578888887777653
No 152
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2e-22 Score=178.73 Aligned_cols=184 Identities=14% Similarity=0.070 Sum_probs=128.0
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH-Hhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~-~~ig 131 (283)
+...++.+.|.. .+.+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..... ..++
T Consensus 6 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 6 LSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred EEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 344455555532 35788999985 59999999999999999999999999987 9999999887665544433 3588
Q ss_pred ccCCchH--------HHHHhCCCC-----------C-----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHH
Q 023354 132 ALPEERI--------RAVETGGCP-----------H-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAAN 186 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~-----------~-----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ 186 (283)
|++|++. +.+.++... . ....+....+.+.++.++.....+..+.+ |+||+||+.
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 163 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE 163 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH
Confidence 8898753 112221100 0 00011122344567777666666677777 999999999
Q ss_pred HHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 187 FSRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 187 ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
||++++ +|.++++| |+++.|.. ++.+.++ .+||++++++.|++...|+..+.+.
T Consensus 164 la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 999998 58888888 99997532 1112221 6799999999999998887766543
No 153
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.88 E-value=1.4e-22 Score=175.08 Aligned_cols=139 Identities=19% Similarity=0.119 Sum_probs=100.5
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhccccCCchHHH---
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERIRA--- 140 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~~~--- 140 (283)
...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|++|++..+
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 35788999984 59999999999999999999999999987 999998887765433 23566799999986311
Q ss_pred -----HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 141 -----VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 141 -----i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
+.++.... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus 94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 169 (214)
T cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence 11110000 01111122345567777666555666666 999999999999998 58888888 9998764
No 154
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.88 E-value=1.2e-22 Score=199.84 Aligned_cols=183 Identities=21% Similarity=0.258 Sum_probs=136.3
Q ss_pred CccccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 53 PHSHEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
+.+.+.++++.|+... .+.+++++|.. +|++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 4578889999998654 56899999985 59999999999999999999999999987 999999999988888889999
Q ss_pred ccccCCchH------HHHHhCCCCCCChHHHHHHHHHHHHHcc-------ccccCCCcccC-----CchHHHHHHHHHHh
Q 023354 130 NGALPEERI------RAVETGGCPHAAIREDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSREL 191 (283)
Q Consensus 130 ig~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~~l~~l~-------~~~~~d~~i~e-----SgGq~q~~~ia~al 191 (283)
++|+||++. ..+.+.+.+..+ .+.+. +.++..+ ...+.+..+.| ||||+||+++||++
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~-~~~~~---~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRPDAT-DEEVE---AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCCCCC-HHHHH---HHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 999999974 222232333322 22222 2222221 12345666655 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhhc-----------CCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 192 A-DYIIYIID-VSGGDKIPRKG-----------GPG----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~~-----------~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
. ++.++++| ||++.|...+. ..+ +..||+++.+..|++.+.|+..+.+
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 8 57666666 99986532110 111 3679999999999999988876554
No 155
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.88 E-value=4.8e-23 Score=177.38 Aligned_cols=159 Identities=17% Similarity=0.050 Sum_probs=113.4
Q ss_pred CCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (283)
Q Consensus 69 ~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (283)
.+.+++++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ..+++.++|++|++.
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCccCccCcHH
Confidence 3578899998 459999999999999999999999999987 9999988776543 345677999999753
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh-----
Q 023354 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK----- 210 (283)
Q Consensus 139 ~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~----- 210 (283)
+.+.+....... ....+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|...+
T Consensus 91 e~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 167 (208)
T cd03268 91 ENLRLLARLLGI---RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRE 167 (208)
T ss_pred HHHHHHHHhcCC---cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence 111111110000 112334566777665556666666 999999999999999 58888888 9998764211
Q ss_pred -------cCCcc-----------cccCEEEEEcCCccccc
Q 023354 211 -------GGPGI-----------TQADLLVINKTDLASAI 232 (283)
Q Consensus 211 -------~~~~i-----------~~ad~ivi~K~g~i~~~ 232 (283)
.+.++ .+||++++++.|++.+.
T Consensus 168 ~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 168 LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 11221 56889999988887653
No 156
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.88 E-value=1.2e-22 Score=179.42 Aligned_cols=170 Identities=16% Similarity=0.127 Sum_probs=119.9
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCCC--CHHHHHHhccccCCchH--
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-- 138 (283)
..+.+++|.. +|++++|+|+||||||||+++|+|+++| +|+|.+.+.++... ....+++.++|+||++.
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4788899985 5999999999999999999999999975 58999988877542 23445678999999753
Q ss_pred -----HHHHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 139 -----RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 139 -----~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
+.+.++..... ...+....+...++.++.. ...+..+.+ |+||+||+.+|++++ +|.++++| |+++
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 174 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11111100000 1112222445567777665 445666666 999999999999998 58888888 9998
Q ss_pred CCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 205 DKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 205 ~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.|.... ...+ ..+||++++++.|++...|++.+.+
T Consensus 175 LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 175 LDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred CCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 653210 0112 1679999999999998888766554
No 157
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.88 E-value=2.1e-22 Score=173.90 Aligned_cols=138 Identities=18% Similarity=0.160 Sum_probs=100.4
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhccccCCchHH------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERIR------ 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~~------ 139 (283)
..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. .....+++.++|++|++..
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence 4788899985 59999999999999999999999999987 999999887743 2334556789999997631
Q ss_pred --HHHhCCC--CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 140 --AVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 140 --~i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
.+.++.. ......+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~ 168 (213)
T cd03262 94 LENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168 (213)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 1111100 0001111222445567777666556666666 999999999999998 58888888 9999764
No 158
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.88 E-value=2.1e-22 Score=176.03 Aligned_cols=167 Identities=20% Similarity=0.127 Sum_probs=115.9
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhccccCCchHHH------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERIRA------ 140 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~~~------ 140 (283)
+.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... .++.++|++|++..+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 5788999985 59999999999999999999999999987 99999988876655443 345799999985311
Q ss_pred --HHhCCCCCCChHHHHHHHHHHHHHcc-ccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354 141 --VETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----- 209 (283)
Q Consensus 141 --i~~~g~~~~~~~~~~~~~~~~l~~l~-~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----- 209 (283)
+.++......... ....+.++.+. .....+..+.+ |+||+||+++|++++ +|.++++| |+++.|...
T Consensus 94 ~~l~~~~~~~~~~~~--~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~ 171 (230)
T TIGR03410 94 ENLLTGLAALPRRSR--KIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171 (230)
T ss_pred HHHHHHHHhcCcchH--HHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 1111111100000 11223333332 23334555556 999999999999998 58888888 999875321
Q ss_pred --------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 210 --------KGGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 210 --------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+.+.++ .+||++++++.|++...|+..++
T Consensus 172 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 172 RVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 112221 47999999999999888776654
No 159
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.4e-22 Score=186.26 Aligned_cols=188 Identities=15% Similarity=0.100 Sum_probs=130.5
Q ss_pred CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc-----C-CCcEEEEeecCCCC--CH
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR-----D-KYSLAAVTNDIFTK--ED 123 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~-----~-~g~i~i~~~d~~~~--~~ 123 (283)
+.+.+.++++.|.....+.+++++|..+ |++++|+|+||||||||+++|+|++. | .|+|.+++.++... ..
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5677888888887555568999999965 99999999999999999999999985 3 49999999988632 23
Q ss_pred HHHHHhccccCCchHH-------HHHhCC-CCCCChHHHHH-HHHHHHHHccccc----cCCCcccC-CchHHHHHHHHH
Q 023354 124 GEFLMRNGALPEERIR-------AVETGG-CPHAAIREDIS-INLGPLEELSNLF----KADLLLCE-SGGDNLAANFSR 189 (283)
Q Consensus 124 ~~~~~~ig~v~q~~~~-------~i~~~g-~~~~~~~~~~~-~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~ 189 (283)
..+++.++|+||++.. .+.++. +......+... .+...++.+.+.. ..+..... |+||+||++|||
T Consensus 159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence 4567789999998742 122211 10011111111 2334455544321 22333333 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+++ +|.|+|+| |+++.|.... ...+ .++||+|++++.|++.+.|++.+++.
T Consensus 239 Al~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 239 AIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 998 57777777 9998653210 0111 15699999999999999999988765
No 160
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=178.65 Aligned_cols=183 Identities=13% Similarity=0.060 Sum_probs=124.5
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCCC--CHHH
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGE 125 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~~--~~~~ 125 (283)
+...+..+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++| +|+|.+.+.++... ....
T Consensus 8 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 8 IETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred EEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 445556555543 35788999985 4999999999999999999999999986 49999988876432 2345
Q ss_pred HHHhccccCCchHH-------HHHhCCCCCCC-hH-HHHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHHh
Q 023354 126 FLMRNGALPEERIR-------AVETGGCPHAA-IR-EDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 126 ~~~~ig~v~q~~~~-------~i~~~g~~~~~-~~-~~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
+++.++|++|++.. .+.++...... .. .....+.+.++.+.. ....+..+.+ |+||+||++|||++
T Consensus 86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral 165 (254)
T PRK14273 86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165 (254)
T ss_pred HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 56789999998531 12221111100 11 111233445555543 2334555666 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+ +|.++++| |+++.|.... ...+ ..+||++++++.|++...|+..+.+
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 166 AIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 58888888 9998653211 0111 1679999999999999888776654
No 161
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.88 E-value=2.4e-22 Score=178.07 Aligned_cols=179 Identities=16% Similarity=0.118 Sum_probs=123.9
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-------------H
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------------D 123 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-------------~ 123 (283)
++.+.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+ .
T Consensus 5 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~ 82 (252)
T TIGR03005 5 DVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL 82 (252)
T ss_pred EEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHH
Confidence 34444432 35788999985 59999999999999999999999999987 99999888775321 1
Q ss_pred HHHHHhccccCCchH--------HHHHhCCC--CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc
Q 023354 124 GEFLMRNGALPEERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA 192 (283)
Q Consensus 124 ~~~~~~ig~v~q~~~--------~~i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~ 192 (283)
..+++.++|++|++. +.+.++.. ...........+.+.++.++.....+..+.+ |+||+||+++|++++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 162 (252)
T TIGR03005 83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALA 162 (252)
T ss_pred HHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHH
Confidence 245677999998753 11111100 0001111122345667777666555666666 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 193 -DYIIYIID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+|.++++| |+++.|... +.+.++ .+||++++++.|++.+.|+..+.+
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 58888888 999865321 112221 579999999999998877765543
No 162
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.5e-22 Score=179.61 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=128.7
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc-C----C-CcEEEEeecCCCCCHHHH----HHhccccCCch
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR-D----K-YSLAAVTNDIFTKEDGEF----LMRNGALPEER 137 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~-~----~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~ 137 (283)
..++++++|..+ |++++|+|.+||||||+.++|+|+++ + . |+|.+.+.++...+..++ .+.|+++||++
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 468899999855 99999999999999999999999997 3 2 789999999888876543 33699999997
Q ss_pred HHH-----------HHhCCCCC-C-ChHHHHHHHHHHHHHcccccc---CCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 138 IRA-----------VETGGCPH-A-AIREDISINLGPLEELSNLFK---ADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 138 ~~~-----------i~~~g~~~-~-~~~~~~~~~~~~l~~l~~~~~---~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
... .+.-.... . ...+....+.+.|+.+++... .+.+.-| ||||+||+.||.+++ +|.+++.
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA 177 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence 411 11100000 0 122334466778888876543 3555555 999999999999998 6999998
Q ss_pred e-CCCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 200 D-VSGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 200 D-pt~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
| ||+++|. +++.+.. .++||+|+||+.|++++.|+..+++.
T Consensus 178 DEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 178 DEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhc
Confidence 8 9998652 2223332 28999999999999999999888875
No 163
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.4e-22 Score=176.00 Aligned_cols=169 Identities=19% Similarity=0.210 Sum_probs=115.7
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------H
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~ 139 (283)
...+++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++. +
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 94 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE 94 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence 35788999984 59999999999999999999999999987 999998887765555566778999999853 1
Q ss_pred HHHhCCCCCCChHHHHHH------HHHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 140 AVETGGCPHAAIREDISI------NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 140 ~i~~~g~~~~~~~~~~~~------~~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
.+.+... ... ...... ..+.++.+ ......+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus 95 nl~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~ 172 (234)
T cd03251 95 NIAYGRP-GAT-REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172 (234)
T ss_pred HhhccCC-CCC-HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 1222111 111 111111 11223332 222223444445 999999999999999 48788887 99987532
Q ss_pred hh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 209 RK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 209 ~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.. .+.+ +..||++++++.|++...++..+.+
T Consensus 173 ~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 173 SERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELL 224 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHH
Confidence 11 1111 2459999999999998877665543
No 164
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.88 E-value=2.5e-22 Score=186.49 Aligned_cols=166 Identities=20% Similarity=0.138 Sum_probs=120.9
Q ss_pred cccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC----HHHHHHhccccCCchH--------H
Q 023354 74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R 139 (283)
Q Consensus 74 ~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~--------~ 139 (283)
+++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.... ....++.++|++|++. +
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 677774 59999999999999999999999999987 99999988775321 1234567999999753 1
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------
Q 023354 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------- 209 (283)
Q Consensus 140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------- 209 (283)
.+.++.. .....+....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++| |+++.|...
T Consensus 95 nl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 173 (354)
T TIGR02142 95 NLRYGMK-RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173 (354)
T ss_pred HHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 1222211 111111122455677888777767777777 999999999999998 58888888 999875321
Q ss_pred ------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 210 ------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 210 ------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.+.+ ..+||++++++.|++.+.|++.+.+.
T Consensus 174 L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 11222 15799999999999998888777654
No 165
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.3e-22 Score=176.18 Aligned_cols=160 Identities=17% Similarity=0.078 Sum_probs=112.9
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------- 139 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------- 139 (283)
.+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. .++.++|++|++..
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCCHH
Confidence 35788999984 59999999999999999999999999887 999998877642 24578999987531
Q ss_pred -HHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354 140 -AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----- 209 (283)
Q Consensus 140 -~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----- 209 (283)
.+.++... ..........+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...
T Consensus 92 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~ 171 (220)
T cd03293 92 DNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHH
Confidence 11111000 001111223455677777766666666666 999999999999998 58888888 999975321
Q ss_pred --------hcCCcc-----------cccCEEEEEc--CCcccccC
Q 023354 210 --------KGGPGI-----------TQADLLVINK--TDLASAIG 233 (283)
Q Consensus 210 --------~~~~~i-----------~~ad~ivi~K--~g~i~~~g 233 (283)
+.+.++ .+||++++++ .|++.+.+
T Consensus 172 ~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 172 EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred HHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence 112221 5789999988 68876643
No 166
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.9e-22 Score=185.07 Aligned_cols=163 Identities=19% Similarity=0.127 Sum_probs=120.3
Q ss_pred cccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC----HHHHHHhccccCCchHHH-------
Q 023354 74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIRA------- 140 (283)
Q Consensus 74 ~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~~------- 140 (283)
+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ....++.++|++|++..+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 677774 59999999999999999999999999987 99999888765321 223456899999985311
Q ss_pred -HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch--------
Q 023354 141 -VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-------- 208 (283)
Q Consensus 141 -i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------- 208 (283)
+.++. . ......+.+.++.+++....+..+.+ |+||+||++|||+++ +|.++++| |+++.|..
T Consensus 96 nl~~~~-~----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~ 170 (352)
T PRK11144 96 NLRYGM-A----KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170 (352)
T ss_pred HHHhhh-h----hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 11111 0 01112345677777776666777777 999999999999998 58888888 99986532
Q ss_pred -----hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 209 -----RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 209 -----~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
++.+.+ ..+||++++++.|++...|++.+++..
T Consensus 171 L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 171 LERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 111222 167999999999999999988887764
No 167
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=3.9e-22 Score=190.09 Aligned_cols=172 Identities=20% Similarity=0.122 Sum_probs=126.6
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhccccCCchHH-----
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERIR----- 139 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~~----- 139 (283)
..++++++|..+ ||+++|+|.+|||||||.++|+|+++|+ |.|.+++.++.- ......++++-++||++..
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence 357899999955 9999999999999999999999999998 999999987221 1233466788899998751
Q ss_pred -----HHHhCCC-CCC-ChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC--
Q 023354 140 -----AVETGGC-PHA-AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK-- 206 (283)
Q Consensus 140 -----~i~~~g~-~~~-~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~-- 206 (283)
.+.-... .+. ...+....+.+.|+.+++.. ..++...| ||||+||++|||+|+ +|.+++.| |++.+|
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 1110000 000 11222234566777777665 46777888 999999999999998 69999988 888754
Q ss_pred -----------chhhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 207 -----------IPRKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 207 -----------l~~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++++.+.++ ..||+|++++.|++++.|+..+++.
T Consensus 464 vqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 464 VQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 334433332 7899999999999999997777665
No 168
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=178.55 Aligned_cols=181 Identities=15% Similarity=0.082 Sum_probs=122.2
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCC--CCCHHHHH
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIF--TKEDGEFL 127 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~--~~~~~~~~ 127 (283)
..++...|.. .+.+++++|.. +|++++|+||||||||||+++|+|+++| .|+|.+.+.++. ......++
T Consensus 7 ~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (253)
T PRK14267 7 TVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84 (253)
T ss_pred EEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence 3344444432 35789999985 5999999999999999999999999886 599999988875 23344566
Q ss_pred HhccccCCchHH--------HHHhCCCCCC---ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354 128 MRNGALPEERIR--------AVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 128 ~~ig~v~q~~~~--------~i~~~g~~~~---~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
+.++|++|++.. .+.++..... ........+.+.++.++.. ...+..+.+ |+||+||++||+++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL 164 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHH
Confidence 789999997531 1111110000 1111112334455555432 224455555 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+ +|.++++| |+++.|.... ...+ ..+||++++++.|++.+.|+..+.+
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 58888888 9998653211 1112 1579999999999999888776654
No 169
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.3e-22 Score=176.15 Aligned_cols=179 Identities=17% Similarity=0.108 Sum_probs=124.0
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC------CCHHHHHH
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLM 128 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~------~~~~~~~~ 128 (283)
+.++.+.|.. ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ......++
T Consensus 5 ~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 5 LNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred EEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh
Confidence 3344555532 35788999985 59999999999999999999999999987 999999887631 11234566
Q ss_pred hccccCCchHH--------HHHhCCC--CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354 129 RNGALPEERIR--------AVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII 196 (283)
Q Consensus 129 ~ig~v~q~~~~--------~i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l 196 (283)
.++|++|++.. .+....+ ......+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.+
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 162 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred heEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 89999997531 1111100 0011111222445667777666556666666 999999999999998 5888
Q ss_pred EEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHH
Q 023354 197 YIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLA 237 (283)
Q Consensus 197 ~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e 237 (283)
+++| |+++.|... +.+.++ .+||++++++.|++...|+..+
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 8888 999875321 112221 5799999999999988776544
No 170
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.6e-22 Score=174.22 Aligned_cols=165 Identities=18% Similarity=0.096 Sum_probs=119.1
Q ss_pred cccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHh
Q 023354 74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (283)
Q Consensus 74 ~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~ 143 (283)
+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+.++|++|++. +.+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEecccccccCCcHHHHHhc
Confidence 677874 59999999999999999999999999987 999999887754333 2457999998753 12222
Q ss_pred CCCCCCC-hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----------
Q 023354 144 GGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------- 209 (283)
Q Consensus 144 ~g~~~~~-~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------- 209 (283)
+..+... .......+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 2111111 112223456677777776666777777 999999999999998 58888888 999875421
Q ss_pred ---hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 210 ---KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 210 ---~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.+.++ .+||++++++.|++.+.|+..+.+.
T Consensus 175 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 175 VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 112221 5799999999999998887665554
No 171
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.4e-22 Score=193.22 Aligned_cols=185 Identities=15% Similarity=0.064 Sum_probs=131.7
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig 131 (283)
+...+.+..|.. ...+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+.... ++.++
T Consensus 6 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 6 ISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred EEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 344455555532 357899999855 9999999999999999999999999987 999999888766554433 34699
Q ss_pred ccCCchH--------HHHHhCCCCC----C----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354 132 ALPEERI--------RAVETGGCPH----A----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~~----~----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~ 193 (283)
|++|++. +.+.++.... . ...+....+.+.++.+++....+..+.+ |+||+||+.||++++ +
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~ 163 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 9999753 2222221111 0 0112223456678888777667777777 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhH
Q 023354 194 YIIYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
|.|+++| |+++.|... +.+.++ .+||++++++.|++...|++.+.+..
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (510)
T PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND 235 (510)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHH
Confidence 8888888 999976321 112221 67999999999999887776655443
No 172
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.88 E-value=2.8e-22 Score=193.66 Aligned_cols=182 Identities=11% Similarity=-0.013 Sum_probs=128.7
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (283)
..+.++.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++
T Consensus 6 ~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 83 (490)
T PRK10938 6 ISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83 (490)
T ss_pred EEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceec
Confidence 3445555543 34789999985 59999999999999999999999999987 99988776665444455566799999
Q ss_pred CchHHHHHhC--CCCCCChH-------HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354 135 EERIRAVETG--GCPHAAIR-------EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (283)
Q Consensus 135 q~~~~~i~~~--g~~~~~~~-------~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt 202 (283)
|++....... .....+.. .....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++| |+
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (490)
T PRK10938 84 QRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF 163 (490)
T ss_pred cCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 9753211000 00001111 1122455677888777667787877 999999999999998 58888888 99
Q ss_pred CCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 203 GGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 203 ~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.|... +.+.++ .+||++++++.|++...|+..+.+.
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 164 DGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9875321 112221 6799999999999988877665543
No 173
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.88 E-value=4e-22 Score=175.13 Aligned_cols=169 Identities=19% Similarity=0.202 Sum_probs=114.7
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------ 140 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------ 140 (283)
.+.+.+++|.. +|++++|+|+||||||||+++|+|+++|. |+|.+.+.++.......+++.++|++|++..+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence 35788999985 59999999999999999999999999987 99999988776555555667799999986421
Q ss_pred -HHhCCCCCCChHHHHHHH------HHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 141 -VETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 141 -i~~~g~~~~~~~~~~~~~------~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
+.++. .... ....... .+.+..+ ......+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus 96 ~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~ 173 (238)
T cd03249 96 NIRYGK-PDAT-DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173 (238)
T ss_pred HhhccC-CCCC-HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 11111 1111 1111111 1111222 111223344445 999999999999998 58888888 99987632
Q ss_pred h-----------hcCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 209 R-----------KGGPG----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 209 ~-----------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
. ..+.+ +..||++++++.|++.+.++..+..
T Consensus 174 ~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (238)
T cd03249 174 SEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM 225 (238)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 1 01111 2579999999999998877655443
No 174
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.1e-22 Score=174.00 Aligned_cols=179 Identities=20% Similarity=0.191 Sum_probs=117.7
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (283)
..+..+.|.. ....+++++|.. +|++++|+||||||||||+++|+|+++|. |+|.+.+.++...+...+++.++|++
T Consensus 5 ~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 83 (229)
T cd03254 5 FENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL 83 (229)
T ss_pred EEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEec
Confidence 3444455532 235788999985 49999999999999999999999999987 99999888776555556677899999
Q ss_pred CchHHH-------HHhCCCCCCChHHHHHHHH------HHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354 135 EERIRA-------VETGGCPHAAIREDISINL------GPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (283)
Q Consensus 135 q~~~~~-------i~~~g~~~~~~~~~~~~~~------~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ 197 (283)
|++..+ +.+. .... ....+.... ..++.+ ......+..+.+ |+||+||+.+|++++ +|.++
T Consensus 84 q~~~~~~~tv~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 84 QDTFLFSGTIMENIRLG-RPNA-TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred CCchhhhhHHHHHHhcc-CCCC-CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 986422 1111 1111 111111111 111111 111122333444 999999999999998 58888
Q ss_pred EEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHH
Q 023354 198 IID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 198 llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
++| |+++.|.... .+.+ +..||++++++.|++...++..+.
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 888 9998763211 1111 256899999999999876665443
No 175
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.5e-22 Score=183.92 Aligned_cols=191 Identities=20% Similarity=0.196 Sum_probs=147.1
Q ss_pred CCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354 50 GLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL 127 (283)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~ 127 (283)
...|...|..++|.|..++ +.+++.+|..+ |++++++|+.|+||||+++.|.+.+.++ |.|.+++.|+.......++
T Consensus 258 ~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR 336 (497)
T COG5265 258 VRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336 (497)
T ss_pred cccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHH
Confidence 6678899999999976654 77889999866 9999999999999999999999999987 9999999999988888899
Q ss_pred HhccccCCchHHHHHh------CCCCCCChHHHHHH-HHHHHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc-
Q 023354 128 MRNGALPEERIRAVET------GGCPHAAIREDISI-NLGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA- 192 (283)
Q Consensus 128 ~~ig~v~q~~~~~i~~------~g~~~~~~~~~~~~-~~~~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~- 192 (283)
+.||+|||+...++++ .|.+..+..+.... ....+..+ ...++++..++| |||+|||++|||.+.
T Consensus 337 ~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 337 RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred HHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 9999999998655543 23343333222221 11122222 135678888888 999999999999987
Q ss_pred CCcEEEEe-CCCCCCchhhc---------------------CCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354 193 DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 193 ~~~l~llD-pt~g~~l~~~~---------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+|.|+++| +|+.+|...+. ..++-.||.|++++.|++.+.|...+++..
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 58888888 77765432110 123567999999999999999998887653
No 176
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.7e-22 Score=194.52 Aligned_cols=183 Identities=10% Similarity=0.035 Sum_probs=130.6
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC--C-CcEEEEeecCCCCCHHHH-HHh
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEF-LMR 129 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~-g~i~i~~~d~~~~~~~~~-~~~ 129 (283)
+...++++.|. ....+++++|.. +|++++|+||||||||||+|+|+|+++| + |+|.+.+.++......+. ++.
T Consensus 6 l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 6 LEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred EEEeeeEEEeC--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 44455555553 235789999985 5999999999999999999999999986 5 999999988765544333 456
Q ss_pred ccccCCchH--------HHHHhCCCCC----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 130 NGALPEERI--------RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 130 ig~v~q~~~--------~~i~~~g~~~----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
+||++|++. +.+.++.... ....+....+.+.++.++.....+..+.+ |+||+||++||++++ +|.
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 163 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR 163 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999853 2222222111 01112223456678888776667777777 999999999999998 588
Q ss_pred EEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 196 IYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 196 l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
++|+| |+++.|... +.+.++ .+||++++++.|++...|+..+..
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 164 LLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 88888 999875321 112221 679999999999998877665543
No 177
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.7e-22 Score=176.33 Aligned_cols=180 Identities=12% Similarity=0.078 Sum_probs=123.6
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc---CC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~---~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
.++...|.. ...+.+++|.. +|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++.......+++.++|
T Consensus 6 ~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 83 (246)
T PRK14269 6 TNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGM 83 (246)
T ss_pred eeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEE
Confidence 344445542 35788999984 599999999999999999999999974 45 999999988866555566778999
Q ss_pred cCCchHH-------HHHhCCCCCC---ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354 133 LPEERIR-------AVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYII 196 (283)
Q Consensus 133 v~q~~~~-------~i~~~g~~~~---~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~-~~~l 196 (283)
+||++.. .+.++..... ........+.+.++.+... ...+..+.+ |+||+||+++||+++ +|.+
T Consensus 84 ~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 163 (246)
T PRK14269 84 VFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKL 163 (246)
T ss_pred EecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9998631 1111100000 0011112334556666552 223444455 999999999999998 5888
Q ss_pred EEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 197 YIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 197 ~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+++| |+++.|.... .+.+ ..+||++++++.|++.+.|+..+.+
T Consensus 164 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 164 LLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 8888 9998653211 1222 1679999999999999888776654
No 178
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=3.7e-22 Score=193.41 Aligned_cols=182 Identities=15% Similarity=0.109 Sum_probs=128.7
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig 131 (283)
+...+.+..|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++........ ++.++
T Consensus 5 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 5 LQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred EEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 334455555532 35788999985 49999999999999999999999999987 999999888754443333 45699
Q ss_pred ccCCchH--------HHHHhCCCCC---C--ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354 132 ALPEERI--------RAVETGGCPH---A--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII 196 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~~---~--~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l 196 (283)
|++|++. +.+.++.... . ...+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.+
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 162 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV 162 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999752 2222221111 0 1112223455678888777777777777 999999999999998 5888
Q ss_pred EEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 197 YIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 197 ~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+++| |+++.|... +.+.++ .+||+|++++.|++...++..+.
T Consensus 163 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 163 IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 8888 999876421 112221 68999999999999876665443
No 179
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.87 E-value=2.3e-22 Score=169.64 Aligned_cols=138 Identities=25% Similarity=0.314 Sum_probs=102.0
Q ss_pred CCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCC
Q 023354 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (283)
Q Consensus 69 ~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~ 146 (283)
...+++++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q----------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ----------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-----------
Confidence 3578888998 459999999999999999999999999987 999999888876666666677888877
Q ss_pred CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------------h
Q 023354 147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-------------K 210 (283)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-------------~ 210 (283)
.++.++.....+..+.+ |+||+||+++||+++ +|.++++| |+++.|... +
T Consensus 81 --------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~ 146 (180)
T cd03214 81 --------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146 (180)
T ss_pred --------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 12222222222233334 999999999999998 58888888 999865321 1
Q ss_pred cCCcc-----------cccCEEEEEcCCcccc
Q 023354 211 GGPGI-----------TQADLLVINKTDLASA 231 (283)
Q Consensus 211 ~~~~i-----------~~ad~ivi~K~g~i~~ 231 (283)
.+.++ +.||+++++..|.+..
T Consensus 147 ~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 147 RGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 01221 5688888888877654
No 180
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.2e-22 Score=175.23 Aligned_cols=158 Identities=20% Similarity=0.121 Sum_probs=110.3
Q ss_pred CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (283)
Q Consensus 70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~ 139 (283)
..+++++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ..++.++|++|++. +
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEeccCCcCCcCCcHHH
Confidence 478888988 459999999999999999999999999987 999998876532 34567999998752 1
Q ss_pred HHHhCC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh-----
Q 023354 140 AVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK----- 210 (283)
Q Consensus 140 ~i~~~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~----- 210 (283)
.+.+.. .......+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~ 169 (210)
T cd03269 90 QLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKD 169 (210)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 111110 00001111222445567777665555666666 999999999999998 58888888 9998764211
Q ss_pred -------cCCc-----------ccccCEEEEEcCCcccc
Q 023354 211 -------GGPG-----------ITQADLLVINKTDLASA 231 (283)
Q Consensus 211 -------~~~~-----------i~~ad~ivi~K~g~i~~ 231 (283)
.+.+ ..+||++++++.|++.+
T Consensus 170 ~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 170 VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 1111 15688888888887765
No 181
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3e-22 Score=177.52 Aligned_cols=185 Identities=14% Similarity=0.073 Sum_probs=123.8
Q ss_pred CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCC--CCH
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KED 123 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~--~~~ 123 (283)
+.+...++.+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|++. |+ |+|.+.+.++.. ...
T Consensus 5 ~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 5 PKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred cEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 34555666666643 35789999985 599999999999999999999999864 45 999999887753 223
Q ss_pred HHHHHhccccCCchH-------HHHHhCCCCC-C-ChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHH
Q 023354 124 GEFLMRNGALPEERI-------RAVETGGCPH-A-AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSR 189 (283)
Q Consensus 124 ~~~~~~ig~v~q~~~-------~~i~~~g~~~-~-~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~ 189 (283)
..+++.++|++|++. +.+.++.... . ........+.+.++.+++.. ..+..+.+ |+||+||+.+|+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 455678999999752 1111111000 0 11111223344555554421 23445555 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+++ +|.++++| |+++.|.... .+.++ ++||++++++.|++.+.|+..+.+
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 998 58888888 9998753211 11121 679999999999998877765543
No 182
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.87 E-value=6.8e-22 Score=188.47 Aligned_cols=173 Identities=19% Similarity=0.195 Sum_probs=130.7
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC-----CCcEEEEeecCCCCCHHHH----HHhccccCCchH
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD-----KYSLAAVTNDIFTKEDGEF----LMRNGALPEERI 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~ 138 (283)
..++++++|... ||++||+|.+||||||+.++|.|++++ +|+|.+.+.++...+..+. .++|+++||++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 458899999955 999999999999999999999999874 3899999998877765443 246999999974
Q ss_pred HH----------H-HhCCCCC-CChHHHHHHHHHHHHHccccccCCC--cccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354 139 RA----------V-ETGGCPH-AAIREDISINLGPLEELSNLFKADL--LLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (283)
Q Consensus 139 ~~----------i-~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~--~i~e-SgGq~q~~~ia~al~-~~~l~llD-p 201 (283)
.. + +...... ....+...++.+.|+.+++.+.... +.-+ ||||+||+.||++|+ +|.+++.| |
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 11 1 1000000 1123344567788888887665443 6666 999999999999998 69999998 9
Q ss_pred CCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 202 SGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 202 t~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
|+++|. .++.+.. .++||+|++|+.|.+++.|+..+++.+
T Consensus 182 TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~ 245 (539)
T COG1123 182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245 (539)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc
Confidence 998652 2233322 178999999999999999999988863
No 183
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=4.9e-22 Score=181.24 Aligned_cols=171 Identities=19% Similarity=0.214 Sum_probs=135.7
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHH---HHHHhccccCCchH-------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDG---EFLMRNGALPEERI------- 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~------- 138 (283)
.+.++++|.- +|+.+||+|.+|||||||-.+|+++++++|.|.+.+.++...+.. .+++++-+|||+|+
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm 380 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM 380 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence 4678888885 499999999999999999999999999999999999999876543 45778999999985
Q ss_pred ---HHHHhCCC---CCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC--
Q 023354 139 ---RAVETGGC---PHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK-- 206 (283)
Q Consensus 139 ---~~i~~~g~---~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~-- 206 (283)
..+.-|.. +..+..+...++.++|.++++.. ..+++.-| ||||+||++|||+++ .|.++++| ||+.+|
T Consensus 381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 22222222 22344556668889999998765 46778888 999999999999998 68888888 998753
Q ss_pred -----------chhhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 207 -----------IPRKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 207 -----------l~~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++++.+..+ ..|++|++|+.|++++.|+..++|.
T Consensus 461 VQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 461 VQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 333433221 6899999999999999999988875
No 184
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=9.1e-22 Score=169.82 Aligned_cols=156 Identities=19% Similarity=0.140 Sum_probs=111.1
Q ss_pred ccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHh
Q 023354 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (283)
Q Consensus 74 ~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~ 143 (283)
+++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... .++.++|++|++. +.+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhc
Confidence 67777 459999999999999999999999999987 999999888765433 2467999999853 11222
Q ss_pred CCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----------
Q 023354 144 GGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------- 209 (283)
Q Consensus 144 ~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------- 209 (283)
+....... ......+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 21111111 11223455677777766666666666 999999999999998 58888888 999865321
Q ss_pred ---hcCCcc-----------cccCEEEEEcCCcccc
Q 023354 210 ---KGGPGI-----------TQADLLVINKTDLASA 231 (283)
Q Consensus 210 ---~~~~~i-----------~~ad~ivi~K~g~i~~ 231 (283)
+.+.++ .+||++++++.|++..
T Consensus 174 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 112221 5689999999888765
No 185
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.87 E-value=6.1e-22 Score=195.19 Aligned_cols=187 Identities=17% Similarity=0.148 Sum_probs=134.0
Q ss_pred CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.++++.|++. .+.+++.+|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus 332 ~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 410 (585)
T TIGR01192 332 KGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410 (585)
T ss_pred CCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 3457788889988754 35789999985 59999999999999999999999999997 999999999888888888899
Q ss_pred ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
++|++|++..+ +..-+.+..+. +.+....+ .+.++. ...+++..+.+ ||||+||+++||+++ +
T Consensus 411 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~-~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 411 IATVFQDAGLFNRSIRENIRLGREGATD-EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred eEEEccCCccCcccHHHHHhcCCCCCCH-HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999997411 11222232222 22211111 122211 12344555544 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|.++++| ||++.|...+ .+.+ +..||+|+++..|++.+.|+..+.+.
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 7777777 9998653211 1111 36799999999999999888766543
No 186
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=1.2e-22 Score=176.48 Aligned_cols=175 Identities=18% Similarity=0.116 Sum_probs=115.7
Q ss_pred ccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (283)
...+..+.|.......+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+
T Consensus 4 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (221)
T cd03244 4 EFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISII 83 (221)
T ss_pred EEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEE
Confidence 3444555555444468899999854 9999999999999999999999999987 9999998877665666677889999
Q ss_pred CCchHHH----HHhCCCCCCChHHHHHHHHHHHHHccccc-----------cCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354 134 PEERIRA----VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-DYII 196 (283)
Q Consensus 134 ~q~~~~~----i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-----------~~d~~i~e-SgGq~q~~~ia~al~-~~~l 196 (283)
+|++..+ .+.-........+ .+.+.++.+.... ..+..+.. |+||+||+.+|++++ +|.+
T Consensus 84 ~q~~~l~~~tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 84 PQDPVLFSGTIRSNLDPFGEYSDE---ELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred CCCCccccchHHHHhCcCCCCCHH---HHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9986411 0000000011111 1222233322211 11223334 999999999999998 5888
Q ss_pred EEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccC
Q 023354 197 YIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIG 233 (283)
Q Consensus 197 ~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g 233 (283)
+++| |+++.|.... ...+ +..||++++++.|++.+.|
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFD 219 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecC
Confidence 8887 9998653211 0111 2457888888888877654
No 187
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.87 E-value=4e-22 Score=173.01 Aligned_cols=169 Identities=20% Similarity=0.193 Sum_probs=111.1
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
.+....|.......+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|
T Consensus 6 ~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 85 (220)
T cd03245 6 RNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ 85 (220)
T ss_pred EEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCC
Confidence 3444445433345788999985 59999999999999999999999999887 999998887755455556678999999
Q ss_pred chHH-------HHHhCCCCCCChHHHHHHHHHHHHHccccccCCC-----------cccC-CchHHHHHHHHHHhc-CCc
Q 023354 136 ERIR-------AVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 136 ~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~-----------~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
++.. .+.+. .... ... .+.+.++.+......+. .+.+ |+||+||+.+|++++ +|.
T Consensus 86 ~~~~~~~tv~e~l~~~-~~~~-~~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 86 DVTLFYGTLRDNITLG-APLA-DDE---RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred CCccccchHHHHhhcC-CCCC-CHH---HHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 8631 11111 1111 111 12233333333222222 1234 999999999999998 588
Q ss_pred EEEEe-CCCCCCchhh---------c--CCc----------ccccCEEEEEcCCcccc
Q 023354 196 IYIID-VSGGDKIPRK---------G--GPG----------ITQADLLVINKTDLASA 231 (283)
Q Consensus 196 l~llD-pt~g~~l~~~---------~--~~~----------i~~ad~ivi~K~g~i~~ 231 (283)
++++| |+++.|.... . ..+ +++||++++++.|.+.+
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 88888 9998754211 0 011 15677777777777654
No 188
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.87 E-value=2.9e-22 Score=195.28 Aligned_cols=155 Identities=23% Similarity=0.262 Sum_probs=117.1
Q ss_pred CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+.+.+.+++|.|++..++.+++++|..+ |++++|+||+|||||||+++|+|+++|+ |+|.+++.++...+..++++.+
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 4688899999998766678999999854 9999999999999999999999999998 9999999999988888899999
Q ss_pred cccCCchHH------HHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-CC
Q 023354 131 GALPEERIR------AVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 131 g~v~q~~~~------~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~ 194 (283)
+|++|++.. .+.+.+.+..+ .+.+..+.+ .+.++. ...++|..+.| ||||+||+++||+++ +|
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~-~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDAS-DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCC-HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 999999742 22222233222 222221111 122221 12356777765 999999999999998 47
Q ss_pred cEEEEe-CCCCCCch
Q 023354 195 IIYIID-VSGGDKIP 208 (283)
Q Consensus 195 ~l~llD-pt~g~~l~ 208 (283)
.++++| ||++.|..
T Consensus 478 ~ililDE~ts~lD~~ 492 (529)
T TIGR02857 478 PLLLLDEPTAHLDAE 492 (529)
T ss_pred CEEEEeCcccccCHH
Confidence 777777 99987643
No 189
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.87 E-value=4e-22 Score=172.28 Aligned_cols=133 Identities=25% Similarity=0.263 Sum_probs=97.7
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------- 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------- 139 (283)
..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++. .+++.++|++|++..
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEeccccccccCCCCcH
Confidence 4788899985 59999999999999999999999999987 99998876553 355679999997521
Q ss_pred --HHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 140 --AVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 140 --~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
.+..+..... ........+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 165 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 1112111100 0111223445667777666556666666 999999999999998 58888888 9999764
No 190
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=7.9e-22 Score=172.57 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=114.8
Q ss_pred cccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC----C-CcEEEEeecCCCCCHHHHHHhccccCCchHH-H----
Q 023354 72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-A---- 140 (283)
Q Consensus 72 ~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~---- 140 (283)
+++++|.. +|++++|+||||||||||+++|+|+++| + |+|.+.+.++... ...++.++|++|++.. +
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCccc
Confidence 45677774 5999999999999999999999999988 5 9999988876532 1223579999998631 1
Q ss_pred -----HHhCC-CCCCChHHHHHHHHHHHHHcccc---ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 141 -----VETGG-CPHAAIREDISINLGPLEELSNL---FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 141 -----i~~~g-~~~~~~~~~~~~~~~~l~~l~~~---~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
+.... ............+.+.++.++.. ...+..+.+ |+||+||++||++++ +|.|+++| |+++.|..
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 00000 00000111222455667777654 334556666 999999999999998 58888888 99986532
Q ss_pred h-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 209 R-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 209 ~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
. +.+.++ .+||++++++.|++...|++.+.+
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 1 112221 579999999999999888765554
No 191
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.6e-22 Score=177.16 Aligned_cols=185 Identities=12% Similarity=0.053 Sum_probs=125.9
Q ss_pred CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCC--CCH
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KED 123 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~--~~~ 123 (283)
+.+...+..+.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++ |+ |+|.+.+.++.. ...
T Consensus 12 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 12 SKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred ceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 44556666666643 35788999985 599999999999999999999999986 34 999999887753 233
Q ss_pred HHHHHhccccCCchHH-------HHHhCCCC--CCChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHH
Q 023354 124 GEFLMRNGALPEERIR-------AVETGGCP--HAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSR 189 (283)
Q Consensus 124 ~~~~~~ig~v~q~~~~-------~i~~~g~~--~~~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~ 189 (283)
..+++.++|++|++.. .+.++... .....+....+.+.++.+... ...+..+.+ |+||+||+.||+
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 4567789999998531 11111000 011111112344556665432 234455555 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+++ +|.++++| |+++.|.... ...++ .+||++++++.|++...|+..+.+
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 998 58888888 9998653211 11121 579999999999999887765544
No 192
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.87 E-value=1.1e-22 Score=217.51 Aligned_cols=186 Identities=15% Similarity=0.122 Sum_probs=142.6
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhc
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~i 130 (283)
.|.+.+.++++.|+....+++++++|..+ |++|+|+|++|||||||+++|+|++.++|+|.+++.|+...+...+|+++
T Consensus 1215 ~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence 46789999999998877789999999965 99999999999999999999999997569999999999999999999999
Q ss_pred cccCCchHHHHHh---CCCCCC-ChHHHHHHHHHHHHHccc-------cccCCCcccC-----CchHHHHHHHHHHhcC-
Q 023354 131 GALPEERIRAVET---GGCPHA-AIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSRELAD- 193 (283)
Q Consensus 131 g~v~q~~~~~i~~---~g~~~~-~~~~~~~~~~~~l~~l~~-------~~~~d~~i~e-----SgGq~q~~~ia~al~~- 193 (283)
+++||++..+-.+ +-.+.. ...+ .+.++|+...+ ..++|..+.| |+||+||+++||+++.
T Consensus 1295 s~IpQdp~LF~GTIR~NLdp~~~~tde---ei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~ 1371 (1490)
T TIGR01271 1295 GVIPQKVFIFSGTFRKNLDPYEQWSDE---EIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSK 1371 (1490)
T ss_pred EEEeCCCccCccCHHHHhCcccCCCHH---HHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCC
Confidence 9999998532110 011111 1112 22334443322 2467777876 9999999999999995
Q ss_pred CcEEEEe-CCCCCCchh----------hc-C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPR----------KG-G----------PGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~----------~~-~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.|+++| ||++.|... .. . .++..||+|++++.|++.+.|++.+++.
T Consensus 1372 ~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1372 AKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 7777777 998865321 11 1 1236799999999999999999988774
No 193
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.8e-22 Score=176.86 Aligned_cols=184 Identities=14% Similarity=0.077 Sum_probs=124.4
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCCC--HH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE--DG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~~--~~ 124 (283)
.+...++.+.|.. ...+.+++|.. +|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.... ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 3555566666542 35789999985 5999999999999999999999999874 4 99999888765321 23
Q ss_pred HHHHhccccCCchHH-------HHHhCCCCC-CChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354 125 EFLMRNGALPEERIR-------AVETGGCPH-AAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 125 ~~~~~ig~v~q~~~~-------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
.+++.++|++|++.. .+.++.... .........+.+.++.+... ...+..+.+ |+||+||+++|+++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 169 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence 456779999997531 111110000 01111112334456655442 234555556 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+ +|.++++| |+++.|...+ .+.+ ..+||++++++.|++.+.|++.+.+
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8 58888888 9998653211 1122 1679999999999999888776554
No 194
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.4e-22 Score=177.22 Aligned_cols=163 Identities=21% Similarity=0.164 Sum_probs=121.7
Q ss_pred ccccccCCC-cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC----HHHHHHhccccCCchHHHHHhCCC
Q 023354 73 LSRNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIRAVETGGC 146 (283)
Q Consensus 73 ~~~~~~~~g-~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~~i~~~g~ 146 (283)
-+.+|..++ .+++|-|++|||||||+|+|+|+.+|+ |.|.+++.-+.... -..-++++|||||+.-.|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLF------ 88 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF------ 88 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccc------
Confidence 356777776 799999999999999999999999998 99999887654322 122357899999985322
Q ss_pred CCCChHH---------HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhhcCCc
Q 023354 147 PHAAIRE---------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGPG 214 (283)
Q Consensus 147 ~~~~~~~---------~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~~~~~ 214 (283)
|+.+++. ........+..++..+..++.... |||++||++|+|||. .|.++|+| |.+..|.+++....
T Consensus 89 pH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil 168 (352)
T COG4148 89 PHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL 168 (352)
T ss_pred cceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH
Confidence 2221111 111233456667777777777777 999999999999998 58888888 88877665442110
Q ss_pred ------------------------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 215 ------------------------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 215 ------------------------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
.+.||+||++..|++.+.|...+++..
T Consensus 169 pylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 169 PYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred HHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 289999999999999999988888764
No 195
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.87 E-value=5.1e-22 Score=196.94 Aligned_cols=171 Identities=18% Similarity=0.118 Sum_probs=125.2
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchH------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~------ 138 (283)
.++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|+||++.
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 4788999985 49999999999999999999999999987 9999999887655432 24567999999852
Q ss_pred ----HHHHhCC-CCCC-ChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 139 ----RAVETGG-CPHA-AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 139 ----~~i~~~g-~~~~-~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
+.+..+. .... ...+....+.+.|+.+++. ...++.+.+ ||||+||++||++|+ +|.|+|+| |+++.|..
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~ 497 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 1111110 0000 1112223455678888774 456777777 999999999999998 58888888 99987532
Q ss_pred -------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 209 -------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 209 -------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.+.++ .+||+|++++.|++++.|++.+++.
T Consensus 498 ~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~ 553 (623)
T PRK10261 498 IRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFE 553 (623)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 1212221 6799999999999999888877654
No 196
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.7e-22 Score=176.59 Aligned_cols=190 Identities=11% Similarity=0.054 Sum_probs=125.5
Q ss_pred CCCCCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCC
Q 023354 48 HDGLAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT 120 (283)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~ 120 (283)
.+|..+.+...++.+.|.. .+.+.+++|.. +|++++|+|+||||||||+++|+|++. |+ |+|.+.+.++..
T Consensus 4 ~~~~~~~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 4 LNGTETVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred cCCCceEEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 4455556667777766643 35788999985 599999999999999999999999875 34 999998877642
Q ss_pred --CCHHHHHHhccccCCchHH-------HHHhCCCCCCChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHH
Q 023354 121 --KEDGEFLMRNGALPEERIR-------AVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAAN 186 (283)
Q Consensus 121 --~~~~~~~~~ig~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ 186 (283)
.....+++.++|++|++.. .+.++.............+...++.+... ...+..+.+ |+||+||++
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 161 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLC 161 (264)
T ss_pred cccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHH
Confidence 2344567789999997531 11111110000011111222333433321 223445555 999999999
Q ss_pred HHHHhc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEc---------CCcccccC
Q 023354 187 FSRELA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINK---------TDLASAIG 233 (283)
Q Consensus 187 ia~al~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K---------~g~i~~~g 233 (283)
||++++ +|.++++| |+++.|...+ ...+ ..+||++++++ .|.+++.|
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~ 241 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFD 241 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeC
Confidence 999998 58888888 9998653211 0112 17899999998 78888888
Q ss_pred ChHHHH
Q 023354 234 ADLAVM 239 (283)
Q Consensus 234 ~~~e~~ 239 (283)
+..+++
T Consensus 242 ~~~~~~ 247 (264)
T PRK14243 242 RTEKIF 247 (264)
T ss_pred CHHHHH
Confidence 776664
No 197
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.87 E-value=2.5e-22 Score=179.50 Aligned_cols=191 Identities=21% Similarity=0.242 Sum_probs=144.4
Q ss_pred CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC
Q 023354 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149 (283)
Q Consensus 71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~ 149 (283)
..++..|..+ +.+++|+|+|||||||||+.|++.++....+.++.+|+.+..|.++.+..|. +...+ ..||.|+
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~----pvvqi-~tG~~Ch 167 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT----PAIQV-NTGKGCH 167 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCC----cEEEe-cCCCCCc
Confidence 3455556555 8999999999999999999999988777788888999887777777666553 12233 4466666
Q ss_pred ChHHHHHHHHHHHHHccccccCCCcccCCchH-HHHHHHHHHhc-CCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCC
Q 023354 150 AIREDISINLGPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD 227 (283)
Q Consensus 150 ~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq-~q~~~ia~al~-~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g 227 (283)
....++. .++..+. ....|++++|+.|. .-+.. ..+. +..+.+++.+.|++.+.++..+++.||.+|+||.|
T Consensus 168 l~a~mv~---~Al~~L~-~~~~d~liIEnvGnLvcPa~--fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiD 241 (290)
T PRK10463 168 LDAQMIA---DAAPRLP-LDDNGILFIENVGNLVCPAS--FDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVD 241 (290)
T ss_pred CcHHHHH---HHHHHHh-hcCCcEEEEECCCCccCCCc--cchhhceeEEEEECccccccchhccchhhcCcEEEEEhHH
Confidence 6554443 4455553 24569999998874 12222 1233 35689999999988777888899999999999999
Q ss_pred cccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354 228 LASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 272 (283)
Q Consensus 228 ~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~ 272 (283)
++.+.....+.+.+.+...++.++++.+|+++|+|+++|++||..
T Consensus 242 Ll~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 242 LLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 986543456667777888899999999999999999999999976
No 198
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.87 E-value=7.1e-22 Score=175.66 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=125.9
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC----------C
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----------E 122 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~----------~ 122 (283)
+...++.+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... .
T Consensus 6 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 6 LNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred EEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 444555555542 35788899985 59999999999999999999999999987 9999988776421 1
Q ss_pred ---HHHHHHhccccCCchH--------HHHHhCCC--CCCChHHHHHHHHHHHHHccccccC-CCcccC-CchHHHHHHH
Q 023354 123 ---DGEFLMRNGALPEERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANF 187 (283)
Q Consensus 123 ---~~~~~~~ig~v~q~~~--------~~i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~-d~~i~e-SgGq~q~~~i 187 (283)
...+++.++|++|++. +.+.++.. ...........+.+.++.++..... +..+.+ |+||+||+++
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 1345678999999853 11111110 0011111222445677777665543 555666 9999999999
Q ss_pred HHHhc-CCcEEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 188 SRELA-DYIIYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 188 a~al~-~~~l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
|++++ +|.++++| |+++.|... +.+.++ .+||++++++.|++++.|+..+.+
T Consensus 164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99998 58888888 999875321 112221 579999999999999877765543
No 199
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.87 E-value=8.1e-22 Score=170.50 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=113.8
Q ss_pred cccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHH
Q 023354 72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (283)
Q Consensus 72 ~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i 141 (283)
+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... .+++.++|++|++. +.+
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~t~~en~ 91 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNI 91 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCccCCCCcHHHHH
Confidence 35677874 59999999999999999999999999987 99999888775432 24567999999853 112
Q ss_pred HhCCCCCCC-hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh--------
Q 023354 142 ETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-------- 209 (283)
Q Consensus 142 ~~~g~~~~~-~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-------- 209 (283)
.++...... .......+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 171 (213)
T TIGR01277 92 GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV 171 (213)
T ss_pred HhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 121111111 111222445577777776666776666 999999999999998 58888888 999865321
Q ss_pred -----hcCCc-----------ccccCEEEEEcCCcccccCC
Q 023354 210 -----KGGPG-----------ITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 210 -----~~~~~-----------i~~ad~ivi~K~g~i~~~g~ 234 (283)
+.+.+ ..+||++++++.|++.+.|+
T Consensus 172 ~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 172 KQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 11222 15789999999998877543
No 200
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=7.8e-22 Score=191.51 Aligned_cols=182 Identities=16% Similarity=0.104 Sum_probs=130.8
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH-Hhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~-~~ig 131 (283)
+...+..+.|.. ...+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++........+ +.+|
T Consensus 12 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 12 LCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred EEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 444455555532 35788999985 59999999999999999999999999987 9999998887655544443 3589
Q ss_pred ccCCchH--------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 132 ALPEERI--------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
|++|++. +.+.++.. ...+....+.+.++.+++....+..+.+ |+||+||+.||++|+ +|.++|+|
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE 166 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLP---KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccc---cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 9999853 11222111 0111123455677888777667777777 999999999999998 58888888
Q ss_pred CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 201 VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 201 pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
|+++.|... +.+.+ ..+||++++++.|.+.+.|+..+....
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (510)
T PRK15439 167 PTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH
Confidence 999976321 11222 167999999999999888877665443
No 201
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=1.5e-21 Score=173.65 Aligned_cols=189 Identities=15% Similarity=0.073 Sum_probs=127.3
Q ss_pred CCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354 51 LAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM 128 (283)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~ 128 (283)
..+.+.+.+..+.|.......+.+++|.. +|++++|+|+||||||||+++|+|+++|. |+|.+.+.++...+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 34667777777777654456889999985 59999999999999999999999999987 99999998887666667778
Q ss_pred hccccCCchHHHHHh----CCCCCCChHHHHHHH------HHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354 129 RNGALPEERIRAVET----GGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 129 ~ig~v~q~~~~~i~~----~g~~~~~~~~~~~~~------~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~ 194 (283)
.++|++|++..+-.+ -.............. .+.+..+ ......+....+ |+||+||+++|++++ +|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 899999986321100 000000011111111 1112221 111112222334 999999999999998 48
Q ss_pred cEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 195 IIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 195 ~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.++++| |+++.|.... ...+ +..||++++++.|++.+.|+..+.+
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLL 242 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 888887 9998653211 1111 2459999999999999888766554
No 202
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9e-22 Score=176.04 Aligned_cols=197 Identities=12% Similarity=-0.008 Sum_probs=135.5
Q ss_pred CCcccCCCCCCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEE
Q 023354 42 GRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAV 114 (283)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~ 114 (283)
.|+.++.+.....+...++.+.|.. .+.+++++|.. +|++++|+|+||||||||+++|+|+++ |+ |+|.+.
T Consensus 8 ~~~~~~~~~~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (267)
T PRK14237 8 ERHIITFPEEEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYR 85 (267)
T ss_pred cceeEecCCCCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEEC
Confidence 3566677776677788888777742 46889999985 599999999999999999999999986 35 999999
Q ss_pred eecCCCC--CHHHHHHhccccCCchHH-------HHHhCCCCC-CChHHH-HHHHHHHHHHcccc----ccCCCcccC-C
Q 023354 115 TNDIFTK--EDGEFLMRNGALPEERIR-------AVETGGCPH-AAIRED-ISINLGPLEELSNL----FKADLLLCE-S 178 (283)
Q Consensus 115 ~~d~~~~--~~~~~~~~ig~v~q~~~~-------~i~~~g~~~-~~~~~~-~~~~~~~l~~l~~~----~~~d~~i~e-S 178 (283)
+.++... ....+++.++|++|++.. .+.++.... ...... ...+.+.++.+.+. ...+..+.+ |
T Consensus 86 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS 165 (267)
T PRK14237 86 GIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLS 165 (267)
T ss_pred CEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCC
Confidence 8877432 233456789999997531 111110000 001111 12334455555442 234555555 9
Q ss_pred chHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCC
Q 023354 179 GGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 179 gGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~ 234 (283)
+||+||+++|++++ +|.++++| |+++.|.... ...+ ..+||++++++.|++.+.|+
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999998 58888888 9998754211 1111 16799999999999999888
Q ss_pred hHHHHh
Q 023354 235 DLAVME 240 (283)
Q Consensus 235 ~~e~~~ 240 (283)
..+.+.
T Consensus 246 ~~~~~~ 251 (267)
T PRK14237 246 TRNIFT 251 (267)
T ss_pred HHHHhc
Confidence 766543
No 203
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.87 E-value=8.4e-22 Score=174.68 Aligned_cols=181 Identities=18% Similarity=0.148 Sum_probs=122.8
Q ss_pred ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec-----CCCCCHHHH--
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF-- 126 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d-----~~~~~~~~~-- 126 (283)
...++.+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+ +......+.
T Consensus 5 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 5 QVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 34455555543 24688899985 59999999999999999999999999987 999998866 544443322
Q ss_pred --HHhccccCCchHH----------HHHhC--CCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHH
Q 023354 127 --LMRNGALPEERIR----------AVETG--GCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRE 190 (283)
Q Consensus 127 --~~~ig~v~q~~~~----------~i~~~--g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~a 190 (283)
++.++|++|++.. .+... .............+.+.++.++.. ...+..+.+ |+||+||++||++
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 3468999997521 11000 000000111123445667777664 355666666 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 191 LA-DYIIYIID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
++ +|.++++| |+++.|... +.+.++ .+||++++++.|++...++..+.
T Consensus 163 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence 98 58888888 999865321 112221 47999999999999887766544
No 204
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=5.7e-22 Score=176.46 Aligned_cols=185 Identities=14% Similarity=0.055 Sum_probs=125.8
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC--CCHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~--~~~~ 124 (283)
.+...++.+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++| .|+|.+.+.++.. ....
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4556666666643 35789999985 5999999999999999999999999862 4999999887753 2334
Q ss_pred HHHHhccccCCchHH-------HHHhCCCCCC-Ch-HHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHH
Q 023354 125 EFLMRNGALPEERIR-------AVETGGCPHA-AI-REDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRE 190 (283)
Q Consensus 125 ~~~~~ig~v~q~~~~-------~i~~~g~~~~-~~-~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~a 190 (283)
.+++.++|++|++.. .+.++..... .. .+....+.+.++.++.. ...+..+.+ |+||+||+.+|++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lara 169 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARA 169 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 556789999998531 1111111111 01 11112333455555432 224555555 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++ +|.++++| |+++.|...+ ...+ ..+||++++++.|++...|++.+.+.
T Consensus 170 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 170 LATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 98 58888888 9998764211 0112 15799999999999999888776543
No 205
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.87 E-value=1.3e-21 Score=174.35 Aligned_cols=181 Identities=14% Similarity=0.158 Sum_probs=126.3
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC----CcEEEEeecCCCC-----CHH
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTK-----EDG 124 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~----g~i~i~~~d~~~~-----~~~ 124 (283)
+...++.+.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ...
T Consensus 5 l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 5 IRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 344455555532 35788999984 59999999999999999999999999863 8999998876432 123
Q ss_pred HHHHhccccCCchH--------HHHHhCCCC---C-----C-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHH
Q 023354 125 EFLMRNGALPEERI--------RAVETGGCP---H-----A-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAAN 186 (283)
Q Consensus 125 ~~~~~ig~v~q~~~--------~~i~~~g~~---~-----~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ 186 (283)
.+++.++|+||++. +.+.++... . . ...+....+.+.++.++.....+..+.+ |+||+||+.
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 45667999999853 112221110 0 0 0111223456677777776666777766 999999999
Q ss_pred HHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHH
Q 023354 187 FSRELA-DYIIYIID-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLA 237 (283)
Q Consensus 187 ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e 237 (283)
||++++ +|.|+|+| |+++.|.. .+.+.+ ..+||++++++.|++...|+..+
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999998 58888888 99987532 111222 16799999999999988877654
No 206
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.87 E-value=1.1e-21 Score=171.78 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=111.4
Q ss_pred cccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHH
Q 023354 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVE 142 (283)
Q Consensus 73 ~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~ 142 (283)
++++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+|++|++. +.+.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHHH
Confidence 456676 459999999999999999999999999987 999998887754322 2378888742 1222
Q ss_pred hCC---CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch--------
Q 023354 143 TGG---CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-------- 208 (283)
Q Consensus 143 ~~g---~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------- 208 (283)
++. .......+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 210 11111112222345677777776666777777 999999999999998 58888888 99986532
Q ss_pred -----hhcCCcc-----------cccCEEEEEcCCcccccCCh
Q 023354 209 -----RKGGPGI-----------TQADLLVINKTDLASAIGAD 235 (283)
Q Consensus 209 -----~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~ 235 (283)
++.+.++ .+||++++++.|.++..|+.
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQI 199 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCc
Confidence 1112221 67999999999999876644
No 207
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.87 E-value=8.9e-22 Score=167.24 Aligned_cols=140 Identities=17% Similarity=0.095 Sum_probs=101.4
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC--CHHHHHHhccccCCchHH-----
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERIR----- 139 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~~----- 139 (283)
...+++++|... |++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....+++.++|++|++..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 457889999854 9999999999999999999999999987 9999988877421 223456679999998621
Q ss_pred ----HHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 140 ----AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 140 ----~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
.+.++.. ......+....+.+.++.+++....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 1111100 0011111122445667777766666777777 999999999999998 58888888 99998754
No 208
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.87 E-value=8.6e-22 Score=175.26 Aligned_cols=170 Identities=16% Similarity=0.083 Sum_probs=120.4
Q ss_pred CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
..+...++.+.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++ ..+++.+
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~-----~~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL-----AEAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH-----HHhhCce
Confidence 34555666666643 35788999985 59999999999999999999999999987 9998765543 2345679
Q ss_pred cccCCchHH--------HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 131 GALPEERIR--------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 131 g~v~q~~~~--------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
+|++|++.. .+.++.. . .....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~--~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD 158 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK--G---QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc--c---hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999997531 1111110 0 0112345567777766656666666 999999999999998 58888888
Q ss_pred -CCCCCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCC
Q 023354 201 -VSGGDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 201 -pt~g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~ 234 (283)
|+++.|... +.+.+ ..+||++++++.|.+...++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 999875321 11222 15799999999999987553
No 209
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.87 E-value=7.4e-22 Score=193.19 Aligned_cols=177 Identities=15% Similarity=0.077 Sum_probs=129.4
Q ss_pred CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+.+.+.+++|.|+. ..+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.+
T Consensus 321 ~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 321 QTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred ceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 45788899999874 346799999985 59999999999999999999999999987 9999999999888888889999
Q ss_pred cccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCC---cc---cCCchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354 131 GALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADL---LL---CESGGDNLAANFSRELA-DYIIYIID-VS 202 (283)
Q Consensus 131 g~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~---~i---~eSgGq~q~~~ia~al~-~~~l~llD-pt 202 (283)
+|++|++..+..+-...... ...+.+.+.++.+......+. .+ .-||||+||+++||+++ +|.++++| ||
T Consensus 400 ~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 400 SAVFTDFHLFDQLLGPEGKP--ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred EEEecChhHHHHhhccccCc--hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999986554433222111 111223345555543322111 11 12999999999999998 57777777 99
Q ss_pred CCCCchhh-------------cCCc----------ccccCEEEEEcCCccccc
Q 023354 203 GGDKIPRK-------------GGPG----------ITQADLLVINKTDLASAI 232 (283)
Q Consensus 203 ~g~~l~~~-------------~~~~----------i~~ad~ivi~K~g~i~~~ 232 (283)
++.|...+ .+.+ +..||+|++++.|++.+.
T Consensus 478 s~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 478 ADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 98653211 1122 267999999999998875
No 210
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.1e-22 Score=177.15 Aligned_cols=184 Identities=15% Similarity=0.091 Sum_probs=126.3
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCC--CCHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~--~~~~ 124 (283)
.+...++.+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.. ....
T Consensus 19 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 19 KMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred eEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 4666667766643 35789999985 5999999999999999999999999874 5 999999888753 2344
Q ss_pred HHHHhccccCCchH-------HHHHhCCCCCC---ChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHH
Q 023354 125 EFLMRNGALPEERI-------RAVETGGCPHA---AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSR 189 (283)
Q Consensus 125 ~~~~~ig~v~q~~~-------~~i~~~g~~~~---~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~ 189 (283)
.+++.++|++|++. +.+.++..... ...+....+.+.++.++... ..+..+.+ |+||+||++||+
T Consensus 97 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 176 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIAR 176 (267)
T ss_pred HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 56678999999753 11111110000 01111223445566665532 23445555 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+++ +|.++++| |+++.|.... ...++ .+||++++++.|++...|+..+.+
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 177 AIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 998 58888888 9998764211 11121 678999999999999888766554
No 211
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6e-22 Score=177.19 Aligned_cols=184 Identities=10% Similarity=0.017 Sum_probs=123.2
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~ 124 (283)
.+...+..+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|++. |+ |+|.+.+.++... ...
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4566667766643 45788999984 599999999999999999999999864 45 9999988877532 223
Q ss_pred HHHHhccccCCchHH-------HHHhCCCCCCC-hHHH-HHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHH
Q 023354 125 EFLMRNGALPEERIR-------AVETGGCPHAA-IRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRE 190 (283)
Q Consensus 125 ~~~~~ig~v~q~~~~-------~i~~~g~~~~~-~~~~-~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~a 190 (283)
.+++.++|++|++.. .+.++...... .... ...+.+.+..+... ...+..+.+ |+||+||+.||++
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lara 178 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIART 178 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHH
Confidence 456679999998531 11111000000 0111 11233445554432 223455555 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
++ +|.++++| |+++.|.... ...+ ..+||++++++.|.+.+.|+..+.+
T Consensus 179 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 179 LAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 98 58888888 9998653211 0112 1679999999999999888766554
No 212
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=8.6e-22 Score=176.36 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=122.4
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCC--CCHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~--~~~~ 124 (283)
.+...++.+.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++ |+ |+|.+.+.++.. ....
T Consensus 13 ~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 13 IISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred eEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 3555566655543 34789999985 599999999999999999999999986 45 999998887642 2345
Q ss_pred HHHHhccccCCchHH-------HHHhCCCCCCChHHHHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHHhc
Q 023354 125 EFLMRNGALPEERIR-------AVETGGCPHAAIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA 192 (283)
Q Consensus 125 ~~~~~ig~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~al~ 192 (283)
.+++.++|++|++.. .+.++.............+.+.++.+.. ....+..+.+ |+||+||++||++++
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~ 170 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA 170 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 566789999998531 1111111000011111223344555433 2234555555 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchh---------h--cCCc-----------ccccCEEEEEcC-----------CcccccCChHH
Q 023354 193 -DYIIYIID-VSGGDKIPR---------K--GGPG-----------ITQADLLVINKT-----------DLASAIGADLA 237 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~---------~--~~~~-----------i~~ad~ivi~K~-----------g~i~~~g~~~e 237 (283)
+|.++++| |+++.|... + ...+ ..+||++++++. |++++.|++.+
T Consensus 171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK 250 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence 58888888 999865321 0 1112 168999999985 55677777766
Q ss_pred HHh
Q 023354 238 VME 240 (283)
Q Consensus 238 ~~~ 240 (283)
++.
T Consensus 251 ~~~ 253 (269)
T PRK14259 251 IFN 253 (269)
T ss_pred HHh
Confidence 653
No 213
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.87 E-value=1.7e-21 Score=174.32 Aligned_cols=171 Identities=13% Similarity=0.056 Sum_probs=120.4
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhccccCCchHHH---
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERIRA--- 140 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~~~--- 140 (283)
...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+ ..+++.++|++|++...
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 45789999984 59999999999999999999999999887 999999887765443 23567899999986210
Q ss_pred -------HHhCC--CCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 141 -------VETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 141 -------i~~~g--~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
+.... .......+....+.+.++.++.. ...+..+.+ |+||+||++||++++ +|.++++| |+++.|.
T Consensus 105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~ 184 (268)
T PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184 (268)
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 10000 00000111122345566666554 344555555 999999999999998 58888888 9998753
Q ss_pred h-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 208 P-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 208 ~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
. .+.+.++ .+||++++++.|++.+.|+..+.+
T Consensus 185 ~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 185 VLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 2 1112221 579999999999998888776643
No 214
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.87 E-value=1.4e-21 Score=170.48 Aligned_cols=151 Identities=17% Similarity=0.089 Sum_probs=107.7
Q ss_pred ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.+...++...|. ....+.+++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeC--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 344555555553 2357899999854 9999999999999999999999999887 99999988876655556677899
Q ss_pred ccCCchHH-------HHHhCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 132 ALPEERIR-------AVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 132 ~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
|++|++.. .+.+....... ......+.+.++.+... ...+..+.+ |+||+||+.||++++ +|.++++|
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQ-QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCC-ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99998531 11111000000 11112344567777664 345666666 999999999999998 58888888
Q ss_pred CCCCCCc
Q 023354 201 VSGGDKI 207 (283)
Q Consensus 201 pt~g~~l 207 (283)
|+++.|.
T Consensus 164 Pt~~LD~ 170 (225)
T PRK10247 164 ITSALDE 170 (225)
T ss_pred CcccCCH
Confidence 9998754
No 215
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.86 E-value=1.7e-21 Score=169.79 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=109.5
Q ss_pred CCCCccccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH
Q 023354 50 GLAPHSHEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF 126 (283)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~ 126 (283)
...+.+...+....|+... ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 3456667777777776542 35889999985 59999999999999999999999999987 999998877665545556
Q ss_pred HHhccccCCchHHH-------HHhCCCCCCChHHHHH-----HHHHHHHHc--cccccCCCcccC-CchHHHHHHHHHHh
Q 023354 127 LMRNGALPEERIRA-------VETGGCPHAAIREDIS-----INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 127 ~~~ig~v~q~~~~~-------i~~~g~~~~~~~~~~~-----~~~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
++.++|++|++..+ +.++ .......+... ...+.++.+ +.....+..+.+ |+||+||+.+|+++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYG-LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccc-cCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 67899999986422 1111 11111111000 122345555 333344555555 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCc
Q 023354 192 A-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l 207 (283)
+ +|.++++| |+++.|.
T Consensus 166 ~~~p~llllDEPt~~LD~ 183 (226)
T cd03248 166 IRNPQVLILDEATSALDA 183 (226)
T ss_pred hcCCCEEEEeCCcccCCH
Confidence 8 48888888 9998764
No 216
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.86 E-value=1.1e-21 Score=172.75 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=115.3
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEeecCCCCCHHHHH-HhccccCCchHH-----
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIR----- 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~~----- 139 (283)
..+.+++|.. +|++++|+||||||||||+++|+|++ +|+ |+|.+.+.++......... ..++|++|++..
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS 93 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence 4788899985 49999999999999999999999995 576 9999999887665544433 348999998531
Q ss_pred ---HHHhC-----CCC-C--CChHHHHHHHHHHHHHcccc-ccCCCccc-C-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354 140 ---AVETG-----GCP-H--AAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (283)
Q Consensus 140 ---~i~~~-----g~~-~--~~~~~~~~~~~~~l~~l~~~-~~~d~~i~-e-SgGq~q~~~ia~al~-~~~l~llD-pt~ 203 (283)
.+.+. ... . ....+....+.+.++.++.. ...+..+. + |+||+||+.||++++ +|.++++| |++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 173 (243)
T TIGR01978 94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173 (243)
T ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 11111 000 0 00111122345567777665 34455554 3 999999999999998 58888888 999
Q ss_pred CCCchh------------hcCCcc-----------cc-cCEEEEEcCCcccccCChH
Q 023354 204 GDKIPR------------KGGPGI-----------TQ-ADLLVINKTDLASAIGADL 236 (283)
Q Consensus 204 g~~l~~------------~~~~~i-----------~~-ad~ivi~K~g~i~~~g~~~ 236 (283)
+.|... +.+.++ .. ||++++++.|++...|+..
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 174 GLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred cCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 865321 111221 45 7999999999998877654
No 217
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.2e-21 Score=173.58 Aligned_cols=184 Identities=13% Similarity=0.087 Sum_probs=124.3
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc--C---C-CcEEEEeecCCCC--CHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~--~---~-g~i~i~~~d~~~~--~~~ 124 (283)
.+...+..+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++ | + |+|.+.+.++... ...
T Consensus 4 ~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 3455566666642 35789999985 599999999999999999999999985 3 4 9999998877532 234
Q ss_pred HHHHhccccCCchH--------HHHHhCCCCCC--ChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHH
Q 023354 125 EFLMRNGALPEERI--------RAVETGGCPHA--AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSR 189 (283)
Q Consensus 125 ~~~~~ig~v~q~~~--------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~ 189 (283)
.+++.++|+||++. +.+.++..... ...+....+.+.++.++... ..+..+.+ |+||+||+++|+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 55678999999853 11111110111 11111123445565655422 23444555 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+++ +|.++++| |+++.|.... ...+ ..+||++++++.|++...|+..+.+
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 998 58888888 9998754211 0112 1679999999999999888776654
No 218
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=2.4e-21 Score=159.76 Aligned_cols=171 Identities=16% Similarity=0.147 Sum_probs=126.8
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC----------H---HHHHHhccccC
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----------D---GEFLMRNGALP 134 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~----------~---~~~~~~ig~v~ 134 (283)
..|..+++..+ |.+|.|||.+||||||+|++|.=+..|+ |.|.+.+.++.... . ..+|.+.|+||
T Consensus 20 eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF 99 (256)
T COG4598 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF 99 (256)
T ss_pred hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh
Confidence 36778888755 9999999999999999999999999998 99999888765221 1 23466799999
Q ss_pred CchHHH---------HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354 135 EERIRA---------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (283)
Q Consensus 135 q~~~~~---------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p 201 (283)
|....+ ++.+.... ....+..+.....|.++++.+..+.+... ||||+||++|||+|+ +|.++|+| |
T Consensus 100 Q~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEP 179 (256)
T COG4598 100 QHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEP 179 (256)
T ss_pred hhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCC
Confidence 986421 11111000 11233445566778888888777766666 999999999999998 68888888 9
Q ss_pred CCCCC-------------chhhcCCcc----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 202 SGGDK-------------IPRKGGPGI----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 202 t~g~~-------------l~~~~~~~i----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+.+| +.++...++ ..+..|+++..|++.++|++.++|.
T Consensus 180 TSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~ 241 (256)
T COG4598 180 TSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhc
Confidence 99754 223332221 4577999999999999999998886
No 219
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2e-21 Score=170.29 Aligned_cols=168 Identities=15% Similarity=0.121 Sum_probs=118.5
Q ss_pred CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH-------
Q 023354 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------- 140 (283)
Q Consensus 70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------- 140 (283)
..+++++|. .+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... .++.++|++|++..+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccccCCCCcHHH
Confidence 578889998 459999999999999999999999999987 999998887764333 246799999875311
Q ss_pred -HHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------
Q 023354 141 -VETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP------- 208 (283)
Q Consensus 141 -i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~------- 208 (283)
+.++..... ........+...++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~ 171 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQL 171 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 111100000 0111112334566666666656666666 999999999999998 58888887 99986532
Q ss_pred ------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 209 ------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 209 ------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.+.+.++ .+||++++++.|++.+.++..+.+
T Consensus 172 ~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 172 ELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 1112221 579999999999998877655443
No 220
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=187.53 Aligned_cols=170 Identities=14% Similarity=0.084 Sum_probs=122.7
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhccccCCchH-------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~------- 138 (283)
...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV 90 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCH
Confidence 35788999984 59999999999999999999999999987 9999999887654433 33457999999753
Q ss_pred -HHHHhCCCCCC----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-
Q 023354 139 -RAVETGGCPHA----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR- 209 (283)
Q Consensus 139 -~~i~~~g~~~~----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~- 209 (283)
+.+.++..... ...+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~ 170 (491)
T PRK10982 91 MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170 (491)
T ss_pred HHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 12222211110 1111223455677777766666776766 999999999999998 58888888 999976321
Q ss_pred -----------hcCCc-----------ccccCEEEEEcCCcccccCChHHH
Q 023354 210 -----------KGGPG-----------ITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 210 -----------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+.+.+ ..+||++++++.|++...++..+.
T Consensus 171 ~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 171 NHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 11222 167999999999999887765544
No 221
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3e-21 Score=187.26 Aligned_cols=185 Identities=16% Similarity=0.162 Sum_probs=129.0
Q ss_pred ccccccCCCCCCC-CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc-CC-CcEEEEeecCCCCCHH-HHHH
Q 023354 54 HSHEPIYSPGYFS-RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKEDG-EFLM 128 (283)
Q Consensus 54 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~-~~-g~i~i~~~d~~~~~~~-~~~~ 128 (283)
.+...++...|.. ....++++++|..+ |++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++....+. .+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 3556666766642 23457889999855 99999999999999999999999998 45 9999988877543332 3455
Q ss_pred hccccCCchH-----------HHHHhCC---CCC-C--ChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHH
Q 023354 129 RNGALPEERI-----------RAVETGG---CPH-A--AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSR 189 (283)
Q Consensus 129 ~ig~v~q~~~-----------~~i~~~g---~~~-~--~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~ 189 (283)
.++|++|++. +.+.++. ... . ...+....+.+.++.+... ...+..+.+ ||||+||+.||+
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~ 418 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK 418 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence 6999999841 1121111 100 0 1111223456678888775 356777777 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchhh------------cCCc-----------ccccCEEEEEcCCcccccCChHHH
Q 023354 190 ELA-DYIIYIID-VSGGDKIPRK------------GGPG-----------ITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+++ +|.++|+| |+++.|.... .+.+ ..+||++++++.|++...++..+.
T Consensus 419 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 419 CLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 998 58888888 9999764311 1222 167999999999999876655443
No 222
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.86 E-value=1.6e-21 Score=190.17 Aligned_cols=186 Identities=16% Similarity=0.133 Sum_probs=129.5
Q ss_pred ccccccCCCCCCCC---------CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCH
Q 023354 54 HSHEPIYSPGYFSR---------RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED 123 (283)
Q Consensus 54 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~ 123 (283)
.+...+++..|... ....+++++|..+ |++++|+||||||||||+++|+|+++.+|+|.+.+.++...+.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNR 354 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccch
Confidence 35566666666421 2357899999854 9999999999999999999999998645999999887765433
Q ss_pred H---HHHHhccccCCchH----------HHHHhCCCCC---CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHH
Q 023354 124 G---EFLMRNGALPEERI----------RAVETGGCPH---AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAA 185 (283)
Q Consensus 124 ~---~~~~~ig~v~q~~~----------~~i~~~g~~~---~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~ 185 (283)
. .+++.++|++|++. +.+.++.... ....+....+.+.|+.+++. ...+..+.+ ||||+||+
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 434 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI 434 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence 2 23567999999852 1111111000 01111123455677777765 345666666 99999999
Q ss_pred HHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 186 NFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 186 ~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.||++++ +|.++|+| |+++.|.. .+.+.++ .+||++++++.|++.+.|+..+++
T Consensus 435 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 435 AIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred HHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 9999998 58888888 99997532 1112221 679999999999998888776654
No 223
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.86 E-value=2.3e-21 Score=166.94 Aligned_cols=171 Identities=17% Similarity=0.147 Sum_probs=115.1
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.....+..+.|.....+.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......++++.++
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 85 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 34445555555543346889999985 59999999999999999999999999987 99999998876655556677899
Q ss_pred ccCCchHHHH----HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 132 ALPEERIRAV----ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 132 ~v~q~~~~~i----~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
|++|++..+. +.-........ ..+.+.++ .+..+.+ |+||+||+++||+++ +|.++++| |+++
T Consensus 86 ~v~q~~~~~~~tv~~~l~~~~~~~~---~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 155 (207)
T cd03369 86 IIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155 (207)
T ss_pred EEecCCcccCccHHHHhcccCCCCH---HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 9999863110 00000000011 11122222 2333444 999999999999998 58888877 9998
Q ss_pred CCchhh-----------cCCc----------ccccCEEEEEcCCcccccCC
Q 023354 205 DKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 205 ~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~ 234 (283)
.|.... .+.+ +..||++++++.|++...|+
T Consensus 156 LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 156 IDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 654211 0111 13478888888888766543
No 224
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.86 E-value=1.5e-21 Score=173.32 Aligned_cols=177 Identities=14% Similarity=0.022 Sum_probs=120.7
Q ss_pred ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC----C-CcEEEEeecCCCCCHHHHHHh
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
...++.+.| ..+.+.+++|.. +|++++|+|+||||||||+++|+|+++| + |+|.+.+.++... ...++.
T Consensus 6 ~~~~l~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~~ 80 (254)
T PRK10418 6 ELRNIALQA---AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGRK 80 (254)
T ss_pred EEeCeEEEe---ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccce
Confidence 344555555 235788999985 5999999999999999999999999988 7 9999988776421 112356
Q ss_pred ccccCCchHH-H---------HHhC-CCCCCChHHHHHHHHHHHHHccccc---cCCCcccC-CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIR-A---------VETG-GCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~-~---------i~~~-g~~~~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-SgGq~q~~~ia~al~-~ 193 (283)
++|++|++.. + +... ...... .....+.+.++.++... ..+..+.+ |+||+||+.||++++ +
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 158 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE 158 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence 9999998521 0 0000 000000 11123455667766543 23555555 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 194 YIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
|.++++| |+++.|.. .+.+.++ .+||++++++.|++...++..+.+
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 8888888 99986532 1112221 579999999999999887765543
No 225
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3e-21 Score=166.98 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=109.2
Q ss_pred ccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC----HHHHHHhccccCCchHH--------
Q 023354 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIR-------- 139 (283)
Q Consensus 74 ~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~-------- 139 (283)
+++|. .+ ++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ....++.++|++|++..
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 66776 56 999999999999999999999999987 99999887764321 22345679999998531
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------
Q 023354 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------- 209 (283)
Q Consensus 140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------- 209 (283)
.+.++.... ........+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...
T Consensus 95 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (214)
T cd03297 95 NLAFGLKRK-RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173 (214)
T ss_pred HHHHHHhhC-CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 111111000 1111222445677777666556666666 999999999999998 58888888 999875321
Q ss_pred ------hcCCcc-----------cccCEEEEEcCCccccc
Q 023354 210 ------KGGPGI-----------TQADLLVINKTDLASAI 232 (283)
Q Consensus 210 ------~~~~~i-----------~~ad~ivi~K~g~i~~~ 232 (283)
+.+.++ .+||++++++.|++.+.
T Consensus 174 l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 174 LKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred HHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 112221 56889998888887653
No 226
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.86 E-value=2e-21 Score=168.90 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=102.2
Q ss_pred CCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchHHH---
Q 023354 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIRA--- 140 (283)
Q Consensus 69 ~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~~--- 140 (283)
...+++++|. .+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...+.. ..++.++|++|++..+
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 3578899998 459999999999999999999999999987 9999988877654432 3567899999986421
Q ss_pred -----HHhCCCCC--CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 141 -----VETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 141 -----i~~~g~~~--~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
+.+..... ....+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|.
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~ 174 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDS 174 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 11111100 11122223456677777776666666666 999999999999998 58888887 9998764
No 227
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.86 E-value=2.5e-21 Score=168.94 Aligned_cols=173 Identities=14% Similarity=0.039 Sum_probs=118.0
Q ss_pred cccCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc---CC-CcEEEEeecCCCCCHHHHHHh
Q 023354 57 EPIYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 57 ~~~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~---~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
+.++++.|+... ...+++++|.. +|++++|+||||||||||+++|+|+++ |+ |+|.+.+.++. ...+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~~~ 82 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQKC 82 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhccc
Confidence 456667776663 66889999984 599999999999999999999999998 76 99999887664 2345677
Q ss_pred ccccCCchH--------HHHHhCCC---CCCChHHHH-HHHHH-HHHHccccccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354 130 NGALPEERI--------RAVETGGC---PHAAIREDI-SINLG-PLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 130 ig~v~q~~~--------~~i~~~g~---~~~~~~~~~-~~~~~-~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~ 194 (283)
++|++|++. +.+.++.. +........ ....+ .++.+......+..+.+ |+||+||+++|++++ +|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 999998753 11221110 000011111 12222 56666555545555666 999999999999998 58
Q ss_pred cEEEEe-CCCCCCchhh------------cCCc------------ccccCEEEEEcCCccccc
Q 023354 195 IIYIID-VSGGDKIPRK------------GGPG------------ITQADLLVINKTDLASAI 232 (283)
Q Consensus 195 ~l~llD-pt~g~~l~~~------------~~~~------------i~~ad~ivi~K~g~i~~~ 232 (283)
.++++| |+++.|...+ .+.+ ..+||++++++.|++.+.
T Consensus 163 ~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 225 (226)
T cd03234 163 KVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225 (226)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence 888888 9998653210 0111 246888888888887653
No 228
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.4e-21 Score=169.87 Aligned_cols=168 Identities=19% Similarity=0.255 Sum_probs=112.7
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------ 140 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------ 140 (283)
...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++|++|++..+
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 93 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGY 93 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHH
Confidence 34788889985 59999999999999999999999999987 99999888776655556677899999986421
Q ss_pred -HHhCCCCCCChHHHHHHHH------HHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 141 -VETGGCPHAAIREDISINL------GPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 141 -i~~~g~~~~~~~~~~~~~~------~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
+.++. .... ........ +.+..+ ......+..+.. |+||+||+++|++++ +|.++++| |+++.|..
T Consensus 94 nl~~~~-~~~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~ 171 (236)
T cd03253 94 NIRYGR-PDAT-DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTH 171 (236)
T ss_pred HHhhcC-CCCC-HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 11111 1111 11111101 111111 111112223334 999999999999999 48888888 99986532
Q ss_pred hh-----------cCCc----------ccccCEEEEEcCCcccccCChHHH
Q 023354 209 RK-----------GGPG----------ITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 209 ~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
.. .+.+ +..||++++++.|++...++..+.
T Consensus 172 ~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 172 TEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 11 0222 145999999999999887665443
No 229
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.3e-21 Score=173.95 Aligned_cols=183 Identities=13% Similarity=0.045 Sum_probs=120.8
Q ss_pred ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC--CCHHHH
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEF 126 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~--~~~~~~ 126 (283)
...+++..|.. ...+++++|.. +|++++|+||||||||||+++|+|+++| +|+|.+.+.++.. .....+
T Consensus 6 ~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 6 DVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred EEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 33444445533 35788999985 5999999999999999999999999863 4999999887742 234456
Q ss_pred HHhccccCCchH--------HHHHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354 127 LMRNGALPEERI--------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 127 ~~~ig~v~q~~~--------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
++.++|++|++. +.+.++..... ........+.+.++.++.. ...+..+.+ |+||+||++||+++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 678999999752 11111100000 1111112333455555432 234555555 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEc------CCcccccCChHHHHh
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINK------TDLASAIGADLAVME 240 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K------~g~i~~~g~~~e~~~ 240 (283)
+ +|.++++| |+++.|.... ...+ .++||++++++ .|++.+.|+..+.+.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS 242 (258)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence 8 58888888 9998753210 0112 16799998886 788888877766543
No 230
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.86 E-value=2.1e-21 Score=190.28 Aligned_cols=179 Identities=11% Similarity=-0.011 Sum_probs=130.4
Q ss_pred CCccccccCCCCCCCC---CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH
Q 023354 52 APHSHEPIYSPGYFSR---RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF 126 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~ 126 (283)
.+.+.+.++++.|++. ..+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred CceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 3457888999999764 235789999985 59999999999999999999999999998 999999999988888888
Q ss_pred HHhccccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHcccc-------ccCCCcccCCchHHHHHHHHHHhc-CCcEEE
Q 023354 127 LMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCESGGDNLAANFSRELA-DYIIYI 198 (283)
Q Consensus 127 ~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-------~~~d~~i~eSgGq~q~~~ia~al~-~~~l~l 198 (283)
++.+++++|++..+..+-.... ......+.+.+.++.+... .+++....-||||+||+++||+++ +|.+++
T Consensus 415 ~~~i~~v~q~~~lf~~ti~~n~-~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili 493 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLIGPDE-GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL 493 (555)
T ss_pred HhhCcEEccChhhhhhhhhccc-ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999865544332211 1111112333455554432 234443334999999999999998 577777
Q ss_pred Ee-CCCCCCchh-------------hcCCc----------ccccCEEEEEcCCcccc
Q 023354 199 ID-VSGGDKIPR-------------KGGPG----------ITQADLLVINKTDLASA 231 (283)
Q Consensus 199 lD-pt~g~~l~~-------------~~~~~----------i~~ad~ivi~K~g~i~~ 231 (283)
+| ||++.|... ..+.+ +..||+|++++.|++.+
T Consensus 494 lDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 494 FDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 77 999854211 01122 26799999999998875
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.86 E-value=2.3e-21 Score=189.05 Aligned_cols=185 Identities=11% Similarity=0.066 Sum_probs=127.7
Q ss_pred cccccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCCCHHH
Q 023354 55 SHEPIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGE 125 (283)
Q Consensus 55 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~~~~~ 125 (283)
+...++++.|... ..+++++++|.. +|++++|+||||||||||+++|+|+++| + |+|.+.+.++......+
T Consensus 6 l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 85 (529)
T PRK15134 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQT 85 (529)
T ss_pred EEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHH
Confidence 3445555556432 246889999985 5999999999999999999999999985 4 99999988876544332
Q ss_pred ---HH-HhccccCCchHH----------HHHhC--CCCCCChHHHHHHHHHHHHHccccc---cCCCcccC-CchHHHHH
Q 023354 126 ---FL-MRNGALPEERIR----------AVETG--GCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAA 185 (283)
Q Consensus 126 ---~~-~~ig~v~q~~~~----------~i~~~--g~~~~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-SgGq~q~~ 185 (283)
.+ +.+||++|++.. .+... ........+....+.+.++.+++.. ..+..+.+ ||||+||+
T Consensus 86 ~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv 165 (529)
T PRK15134 86 LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV 165 (529)
T ss_pred HHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH
Confidence 22 469999998521 01100 0000111122234566778777653 24666666 99999999
Q ss_pred HHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 186 NFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 186 ~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+||++++ +|.++|+| |+++.|.. .+.+.++ .+||+|++++.|++.+.|++.+.+
T Consensus 166 ~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred HHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999998 58888888 99986532 1112221 579999999999998877766553
No 232
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.2e-21 Score=170.39 Aligned_cols=166 Identities=18% Similarity=0.136 Sum_probs=119.1
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH--------
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA-------- 140 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~-------- 140 (283)
.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... .++.++|++|++..+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEEeecCccCCCccHHHH
Confidence 688899984 59999999999999999999999999998 999999988765433 246799999875311
Q ss_pred HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------
Q 023354 141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------- 209 (283)
Q Consensus 141 i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------- 209 (283)
+.++.... ....+....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++| |+++.|...
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 171 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE 171 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHH
Confidence 11111000 01111222345567777766666666666 999999999999998 58888888 999865321
Q ss_pred ------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 210 ------KGGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 210 ------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+.+.++ .+||++++++.|++.+.++..+.
T Consensus 172 l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 172 LKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 112221 57999999999999887765544
No 233
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2e-21 Score=172.08 Aligned_cols=184 Identities=14% Similarity=0.044 Sum_probs=123.9
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCC--CHHH
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGE 125 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~--~~~~ 125 (283)
....+....|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++| + |+|.+.+.++... ....
T Consensus 5 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 5 MESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 344555555542 35788999985 5999999999999999999999999864 4 9999998887532 2335
Q ss_pred HHHhccccCCchH-------HHHHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354 126 FLMRNGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 126 ~~~~ig~v~q~~~-------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
+++.++|++|++. +.+.++..... ...+....+.+.++.++.. ...+..+.+ |+||+||+++|+++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 5678999999863 11211110000 0111112333455555432 234455555 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh---------c--CCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 192 A-DYIIYIID-VSGGDKIPRK---------G--GPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~---------~--~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+ +|.|+++| |+++.|.... . ..+ ...||++++++.|++.+.|+..+.+.
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14270 163 AVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235 (251)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhc
Confidence 8 58888887 9998764211 0 112 15799999999999998888776653
No 234
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.4e-21 Score=175.35 Aligned_cols=180 Identities=17% Similarity=0.153 Sum_probs=122.5
Q ss_pred ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (283)
...++...|.. ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+.++|+
T Consensus 8 ~~~~l~~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~v 83 (272)
T PRK15056 8 VVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAYV 83 (272)
T ss_pred EEEeEEEEecC-CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEEe
Confidence 34455555542 235788999985 59999999999999999999999999987 999998877531 1112359999
Q ss_pred CCchHH-------HHH---hCCCCC-----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354 134 PEERIR-------AVE---TGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII 196 (283)
Q Consensus 134 ~q~~~~-------~i~---~~g~~~-----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l 196 (283)
+|++.. ... ++.... .........+.+.++.+++....+..+.+ |+||+||+.+|++++ +|.+
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 163 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV 163 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 997521 001 111100 00011222345567777776666777777 999999999999998 5888
Q ss_pred EEEe-CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 197 YIID-VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 197 ~llD-pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+++| |+++.|... +.+.+ ...||+++++ .|++...|+..+.+.
T Consensus 164 lllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 164 ILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 8888 999865321 11222 1678999888 799888787766543
No 235
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.2e-21 Score=166.67 Aligned_cols=162 Identities=14% Similarity=0.031 Sum_probs=112.7
Q ss_pred cccccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc---CC-CcEEEEeecCCCCCHHHHH
Q 023354 55 SHEPIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFL 127 (283)
Q Consensus 55 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~---~~-g~i~i~~~d~~~~~~~~~~ 127 (283)
.+..++.|.|+.. ....+.+++|.. +|++++|+||||||||||+++|+|+++ |+ |+|.+.+.++.... ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 3455667777754 345788999984 599999999999999999999999998 66 99999888776432 3456
Q ss_pred HhccccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 128 MRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 128 ~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
+.++|++|++. .++..++.+.+.... .+ ..+..+.+ |+||+||+.+|++++ +|.++++| |+++
T Consensus 83 ~~i~~~~q~~~------~~~~~tv~~~l~~~~----~~----~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~ 148 (202)
T cd03233 83 GEIIYVSEEDV------HFPTLTVRETLDFAL----RC----KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRG 148 (202)
T ss_pred ceEEEEecccc------cCCCCcHHHHHhhhh----hh----ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCcc
Confidence 67999998642 122234444332110 01 03444445 999999999999998 58888888 9998
Q ss_pred CCchh-------------hcCCc------------ccccCEEEEEcCCcccc
Q 023354 205 DKIPR-------------KGGPG------------ITQADLLVINKTDLASA 231 (283)
Q Consensus 205 ~~l~~-------------~~~~~------------i~~ad~ivi~K~g~i~~ 231 (283)
.|... +.+.+ .+.||++++++.|++..
T Consensus 149 LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 65321 11111 15688888888887764
No 236
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.86 E-value=2.8e-21 Score=169.78 Aligned_cols=163 Identities=17% Similarity=0.077 Sum_probs=111.1
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc-hH-------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE-RI------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~-~~------- 138 (283)
.+.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|+ +.
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 45788999985 59999999999999999999999999987 9999988765432 23455679998743 21
Q ss_pred -HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----
Q 023354 139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---- 209 (283)
Q Consensus 139 -~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---- 209 (283)
+.+.+..... ....+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 1111111000 11111122334566666665556666666 999999999999998 58888888 999875321
Q ss_pred ---------hcCCc-----------ccccCEEEEEcCCccccc
Q 023354 210 ---------KGGPG-----------ITQADLLVINKTDLASAI 232 (283)
Q Consensus 210 ---------~~~~~-----------i~~ad~ivi~K~g~i~~~ 232 (283)
+.+.+ ..+||++++++.|.+.+.
T Consensus 193 ~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence 11112 156889988888887653
No 237
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.8e-21 Score=164.65 Aligned_cols=177 Identities=21% Similarity=0.136 Sum_probs=132.2
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HHHHHhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~~~~~ig 131 (283)
+.+.+++..| ..+..+.++++... |+.++|+|||||||||||++++|.+.|+ |.+.+.+..++...- .+++++||
T Consensus 32 i~l~~v~v~r--~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 32 IELKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred EEecceEEEE--CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 4555555443 33468899999855 9999999999999999999999999987 999999999987655 89999999
Q ss_pred ccCCchH----------HHHHhC-----CCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354 132 ALPEERI----------RAVETG-----GCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 132 ~v~q~~~----------~~i~~~-----g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~ 193 (283)
+|...-. +.+..| |... ....++...+...|+.++.....++++.. |-||+||+.||||++ +
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~ 189 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD 189 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence 9864311 112222 2222 22344555667788889888899999988 999999999999998 6
Q ss_pred CcEEEEe-CCCCCCchhhc--------------CCc-----------ccccCEEEEEcCCcccccC
Q 023354 194 YIIYIID-VSGGDKIPRKG--------------GPG-----------ITQADLLVINKTDLASAIG 233 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~~--------------~~~-----------i~~ad~ivi~K~g~i~~~g 233 (283)
|.++++| |++|.|+..+. ..+ ....++++++|.|++++.|
T Consensus 190 P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 190 PELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 9998888 99998764320 111 1445678888888877654
No 238
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=192.38 Aligned_cols=186 Identities=15% Similarity=0.114 Sum_probs=127.3
Q ss_pred ccccccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC----------C
Q 023354 54 HSHEPIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI----------F 119 (283)
Q Consensus 54 ~~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~----------~ 119 (283)
.+...+.+..|... ..+++++++|.. +|++++|+|+||||||||+++|+|+++|+ |.|.+.+.++ .
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 34555566666432 236889999984 59999999999999999999999999987 9988766533 1
Q ss_pred CCCHHH---HH-HhccccCCchH----------HHHHhCCCC--CCChHHHHHHHHHHHHHccccc---cCCCcccC-Cc
Q 023354 120 TKEDGE---FL-MRNGALPEERI----------RAVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCE-SG 179 (283)
Q Consensus 120 ~~~~~~---~~-~~ig~v~q~~~----------~~i~~~g~~--~~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-Sg 179 (283)
...... ++ +.+||++|++. +.+.++... .....+....+.+.|+.+++.. ..+..+.+ ||
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSg 171 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSG 171 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCH
Confidence 122222 22 36999999751 112211100 1111222235566788887642 35666667 99
Q ss_pred hHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccC
Q 023354 180 GDNLAANFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIG 233 (283)
Q Consensus 180 Gq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g 233 (283)
||+||++||++|+ +|.|+|+| ||++.|.. ++.+.+ ..+||+|++++.|++++.|
T Consensus 172 Gq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g 251 (623)
T PRK10261 172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG 251 (623)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccC
Confidence 9999999999998 58888888 99986532 121222 1689999999999999888
Q ss_pred ChHHHH
Q 023354 234 ADLAVM 239 (283)
Q Consensus 234 ~~~e~~ 239 (283)
+..+.+
T Consensus 252 ~~~~~~ 257 (623)
T PRK10261 252 SVEQIF 257 (623)
T ss_pred CHHHhh
Confidence 776664
No 239
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=171.71 Aligned_cols=183 Identities=14% Similarity=0.096 Sum_probs=121.3
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc--C----CCcEEEEeecCCC--CCHHH
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D----KYSLAAVTNDIFT--KEDGE 125 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~--~----~g~i~i~~~d~~~--~~~~~ 125 (283)
+...++.+.|.. .+.+++++|.. +|++++|+|+||||||||+++|+|+++ | .|+|.+.+.++.. .....
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 4 ISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred EEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 344555555543 35788999985 599999999999999999999999875 2 4999999887753 23345
Q ss_pred HHHhccccCCchH-------HHHHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354 126 FLMRNGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 126 ~~~~ig~v~q~~~-------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
+++.++|++|++. +.+.++..... ........+.+.++.+... ...+..+.+ |+||+||++||+++
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 5678999999753 11111110000 0011112333444444321 223455555 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+ +|.++++| |+++.|...+ .+.+ ...||++++++.|++...++..+.+
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 58888888 9998653211 1122 1679999999999999887765544
No 240
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2e-21 Score=175.44 Aligned_cols=184 Identities=12% Similarity=0.028 Sum_probs=122.2
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~ 124 (283)
.+...++.+.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++ |+ |+|.+.+.++... ...
T Consensus 39 ~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 39 VIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred eEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 3555666666643 35789999985 599999999999999999999999986 45 9999988876532 334
Q ss_pred HHHHhccccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc
Q 023354 125 EFLMRNGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA 192 (283)
Q Consensus 125 ~~~~~ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~ 192 (283)
.+++.++|++|++. +.+.+..............+.+.++.+++. ...+..+.+ |+||+||++||++++
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~ 196 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA 196 (285)
T ss_pred hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 55678999999853 111111000000011112334455555432 233455555 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchhh---------c--CCc-----------ccccCEE-EEEcCCcccccCChHHHH
Q 023354 193 -DYIIYIID-VSGGDKIPRK---------G--GPG-----------ITQADLL-VINKTDLASAIGADLAVM 239 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~---------~--~~~-----------i~~ad~i-vi~K~g~i~~~g~~~e~~ 239 (283)
+|.|+|+| |+++.|.... . ..+ ..+||++ ++++.|++...|+..+.+
T Consensus 197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 197 PDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 58888888 9998764211 0 111 1578986 467999998877765543
No 241
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.85 E-value=2.1e-21 Score=162.67 Aligned_cols=120 Identities=24% Similarity=0.297 Sum_probs=92.5
Q ss_pred CCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354 60 YSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
..+.|.......+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++
T Consensus 6 l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (173)
T cd03246 6 VSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD 85 (173)
T ss_pred EEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC
Confidence 33444433345788899985 59999999999999999999999999987 99999988877666666777899999975
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 138 ~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
.. ++ .++.+++ -|+||+||++||++++ +|.++++| |+++.|.
T Consensus 86 ~~------~~-~tv~~~l---------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~ 129 (173)
T cd03246 86 EL------FS-GSIAENI---------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDV 129 (173)
T ss_pred cc------cc-CcHHHHC---------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCH
Confidence 21 11 1222211 3999999999999998 47787777 9998764
No 242
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.1e-21 Score=172.65 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=111.8
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (283)
...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ..++|++|++.
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG-----AERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-----CcEEEEeCCCccCCCCcHH
Confidence 35788899985 59999999999999999999999999987 99999887764321 34799998742
Q ss_pred HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----- 209 (283)
Q Consensus 139 ~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----- 209 (283)
+.+.++.... ....+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 168 (255)
T PRK11248 89 DNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ 168 (255)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 1111111000 11111223455677777766555666666 999999999999998 58888888 999865321
Q ss_pred --------hcCCc-----------ccccCEEEEEc--CCcccccC
Q 023354 210 --------KGGPG-----------ITQADLLVINK--TDLASAIG 233 (283)
Q Consensus 210 --------~~~~~-----------i~~ad~ivi~K--~g~i~~~g 233 (283)
+.+.+ ..+||++++++ .|++...+
T Consensus 169 ~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~ 213 (255)
T PRK11248 169 TLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERL 213 (255)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEe
Confidence 11222 16799999998 48876643
No 243
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.8e-21 Score=186.73 Aligned_cols=177 Identities=17% Similarity=0.133 Sum_probs=124.4
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HHHHHhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~~~~~ig 131 (283)
....+.++.| . ..+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.+|
T Consensus 266 l~~~~l~~~~-~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 266 FEVRNVTSRD-R---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEeCccccC-C---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 4455555543 1 36888999855 9999999999999999999999999987 999998887754333 23456799
Q ss_pred ccCCch----H-------HHHHhCCCC----C----C--ChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHH
Q 023354 132 ALPEER----I-------RAVETGGCP----H----A--AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFS 188 (283)
Q Consensus 132 ~v~q~~----~-------~~i~~~g~~----~----~--~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia 188 (283)
|++|++ . +.+.++... . . ........+.+.|+.++.. ...+..+.+ ||||+||+.||
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA 421 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS 421 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH
Confidence 999963 1 112222110 0 0 0111223455678888775 567777777 99999999999
Q ss_pred HHhc-CCcEEEEe-CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCCh
Q 023354 189 RELA-DYIIYIID-VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGAD 235 (283)
Q Consensus 189 ~al~-~~~l~llD-pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~ 235 (283)
++++ +|.|+|+| |+++.|... +.+.+ ..+||++++++.|++...++.
T Consensus 422 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 422 KWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9998 58888888 999976421 11222 167999999999998776544
No 244
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.85 E-value=3.2e-21 Score=187.63 Aligned_cols=185 Identities=16% Similarity=0.093 Sum_probs=125.3
Q ss_pred ccccccCCCCCCC---CCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEE-eec---CCCCC--
Q 023354 54 HSHEPIYSPGYFS---RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TND---IFTKE-- 122 (283)
Q Consensus 54 ~~~~~~~~~~~~~---~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~-~~d---~~~~~-- 122 (283)
.+...++...|.. .....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+. +.+ +....
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 3555666666643 2235789999985 59999999999999999999999999987 999985 432 22221
Q ss_pred -HHHHHHhccccCCchH--------HHHHhC-CCCCCChHHHHHHHHHHHHHccccc-----cCCCcccC-CchHHHHHH
Q 023354 123 -DGEFLMRNGALPEERI--------RAVETG-GCPHAAIREDISINLGPLEELSNLF-----KADLLLCE-SGGDNLAAN 186 (283)
Q Consensus 123 -~~~~~~~ig~v~q~~~--------~~i~~~-g~~~~~~~~~~~~~~~~l~~l~~~~-----~~d~~i~e-SgGq~q~~~ 186 (283)
...+++.+||++|++. +.+.+. ++ ..........+.+.++.++... ..+..+.+ |+||+||++
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence 1234557999999752 111111 11 1111111224456677776643 34666666 999999999
Q ss_pred HHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 187 FSRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 187 ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
||++++ +|.|+|+| |+++.|.. .+.+.++ .+||++++++.|++.+.|++.+++
T Consensus 438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999998 58888888 99997532 1112221 679999999999998877765543
No 245
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.85 E-value=3.7e-21 Score=169.08 Aligned_cols=168 Identities=17% Similarity=0.095 Sum_probs=119.2
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH-------
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------- 140 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------- 140 (283)
..+++++|... |++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... .++.++|++|++..+
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEEecChhhccCCcHHH
Confidence 57889999854 9999999999999999999999999987 999998887754332 346799999886311
Q ss_pred -HHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354 141 -VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------ 209 (283)
Q Consensus 141 -i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------ 209 (283)
+.+.... ..........+.+.++.+......+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~ 171 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS 171 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1111000 001111122345567777665555666666 999999999999998 58888888 999865321
Q ss_pred -------hcCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 210 -------KGGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 210 -------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+.+.+ ...||++++++.|++.+.++..+.+
T Consensus 172 ~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 172 WLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 11222 1579999999999998877765544
No 246
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.85 E-value=1.2e-21 Score=164.98 Aligned_cols=145 Identities=15% Similarity=0.149 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354 60 YSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
..+.|.....+.+.+++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|++
T Consensus 6 ~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~ 84 (178)
T cd03247 6 VSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRP 84 (178)
T ss_pred EEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEccCC
Confidence 334444333357888999855 9999999999999999999999999987 9999988766543 445667899999975
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh----
Q 023354 138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK---- 210 (283)
Q Consensus 138 ~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~---- 210 (283)
..+ + .+..+++ +.. |+||+||+.+|++++ +|.++++| |+++.|...+
T Consensus 85 ~~~------~-~tv~~~i-------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~ 138 (178)
T cd03247 85 YLF------D-TTLRNNL-------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138 (178)
T ss_pred eee------c-ccHHHhh-------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 211 1 1222111 223 999999999999998 58888888 9998764321
Q ss_pred -------cCCc----------ccccCEEEEEcCCcccc
Q 023354 211 -------GGPG----------ITQADLLVINKTDLASA 231 (283)
Q Consensus 211 -------~~~~----------i~~ad~ivi~K~g~i~~ 231 (283)
.+.+ +..||++++++.|.+.+
T Consensus 139 ~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~ 176 (178)
T cd03247 139 SLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176 (178)
T ss_pred HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 0111 14577888887777654
No 247
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=2e-21 Score=167.03 Aligned_cols=167 Identities=21% Similarity=0.171 Sum_probs=126.4
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~ 139 (283)
-++++++|..+ |+++|++|+|||||||++++|+|++.|+ |+|.+.+.++.+ ....+|||+|.+.- +
T Consensus 16 ~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGyLPEERGLy~k~tv~d 91 (300)
T COG4152 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGYLPEERGLYPKMTVED 91 (300)
T ss_pred eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcccChhhhccCccCcHHH
Confidence 47889999855 9999999999999999999999999997 999999988764 44578999998752 1
Q ss_pred HHH-hCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchh------
Q 023354 140 AVE-TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPR------ 209 (283)
Q Consensus 140 ~i~-~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~------ 209 (283)
.+. ++........+.......+|+.+.........+.+ |.|.+|++.+..++++ |-++++| |.+|+|.-.
T Consensus 92 ql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~ 171 (300)
T COG4152 92 QLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD 171 (300)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHH
Confidence 111 12111111222223456688888887777777777 9999999999999997 8888888 999976321
Q ss_pred ------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 210 ------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 210 ------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
..+.++ +.||++++++.|..+..|+...+..
T Consensus 172 ~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 172 AIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 112222 7899999999999999898766544
No 248
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.8e-21 Score=171.98 Aligned_cols=185 Identities=11% Similarity=0.002 Sum_probs=122.3
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCCC--CHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~~--~~~ 124 (283)
.+...++...|.. ...+++++|.. +|++++|+|+||||||||+++|+|++++ .|+|.+.+.++... ...
T Consensus 20 ~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 4555666666543 35788999985 5999999999999999999999999752 49999988877532 223
Q ss_pred HHHHhccccCCchHH-------HHHhCCCCCCChHHHHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHHhc
Q 023354 125 EFLMRNGALPEERIR-------AVETGGCPHAAIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA 192 (283)
Q Consensus 125 ~~~~~ig~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~al~ 192 (283)
.+++.++|++|++.. .+.++.............+.+.++.+.. ....+..+.+ |+||+||++||++++
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 456789999998531 1111110000000111122233444332 1234455555 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchhh---------c--CCc-----------ccccCEEEEEc---------CCcccccCChHHHH
Q 023354 193 -DYIIYIID-VSGGDKIPRK---------G--GPG-----------ITQADLLVINK---------TDLASAIGADLAVM 239 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~---------~--~~~-----------i~~ad~ivi~K---------~g~i~~~g~~~e~~ 239 (283)
+|.++++| |+++.|.... . ..+ ..+||++++++ .|++++.|++.+++
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 58888888 9998753211 0 111 16799999997 79999888887665
Q ss_pred h
Q 023354 240 E 240 (283)
Q Consensus 240 ~ 240 (283)
.
T Consensus 258 ~ 258 (274)
T PRK14265 258 G 258 (274)
T ss_pred h
Confidence 3
No 249
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.7e-21 Score=171.22 Aligned_cols=180 Identities=16% Similarity=0.100 Sum_probs=118.9
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC--CCHHHHHH
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEFLM 128 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~--~~~~~~~~ 128 (283)
.++.+.|. ....+++++|.. +|++++|+|+||||||||+++|+|+++| +|+|.+.+.++.. .....+++
T Consensus 8 ~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T PRK14272 8 QDVNIYYG--DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRR 85 (252)
T ss_pred eeeEEEEC--CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhc
Confidence 34444443 235788999984 5999999999999999999999999875 4999998887653 22345567
Q ss_pred hccccCCchHH--------HHHhCC-CCCCChHH-HHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHHhc-
Q 023354 129 RNGALPEERIR--------AVETGG-CPHAAIRE-DISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA- 192 (283)
Q Consensus 129 ~ig~v~q~~~~--------~i~~~g-~~~~~~~~-~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~al~- 192 (283)
.++|++|++.. .+.++. .......+ ..+.+.+.+..+.. ....+..+.+ |+||+||+++|++++
T Consensus 86 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 165 (252)
T PRK14272 86 RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV 165 (252)
T ss_pred eeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 79999998531 111110 00000111 11122223333322 1234555555 999999999999998
Q ss_pred CCcEEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 193 DYIIYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 193 ~~~l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+|.++++| |+++.|.... ...++ .+||++++++.|++.+.|++.+.+
T Consensus 166 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 166 EPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 58888888 9998653211 11221 579999999999999888776654
No 250
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=171.31 Aligned_cols=181 Identities=12% Similarity=0.037 Sum_probs=120.9
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhc---ccC---CCcEEEEeecCCCC--CHHHHHH
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF---LRD---KYSLAAVTNDIFTK--EDGEFLM 128 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~---~~~---~g~i~i~~~d~~~~--~~~~~~~ 128 (283)
.++...|.. ...+.+++|.. +|++++|+|+||||||||+++|+|+ +++ .|+|.+.+.++... ....+++
T Consensus 7 ~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14245 7 RDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRK 84 (250)
T ss_pred EEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhh
Confidence 344444432 34788889984 5999999999999999999999996 344 49999999887542 2345567
Q ss_pred hccccCCchHH-------HHHhCCCCCC-ChHH-HHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHHHhc-C
Q 023354 129 RNGALPEERIR-------AVETGGCPHA-AIRE-DISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 129 ~ig~v~q~~~~-------~i~~~g~~~~-~~~~-~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~al~-~ 193 (283)
.++|+||++.. .+.++..... ...+ ....+.+.++.++... ..+..+.+ |+||+||+++|++++ +
T Consensus 85 ~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (250)
T PRK14245 85 NVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVS 164 (250)
T ss_pred heEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 89999997531 1111100000 0011 1123445566665432 23444555 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|.++++| |+++.|...+ .+.+ .++||++++++.|++.+.|+..+.+.
T Consensus 165 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 165 PSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 8888888 9998653210 1112 16799999999999999887766653
No 251
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.2e-21 Score=169.78 Aligned_cols=180 Identities=13% Similarity=0.065 Sum_probs=120.2
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC-CCHHHHHH
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT-KEDGEFLM 128 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~-~~~~~~~~ 128 (283)
..++.+.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++| .|+|.+.+.++.. .+...+++
T Consensus 6 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 6 IENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred EeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence 3444555532 35789999985 4999999999999999999999999875 4999998887642 33445667
Q ss_pred hccccCCchHH-------HHHhCCCCC-CChHHHH-HHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354 129 RNGALPEERIR-------AVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 129 ~ig~v~q~~~~-------~i~~~g~~~-~~~~~~~-~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~-~ 193 (283)
.++|++|++.. .+.++.... ....... ..+.+.++.+... ...+..+.+ |+||+||+.||++++ +
T Consensus 84 ~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (249)
T PRK14253 84 KVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAME 163 (249)
T ss_pred heeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcC
Confidence 89999998531 111111000 0111111 1233344444321 233455555 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHH
Q 023354 194 YIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
|.|+++| |+++.|.... ...+ ..+||++++++.|++...|+..+.
T Consensus 164 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 164 PDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8888888 9998653211 0112 157999999999999988776544
No 252
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=3.2e-21 Score=168.21 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=119.2
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-HHHHhC-
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETG- 144 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~i~~~- 144 (283)
-++..+++|..+ |++++++|+|||||||+||+|+|++.|+ |.|.+.+.+++. +..+..+.+++|+.... ...+++
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence 358889999865 9999999999999999999999999998 999999998875 45566778888764432 111111
Q ss_pred -------CCCCCChHHHHHHHHHHHHH-ccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchh----
Q 023354 145 -------GCPHAAIREDISINLGPLEE-LSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPR---- 209 (283)
Q Consensus 145 -------g~~~~~~~~~~~~~~~~l~~-l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~---- 209 (283)
...+.-....+...+..|.+ +.+......++-. |-||+.|+.+|.+|.+ |.|+++| ||-|+|...
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 00000011223333333333 3333344555544 9999999999999996 7788887 998876432
Q ss_pred ---------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 210 ---------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 210 ---------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++..+ .+.|++|++++.|+++++|+..+..+
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 22222 27899999999999999987765443
No 253
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.85 E-value=6.5e-21 Score=184.66 Aligned_cols=169 Identities=14% Similarity=0.070 Sum_probs=119.7
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC--C-CcEEEEeecCCCCCHHHH-HHhccccCCchH-----
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI----- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~----- 138 (283)
...+++++|.. +|++++|+||||||||||+++|+|+++| + |+|.+.+.++...+.... ++.+||+||++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 35788999985 5999999999999999999999999986 4 999999888765544333 456999999753
Q ss_pred ---HHHHhCCCCC-----CChHHHHHHHHHHHHHccccccC-CCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 139 ---RAVETGGCPH-----AAIREDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 139 ---~~i~~~g~~~-----~~~~~~~~~~~~~l~~l~~~~~~-d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
+.+.++.... ....+....+.+.++.+...... +..+.+ ||||+||++||++++ +|.++++| |+++.|
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD 173 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173 (500)
T ss_pred cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 1222221110 01112223455677777765443 455666 999999999999998 58888888 999975
Q ss_pred chh------------hcCCcc-----------cccCEEEEEcCCcccccCChHH
Q 023354 207 IPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLA 237 (283)
Q Consensus 207 l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e 237 (283)
... +.+.++ .+||+|++++.|++...+++.+
T Consensus 174 ~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 174 EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 321 112221 6799999999999987665543
No 254
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.3e-21 Score=172.48 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=125.8
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCCC-HHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE-DGE 125 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~~-~~~ 125 (283)
.....++.+.|.. ...+.+++|.. +|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.... ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4566677777653 35788999985 5999999999999999999999999885 4 99999888776543 345
Q ss_pred HHHhccccCCchH-------HHHHhCCCCC--CChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHHHh
Q 023354 126 FLMRNGALPEERI-------RAVETGGCPH--AAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 126 ~~~~ig~v~q~~~-------~~i~~~g~~~--~~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~al 191 (283)
+++.++|++|++. +.+.++.... ....+....+.+.++.+.... ..+..+.+ |+||+||++|||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral 178 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 5678999999753 1121111100 111111112334555554432 23344445 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+ +|.|+++| |+++.|.... ...+ ..+||++++++.|++...|+..+.+.
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 8 58888888 9998653211 0112 16799999999999998887766543
No 255
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.5e-21 Score=171.45 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=116.1
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCCC--HHHHHHhccccCCchHH
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIR 139 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~~ 139 (283)
...+++++|.. +|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++.... ...+++.++|++|++..
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 35788999984 599999999999999999999999975 34 99999887764322 22456789999998531
Q ss_pred -------HHHhCC-C-CCC-ChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354 140 -------AVETGG-C-PHA-AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (283)
Q Consensus 140 -------~i~~~g-~-~~~-~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt 202 (283)
.+.++. . ... ........+.+.++.++... ..+..+.+ |+||+||+++|++++ +|.++++| |+
T Consensus 98 ~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 177 (251)
T PRK14244 98 FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPC 177 (251)
T ss_pred ccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 111110 0 000 01111123445666665532 23444555 999999999999998 58888887 99
Q ss_pred CCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 203 GGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 203 ~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
++.|...+ .+.+ ..+||++++++.|++.+.++..+.+
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 178 SALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 98653211 1122 1579999999999998877765543
No 256
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.1e-21 Score=169.66 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=124.8
Q ss_pred CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC--CCH
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KED 123 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~--~~~ 123 (283)
+.+.+.++.+.|.. ...+.+++|.. +|++++|+|+||||||||+++|+|+++| .|+|.+.+.++.. ...
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 34556666666643 24788899985 5999999999999999999999999987 4888888877642 223
Q ss_pred HHHHHhccccCCchH-------HHHHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHH
Q 023354 124 GEFLMRNGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSR 189 (283)
Q Consensus 124 ~~~~~~ig~v~q~~~-------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~ 189 (283)
..+++.++|++|++. +.+.++..... ...+....+.+.++.+... ...+..+.+ |+||+||+++|+
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 355677999998753 11111100000 1111112334455555432 233555555 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcC-----CcccccCChHHH
Q 023354 190 ELA-DYIIYIID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKT-----DLASAIGADLAV 238 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~-----g~i~~~g~~~e~ 238 (283)
+++ +|.++++| |+++.|... +.+.++ ++||+|++++. |+++..|++.++
T Consensus 164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 243 (261)
T PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKI 243 (261)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHH
Confidence 998 58888888 999865321 112221 68999999998 999888887776
Q ss_pred Hh
Q 023354 239 ME 240 (283)
Q Consensus 239 ~~ 240 (283)
+.
T Consensus 244 ~~ 245 (261)
T PRK14258 244 FN 245 (261)
T ss_pred Hh
Confidence 54
No 257
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.9e-21 Score=170.44 Aligned_cols=183 Identities=12% Similarity=0.041 Sum_probs=121.5
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc--C----CCcEEEEeecCCCC--CHHH
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D----KYSLAAVTNDIFTK--EDGE 125 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~--~----~g~i~i~~~d~~~~--~~~~ 125 (283)
+.+.++.+.|.. ...+++++|.. +|++++|+||||||||||+++|+|++. | .|+|.+.+.++... ....
T Consensus 7 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 7 LSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred EEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 444555555532 35788999985 499999999999999999999999865 2 49999998877643 2345
Q ss_pred HHHhccccCCchHHH-------HHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354 126 FLMRNGALPEERIRA-------VETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 126 ~~~~ig~v~q~~~~~-------i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
+++.++|++|++..+ +.++..... ........+.+.++.+... ...+..+.+ |+||+||+.+|+++
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 567799999986321 111110000 0011111233444444331 223445555 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc----------c-cccCEEEEEcCCcccccCChHHHH
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG----------I-TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i-~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+ +|.++++| |+++.|.... ...+ + ..||++++++.|++...|+..+.+
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 8 58888888 9998753211 0112 1 579999999999998888776554
No 258
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.9e-21 Score=170.13 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=120.4
Q ss_pred ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCC--CHHHH
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEF 126 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~--~~~~~ 126 (283)
.+.++.+.|.. .+.+.+++|.. +|++++|+|+||||||||+++|+|+++| + |+|.+.+.++... ....+
T Consensus 5 ~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 5 EIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 34445555532 35788999985 5999999999999999999999999873 5 9999988876532 12345
Q ss_pred HHhccccCCchHH-------HHHhCCCCCC-ChHH-HHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHHHhc
Q 023354 127 LMRNGALPEERIR-------AVETGGCPHA-AIRE-DISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA 192 (283)
Q Consensus 127 ~~~ig~v~q~~~~-------~i~~~g~~~~-~~~~-~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~al~ 192 (283)
++.++|++|++.. .+.++..... .... ....+.+.++.++... ..+..+.+ |+||+||+++|++++
T Consensus 83 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~ 162 (250)
T PRK14262 83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA 162 (250)
T ss_pred hhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 6779999998531 1111100000 0111 1112334455544321 23555555 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 193 -DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+|.++++| |+++.|...+ ...+ ..+||++++++.|++...|+..+..
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 163 VEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 58788877 9998753211 0112 1679999999999999888766554
No 259
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=9.6e-21 Score=168.90 Aligned_cols=172 Identities=16% Similarity=0.091 Sum_probs=116.7
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCC--CHHHHHHhccccCCchHH
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERIR 139 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~~ 139 (283)
...+++++|..+ |++++|+|+||||||||+++|+|+++| + |+|.+.+.++... ....+++.++|++|++..
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 457888999854 999999999999999999999999975 4 9999999887532 233456779999998631
Q ss_pred -------HHHhCCCCCCChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354 140 -------AVETGGCPHAAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (283)
Q Consensus 140 -------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~ 205 (283)
.+.++........+....+.+.++.+.+.. ..+..+.+ |+||+||+.+||+++ +|.++++| |+++.
T Consensus 101 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgL 180 (261)
T PRK14263 101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSAL 180 (261)
T ss_pred ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 111111100011111123445566554422 22333444 999999999999998 58888888 99997
Q ss_pred Cchh-----------hcCCc-----------ccccCEEEEEc--------CCcccccCChHHHHh
Q 023354 206 KIPR-----------KGGPG-----------ITQADLLVINK--------TDLASAIGADLAVME 240 (283)
Q Consensus 206 ~l~~-----------~~~~~-----------i~~ad~ivi~K--------~g~i~~~g~~~e~~~ 240 (283)
|... ....+ ..+||++++++ .|++++.|+..+.+.
T Consensus 181 D~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 181 DPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence 5321 01112 16799999996 789988887766543
No 260
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.4e-21 Score=169.30 Aligned_cols=183 Identities=14% Similarity=0.043 Sum_probs=121.8
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHHH
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGE 125 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~~ 125 (283)
+.+.++.+.|.. .+.+++++|.. +|++++|+|+||||||||+++|+|+++ |. |+|.+.+.++... ....
T Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 5 ISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred EEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 344555555542 35788899985 599999999999999999999999986 34 9999998876532 2234
Q ss_pred HHHhccccCCchHH-------HHHhCCCCC-CChHHHH-HHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354 126 FLMRNGALPEERIR-------AVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 126 ~~~~ig~v~q~~~~-------~i~~~g~~~-~~~~~~~-~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
+++.++|++|++.. .+.++.... ....+.. ..+.+.++.++.. ...+..+.+ |+||+||+++|+++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 56679999988531 111110000 0001111 1233455555442 233555555 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+ +|.++++| |+++.|.... ...+ ..+||++++++.|++...++..+.+
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 8 58888888 9998653211 1112 1579999999999998887776554
No 261
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.6e-21 Score=171.82 Aligned_cols=184 Identities=14% Similarity=0.075 Sum_probs=123.2
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCC--CCHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~--~~~~ 124 (283)
.....++.+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++.. ....
T Consensus 24 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 4556666666643 35788999985 599999999999999999999999986 45 999998887743 2334
Q ss_pred HHHHhccccCCchH-------HHHHhCC-CCCCChHHHH-HHHHHHHHHcc----ccccCCCcccC-CchHHHHHHHHHH
Q 023354 125 EFLMRNGALPEERI-------RAVETGG-CPHAAIREDI-SINLGPLEELS----NLFKADLLLCE-SGGDNLAANFSRE 190 (283)
Q Consensus 125 ~~~~~ig~v~q~~~-------~~i~~~g-~~~~~~~~~~-~~~~~~l~~l~----~~~~~d~~i~e-SgGq~q~~~ia~a 190 (283)
.+++.++|++|++. +.+.++. .......... ..+.+.++.+. .....+..+.+ |+||+||++||++
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lara 181 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARC 181 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 56678999999853 1121110 0000011111 12233344332 12233455555 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
++ +|.++++| |+++.|.... ...+ ..+||++++++.|++...|+..+.+
T Consensus 182 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 182 LAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 98 58888888 9998753211 0112 1579999999999998888766554
No 262
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.2e-21 Score=184.01 Aligned_cols=178 Identities=16% Similarity=0.069 Sum_probs=124.9
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig 131 (283)
+...++++.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... .+++.+|
T Consensus 5 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 5 LSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred EEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 334455555532 34788999985 59999999999999999999999999987 9999988887544332 3456799
Q ss_pred ccCCchH--------HHHHhCCCCC--C--ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354 132 ALPEERI--------RAVETGGCPH--A--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~~--~--~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ 197 (283)
|++|++. +.+.++.... . ...+....+.+.++.+++....+..+.+ ||||+||++||++++ +|.|+
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999753 1222221111 1 1112223456678888776666777777 999999999999998 58888
Q ss_pred EEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCC
Q 023354 198 IID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGA 234 (283)
Q Consensus 198 llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~ 234 (283)
|+| |+++.|... +.+.++ .+||++++++.|.+...++
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 888 999875321 112221 6799999999999876443
No 263
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=182.79 Aligned_cols=174 Identities=21% Similarity=0.189 Sum_probs=123.4
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhccccCCchH--------
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI-------- 138 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~-------- 138 (283)
..+.+++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+. .+++.++|++|++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 36788888854 9999999999999999999999999987 9999988777543333 34457999999752
Q ss_pred ---HHHHhCCCCC----C---ChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 139 ---RAVETGGCPH----A---AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 139 ---~~i~~~g~~~----~---~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
+.+.++.... . ........+.+.++.++.. ...+..+.+ ||||+||+.||++++ +|.|+++| ||++
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 1121211110 0 0111223455678888763 456777777 999999999999998 58888888 9999
Q ss_pred CCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354 205 DKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDA 243 (283)
Q Consensus 205 ~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~ 243 (283)
.|... +.+.+ ..+||++++++.|++.+.|+..+.....+
T Consensus 427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~ 488 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQA 488 (501)
T ss_pred CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCCHHHH
Confidence 76431 11222 16899999999999988877655443333
No 264
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=8.3e-21 Score=157.02 Aligned_cols=171 Identities=14% Similarity=0.101 Sum_probs=124.1
Q ss_pred CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------- 139 (283)
Q Consensus 70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------- 139 (283)
.+...++|+ .+|..++|+|.||||||||.|+|+|.+.|+ |+|.+++..+.--+-..+.+.|-++||++..
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 367788888 459999999999999999999999999998 9999999887655555566789999999851
Q ss_pred --HHHhCCCCC--CChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC-----
Q 023354 140 --AVETGGCPH--AAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK----- 206 (283)
Q Consensus 140 --~i~~~g~~~--~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~----- 206 (283)
.++.+.... .+.......+.+.|..+++... .+..+.- |.||+||+++||||. +|.|++.| +-.+.|
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrs 186 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRS 186 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHH
Confidence 111111111 1222333456677777766543 3333333 999999999999997 78888877 555432
Q ss_pred --------chhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 207 --------IPRKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 207 --------l~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++++.+.. -..+|.|+++..|.+++.|++.+++.
T Consensus 187 Ql~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 187 QLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhc
Confidence 33333322 16799999999999999999988876
No 265
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.84 E-value=3.5e-21 Score=167.62 Aligned_cols=161 Identities=17% Similarity=0.076 Sum_probs=113.9
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------- 139 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------- 139 (283)
...+.+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... . .+.++|+||++..
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEEEcCCCCccccCCHH
Confidence 35788889984 59999999999999999999999999987 9999888765421 1 2478999887521
Q ss_pred -HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354 140 -AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------ 209 (283)
Q Consensus 140 -~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------ 209 (283)
.+.+....... ....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 89 ~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 165 (223)
T TIGR03740 89 ENLKVHTTLLGL---PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE 165 (223)
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHH
Confidence 11110000000 012344566777666656666666 999999999999998 58888888 999875321
Q ss_pred ------hcCCc-----------ccccCEEEEEcCCcccccCChH
Q 023354 210 ------KGGPG-----------ITQADLLVINKTDLASAIGADL 236 (283)
Q Consensus 210 ------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~ 236 (283)
+.+.+ ..+||++++++.|++...|++.
T Consensus 166 ~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 166 LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 11112 1679999999999998876543
No 266
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.8e-21 Score=173.68 Aligned_cols=184 Identities=17% Similarity=0.142 Sum_probs=122.3
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~ 124 (283)
.+...++.+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+.. |+ |+|.+.+.++... ...
T Consensus 39 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 39 HVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred EEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 3455566666643 34788999985 599999999999999999999999854 36 9999988776532 223
Q ss_pred HHHHhccccCCchHH-------HHHhCCCCC-CChHH-HHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHH
Q 023354 125 EFLMRNGALPEERIR-------AVETGGCPH-AAIRE-DISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRE 190 (283)
Q Consensus 125 ~~~~~ig~v~q~~~~-------~i~~~g~~~-~~~~~-~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~a 190 (283)
.+++.++|++|++.. .+.++.... ..... ....+.+.++.++. ....+..+.+ |+||+||+.||++
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra 196 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVART 196 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHH
Confidence 456789999998631 111111000 00011 11223344555443 2234555555 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchh---------h--cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 191 LA-DYIIYIID-VSGGDKIPR---------K--GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~---------~--~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
++ +|.++|+| |+++.|... + ...+ ..+||++++++.|++...|+..+.+
T Consensus 197 L~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 197 LAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 98 58888888 999875321 1 0111 1579999999999999888766554
No 267
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.84 E-value=4.7e-21 Score=164.59 Aligned_cols=139 Identities=16% Similarity=0.097 Sum_probs=101.0
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHHHHhccccCCchHHH---
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIRA--- 140 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~~~~ig~v~q~~~~~--- 140 (283)
..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|++|++..+
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence 5788999984 59999999999999999999999999987 999999887653321 23456799999986311
Q ss_pred -----HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 141 -----VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 141 -----i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
+.++.... ....+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus 92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~ 168 (206)
T TIGR03608 92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPK 168 (206)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHH
Confidence 11110000 01111223445677777766666777777 999999999999998 58888888 99997653
No 268
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.84 E-value=1.7e-20 Score=163.41 Aligned_cols=157 Identities=21% Similarity=0.248 Sum_probs=110.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH----------HHHhCCCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR----------AVETGGCP 147 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~----------~i~~~g~~ 147 (283)
.+|++++|+|+||||||||+++|+|+++|+ |+|.+++.++. ..++.++|++|++.. .+.++...
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 469999999999999999999999999987 99999887642 234679999997521 11122110
Q ss_pred C-----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----------
Q 023354 148 H-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------- 209 (283)
Q Consensus 148 ~-----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------- 209 (283)
. .........+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~ 158 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIE 158 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0 00112223455677777766656666666 999999999999998 48888887 999875321
Q ss_pred --hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 210 --KGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 210 --~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+.+.+ ...||+++++ .|++...|+..+....
T Consensus 159 ~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 159 LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 11222 1579999998 6999888877666554
No 269
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=8.6e-21 Score=183.86 Aligned_cols=168 Identities=15% Similarity=0.156 Sum_probs=120.4
Q ss_pred CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhccccCCchH---------
Q 023354 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------- 138 (283)
Q Consensus 71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~--------- 138 (283)
.+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... .+++.+||++|++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 5788888854 9999999999999999999999999987 9999998887654433 34557999999841
Q ss_pred --HHHHhCCCC---C----CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354 139 --RAVETGGCP---H----AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (283)
Q Consensus 139 --~~i~~~g~~---~----~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~ 205 (283)
+.+.++... . ....+....+.+.++.++.. ...+..+.+ |+||+||+.||++++ +|.++++| |+++.
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 112221110 0 01112223455678887774 456777777 999999999999998 58888888 99997
Q ss_pred Cchhh------------cCCc-----------ccccCEEEEEcCCcccccCChHHH
Q 023354 206 KIPRK------------GGPG-----------ITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 206 ~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
|.... .+.+ ..+||++++++.|++...++..+.
T Consensus 427 D~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 64211 1112 167999999999999876665544
No 270
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=6.2e-21 Score=197.84 Aligned_cols=190 Identities=16% Similarity=0.137 Sum_probs=147.4
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.|.+.+.+....|.+...++|++++|..+ ||+|||+|+.|||||||+++|.++..|. |+|.+++.|+.+..-.++|++
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence 58899999999999999999999999966 9999999999999999999999999977 999999999999999999999
Q ss_pred ccccCCchHHHHH---hCCCCCCCh-HHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhcC-Cc
Q 023354 130 NGALPEERIRAVE---TGGCPHAAI-REDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELAD-YI 195 (283)
Q Consensus 130 ig~v~q~~~~~i~---~~g~~~~~~-~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~~-~~ 195 (283)
++++||+|..+-. .+..|.... .+.+..+++ .|..+. ...++|..+.| |.||||-+++||||.. ..
T Consensus 1216 lsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred CeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence 9999999964432 233333321 222222222 122222 22357888877 9999999999999995 78
Q ss_pred EEEEe-CCCCCCch----------hhc-----------CCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354 196 IYIID-VSGGDKIP----------RKG-----------GPGITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 196 l~llD-pt~g~~l~----------~~~-----------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
|+++| +|..-|.. .+. ..++-.+|+|++++.|++.+.|+|.+++.+
T Consensus 1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred EEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhC
Confidence 88888 77654321 111 123467999999999999999999887753
No 271
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=2e-20 Score=181.73 Aligned_cols=169 Identities=16% Similarity=0.133 Sum_probs=120.6
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhccccCCchH---------
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------- 138 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~--------- 138 (283)
.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....... +++.++|+||++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 478888884 59999999999999999999999999987 99999888876554443 3456999999741
Q ss_pred --HHHHhC--C-CCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 139 --RAVETG--G-CPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 139 --~~i~~~--g-~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
+.+... . ... .........+.+.|+.++.. ...+..+.+ |+||+||+.||++++ +|.|+|+| |+++.|..
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 111110 0 000 01111122345678888775 566777777 999999999999998 58888888 99997642
Q ss_pred hh------------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 209 RK------------GGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 209 ~~------------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.. .+.++ .+||++++++.|++...+++.++.
T Consensus 438 ~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 11 12221 679999999999998877665443
No 272
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8.9e-21 Score=167.94 Aligned_cols=184 Identities=14% Similarity=0.031 Sum_probs=121.5
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cC----CCcEEEEeecCCCC--CHHH
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RD----KYSLAAVTNDIFTK--EDGE 125 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~----~g~i~i~~~d~~~~--~~~~ 125 (283)
....++.+.|.. ...+++++|.. +|++++|+||||||||||+++|+|++ .| +|+|.+.+.++... ....
T Consensus 6 l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 6 LQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred EEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 334455555542 35788999985 59999999999999999999999985 35 49999998877532 2234
Q ss_pred HHHhccccCCchHH-------HHHhCCCCC-CChHHH-HHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354 126 FLMRNGALPEERIR-------AVETGGCPH-AAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 126 ~~~~ig~v~q~~~~-------~i~~~g~~~-~~~~~~-~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
+++.++|++|++.. .+.++.... ...... ...+.+.++.+... ...+..+.+ |+||+||+++|+++
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 56679999998531 111110000 001111 12233445555431 223455555 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+ +|.++++| |+++.|.... ...+ ..+||++++++.|++.+.|+..+.+.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 8 58888888 9998653211 0112 16799999999999998887766543
No 273
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.9e-21 Score=168.28 Aligned_cols=182 Identities=15% Similarity=0.079 Sum_probs=120.2
Q ss_pred ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC------CcEEEEeecCCCC--CHHHH
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK------YSLAAVTNDIFTK--EDGEF 126 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~------g~i~i~~~d~~~~--~~~~~ 126 (283)
...+..+.|.. ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....+
T Consensus 6 ~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 6 KIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred EEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 33445555532 34788999984 59999999999999999999999999874 8999988876532 23355
Q ss_pred HHhccccCCchHH-------HHHhCCCCCC-ChHHHH-HHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc
Q 023354 127 LMRNGALPEERIR-------AVETGGCPHA-AIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA 192 (283)
Q Consensus 127 ~~~ig~v~q~~~~-------~i~~~g~~~~-~~~~~~-~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~ 192 (283)
++.++|++|++.. .+.++..... ...+.. ..+.+.+..+... ...+..+.+ |+||+||+++||+++
T Consensus 84 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 163 (251)
T PRK14249 84 RKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA 163 (251)
T ss_pred hceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 6789999998631 1111111000 111111 1222334443321 223444555 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 193 -DYIIYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+|.++++| |+++.|.... .+.++ ..||++++++.|.+...|+..+.+
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 164 IEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 58888888 9998753211 11221 578999999999998887766554
No 274
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=6.9e-21 Score=185.32 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=118.9
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEe-----------------------ecC---
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVT-----------------------NDI--- 118 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~-----------------------~d~--- 118 (283)
...+++++|.. +|++++|+||||||||||+++|+|++ +|+ |+|.+.+ .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 35788999985 59999999999999999999999996 576 9998862 111
Q ss_pred ----CCCCH---HHHHHhccccCCch-H--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-Cch
Q 023354 119 ----FTKED---GEFLMRNGALPEER-I--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGG 180 (283)
Q Consensus 119 ----~~~~~---~~~~~~ig~v~q~~-~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgG 180 (283)
..... ..+++.++|++|++ . +.+.++.... ....+....+.+.++.+++....+..+.+ |||
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 172 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGG 172 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHH
Confidence 01011 23456799999962 1 1122211000 11122223456678888776666777777 999
Q ss_pred HHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCC
Q 023354 181 DNLAANFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGA 234 (283)
Q Consensus 181 q~q~~~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~ 234 (283)
|+||++||++++ +|.++|+| |+++.|.. ++.+.++ .+||++++++.|++...|+
T Consensus 173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~ 252 (520)
T TIGR03269 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGT 252 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecC
Confidence 999999999999 58888888 99986532 1112221 6799999999999988777
Q ss_pred hHHHHhH
Q 023354 235 DLAVMER 241 (283)
Q Consensus 235 ~~e~~~~ 241 (283)
..+.+..
T Consensus 253 ~~~~~~~ 259 (520)
T TIGR03269 253 PDEVVAV 259 (520)
T ss_pred HHHHHHH
Confidence 6665543
No 275
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.84 E-value=1.7e-20 Score=201.98 Aligned_cols=183 Identities=17% Similarity=0.093 Sum_probs=132.4
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+....|......++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ...++++.+||
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~ 1007 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGM 1007 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEE
Confidence 3344444455433456889999985 59999999999999999999999999998 999999988754 33456678999
Q ss_pred cCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 133 LPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 133 v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
+||+.. +.+.+..... ....+....+.+.|+.+++....+..+.+ ||||+||+++|++++ +|.|+++|
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE 1087 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 999853 2222211111 11112223456678888887777877777 999999999999998 58888877
Q ss_pred CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 201 VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 201 pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
|++|.|...+ .+.++ ..||+|++++.|++...|++..+
T Consensus 1088 PTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1088 PTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred CCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999764211 12221 57999999999999998877654
No 276
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.84 E-value=6.7e-21 Score=205.12 Aligned_cols=183 Identities=16% Similarity=0.101 Sum_probs=131.7
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+.+..|......++++++|..+ |++++|+||||||||||+|+|+|+++|+ |+|.+.+.++.. ...+.++.+||
T Consensus 1938 L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy 2016 (2272)
T TIGR01257 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGY 2016 (2272)
T ss_pred EEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEE
Confidence 33444444454333568999999855 9999999999999999999999999998 999999988754 33455678999
Q ss_pred cCCchH--------HHHHhCCCCCCChHHH-HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 133 LPEERI--------RAVETGGCPHAAIRED-ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 133 v~q~~~--------~~i~~~g~~~~~~~~~-~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
+||... +.+.+.+.......+. ...+.+.|+.+++....+..+.+ ||||+||+.+|++++ +|.|+++|
T Consensus 2017 ~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE 2096 (2272)
T TIGR01257 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE 2096 (2272)
T ss_pred EeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999752 1222211111111111 22344577888777777888877 999999999999998 48888877
Q ss_pred CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354 201 VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 201 pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
|++|.|... +.+.++ .+||+|++++.|++...|++.+.
T Consensus 2097 PTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2097 PTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999976421 112221 57999999999999998887654
No 277
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.3e-21 Score=169.37 Aligned_cols=185 Identities=15% Similarity=0.080 Sum_probs=122.5
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC--CCHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~--~~~~ 124 (283)
.+...++.+.|.. ...+.+++|.. +|++++|+|+||||||||+++|+|+++| +|+|.+.+.++.. ....
T Consensus 7 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 3445555555542 35788999985 5999999999999999999999999873 4999998887643 2234
Q ss_pred HHHHhccccCCchHHH-------HHhCCCCCC-ChH-HHHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHH
Q 023354 125 EFLMRNGALPEERIRA-------VETGGCPHA-AIR-EDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRE 190 (283)
Q Consensus 125 ~~~~~ig~v~q~~~~~-------i~~~g~~~~-~~~-~~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~a 190 (283)
.++..++|++|++..+ +.++..... ... +....+.+.++.++. ....+..+.+ |+||+||++||++
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 4567899999986311 111100000 001 111223344555443 2234555556 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEc-----CCcccccCChHHHHh
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINK-----TDLASAIGADLAVME 240 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K-----~g~i~~~g~~~e~~~ 240 (283)
++ +|.++++| |+++.|...+ ...+ ..+||++++++ .|+++..|++.+.+.
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS 243 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence 98 58888888 9998763211 0112 16799999998 489988888776643
No 278
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.84 E-value=1.1e-20 Score=173.52 Aligned_cols=153 Identities=22% Similarity=0.173 Sum_probs=110.9
Q ss_pred EEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHhCCCC-CCChHHHH
Q 023354 86 IGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCP-HAAIREDI 155 (283)
Q Consensus 86 ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~~g~~-~~~~~~~~ 155 (283)
|+||||||||||+++|+|+++|+ |+|.+.+.++..... .++.++|++|++. +.+.++... .....+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999987 999999988765443 3467999999853 112222110 11111112
Q ss_pred HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCc-----
Q 023354 156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPG----- 214 (283)
Q Consensus 156 ~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~----- 214 (283)
..+.+.++.+++....+..+.+ |+||+||++|||+++ +|.++++| |+++.|.. ++.+.+
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivT 158 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVT 158 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3455677777777667777777 999999999999998 58888888 99986532 111222
Q ss_pred ------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 215 ------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 215 ------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
..+||++++++.|++...|++.+++.
T Consensus 159 Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 159 HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 15799999999999998888877765
No 279
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=167.80 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=122.9
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe------ecCCCCCHHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT------NDIFTKEDGE 125 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~------~d~~~~~~~~ 125 (283)
.+...+.+..|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+ .++.......
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 3444555555532 45789999985 59999999999999999999999999886 7766554 3443344455
Q ss_pred HHHhccccCCchHH--------HHHhCCCCCC-ChHHHH-HHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHH
Q 023354 126 FLMRNGALPEERIR--------AVETGGCPHA-AIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRE 190 (283)
Q Consensus 126 ~~~~ig~v~q~~~~--------~i~~~g~~~~-~~~~~~-~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~a 190 (283)
+++.++|++|++.. .+.++..... ...... ..+.+.++.+... ...+..+.. |+||+||+++|++
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 67789999998531 1111111000 111111 2344556665543 223444555 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh-----------cCCc----------c-cccCEEEEEcCCcccccCChHHHHh
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG----------I-TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i-~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++ +|.++++| |+++.|...+ ...+ + ..||++++++.|++...|+..+.+.
T Consensus 168 l~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 168 LALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 98 58888888 9998754311 0112 1 6799999999999988887766553
No 280
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=1.4e-20 Score=154.04 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=118.4
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HH-HHhccccCCchH-----
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EF-LMRNGALPEERI----- 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~-~~~ig~v~q~~~----- 138 (283)
..+..+++.. +|+.++|+||+||||||||-.|+|+..|+ |+|.+.+.++.+.+.. .+ .+++|+|||...
T Consensus 24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 4678888875 49999999999999999999999999998 9999999999887642 22 346999999763
Q ss_pred ---HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCC-----
Q 023354 139 ---RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDK----- 206 (283)
Q Consensus 139 ---~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~----- 206 (283)
+.+.++..... ...+......+.|+.+++......+..+ |||++||++|||+++- |.|++-| ||...|
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~ 183 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence 22222211111 1222334566788999888877777777 9999999999999994 8888888 776543
Q ss_pred --------chhhcCCcc----------cccCEEEEEcCCcccc
Q 023354 207 --------IPRKGGPGI----------TQADLLVINKTDLASA 231 (283)
Q Consensus 207 --------l~~~~~~~i----------~~ad~ivi~K~g~i~~ 231 (283)
++++.+.++ ..|+|.+-+..|++..
T Consensus 184 ~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 184 KIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 122333321 5688888888887764
No 281
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.84 E-value=1.6e-20 Score=181.99 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=124.8
Q ss_pred cccccCCCCCCCC-CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-C-CcEEEEeecCCCCCH-HHHHHh
Q 023354 55 SHEPIYSPGYFSR-RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTKED-GEFLMR 129 (283)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~-g~i~i~~~d~~~~~~-~~~~~~ 129 (283)
....+.+..|... ....+++++|.. +|++++|+||||||||||+++|+|+++| + |+|.+.+.++..... ..+++.
T Consensus 258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (500)
T TIGR02633 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337 (500)
T ss_pred EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 4555666555322 335788999984 5999999999999999999999999984 4 999998887754333 345667
Q ss_pred ccccCCchH-----------HHHHhCCC---CC---CChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHH
Q 023354 130 NGALPEERI-----------RAVETGGC---PH---AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRE 190 (283)
Q Consensus 130 ig~v~q~~~-----------~~i~~~g~---~~---~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~a 190 (283)
+||++|++. +.+.++.. .. .........+.+.++.+.... ..+..+.+ |+||+||+.||++
T Consensus 338 i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~a 417 (500)
T TIGR02633 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKM 417 (500)
T ss_pred CEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHH
Confidence 999999841 11112111 00 011111234556788887753 46777777 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh------------cCCc-----------ccccCEEEEEcCCcccccCC
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK------------GGPG-----------ITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~~g~ 234 (283)
++ +|.++|+| ||++.|.... .+.+ .++||++++++.|++....+
T Consensus 418 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 98 58888888 9999764311 1222 16799999999999876543
No 282
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=169.08 Aligned_cols=184 Identities=13% Similarity=0.060 Sum_probs=122.9
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCC--CHH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDG 124 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~--~~~ 124 (283)
.+...++.+.|.. ...+.+++|.. +|++++|+|+||||||||+++|+|++++ + |+|.+.+.++... ...
T Consensus 25 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 25 ALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred EEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 3555566666642 35788899985 5999999999999999999999999873 4 9999998887542 234
Q ss_pred HHHHhccccCCchHH-------HHHhC-CCCCCChHHH-HHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHH
Q 023354 125 EFLMRNGALPEERIR-------AVETG-GCPHAAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRE 190 (283)
Q Consensus 125 ~~~~~ig~v~q~~~~-------~i~~~-g~~~~~~~~~-~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~a 190 (283)
.+++.++|++|++.. .+.++ .......... ...+.+.++.+... ...+..+.+ |+||+||+++|++
T Consensus 103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 182 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA 182 (272)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence 556789999997531 11111 0000001111 11233445544332 223445555 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
++ +|.++++| |+++.|.... ...+ .+.||++++++.|++...|+..+.+
T Consensus 183 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 183 IAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 98 58888888 9998753210 0112 1579999999999998888766544
No 283
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8.9e-21 Score=168.00 Aligned_cols=184 Identities=11% Similarity=0.024 Sum_probs=121.2
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc--C----CCcEEEEeecCCCC--CHHH
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D----KYSLAAVTNDIFTK--EDGE 125 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~--~----~g~i~i~~~d~~~~--~~~~ 125 (283)
+...++++.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++ | +|+|.+.+.++... ....
T Consensus 6 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 6 ITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred EEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 344555555542 35788999985 599999999999999999999999864 3 49999998877532 2234
Q ss_pred HHHhccccCCchHH-------HHHhCC-CCCCChHHHH-HHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHHh
Q 023354 126 FLMRNGALPEERIR-------AVETGG-CPHAAIREDI-SINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 126 ~~~~ig~v~q~~~~-------~i~~~g-~~~~~~~~~~-~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
+++.++|++|++.. .+.++. .......+.. ..+.+.++.+.. ....+..+.+ |+||+||++||+++
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 55679999997531 111110 0000011111 122334444432 1233455555 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+ +|.++|+| |+++.|...+ ...+ .++||+|++++.|++...+++.+.+.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 164 AVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 8 58888888 9998754211 0112 16799999999999998887766653
No 284
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2.2e-20 Score=176.98 Aligned_cols=165 Identities=15% Similarity=0.108 Sum_probs=124.4
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhccccCCchH--------
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------- 138 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~-------- 138 (283)
.+|++++|..+ |++++|+|.||||||||+|.|+|.++|+ |+|.+++......++.+- ...|..|+|+..
T Consensus 22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa 101 (500)
T COG1129 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA 101 (500)
T ss_pred eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence 58999999855 9999999999999999999999999998 999999988876665543 446888999864
Q ss_pred HHHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc---
Q 023354 139 RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI--- 207 (283)
Q Consensus 139 ~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l--- 207 (283)
+.+.++..+.. ..+.......+.|..++....++.++.+ |.||+|.++||+|+. ++.|+++| ||+.+..
T Consensus 102 eNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~ 181 (500)
T COG1129 102 ENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181 (500)
T ss_pred HHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 33445554433 1233334566677777664447777877 999999999999998 57788888 9987421
Q ss_pred ----------hhhcC----------CcccccCEEEEEcCCcccccCC
Q 023354 208 ----------PRKGG----------PGITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 208 ----------~~~~~----------~~i~~ad~ivi~K~g~i~~~g~ 234 (283)
..+.. ..++.||+|++++.|+.+...+
T Consensus 182 ~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 182 ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 11111 1148999999999999877544
No 285
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.83 E-value=1.4e-20 Score=200.59 Aligned_cols=174 Identities=13% Similarity=0.087 Sum_probs=123.1
Q ss_pred ccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEE-eecCCCCCHHHHHHh
Q 023354 54 HSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TNDIFTKEDGEFLMR 129 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~-~~d~~~~~~~~~~~~ 129 (283)
.+.+.++.+.|+... .+.+++++|..+ |++++|+||||||||||+++|+|++.|+ |+|.+. +.++...+...+++.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 578889999998654 368999999855 9999999999999999999999999998 999995 577777777778889
Q ss_pred ccccCCchH-------HHHHhCCCCCC-----------------------------------------ChH---------
Q 023354 130 NGALPEERI-------RAVETGGCPHA-----------------------------------------AIR--------- 152 (283)
Q Consensus 130 ig~v~q~~~-------~~i~~~g~~~~-----------------------------------------~~~--------- 152 (283)
+|||+|++. +.+.++..... ...
T Consensus 462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 999999874 22333321000 000
Q ss_pred --HHHHHHHHHHHHcc-------ccccCCCcccC-----CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------
Q 023354 153 --EDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------- 209 (283)
Q Consensus 153 --~~~~~~~~~l~~l~-------~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------- 209 (283)
...+.+.++++.+. +..+++..+.+ ||||+||++|||+++ +|.|+++| ||++.|...
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~ 621 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 00012233333322 23345555544 999999999999998 58888888 999865321
Q ss_pred ---h---cCCc----------ccccCEEEEEcCC
Q 023354 210 ---K---GGPG----------ITQADLLVINKTD 227 (283)
Q Consensus 210 ---~---~~~~----------i~~ad~ivi~K~g 227 (283)
. .+.+ ++.||+|++++.|
T Consensus 622 L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 622 INNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 1 1121 3789999999885
No 286
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=1.2e-20 Score=165.49 Aligned_cols=143 Identities=19% Similarity=0.145 Sum_probs=111.4
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~ 147 (283)
.++++++|..+ |++++|+|.+|||||||-++|+|+++|+ |+|.+.+.++.....
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~------------------------ 82 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSK------------------------ 82 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcch------------------------
Confidence 57899999855 9999999999999999999999999998 999999988654331
Q ss_pred CCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc-------------hhh
Q 023354 148 HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI-------------PRK 210 (283)
Q Consensus 148 ~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l-------------~~~ 210 (283)
.+..+.+.+.|+.+++.. .+++..-| ||||+||+.|||||+ +|.+++.| |++..|. +.+
T Consensus 83 ----~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~ 158 (268)
T COG4608 83 ----EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE 158 (268)
T ss_pred ----hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH
Confidence 112234455666665443 45666666 999999999999998 79888888 8887543 223
Q ss_pred cCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 211 GGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 211 ~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.+.++ .+||+|++|..|++++.|+..+++.
T Consensus 159 ~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 159 LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 22221 6799999999999999998888775
No 287
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.83 E-value=5.7e-21 Score=169.46 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=114.7
Q ss_pred ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (283)
...++...|.. ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+ ...++|+
T Consensus 6 ~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~v 72 (251)
T PRK09544 6 SLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYV 72 (251)
T ss_pred EEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEEe
Confidence 33444444532 34788899985 59999999999999999999999999987 9987653 1358888
Q ss_pred CCchHHH-------HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354 134 PEERIRA-------VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (283)
Q Consensus 134 ~q~~~~~-------i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~ 203 (283)
+|++..+ .......... ....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++| |++
T Consensus 73 ~q~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 73 PQKLYLDTTLPLTVNRFLRLRPGT---KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccccccccccChhHHHHHhccccc---cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 8875211 0110000000 012344567777666666666666 999999999999998 58888888 999
Q ss_pred CCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 204 GDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 204 g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.|... +.+.++ ..||++++++. ++...|+..+...
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 875321 112221 67999999974 6777777766554
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.83 E-value=3.2e-20 Score=163.89 Aligned_cols=176 Identities=13% Similarity=0.024 Sum_probs=116.3
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEeecCCCCCHHHHH-Hhcccc
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGAL 133 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v 133 (283)
++.+.|.. .+.+++++|.. +|++++|+|+||||||||+++|+|++ +|+ |+|.+.+.++...++...+ ..++|+
T Consensus 6 nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 83 (248)
T PRK09580 6 DLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMA 83 (248)
T ss_pred EEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEE
Confidence 34444442 35788999985 59999999999999999999999995 576 9999998887655554443 469999
Q ss_pred CCchHH--------HHHhCCCC---CC--C-hH-HH-HHHHHHHHHHcccc-ccCCCccc-C-CchHHHHHHHHHHhc-C
Q 023354 134 PEERIR--------AVETGGCP---HA--A-IR-ED-ISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 134 ~q~~~~--------~i~~~g~~---~~--~-~~-~~-~~~~~~~l~~l~~~-~~~d~~i~-e-SgGq~q~~~ia~al~-~ 193 (283)
+|++.. +..+.... .. . .. .. ...+.+.++.+... ...+..+. + |+||+||++||++++ +
T Consensus 84 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (248)
T PRK09580 84 FQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 163 (248)
T ss_pred ecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 988531 11110000 00 0 00 01 11233455555543 23444443 4 999999999999998 4
Q ss_pred CcEEEEe-CCCCCCchh------------hcCCcc-----------cc-cCEEEEEcCCcccccCChH
Q 023354 194 YIIYIID-VSGGDKIPR------------KGGPGI-----------TQ-ADLLVINKTDLASAIGADL 236 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~------------~~~~~i-----------~~-ad~ivi~K~g~i~~~g~~~ 236 (283)
|.++++| |+++.|... +.+.++ .. ||++++++.|++...|+..
T Consensus 164 p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 164 PELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 8888888 999865321 111221 33 8999999999998877665
No 289
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=167.04 Aligned_cols=185 Identities=15% Similarity=0.066 Sum_probs=123.0
Q ss_pred CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCC----CC
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIF----TK 121 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~----~~ 121 (283)
+.+...+..+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++| + |+|.+.+.++. ..
T Consensus 15 ~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 15 QKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred ceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 45666777777653 35889999985 5999999999999999999999999874 4 89998876653 12
Q ss_pred CHHHHHHhccccCCchH-------HHHHhCCC-CCCChHHHH-HHHHHHHHHccc----cccCCCcccC-CchHHHHHHH
Q 023354 122 EDGEFLMRNGALPEERI-------RAVETGGC-PHAAIREDI-SINLGPLEELSN----LFKADLLLCE-SGGDNLAANF 187 (283)
Q Consensus 122 ~~~~~~~~ig~v~q~~~-------~~i~~~g~-~~~~~~~~~-~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~i 187 (283)
....+++.++|++|++. +.+.++.. ......... ..+.+.++.+.. ....+..+.+ |+||+||+.|
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 23455677999999753 11111100 000001111 122334444432 1233444555 9999999999
Q ss_pred HHHhc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 188 SRELA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 188 a~al~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
|++++ +|.++++| |+++.|.... ...+ ..+||++++++.|++.+.|+..+.+
T Consensus 173 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 173 ARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99998 58888888 9998753211 0111 1579999999999999888776554
No 290
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.83 E-value=2.5e-20 Score=157.49 Aligned_cols=118 Identities=25% Similarity=0.316 Sum_probs=87.8
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HHHHHhccccCCchHHHHHhCCCC
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGCP 147 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~i~~~g~~ 147 (283)
.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....+ ..+++.++|++|++... ...+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~---~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKRE---GLVL 91 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccC---cccC
Confidence 678888884 59999999999999999999999999987 999999988776553 33456799999974200 0112
Q ss_pred CCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
..+..+.+.... . -|+||+||+++|++++ +|.++++| |+++.|.
T Consensus 92 ~~t~~e~l~~~~----~------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~ 137 (182)
T cd03215 92 DLSVAENIALSS----L------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDV 137 (182)
T ss_pred CCcHHHHHHHHh----h------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCH
Confidence 223333321100 0 3999999999999998 58888887 9998764
No 291
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2e-20 Score=156.75 Aligned_cols=111 Identities=25% Similarity=0.348 Sum_probs=87.0
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~ 147 (283)
+.+++++|.. +|++++|+|+||||||||+++|+|+++|. |+|.+.+.++.... ..+++.++|++|++.. .+
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~------~~ 86 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPSL------YE 86 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCCcc------cc
Confidence 4788999984 59999999999999999999999999887 99999888775443 4556789999997421 11
Q ss_pred CCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
..+..+.+. -|+||+||+.+|++++ +|.++++| |+++.|.
T Consensus 87 ~~tv~~~~~--------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 128 (173)
T cd03230 87 NLTVRENLK--------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128 (173)
T ss_pred CCcHHHHhh--------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 123222221 3999999999999998 58888887 9998764
No 292
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.83 E-value=2.3e-20 Score=159.99 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=105.4
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEeecCCCCCHHHH-HHhccccCCchHHHHHhC
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERIRAVETG 144 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~~~i~~~ 144 (283)
..+++++|.. +|++++|+|+||||||||+++|+|+. .|+ |+|.+++.++........ +..++|++|++..+
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~---- 89 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEI---- 89 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhc----
Confidence 5788999985 59999999999999999999999994 676 999999998876655444 34599999985321
Q ss_pred CCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------------
Q 023354 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------------ 209 (283)
Q Consensus 145 g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------------ 209 (283)
+.....+ .+ +....+ |+||+||+.+|++++ +|.++++| |+++.|...
T Consensus 90 --~~~~~~~-------~l---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~ 151 (200)
T cd03217 90 --PGVKNAD-------FL---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR 151 (200)
T ss_pred --cCccHHH-------HH---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 1111111 11 111122 999999999999999 58888887 999865321
Q ss_pred hcCCc----------c-c-ccCEEEEEcCCcccccCChHHH
Q 023354 210 KGGPG----------I-T-QADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 210 ~~~~~----------i-~-~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+.+.+ + . +||++++++.|++.+.+ +.+.
T Consensus 152 ~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~ 191 (200)
T cd03217 152 EEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL 191 (200)
T ss_pred HCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHH
Confidence 11222 1 3 69999999999998877 4343
No 293
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.83 E-value=2e-20 Score=163.13 Aligned_cols=159 Identities=18% Similarity=0.048 Sum_probs=105.6
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-HHHHhCC
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETGG 145 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~i~~~g 145 (283)
.+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.+.... ....++.+.... +.+..+.
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~~~~~~tv~enl~~~~ 109 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGGFNPELTGRENIYLNG 109 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccccCCCCCcHHHHHHHHH
Confidence 45889999985 59999999999999999999999999987 9999887764311 112333333222 1222111
Q ss_pred CCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------------
Q 023354 146 CPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------------ 209 (283)
Q Consensus 146 ~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------------ 209 (283)
... ....+......+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|...
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~ 189 (224)
T cd03220 110 RLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL 189 (224)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 000 11111122344556666666666777777 999999999999998 58888887 999876421
Q ss_pred hcCCcc-----------cccCEEEEEcCCccccc
Q 023354 210 KGGPGI-----------TQADLLVINKTDLASAI 232 (283)
Q Consensus 210 ~~~~~i-----------~~ad~ivi~K~g~i~~~ 232 (283)
+.+.++ .+||++++++.|++.+.
T Consensus 190 ~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 190 KQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223 (224)
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 111121 56888888888887653
No 294
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.83 E-value=9.1e-21 Score=157.49 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=97.8
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhccccCC
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPE 135 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q 135 (283)
++...|.. .+.+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..+ +++.++|++|
T Consensus 5 ~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q 82 (163)
T cd03216 5 GITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ 82 (163)
T ss_pred EEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe
Confidence 33444533 25788889985 49999999999999999999999999987 99999988876554433 3456888776
Q ss_pred chHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh---
Q 023354 136 ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK--- 210 (283)
Q Consensus 136 ~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~--- 210 (283)
-|+||+||+++|++++ +|.++++| |+++.|....
T Consensus 83 -----------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l 121 (163)
T cd03216 83 -----------------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERL 121 (163)
T ss_pred -----------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH
Confidence 2999999999999998 58888887 9998763211
Q ss_pred ---------cCCcc-----------cccCEEEEEcCCcccc
Q 023354 211 ---------GGPGI-----------TQADLLVINKTDLASA 231 (283)
Q Consensus 211 ---------~~~~i-----------~~ad~ivi~K~g~i~~ 231 (283)
.+.++ ..||++++++.|++.+
T Consensus 122 ~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 122 FKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 11111 4678888888777643
No 295
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.8e-20 Score=164.60 Aligned_cols=171 Identities=15% Similarity=0.086 Sum_probs=116.2
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHHHHHHhccccCCchHH
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERIR 139 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~~ 139 (283)
...+.+++|.. +|++++|+|+||||||||+++|+|++. |+ |+|.+++.++... ....+++.++|+||++..
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 35788999985 599999999999999999999999864 25 9999999877532 234566789999998531
Q ss_pred -------HHHhCCCCC-CChHHHH-HHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354 140 -------AVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (283)
Q Consensus 140 -------~i~~~g~~~-~~~~~~~-~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~ 203 (283)
.+..+.... ....+.. ..+.+.++.++.. ...+..+.+ |+||+||++||++++ +|.++++| |++
T Consensus 96 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~ 175 (250)
T PRK14266 96 FPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCS 175 (250)
T ss_pred CcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 111111000 0111111 2334455554431 223555555 999999999999998 58888887 999
Q ss_pred CCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 204 GDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 204 g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+.|.... .+.+ ...|+++++++.|.+.+.|+..+.+
T Consensus 176 gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 176 ALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred cCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 8764211 1112 1678999999999998888776654
No 296
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.83 E-value=4.3e-20 Score=158.41 Aligned_cols=133 Identities=14% Similarity=0.039 Sum_probs=98.8
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~ 139 (283)
..+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|++. +
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e 92 (201)
T cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-RDSIARGLLYLGHAPGIKTTLSVLE 92 (201)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-cHHhhhheEEeccccccCCCcCHHH
Confidence 4688899984 59999999999999999999999999987 9999988876543 2356678999998642 1
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
.+.+.. ... ....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|..
T Consensus 93 ~l~~~~-~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 93 NLRFWH-ADH----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred HHHhhc-ccc----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 111111 100 112344566777666555666666 999999999999999 58888887 99998754
No 297
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=3.3e-20 Score=158.95 Aligned_cols=134 Identities=12% Similarity=-0.009 Sum_probs=98.8
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~ 139 (283)
..+.+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++|++. .
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~ 93 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSGINPYLTLRE 93 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccccCcCCCHHH
Confidence 5788999985 59999999999999999999999999987 999998877653 23455678999998642 1
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
.+.++.... . ....+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|..
T Consensus 94 ~~~~~~~~~-~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~ 161 (200)
T PRK13540 94 NCLYDIHFS-P---GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL 161 (200)
T ss_pred HHHHHHhcC-c---chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 111110000 0 112344566666665555666666 999999999999998 58888888 99997754
No 298
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.3e-20 Score=176.97 Aligned_cols=177 Identities=16% Similarity=0.136 Sum_probs=121.9
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig 131 (283)
+...+.+..| ...+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+... +++.++
T Consensus 251 i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 251 LEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 4445555442 247888898855 9999999999999999999999999987 99999888876544433 345699
Q ss_pred ccCCchHH--------H--------HHhCCCCCC--ChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHh
Q 023354 132 ALPEERIR--------A--------VETGGCPHA--AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 132 ~v~q~~~~--------~--------i~~~g~~~~--~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al 191 (283)
|++|++.. . +........ ........+.+.++.+... ...+..+.+ ||||+||+.||+++
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 406 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL 406 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH
Confidence 99987420 0 000000000 1111122445567777664 346777777 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh------------cCCc-----------ccccCEEEEEcCCcccccCCh
Q 023354 192 A-DYIIYIID-VSGGDKIPRK------------GGPG-----------ITQADLLVINKTDLASAIGAD 235 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~~g~~ 235 (283)
+ +|.|+|+| ||++.|.... .+.+ ..+||++++++.|++...++.
T Consensus 407 ~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 8 48888888 9999764211 1222 168999999999998865544
No 299
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.83 E-value=6.5e-20 Score=162.40 Aligned_cols=180 Identities=14% Similarity=0.017 Sum_probs=120.3
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhc--ccCC-CcEEEEeecCCCCCHHHHHH-h
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFLM-R 129 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~--~~~~-g~i~i~~~d~~~~~~~~~~~-~ 129 (283)
....++.+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+ ++|+ |+|.+.+.++.........+ .
T Consensus 8 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 8 LEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred EEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 444455555542 35788999984 5999999999999999999999997 4676 99999988876554433333 4
Q ss_pred ccccCCchH--------HHHHhCCCC--------CCChHHHHHHHHHHHHHcccc-ccCCCccc--CCchHHHHHHHHHH
Q 023354 130 NGALPEERI--------RAVETGGCP--------HAAIREDISINLGPLEELSNL-FKADLLLC--ESGGDNLAANFSRE 190 (283)
Q Consensus 130 ig~v~q~~~--------~~i~~~g~~--------~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~--eSgGq~q~~~ia~a 190 (283)
+++++|++. ..+...... .....+....+.+.++.++.. ...+..+. -|+||+||+.+|++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 165 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQM 165 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHH
Confidence 778888742 111111000 000011112344567776654 24455554 29999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchh------------hcCCcc-----------cc-cCEEEEEcCCcccccCChH
Q 023354 191 LA-DYIIYIID-VSGGDKIPR------------KGGPGI-----------TQ-ADLLVINKTDLASAIGADL 236 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~------------~~~~~i-----------~~-ad~ivi~K~g~i~~~g~~~ 236 (283)
++ +|.|+++| |+++.|... +.+.++ .. ||++++++.|++.+.|++.
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 166 ALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 98 58888888 999865321 111221 34 8999999999999887665
No 300
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.83 E-value=6.3e-21 Score=153.19 Aligned_cols=126 Identities=23% Similarity=0.251 Sum_probs=94.7
Q ss_pred ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC
Q 023354 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149 (283)
Q Consensus 72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~ 149 (283)
|++++|. .+|++++|+|+||||||||+++|+|.++|. |.|.+.+.++.......+++.++|++|+...+.. .
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~ 74 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPG------L 74 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTT------S
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccc------c
Confidence 3566776 459999999999999999999999999987 9999999888876667788899999998432211 1
Q ss_pred ChHH--HHHHHHHHHHHccccccCCCcc----cC-CchHHHHHHHHHHhcC-CcEEEEe-CCC
Q 023354 150 AIRE--DISINLGPLEELSNLFKADLLL----CE-SGGDNLAANFSRELAD-YIIYIID-VSG 203 (283)
Q Consensus 150 ~~~~--~~~~~~~~l~~l~~~~~~d~~i----~e-SgGq~q~~~ia~al~~-~~l~llD-pt~ 203 (283)
++.+ ....+.+.++.+......+..+ .+ |+||+||+.||++++. |.++++| |++
T Consensus 75 tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 75 TVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp BHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1111 1124455666666655555555 55 9999999999999984 7787777 874
No 301
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=1.6e-20 Score=153.21 Aligned_cols=146 Identities=19% Similarity=0.203 Sum_probs=111.4
Q ss_pred CCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH
Q 023354 63 GYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA 140 (283)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~ 140 (283)
+|.....+.++.++|.-. |++++|+||+|||||||+|+++.++.|+ |.+.+-+.++.+..+..+|..++|+.|.+..+
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 455566678899999854 9999999999999999999999999998 99999999999999999999999999887422
Q ss_pred HHh----CCCCCC--ChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 141 VET----GGCPHA--AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 141 i~~----~g~~~~--~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
-++ --+|+. ..+.+.......|..+.+.. .++..+.+ |||++||++++|.|. -|.|+|+| +|+.+|..
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~ 167 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES 167 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChh
Confidence 111 111211 01112234456677776654 35666666 999999999999997 48888888 88876643
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.2e-20 Score=155.25 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=87.8
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~ 147 (283)
..+.+++|.. +|++++|+||||||||||+++|+|+++|. |++.+.+.++.......+++.++|++|++.. + +
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~---~---~ 89 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL---F---S 89 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchh---c---c
Confidence 5788889985 59999999999999999999999999987 9999988877655555667789999997521 1 1
Q ss_pred CCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
.+..++ + -|+||+||+.+|++++ +|.++++| |+++.|..
T Consensus 90 -~t~~e~-------l--------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~ 130 (171)
T cd03228 90 -GTIREN-------I--------------LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130 (171)
T ss_pred -chHHHH-------h--------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 111111 1 3999999999999998 58888887 99997643
No 303
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.82 E-value=1.3e-20 Score=161.21 Aligned_cols=135 Identities=16% Similarity=0.072 Sum_probs=98.7
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------- 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------- 139 (283)
..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|....
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 92 (198)
T TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLPGLKPELSALE 92 (198)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCcccccCCcHHH
Confidence 4788899985 59999999999999999999999999987 99999888765443 3455679999986421
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
.+.+....... ....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|..
T Consensus 93 ~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 161 (198)
T TIGR01189 93 NLHFWAAIHGG---AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKA 161 (198)
T ss_pred HHHHHHHHcCC---cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 11111000000 011344566776666556666666 999999999999998 58888888 99998754
No 304
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=9.8e-21 Score=159.39 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=88.0
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC--HHHHHHhccccCCchHHHHHhC
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIRAVETG 144 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~~~i~~~ 144 (283)
.+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+ ...+++.++|++|++..
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~----- 87 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFAL----- 87 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCcc-----
Confidence 35788899984 59999999999999999999999999987 99999998876544 44566789999987521
Q ss_pred CCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 145 g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
.+..+..+.+. . . -|+||+||+.+|++++ +|.++++| |+++.|.
T Consensus 88 -~~~~t~~~~l~-------~---~--------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~ 133 (178)
T cd03229 88 -FPHLTVLENIA-------L---G--------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133 (178)
T ss_pred -CCCCCHHHhee-------e---c--------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 11112222110 0 0 3999999999999998 48888887 9999764
No 305
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.1e-20 Score=168.44 Aligned_cols=183 Identities=15% Similarity=0.066 Sum_probs=121.6
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHHH
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGE 125 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~~ 125 (283)
+...++.+.|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++... ....
T Consensus 46 l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 46 LSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred EEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 455566655543 35789999985 599999999999999999999999985 45 9999998877532 2345
Q ss_pred HHHhccccCCchHH-------HHHhCCCCC-------------CC-hHHHHHHHHHHHHHcccc----ccCCCcccC-Cc
Q 023354 126 FLMRNGALPEERIR-------AVETGGCPH-------------AA-IREDISINLGPLEELSNL----FKADLLLCE-SG 179 (283)
Q Consensus 126 ~~~~ig~v~q~~~~-------~i~~~g~~~-------------~~-~~~~~~~~~~~l~~l~~~----~~~d~~i~e-Sg 179 (283)
+++.++|++|++.. .+.++.... .. .......+.+.++.+... ...+..+.+ |+
T Consensus 124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 203 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG 203 (305)
T ss_pred HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence 66789999998531 121111000 00 001112334455555432 223444555 99
Q ss_pred hHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh---------c--CCc-----------ccccCEE-EEEcCCcccccCC
Q 023354 180 GDNLAANFSRELA-DYIIYIID-VSGGDKIPRK---------G--GPG-----------ITQADLL-VINKTDLASAIGA 234 (283)
Q Consensus 180 Gq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~---------~--~~~-----------i~~ad~i-vi~K~g~i~~~g~ 234 (283)
||+||+.||++|+ +|.|+|+| |+++.|.... . ..+ ..+||++ ++++.|++.+.|+
T Consensus 204 Gq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~ 283 (305)
T PRK14264 204 GQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDD 283 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCC
Confidence 9999999999999 48888888 9999764211 0 111 1579986 5779999998887
Q ss_pred hHHHH
Q 023354 235 DLAVM 239 (283)
Q Consensus 235 ~~e~~ 239 (283)
..+.+
T Consensus 284 ~~~~~ 288 (305)
T PRK14264 284 TDKIF 288 (305)
T ss_pred HHHHH
Confidence 66554
No 306
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.82 E-value=7.9e-20 Score=181.16 Aligned_cols=170 Identities=18% Similarity=0.122 Sum_probs=125.2
Q ss_pred CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC----CCcEEEEeecCCCCCHHHHHHhccccCCchH----
Q 023354 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (283)
Q Consensus 68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---- 138 (283)
.+..++++++..+ |+.++|+|||||||||||++|+|..++ +|+|.+++.++. ...+++.+||++|++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 3467899999855 999999999999999999999998876 388998887653 3456778999999863
Q ss_pred ----HHHHhCCC---CC-CChHHHHHHHHHHHHHccccccCCCccc------C-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354 139 ----RAVETGGC---PH-AAIREDISINLGPLEELSNLFKADLLLC------E-SGGDNLAANFSRELA-DYIIYIID-V 201 (283)
Q Consensus 139 ----~~i~~~g~---~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~------e-SgGq~q~~~ia~al~-~~~l~llD-p 201 (283)
+.+.++.. +. ....+....+.+.++.+++.+..+..+. . ||||+||+.||++++ +|.++++| |
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 22222211 11 1112333356678888887777777775 2 999999999999998 57777777 9
Q ss_pred CCCCCchh------------hcCCc------------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 202 SGGDKIPR------------KGGPG------------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 202 t~g~~l~~------------~~~~~------------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++|.|... +.+.+ +..+|++++++.|++++.|+..+...
T Consensus 194 tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 99965321 11111 36799999999999999998876643
No 307
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=4.3e-20 Score=158.73 Aligned_cols=136 Identities=18% Similarity=0.090 Sum_probs=99.5
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~ 139 (283)
..+.+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...++.++|++|.+. +
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~tv~e 93 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYLGHQPGIKTELTALE 93 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEeCCccccCcCCcHHH
Confidence 4788999985 59999999999999999999999999988 99999888775432 345567899988642 1
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
.+.+..... .. .....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|..
T Consensus 94 ~l~~~~~~~-~~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 163 (204)
T PRK13538 94 NLRFYQRLH-GP-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ 163 (204)
T ss_pred HHHHHHHhc-Cc-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 111111000 00 1122345567777766556666666 999999999999998 58888888 99997754
No 308
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.82 E-value=4.5e-20 Score=157.54 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=106.3
Q ss_pred ccccCCCCCCCC----CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEeecCCCCCHHHHH
Q 023354 56 HEPIYSPGYFSR----RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL 127 (283)
Q Consensus 56 ~~~~~~~~~~~~----~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~~d~~~~~~~~~~ 127 (283)
...++++.|... ..+.+++++|.. +|++++|+||||||||||+++|+|++ +|. |+|.+++.++.. ..++
T Consensus 5 ~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~ 81 (194)
T cd03213 5 SFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFR 81 (194)
T ss_pred EEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hhhh
Confidence 344555555442 246889999984 59999999999999999999999999 887 999999887653 2456
Q ss_pred HhccccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354 128 MRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (283)
Q Consensus 128 ~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~ 205 (283)
+.++|++|++. -++..++.+.+... ..+. .-|+||+||+.+|++++ +|.++++| |+++.
T Consensus 82 ~~i~~~~q~~~------~~~~~t~~~~i~~~----~~~~---------~LS~G~~qrv~laral~~~p~illlDEP~~~L 142 (194)
T cd03213 82 KIIGYVPQDDI------LHPTLTVRETLMFA----AKLR---------GLSGGERKRVSIALELVSNPSLLFLDEPTSGL 142 (194)
T ss_pred heEEEccCccc------CCCCCcHHHHHHHH----HHhc---------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 77999998742 12222333333210 0010 22999999999999998 57788777 99986
Q ss_pred Cchhh------------cCCc------------ccccCEEEEEcCCcccc
Q 023354 206 KIPRK------------GGPG------------ITQADLLVINKTDLASA 231 (283)
Q Consensus 206 ~l~~~------------~~~~------------i~~ad~ivi~K~g~i~~ 231 (283)
|.... .+.+ ...||++++++.|++.+
T Consensus 143 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 53211 0111 13478888888887654
No 309
>PLN03211 ABC transporter G-25; Provisional
Probab=99.81 E-value=6.1e-20 Score=182.66 Aligned_cols=168 Identities=17% Similarity=0.218 Sum_probs=120.0
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC---CCcEEEEeecCCCCCHHHHHHhccccCCchH------
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------ 138 (283)
...++++++..+ |++++|+|||||||||||++|+|.++| +|+|.+++.++. .+.++++|||+|+..
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 457899999854 999999999999999999999999876 499999887763 234467999999853
Q ss_pred --HHHHhCC---CCC-CChHHHHHHHHHHHHHccccccCCCcc-----cC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 139 --RAVETGG---CPH-AAIREDISINLGPLEELSNLFKADLLL-----CE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 139 --~~i~~~g---~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i-----~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
+.+.+.. .+. ....+....+.+.++.+++.+..+..+ .+ ||||+||+.||++++ +|.|+++| |++|
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 2222211 111 111222334566777777766555433 33 999999999999998 58888887 9999
Q ss_pred CCchh------------hcCCc------------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 205 DKIPR------------KGGPG------------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 205 ~~l~~------------~~~~~------------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.|... +.+.+ .+.+|++++++.|++.+.|+..+...
T Consensus 237 LD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 75321 11111 25689999999999999998766543
No 310
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=2.5e-19 Score=145.54 Aligned_cols=168 Identities=16% Similarity=0.131 Sum_probs=119.9
Q ss_pred CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC--CCC----HHHHHHhccccCCchH-
Q 023354 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKE----DGEFLMRNGALPEERI- 138 (283)
Q Consensus 68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~--~~~----~~~~~~~ig~v~q~~~- 138 (283)
...++-+++|..+ |+.+.++||+|||||||++.|.=+.-|. |+..+.++.+. +.. ..++|+++|+|||.-.
T Consensus 14 ~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~l 93 (242)
T COG4161 14 AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL 93 (242)
T ss_pred cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhcc
Confidence 3346778888754 9999999999999999999998877776 98888777653 222 2467889999999742
Q ss_pred ----HHHH-hCCCCCC----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 139 ----RAVE-TGGCPHA----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 139 ----~~i~-~~g~~~~----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
.+++ +--.|+. ...+......+.|..+.+....|+...- ||||+||++|||+|+ .|.++++| ||...|
T Consensus 94 wphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaald 173 (242)
T COG4161 94 WPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred CchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccC
Confidence 1111 1111111 1223344667788888888888887766 999999999999998 58888888 888754
Q ss_pred ch---------hh----cCCc----------ccccCEEEEEcCCcccccCCh
Q 023354 207 IP---------RK----GGPG----------ITQADLLVINKTDLASAIGAD 235 (283)
Q Consensus 207 l~---------~~----~~~~----------i~~ad~ivi~K~g~i~~~g~~ 235 (283)
.. ++ ...+ -..|.+|+.+..|.+++.|+.
T Consensus 174 peitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 174 PEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecch
Confidence 21 11 1111 156889999999999998765
No 311
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.81 E-value=1.5e-19 Score=168.79 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=123.2
Q ss_pred CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhccccCCchH------
Q 023354 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------ 138 (283)
Q Consensus 68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~------ 138 (283)
.-.+.++++|..+ |++.+|+|.||||||||+++|.|+++|+ |+|.+++..+.-.++.+ ++..||+|+|.+.
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lT 95 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT 95 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccc
Confidence 3346788888855 9999999999999999999999999998 99999999988666654 4557999999864
Q ss_pred --HHHHhCCCCC----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-
Q 023354 139 --RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP- 208 (283)
Q Consensus 139 --~~i~~~g~~~----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~- 208 (283)
+.+.++..+. ...+....++.+..+++++.-.++..+.+ |.|++||+.|.++|. ++.++++| ||+-+..+
T Consensus 96 V~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E 175 (501)
T COG3845 96 VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175 (501)
T ss_pred hhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 3344443321 12233333555666777777778888888 999999999999998 48888888 88753211
Q ss_pred -----------hhcCCc-----------ccccCEEEEEcCCcccc
Q 023354 209 -----------RKGGPG-----------ITQADLLVINKTDLASA 231 (283)
Q Consensus 209 -----------~~~~~~-----------i~~ad~ivi~K~g~i~~ 231 (283)
.+.+.+ .+.||++.+++.|+++.
T Consensus 176 ~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 176 ADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 111222 37899999999998865
No 312
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.81 E-value=1.7e-19 Score=174.33 Aligned_cols=176 Identities=16% Similarity=0.034 Sum_probs=120.2
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC--CCcEEEEeecCCC-CCHHHHHHh
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIFT-KEDGEFLMR 129 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~g~i~i~~~d~~~-~~~~~~~~~ 129 (283)
.+...+....|.. ...+++++|.. +|++++|+||||||||||+++|+|++++ +|+|.+.+.++.. ......++.
T Consensus 260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 3455555555532 34788999985 5999999999999999999999998775 4999998876532 122345678
Q ss_pred ccccCCchHHH---------HHhCC-CC----C-CChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc
Q 023354 130 NGALPEERIRA---------VETGG-CP----H-AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA 192 (283)
Q Consensus 130 ig~v~q~~~~~---------i~~~g-~~----~-~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~ 192 (283)
+||++|++..+ +...+ .. . .........+.+.++.++... ..+..+.+ |+||+||++||++++
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence 99999874211 11111 10 0 001112234556788887765 66777777 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCch-------------hhcCCc----------c-c-ccCEEEEEcCCcccc
Q 023354 193 -DYIIYIID-VSGGDKIP-------------RKGGPG----------I-T-QADLLVINKTDLASA 231 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~-------------~~~~~~----------i-~-~ad~ivi~K~g~i~~ 231 (283)
+|.++++| |+++.|.. .+...+ + . +||++++++.|++.+
T Consensus 418 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 418 KHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR 483 (490)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence 58888888 99997532 111121 1 3 478899998888765
No 313
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.81 E-value=1e-19 Score=158.42 Aligned_cols=139 Identities=18% Similarity=0.170 Sum_probs=96.6
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee----cCCCCCHHH---H-HHhccccCCchHH
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGE---F-LMRNGALPEERIR 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~----d~~~~~~~~---~-~~~ig~v~q~~~~ 139 (283)
..+.+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+. ++...+... + ++.++|++|++..
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 5788999985 59999999999999999999999999987 99988742 443333332 2 3469999998631
Q ss_pred --------HHHhCCC-CCCChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 140 --------AVETGGC-PHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 140 --------~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
.+..... ...........+.+.++.++.... .+..+.+ |+||+||+.+|++++ +|.++++| |+++.|
T Consensus 102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 181 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181 (224)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 1111100 011111112244556777766543 3556666 999999999999998 58888888 999977
Q ss_pred ch
Q 023354 207 IP 208 (283)
Q Consensus 207 l~ 208 (283)
..
T Consensus 182 ~~ 183 (224)
T TIGR02324 182 AA 183 (224)
T ss_pred HH
Confidence 54
No 314
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.2e-19 Score=151.55 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=102.9
Q ss_pred CCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH---
Q 023354 64 YFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--- 138 (283)
Q Consensus 64 ~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--- 138 (283)
|.....+++.++++... |+.++++||+|||||||||.++|+..|. |+|.+++..+.... ..-|+|||+.-
T Consensus 13 y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aergvVFQ~~~LlP 87 (259)
T COG4525 13 YEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGVVFQNEALLP 87 (259)
T ss_pred cCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----ccceeEeccCccch
Confidence 44455678899999865 9999999999999999999999999998 99999998776432 13488888763
Q ss_pred -----HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354 139 -----RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (283)
Q Consensus 139 -----~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~ 205 (283)
..+.+|..... ...+..+.+.+.|..+++...-+..+++ ||||+||+.|||||+ +|.++++| |....
T Consensus 88 Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl 163 (259)
T COG4525 88 WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL 163 (259)
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhH
Confidence 23333322111 1123334556677777777777888888 999999999999998 78888888 76653
No 315
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.2e-19 Score=154.54 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=103.2
Q ss_pred cccCCCCCCCC--CCCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhccc--CC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 57 EPIYSPGYFSR--RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 57 ~~~~~~~~~~~--~~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~--~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+.+.++.|... ..+.+++++|. .+|++++|+||||||||||+++|+|++. |+ |++.+.+.++. ..+++.+
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i 81 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRST 81 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhce
Confidence 34445555432 23578899998 5599999999999999999999999863 55 99998887764 3456679
Q ss_pred cccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 131 GALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 131 g~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
+|++|++. -++..++.+.+.... .+. .-|+||+||+.+|++++ +|.++++| |+++.|..
T Consensus 82 ~~~~q~~~------~~~~~tv~~~l~~~~-~~~------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~ 142 (192)
T cd03232 82 GYVEQQDV------HSPNLTVREALRFSA-LLR------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142 (192)
T ss_pred EEecccCc------cccCCcHHHHHHHHH-HHh------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHH
Confidence 99998642 112223333332100 010 22999999999999998 48888877 99986532
Q ss_pred hh------------cCCc------------ccccCEEEEEcC-Ccccc
Q 023354 209 RK------------GGPG------------ITQADLLVINKT-DLASA 231 (283)
Q Consensus 209 ~~------------~~~~------------i~~ad~ivi~K~-g~i~~ 231 (283)
.+ .+.+ ...||++++++. |++.+
T Consensus 143 ~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 11 0111 145788888877 77665
No 316
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=1.3e-19 Score=156.23 Aligned_cols=143 Identities=17% Similarity=0.085 Sum_probs=99.9
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
.++...|.. ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. . .+++.++|++|
T Consensus 6 ~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~~~~ 80 (207)
T PRK13539 6 EDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHYLGH 80 (207)
T ss_pred EeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEEecC
Confidence 334444432 34788999984 59999999999999999999999999887 999998876532 1 25667899987
Q ss_pred chH--------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 136 ERI--------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 136 ~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
... +.+.+....... ....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGG---EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCC---cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 532 111110000000 012245567777665555666666 999999999999998 58888887 9999
Q ss_pred CCch
Q 023354 205 DKIP 208 (283)
Q Consensus 205 ~~l~ 208 (283)
.|..
T Consensus 158 LD~~ 161 (207)
T PRK13539 158 LDAA 161 (207)
T ss_pred CCHH
Confidence 7754
No 317
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=1.5e-19 Score=159.96 Aligned_cols=113 Identities=20% Similarity=0.164 Sum_probs=80.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHhCCCCCCC
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAA 150 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~~g~~~~~ 150 (283)
+|++++|+||||||||||+++|+|+++|+ |+|.+.+. .++|++|+.. +.+.........
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 91 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADYEGTVRDLLSSITKDFYT 91 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCCCCCHHHHHHHHhhhccc
Confidence 59999999999999999999999999987 99887653 4677776532 111110000000
Q ss_pred hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 151 IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
......+.++.+......+..+.+ |+||+||++||++|+ +|.++++| |+++.|.
T Consensus 92 ---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 92 ---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148 (246)
T ss_pred ---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 001123456666666566666666 999999999999998 48888888 9998764
No 318
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=152.61 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=117.0
Q ss_pred CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhC
Q 023354 67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG 144 (283)
Q Consensus 67 ~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~ 144 (283)
..+++++..++... |++|.|+|.||||||||+|.|+|.+.|+ |+|.+++.++...+..++...++-|+|+|. .+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~----~g 92 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL----AG 92 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh----hC
Confidence 34578899999865 9999999999999999999999999998 999999999999888888888899999873 23
Q ss_pred CCCCCChHHHH---------------------HHHHHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEE
Q 023354 145 GCPHAAIREDI---------------------SINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYII 199 (283)
Q Consensus 145 g~~~~~~~~~~---------------------~~~~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~ll 199 (283)
-|+..++.+++ ....+.+..+ +.....+..+.- ||||+|.+.++.+.+. |.|+++
T Consensus 93 t~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLL 172 (263)
T COG1101 93 TAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLL 172 (263)
T ss_pred CcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence 33333332222 1122233333 223344444444 9999999999999885 888888
Q ss_pred e-CCCCCCch-------------hhcCC-----------cccccCEEEEEcCCccccc
Q 023354 200 D-VSGGDKIP-------------RKGGP-----------GITQADLLVINKTDLASAI 232 (283)
Q Consensus 200 D-pt~g~~l~-------------~~~~~-----------~i~~ad~ivi~K~g~i~~~ 232 (283)
| -|...|.. .+.+. .+.|-+|+|+++.|+|+.+
T Consensus 173 DEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 173 DEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred cchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 8 44444321 11111 1378899999999999763
No 319
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.80 E-value=3.2e-19 Score=159.33 Aligned_cols=168 Identities=13% Similarity=0.006 Sum_probs=108.0
Q ss_pred CCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-HHHHh
Q 023354 67 RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVET 143 (283)
Q Consensus 67 ~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~i~~ 143 (283)
...+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.... . ....++.++... +.+.+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~-~-----~~~~~~~~~~tv~enl~~ 108 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSV-I-----AISAGLSGQLTGIENIEF 108 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeE-E-----ecccCCCCCCcHHHHHHH
Confidence 3345788899985 59999999999999999999999999987 99987764110 0 001122222111 11211
Q ss_pred CC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----------
Q 023354 144 GG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------- 209 (283)
Q Consensus 144 ~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------- 209 (283)
+. .......+....+...++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~ 188 (264)
T PRK13546 109 KMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE 188 (264)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 10 00111111112233345555555555666666 999999999999998 58888888 999876421
Q ss_pred --hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 210 --KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 210 --~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.+.++ ..||++++++.|.+...|+..+.+.
T Consensus 189 ~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 189 FKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 112221 5699999999999998887665544
No 320
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.80 E-value=1.2e-19 Score=180.86 Aligned_cols=185 Identities=15% Similarity=0.095 Sum_probs=132.1
Q ss_pred cccccCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----
Q 023354 55 SHEPIYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF---- 126 (283)
Q Consensus 55 ~~~~~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~---- 126 (283)
..+.+.+..|.... ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |++.+++.++......++
T Consensus 5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 84 (648)
T PRK10535 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLR 84 (648)
T ss_pred EEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHH
Confidence 34455555565332 35788999984 59999999999999999999999999987 999999988877655443
Q ss_pred HHhccccCCchHH--------HHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 127 LMRNGALPEERIR--------AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 127 ~~~ig~v~q~~~~--------~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
++.++|++|++.. .+.+.... .....+....+.+.++.++.....+..+.+ |+||+||+.+||+++ +|.
T Consensus 85 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~ 164 (648)
T PRK10535 85 REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ 164 (648)
T ss_pred hccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 4579999997631 11111100 011122233456677777776666777777 999999999999998 588
Q ss_pred EEEEe-CCCCCCchh------------hcCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 196 IYIID-VSGGDKIPR------------KGGPG----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 196 l~llD-pt~g~~l~~------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
++++| |+++.|... +.+.+ +..||++++++.|++.+.|+..+..
T Consensus 165 lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 165 VILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 88888 999865321 11111 2579999999999999988776543
No 321
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=2e-19 Score=159.81 Aligned_cols=145 Identities=17% Similarity=0.092 Sum_probs=94.3
Q ss_pred CCCCCCCCCCCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEE-----------EEeecCCCCCHHHHH
Q 023354 60 YSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFL 127 (283)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~-----------i~~~d~~~~~~~~~~ 127 (283)
+.+.|. ....++.++++..+|++++|+|||||||||||++|+|+++|+ |+|. +.+.++.... .+.+
T Consensus 6 ~~~~y~-~~~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~-~~~~ 83 (255)
T cd03236 6 PVHRYG-PNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF-TKLL 83 (255)
T ss_pred cceeec-CcchhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhh-HHhh
Confidence 344453 223467777776789999999999999999999999999997 9985 4455543321 1222
Q ss_pred H---hccccCCchHHH----HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354 128 M---RNGALPEERIRA----VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (283)
Q Consensus 128 ~---~ig~v~q~~~~~----i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l 198 (283)
+ .+++++|....+ ...-... ...........+.++.++.....+..+.+ |+||+||+.+|++++ +|.+++
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 162 (255)
T cd03236 84 EGDVKVIVKPQYVDLIPKAVKGKVGEL-LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYF 162 (255)
T ss_pred hcccceeeecchhccCchHHHHHHHHH-hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 1 356666643211 0000000 01111223445677777666555666666 999999999999998 588888
Q ss_pred Ee-CCCCCCc
Q 023354 199 ID-VSGGDKI 207 (283)
Q Consensus 199 lD-pt~g~~l 207 (283)
+| |+++.|.
T Consensus 163 lDEPts~LD~ 172 (255)
T cd03236 163 FDEPSSYLDI 172 (255)
T ss_pred EECCCCCCCH
Confidence 88 9998754
No 322
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=2.9e-19 Score=154.77 Aligned_cols=147 Identities=13% Similarity=0.028 Sum_probs=103.1
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
....+....|.. ...+++++|... |++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ..++.++|
T Consensus 12 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~ 86 (214)
T PRK13543 12 LAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAY 86 (214)
T ss_pred EEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEE
Confidence 445555555543 347889999854 9999999999999999999999999987 9999988776532 33456899
Q ss_pred cCCchHH--------HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354 133 LPEERIR--------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (283)
Q Consensus 133 v~q~~~~--------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p 201 (283)
++|.+.. .+.+....... .....+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGR--RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCC--cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9886421 11111000000 0111234556666666556776666 999999999999998 58888888 9
Q ss_pred CCCCCch
Q 023354 202 SGGDKIP 208 (283)
Q Consensus 202 t~g~~l~ 208 (283)
+++.|..
T Consensus 165 t~~LD~~ 171 (214)
T PRK13543 165 YANLDLE 171 (214)
T ss_pred cccCCHH
Confidence 9987654
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.5e-19 Score=173.01 Aligned_cols=170 Identities=15% Similarity=0.091 Sum_probs=116.6
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+++..|.. ...+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+. +.+||
T Consensus 320 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~ 386 (530)
T PRK15064 320 LEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGY 386 (530)
T ss_pred EEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEE
Confidence 444455555532 357888999855 9999999999999999999999999987 99886542 36888
Q ss_pred cCCchHH-------HHH-hCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 133 LPEERIR-------AVE-TGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 133 v~q~~~~-------~i~-~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
++|++.. ..+ +...... ......+.+.|+.++.. ...+..+.+ |+||+||+.||++++ +|.++|+|
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQWRQE--GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred EcccccccCCCCCcHHHHHHHhccC--CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8886420 001 0000000 01112344567777653 455677777 999999999999998 58888888
Q ss_pred CCCCCCchhh---------cCCc-----------ccccCEEEEEcCCccc-ccCChHHHH
Q 023354 201 VSGGDKIPRK---------GGPG-----------ITQADLLVINKTDLAS-AIGADLAVM 239 (283)
Q Consensus 201 pt~g~~l~~~---------~~~~-----------i~~ad~ivi~K~g~i~-~~g~~~e~~ 239 (283)
|+++.|.... ...+ ..+||++++++.|.++ ..|+..+.+
T Consensus 465 Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 465 PTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999764321 1112 1579999999999987 667665554
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.3e-19 Score=176.72 Aligned_cols=168 Identities=16% Similarity=0.088 Sum_probs=111.2
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
+.++.|.. .+.+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+. ..+||++|.
T Consensus 6 ~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~ 72 (530)
T PRK15064 6 NITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKLRQD 72 (530)
T ss_pred EEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEecc
Confidence 44444432 35789999985 49999999999999999999999999987 99987642 246777775
Q ss_pred hH--------HHHHhCC---------------CCCCC------h------------HHHHHHHHHHHHHcccccc-CCCc
Q 023354 137 RI--------RAVETGG---------------CPHAA------I------------REDISINLGPLEELSNLFK-ADLL 174 (283)
Q Consensus 137 ~~--------~~i~~~g---------------~~~~~------~------------~~~~~~~~~~l~~l~~~~~-~d~~ 174 (283)
+. +.+.++. .+... . .+....+.+.|+.++.... .+..
T Consensus 73 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 73 QFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred CCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 31 1111110 00000 0 0011234456677766432 2445
Q ss_pred ccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCccc-
Q 023354 175 LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLAS- 230 (283)
Q Consensus 175 i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~- 230 (283)
+.+ |+||+||++||++++ +|.++|+| |+++.|... +.+.++ ..||+|++++.|++.
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 556 999999999999998 58888888 999876421 112221 679999999999984
Q ss_pred ccCChHHHH
Q 023354 231 AIGADLAVM 239 (283)
Q Consensus 231 ~~g~~~e~~ 239 (283)
+.|+..+.+
T Consensus 233 ~~g~~~~~~ 241 (530)
T PRK15064 233 YPGNYDEYM 241 (530)
T ss_pred ecCCHHHHH
Confidence 667655443
No 325
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.79 E-value=2.8e-19 Score=148.94 Aligned_cols=107 Identities=21% Similarity=0.198 Sum_probs=81.1
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCC
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~ 146 (283)
...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+. +.++|++|++..
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~q~~~~------- 75 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFLPQRPYL------- 75 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEECCCCcc-------
Confidence 35788899984 59999999999999999999999999987 99987541 578999997531
Q ss_pred CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
...+..+++.. . ...+ |+||+||+.+||+++ +|.++++| |+++.|..
T Consensus 76 ~~~tv~~nl~~-------~--------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 76 PLGTLREQLIY-------P--------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125 (166)
T ss_pred ccccHHHHhhc-------c--------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence 11233332210 0 1233 999999999999998 58888887 99987653
No 326
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=3.7e-19 Score=152.82 Aligned_cols=123 Identities=24% Similarity=0.253 Sum_probs=83.0
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-------H
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------A 140 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------~ 140 (283)
..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+ .++|++|++.. .
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~~~t~~en 85 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTIREN 85 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhccCcHHHH
Confidence 5788999985 59999999999999999999999999987 9998876 57888887641 1
Q ss_pred HHhCCCCCCChHHHHHHHHH------HHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 141 VETGGCPHAAIREDISINLG------PLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 141 i~~~g~~~~~~~~~~~~~~~------~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
+.+. ... . .+......+ .+..+ +.....+....+ |+||+||+++|++++ +|.++++| |+++.|..
T Consensus 86 l~~~-~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 161 (204)
T cd03250 86 ILFG-KPF-D-EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161 (204)
T ss_pred hccC-CCc-C-HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 1111 111 1 111111111 11111 011112333334 999999999999999 48888888 99987643
No 327
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.6e-18 Score=148.15 Aligned_cols=171 Identities=18% Similarity=0.099 Sum_probs=124.2
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEeecCCCCCHHHHHH-hccccCCchHH----
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERIR---- 139 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~~---- 139 (283)
+..|+++++..+ |++.+|+||||||||||.+.|+|.- +.+ |+|.+.+.|+...++.++.+ .+..-+|.|.+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 467889999865 9999999999999999999999964 456 99999999999988777655 47777898752
Q ss_pred ----HHHhCCCC--CC--ChHHHHHHHHHHHHHccccc-cCCCcccC--CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 140 ----AVETGGCP--HA--AIREDISINLGPLEELSNLF-KADLLLCE--SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 140 ----~i~~~g~~--~~--~~~~~~~~~~~~l~~l~~~~-~~d~~i~e--SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
++..+... .. -..+....+.+.++.+.... ..++.+.+ |||+++|..|+..++ .|.+.++| |-+|.|
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 22211100 00 01222334555666666555 67888888 999999999998776 69999999 888976
Q ss_pred chhh------------cCCc----------cc--ccCEEEEEcCCcccccCChHHHHh
Q 023354 207 IPRK------------GGPG----------IT--QADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 207 l~~~------------~~~~----------i~--~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+..- .+.. +. .+|.+-++..|+++..|.+ ++..
T Consensus 177 Idalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 177 IDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHH
Confidence 5321 0111 12 3699999999999999988 5443
No 328
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.78 E-value=7.9e-19 Score=168.13 Aligned_cols=176 Identities=14% Similarity=-0.003 Sum_probs=115.6
Q ss_pred cCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 59 IYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 59 ~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
+..+.|.... .+.+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.+... ....++.++
T Consensus 26 nL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i------~~~~~l~~~ 99 (549)
T PRK13545 26 DLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALI------AISSGLNGQ 99 (549)
T ss_pred EEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeE------EeccccCCC
Confidence 3444444432 35789999985 59999999999999999999999999987 999887754210 001122222
Q ss_pred chH-HHHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-
Q 023354 136 ERI-RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR- 209 (283)
Q Consensus 136 ~~~-~~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~- 209 (283)
... +.+.+... ......+....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++|+| |+++.|...
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr 179 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT 179 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 221 22222111 1111112222344566767666666676766 999999999999998 58888888 999876421
Q ss_pred -----------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 210 -----------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 210 -----------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.+.++ .+||++++++.|++...|++.+++.
T Consensus 180 ~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 180 KKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 111121 5799999999999988887766554
No 329
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.78 E-value=9.8e-19 Score=157.56 Aligned_cols=176 Identities=15% Similarity=0.106 Sum_probs=110.8
Q ss_pred ccCCCCCCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC
Q 023354 45 YHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE 122 (283)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~ 122 (283)
+..+.+..+.+...+.+.. ....+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+
T Consensus 30 ~~~~~~~~~~l~i~nls~~----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------- 98 (282)
T cd03291 30 DRKHSSDDNNLFFSNLCLV----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------- 98 (282)
T ss_pred ccccCCCCCeEEEEEEEEe----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------
Confidence 3333444455555665543 235888999985 59999999999999999999999999987 9988754
Q ss_pred HHHHHHhccccCCchHH-------HHHhCCCCCCChHHHHHHHH------HHHHHccccc--cCCCcccC-CchHHHHHH
Q 023354 123 DGEFLMRNGALPEERIR-------AVETGGCPHAAIREDISINL------GPLEELSNLF--KADLLLCE-SGGDNLAAN 186 (283)
Q Consensus 123 ~~~~~~~ig~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~------~~l~~l~~~~--~~d~~i~e-SgGq~q~~~ 186 (283)
.++|++|++.. .+.++ +... ........ ..+..+.... ..+....+ |+||+||+.
T Consensus 99 ------~i~yv~q~~~l~~~tv~enl~~~-~~~~--~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~ 169 (282)
T cd03291 99 ------RISFSSQFSWIMPGTIKENIIFG-VSYD--EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169 (282)
T ss_pred ------EEEEEeCcccccccCHHHHhhcc-cccC--HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHH
Confidence 26777776531 11111 1110 00111111 1111111000 11112234 999999999
Q ss_pred HHHHhc-CCcEEEEe-CCCCCCchh----------h--cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 187 FSRELA-DYIIYIID-VSGGDKIPR----------K--GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 187 ia~al~-~~~l~llD-pt~g~~l~~----------~--~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|++++ +|.++++| |+++.|... . .+.+ +..||++++++.|.+...|+..+...
T Consensus 170 lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 170 LARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999998 58888888 999865321 0 1111 25799999999999988887766543
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=4e-19 Score=174.25 Aligned_cols=170 Identities=15% Similarity=0.081 Sum_probs=113.0
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+.+..|.. ....+++++|... |++++|+|||||||||||++|+|+++|+ |+|.+... ..+||
T Consensus 7 l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i~~ 74 (556)
T PRK11819 7 YTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKVGY 74 (556)
T ss_pred EEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 344455555542 2468899999855 9999999999999999999999999987 99887431 35888
Q ss_pred cCCchH--------HHHHhCCCC---------------CCC---hH-------------------HHHHHHHHHHHHccc
Q 023354 133 LPEERI--------RAVETGGCP---------------HAA---IR-------------------EDISINLGPLEELSN 167 (283)
Q Consensus 133 v~q~~~--------~~i~~~g~~---------------~~~---~~-------------------~~~~~~~~~l~~l~~ 167 (283)
++|++. +.+.++... ... .. +....+.+.++.++.
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 888742 112111100 000 00 001123344555555
Q ss_pred cccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEE
Q 023354 168 LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVIN 224 (283)
Q Consensus 168 ~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~ 224 (283)
. ..+..+.+ ||||+||+.||++++ +|.++|+| |+++.|... +...++ ..||+|+++
T Consensus 155 ~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 155 P-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred C-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEE
Confidence 3 25666666 999999999999998 58888888 999876432 111121 579999999
Q ss_pred cCCccc-ccCChHH
Q 023354 225 KTDLAS-AIGADLA 237 (283)
Q Consensus 225 K~g~i~-~~g~~~e 237 (283)
+.|.+. +.|+..+
T Consensus 234 ~~g~i~~~~g~~~~ 247 (556)
T PRK11819 234 DRGRGIPWEGNYSS 247 (556)
T ss_pred eCCEEEEecCCHHH
Confidence 999975 5565544
No 331
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=9.4e-19 Score=151.77 Aligned_cols=140 Identities=16% Similarity=0.074 Sum_probs=93.2
Q ss_pred CCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHHHHhccccCC
Q 023354 62 PGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPE 135 (283)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~~~~ig~v~q 135 (283)
+.|+.. .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|++|
T Consensus 8 ~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 86 (218)
T cd03290 8 FSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQ 86 (218)
T ss_pred EecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcC
Confidence 344434 45788999985 59999999999999999999999999887 999998876654321 223457999999
Q ss_pred chHH-------HHHhCCCCCCChHHHHHHHHHHHHHccccc-----------cCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 136 ERIR-------AVETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 136 ~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-----------~~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
++.. .+.+. +.. . .+... +.++.+.+.. ..+..+.+ |+||+||+.||++++ +|.
T Consensus 87 ~~~~~~~t~~~nl~~~-~~~-~-~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 87 KPWLLNATVEENITFG-SPF-N-KQRYK---AVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred CCccccccHHHHHhhc-CcC-C-HHHHH---HHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 8631 11111 111 1 11111 1222221111 12233444 999999999999998 488
Q ss_pred EEEEe-CCCCCCch
Q 023354 196 IYIID-VSGGDKIP 208 (283)
Q Consensus 196 l~llD-pt~g~~l~ 208 (283)
++++| |+++.|..
T Consensus 161 illlDEPt~~LD~~ 174 (218)
T cd03290 161 IVFLDDPFSALDIH 174 (218)
T ss_pred EEEEeCCccccCHH
Confidence 88887 99987654
No 332
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=2.2e-18 Score=148.80 Aligned_cols=171 Identities=18% Similarity=0.096 Sum_probs=115.1
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-HHHHh-C
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVET-G 144 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~i~~-~ 144 (283)
..+|++++|... |+.+||+|+||||||||||+|+|.++|+ |+|.+.+.-.. -+--..|+-|+-.- +.+.+ +
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~-----li~lg~Gf~pelTGreNi~l~~ 114 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP-----LIELGAGFDPELTGRENIYLRG 114 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEeh-----hhhcccCCCcccchHHHHHHHH
Confidence 458999999955 9999999999999999999999999998 99987764321 12224555554332 11111 1
Q ss_pred CCCCCChHHHHHHHHHHHHHc-cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC-CCC-chhh--------
Q 023354 145 GCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG-GDK-IPRK-------- 210 (283)
Q Consensus 145 g~~~~~~~~~~~~~~~~l~~l-~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~-g~~-l~~~-------- 210 (283)
.+...+ ++......+.+.+| .+.+..+.++.. |.||+-|++++.+.. +|-++|+| ..+ |+. ++++
T Consensus 115 ~~~G~~-~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 115 LILGLT-RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred HHhCcc-HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 122122 22222222333333 345677888888 999999999998876 69999998 332 421 1111
Q ss_pred --cCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHh
Q 023354 211 --GGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALR 245 (283)
Q Consensus 211 --~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~ 245 (283)
...+ -++||+++.++.|.+...|++.+++..+...
T Consensus 194 ~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 194 VEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 1112 1799999999999999999999998866443
No 333
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.77 E-value=1e-18 Score=159.68 Aligned_cols=179 Identities=17% Similarity=0.143 Sum_probs=132.6
Q ss_pred CCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCCCCHHHHHH----hc
Q 023354 62 PGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTKEDGEFLM----RN 130 (283)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~~~~~~~~~----~i 130 (283)
|........++++++|... ||+++|+|.+|||||-..+.++++++. +|+|.+.+.++-..+..+++. +|
T Consensus 16 f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I 95 (534)
T COG4172 16 FHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKI 95 (534)
T ss_pred EecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccce
Confidence 3434455568899999865 999999999999999999999999863 479999999998877776654 69
Q ss_pred cccCCchHHH-----------HHhCCCCC-CChHHHHHHHHHHHHHccccc---cCCCcccC-CchHHHHHHHHHHhcC-
Q 023354 131 GALPEERIRA-----------VETGGCPH-AAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELAD- 193 (283)
Q Consensus 131 g~v~q~~~~~-----------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-SgGq~q~~~ia~al~~- 193 (283)
+++||+|..- .+.-.+.. .+.++...++++.|+.+++.. .++.+.-| ||||+||+.||+||+.
T Consensus 96 ~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~ 175 (534)
T COG4172 96 GMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANE 175 (534)
T ss_pred EEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCC
Confidence 9999998411 11101111 111223346677888877655 34555556 9999999999999995
Q ss_pred CcEEEEe-CCCCCC-------------chhhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDK-------------IPRKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~-------------l~~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|.+++-| ||+.+| ++.+.+..+ ++||+|++|..|.+++.|.....|.
T Consensus 176 P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 176 PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247 (534)
T ss_pred CCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence 8899988 999754 233333321 7899999999999999998887775
No 334
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=2.6e-19 Score=152.84 Aligned_cols=127 Identities=11% Similarity=0.009 Sum_probs=89.7
Q ss_pred cccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHh
Q 023354 74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (283)
Q Consensus 74 ~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~ 143 (283)
+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... .+.++|++|... +.+.+
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEeccCCcCCCccCCHHHHHHH
Confidence 488874 59999999999999999999999999988 99999887765321 245788887541 11111
Q ss_pred CCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 144 ~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
..... .....+.+.++.+......+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus 94 ~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~ 157 (195)
T PRK13541 94 WSEIY----NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE 157 (195)
T ss_pred HHHhc----ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 10000 0111234455666555555655556 999999999999999 58888888 99987754
No 335
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=4.6e-19 Score=148.00 Aligned_cols=169 Identities=17% Similarity=0.040 Sum_probs=127.2
Q ss_pred CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe-ecCCCCCHHHHHH-hccccCCchHHH------
Q 023354 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT-NDIFTKEDGEFLM-RNGALPEERIRA------ 140 (283)
Q Consensus 71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~-~d~~~~~~~~~~~-~ig~v~q~~~~~------ 140 (283)
++++.+|... |+.-+|||||||||||++..|+|..+|+ |++.+.+ .|+..++..++.+ .||--||.|..+
T Consensus 20 Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~ 99 (249)
T COG4674 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVR 99 (249)
T ss_pred eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHH
Confidence 7889999855 9999999999999999999999999998 9999999 8888887766654 588889987422
Q ss_pred --HHhCCCCCCCh---------HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCC
Q 023354 141 --VETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDK 206 (283)
Q Consensus 141 --i~~~g~~~~~~---------~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~ 206 (283)
+++..+....+ .+...++.+.|...++.+..+..-.. |.||+|++.|.+-+++ |.++++| |..|..
T Consensus 100 eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMT 179 (249)
T COG4674 100 ENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT 179 (249)
T ss_pred HHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCc
Confidence 22222222111 12223566778888887877777776 9999999999998885 9999998 888842
Q ss_pred ch-------------hhcCCc---------ccccCEEEEEcCCcccccCChHHHH
Q 023354 207 IP-------------RKGGPG---------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 207 l~-------------~~~~~~---------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
-. .+.... -++|++|-++..|.+.++|+..++-
T Consensus 180 d~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 180 DAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 11 111000 1789999999999999998775543
No 336
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.77 E-value=3.3e-18 Score=167.64 Aligned_cols=170 Identities=14% Similarity=0.052 Sum_probs=110.5
Q ss_pred ccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (283)
...+.+..|.+ ....+++++|... |++++|+|||||||||||++|+|+++|+ |.|.+.. ...+||+
T Consensus 6 ~~~nls~~~~~-~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~v 73 (552)
T TIGR03719 6 TMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGYL 73 (552)
T ss_pred EEeeEEEecCC-CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEEE
Confidence 34455555542 2357899999855 9999999999999999999999999987 9987642 1358888
Q ss_pred CCchH--------HHHHhCCCC---------------CCChHH----------------------HHHHHHHHHHHcccc
Q 023354 134 PEERI--------RAVETGGCP---------------HAAIRE----------------------DISINLGPLEELSNL 168 (283)
Q Consensus 134 ~q~~~--------~~i~~~g~~---------------~~~~~~----------------------~~~~~~~~l~~l~~~ 168 (283)
+|++. +.+.++... .....+ ....+.+.++.++..
T Consensus 74 ~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 153 (552)
T TIGR03719 74 PQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP 153 (552)
T ss_pred eccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC
Confidence 88752 112111100 000000 001122334444432
Q ss_pred ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEEc
Q 023354 169 FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVINK 225 (283)
Q Consensus 169 ~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K 225 (283)
..+..+.+ |+||+||+.||++++ +|.++|+| |+++.|... +...++ ..||++++++
T Consensus 154 -~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~ 232 (552)
T TIGR03719 154 -PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELD 232 (552)
T ss_pred -cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEE
Confidence 24566666 999999999999998 48888888 999876421 111121 5789999999
Q ss_pred CCccc-ccCChHHH
Q 023354 226 TDLAS-AIGADLAV 238 (283)
Q Consensus 226 ~g~i~-~~g~~~e~ 238 (283)
.|.+. +.|+..+.
T Consensus 233 ~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 233 RGRGIPWEGNYSSW 246 (552)
T ss_pred CCEEEEecCCHHHH
Confidence 99865 55665543
No 337
>PLN03232 ABC transporter C family member; Provisional
Probab=99.77 E-value=6.7e-19 Score=188.88 Aligned_cols=174 Identities=18% Similarity=0.126 Sum_probs=122.9
Q ss_pred CccccccCCCCCCCC-CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 53 PHSHEPIYSPGYFSR-RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
+.+.+.+++|.|+.. ..+.+++++|..+ |++++|+||+|||||||+++|+|+++|. |.+.. ++..
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~------------~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV------------IRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE------------ecCc
Confidence 357788899998864 3567999999855 9999999999999999999999999987 77631 3457
Q ss_pred ccccCCchHH------HHHhCCCCCCChHHHHHHHHHH--HH-Hc-cccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354 130 NGALPEERIR------AVETGGCPHAAIREDISINLGP--LE-EL-SNLFKADLLLCE-----SGGDNLAANFSRELA-D 193 (283)
Q Consensus 130 ig~v~q~~~~------~i~~~g~~~~~~~~~~~~~~~~--l~-~l-~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~ 193 (283)
++||+|++.. .+.+.|.+. ..+....+.+. |. .+ ...++.+..++| |||||||+++|||+. +
T Consensus 681 Iayv~Q~p~Lf~gTIreNI~fg~~~--~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 758 (1495)
T PLN03232 681 VAYVPQVSWIFNATVRENILFGSDF--ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1495)
T ss_pred EEEEcCccccccccHHHHhhcCCcc--CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcC
Confidence 9999999752 222223332 22233332221 11 11 123466777877 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCchh------h------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPR------K------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~------~------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.|+++| |+++.|... + .+.+ +..||+|++++.|++.+.|+..+.+.
T Consensus 759 ~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 759 SDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 6666666 999865221 0 0111 37899999999999999998776653
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9.8e-19 Score=173.88 Aligned_cols=168 Identities=15% Similarity=0.059 Sum_probs=116.2
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+++..|.. ...+.+++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+... ..+||
T Consensus 313 l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy 379 (638)
T PRK10636 313 LKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGY 379 (638)
T ss_pred EEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEE
Confidence 445555555532 35788899985 59999999999999999999999999987 99887421 25788
Q ss_pred cCCchHHH-------HH-hCCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 133 LPEERIRA-------VE-TGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 133 v~q~~~~~-------i~-~~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
++|..... .. +... ........+...|..+.... ..+..+.+ ||||+||+.||++++ +|.|+|+|
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARL---APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred ecCcchhhCCccchHHHHHHHh---CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 88863211 00 0000 00111123455677776642 45666666 999999999999998 48888888
Q ss_pred CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCccc-ccCChHHH
Q 023354 201 VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLAS-AIGADLAV 238 (283)
Q Consensus 201 pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~-~~g~~~e~ 238 (283)
||++.|+.. .+..++ .+||+|++++.|.+. +.|+..+.
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 999976532 111121 679999999999986 66766554
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.76 E-value=1.5e-18 Score=184.77 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=119.3
Q ss_pred CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc---CC-CcEEEEeecCCCCCHHHHHHhccccCCchH----
Q 023354 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (283)
Q Consensus 68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~---~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---- 138 (283)
....++++++..+ |++++|+|||||||||||++|+|+.+ ++ |+|.+++.++. ..+++.+||++|+..
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~ 850 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPT 850 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCC
Confidence 3467899999854 99999999999999999999999987 56 99999988763 245678999999742
Q ss_pred ----HHHHhCCC---CC-CChHHHHHHHHHHHHHccccccCCCccc----C-CchHHHHHHHHHHhc-CCc-EEEEe-CC
Q 023354 139 ----RAVETGGC---PH-AAIREDISINLGPLEELSNLFKADLLLC----E-SGGDNLAANFSRELA-DYI-IYIID-VS 202 (283)
Q Consensus 139 ----~~i~~~g~---~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~----e-SgGq~q~~~ia~al~-~~~-l~llD-pt 202 (283)
+.+.+... +. ....+....+.+.++.+++.+..|..+. . |+||+||+.||++|+ +|. |+++| ||
T Consensus 851 ~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT 930 (1394)
T TIGR00956 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT 930 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence 22222111 11 1112223355677888887777788776 3 999999999999998 574 67776 99
Q ss_pred CCCCchh------------hcCCc------------ccccCEEEEEcCC-cccccCCh
Q 023354 203 GGDKIPR------------KGGPG------------ITQADLLVINKTD-LASAIGAD 235 (283)
Q Consensus 203 ~g~~l~~------------~~~~~------------i~~ad~ivi~K~g-~i~~~g~~ 235 (283)
+|.|... +.+.+ +..+|++++++.| ++.+.|+.
T Consensus 931 sgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 931 SGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 9976321 11111 2468999999987 99888875
No 340
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.76 E-value=1.2e-19 Score=149.13 Aligned_cols=177 Identities=13% Similarity=0.084 Sum_probs=131.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCCh----HHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI----REDI 155 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~----~~~~ 155 (283)
.|+++-++|||||||||||..++|+++.+|+|.+.+.++..+...++.+.-+|+.|...-...+..+.+.+. .+..
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a 103 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRT 103 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHH
Confidence 499999999999999999999999998889999999999988888999988998876432222222222111 2222
Q ss_pred HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC--------CcEEEEe-CCCCCCchhhc--------------
Q 023354 156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD--------YIIYIID-VSGGDKIPRKG-------------- 211 (283)
Q Consensus 156 ~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~--------~~l~llD-pt~g~~l~~~~-------------- 211 (283)
..+.+....+.+.+...+.+.. |||+.||+.+|....+ ..++++| |.++.|+..+.
T Consensus 104 ~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~ 183 (248)
T COG4138 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183 (248)
T ss_pred HHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCc
Confidence 2333444555566666666666 9999999999976542 4577777 98887654321
Q ss_pred ---------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEE
Q 023354 212 ---------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 256 (283)
Q Consensus 212 ---------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~is 256 (283)
+.+++.||.++++|.|++...|...+++....+...|+..+-...
T Consensus 184 ~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~fg~~frr~~ 237 (248)
T COG4138 184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNFRRLD 237 (248)
T ss_pred EEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHhccceEEEe
Confidence 123488999999999999999999999999999988887765544
No 341
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.76 E-value=2.7e-18 Score=148.64 Aligned_cols=159 Identities=14% Similarity=-0.008 Sum_probs=97.0
Q ss_pred CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEE-EEeecCCCCCHHHHHHhccccCCch-HHHHHhC-C
Q 023354 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-AVTNDIFTKEDGEFLMRNGALPEER-IRAVETG-G 145 (283)
Q Consensus 71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~-i~~~d~~~~~~~~~~~~ig~v~q~~-~~~i~~~-g 145 (283)
++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|. +.+..+. .. ....+.+.-. .+.+.+. .
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-~~-----~~~~l~~~ltv~enl~~~~~ 75 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-LG-----ANSFILPGLTGEENARMMAS 75 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-cc-----cccccCCcCcHHHHHHHHHH
Confidence 4678888854 9999999999999999999999999887 9986 4443221 00 0111222111 1222221 1
Q ss_pred CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch----------hhc-
Q 023354 146 CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP----------RKG- 211 (283)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~----------~~~- 211 (283)
..... ...... ..+..+......+..+.+ |+||+||+++|++++ +|.++++| |+++.+.. +..
T Consensus 76 ~~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~ 152 (213)
T PRK15177 76 LYGLD-GDEFSH--FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ 152 (213)
T ss_pred HcCCC-HHHHHH--HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh
Confidence 00111 111111 111222333445666666 999999999999998 58888888 77764321 111
Q ss_pred CCc----------c-cccCEEEEEcCCcccccCChHHH
Q 023354 212 GPG----------I-TQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 212 ~~~----------i-~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
..+ + .+||++++++.|++.+.++..+.
T Consensus 153 ~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 153 QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 111 1 57999999999999887655444
No 342
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.76 E-value=9e-18 Score=153.73 Aligned_cols=190 Identities=19% Similarity=0.194 Sum_probs=131.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-------HHHHHHhccccCCchHHHH-HhCCCCCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAV-ETGGCPHA 149 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-------~~~~~~~ig~v~q~~~~~i-~~~g~~~~ 149 (283)
.+..+|+|+|++|||||||++.|...+... .++.++..|+.... ++.+...++ .++..++ .++++.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~---~~~~~~~r~~~~~~-- 128 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLS---RHPNAFIRPSPSSG-- 128 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhc---CCCCeEEEecCCcc--
Confidence 446799999999999999999999988865 58999999987542 222222222 1111122 123322
Q ss_pred ChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcc
Q 023354 150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 229 (283)
Q Consensus 150 ~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i 229 (283)
........+.+.+..+ ...++|.+++|+.|..|....+..++|..+++++|.+|++++.....++++||.+|+||+|++
T Consensus 129 ~l~~~a~~~~~~~~~~-~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 129 TLGGVARKTRETMLLC-EAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGD 207 (332)
T ss_pred cccchHHHHHHHHHHH-hccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhccc
Confidence 2222222334444444 456899999999998887766777889999999999999887654446799999999999988
Q ss_pred cccCChHHHHhHHHHhhc---C-----C-CCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 230 SAIGADLAVMERDALRMR---D-----G-GPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 230 ~~~g~~~e~~~~~~~~~~---~-----~-~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
...+ .+.....+.... . + .|++.+|++++.|+++|++++...++.
T Consensus 208 ~~~~--a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 208 NKTA--ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred chhH--HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6532 222222222211 1 2 689999999999999999999987653
No 343
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=4.1e-18 Score=167.01 Aligned_cols=167 Identities=13% Similarity=0.070 Sum_probs=109.2
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+++..|.. ...+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+ +.+ ..+||
T Consensus 323 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~----------~~i~~ 389 (552)
T TIGR03719 323 IEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GET----------VKLAY 389 (552)
T ss_pred EEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCc----------eEEEE
Confidence 444455555532 357888999855 9999999999999999999999999987 99876 322 15888
Q ss_pred cCCchH---------HHHHhCCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 133 LPEERI---------RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 133 v~q~~~---------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
++|++. +.+..+..... .........+.++.++... ..+..+.+ |+||+||++||++++ +|.++++|
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD 468 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQ-LGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD 468 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccc-cCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 888741 11222111000 0000112335677776643 35666777 999999999999998 48888888
Q ss_pred -CCCCCCchhh---------cCCc-----------ccccCEEEEEcC-Cccc-ccCCh
Q 023354 201 -VSGGDKIPRK---------GGPG-----------ITQADLLVINKT-DLAS-AIGAD 235 (283)
Q Consensus 201 -pt~g~~l~~~---------~~~~-----------i~~ad~ivi~K~-g~i~-~~g~~ 235 (283)
|+++.|.... ...+ ..+||++++++. |.+. ..|..
T Consensus 469 EPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 469 EPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 9999764321 1111 156888888875 4554 33444
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.4e-18 Score=172.71 Aligned_cols=167 Identities=14% Similarity=0.017 Sum_probs=107.8
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC----CCCCHHHHHHhccccCCchHHHHH
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI----FTKEDGEFLMRNGALPEERIRAVE 142 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~----~~~~~~~~~~~ig~v~q~~~~~i~ 142 (283)
...+++++|... |++++|+|||||||||||++|+|++.|+ |.|.+.+... .+......+..+++++|....+..
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~ 93 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ 93 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHH
Confidence 357899999855 9999999999999999999999999887 9998765421 110100012234555543211100
Q ss_pred hC-------CCCC----CCh---------HHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 143 TG-------GCPH----AAI---------REDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 143 ~~-------g~~~----~~~---------~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
+. .... ... ......+...|..++.. ...+..+.+ ||||+||++||++|+ +|.|+|+
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLL 173 (638)
T PRK10636 94 LEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLL 173 (638)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEE
Confidence 00 0000 000 00112345567777765 356777777 999999999999998 5888888
Q ss_pred e-CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCcccc-cCCh
Q 023354 200 D-VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLASA-IGAD 235 (283)
Q Consensus 200 D-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~~-~g~~ 235 (283)
| ||++.|... .+..++ ..||+|++++.|.+.. .|..
T Consensus 174 DEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~ 231 (638)
T PRK10636 174 DEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNY 231 (638)
T ss_pred cCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCH
Confidence 8 999976432 112221 6799999999999853 4443
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.75 E-value=2.2e-18 Score=185.16 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=118.0
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.+...++++.|.....+.+++++|.. +|++++|+||||||||||+++|+|+++|. |+|.+.+ .++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 702 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVA 702 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEE
Confidence 46677888888765567899999985 59999999999999999999999999987 9988754 488
Q ss_pred ccCCchH-------HHHHhCCCCCCChHHHHHHHHHH---HHHccc-cccCCCcccC-----CchHHHHHHHHHHhc-CC
Q 023354 132 ALPEERI-------RAVETGGCPHAAIREDISINLGP---LEELSN-LFKADLLLCE-----SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 132 ~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~---l~~l~~-~~~~d~~i~e-----SgGq~q~~~ia~al~-~~ 194 (283)
|++|++. +.+.++ .+. ..+....+.+. .+.+.. ..+.+..+.+ ||||+||+++||++. ++
T Consensus 703 yv~Q~~~l~~~Ti~eNI~~g-~~~--~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~ 779 (1522)
T TIGR00957 703 YVPQQAWIQNDSLRENILFG-KAL--NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 779 (1522)
T ss_pred EEcCCccccCCcHHHHhhcC-Ccc--CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999864 122222 221 11222222221 122221 1233444444 999999999999998 47
Q ss_pred cEEEEe-CCCCCCchh--------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 195 IIYIID-VSGGDKIPR--------------KGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 195 ~l~llD-pt~g~~l~~--------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.++++| |+++.|... ..+.+ +..||+|++++.|++.+.|+..+.+.
T Consensus 780 ~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 780 DIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 666666 999865311 01111 26699999999999999888766653
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=99.75 E-value=1.9e-18 Score=173.16 Aligned_cols=167 Identities=16% Similarity=0.092 Sum_probs=114.7
Q ss_pred ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.+...++++.|.. ....+.+++|... |++++|+|||||||||||++|+|+++|+ |+|.+.. ...+|
T Consensus 508 ~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ig 575 (718)
T PLN03073 508 IISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMA 575 (718)
T ss_pred eEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEE
Confidence 4556666776643 2347888999854 9999999999999999999999999987 9887532 13588
Q ss_pred ccCCchHHH--------HHh-CCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 132 ALPEERIRA--------VET-GGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 132 ~v~q~~~~~--------i~~-~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
|++|..... ..+ ...+... ...+...|+.++... ..+..+.+ ||||+||++||++++ +|.++|+
T Consensus 576 yv~Q~~~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLL 651 (718)
T PLN03073 576 VFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL 651 (718)
T ss_pred EEeccccccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888864210 000 0011111 123445677776653 44566666 999999999999998 5888888
Q ss_pred e-CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCccc-ccCChH
Q 023354 200 D-VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLAS-AIGADL 236 (283)
Q Consensus 200 D-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~-~~g~~~ 236 (283)
| ||++.|... ....++ ..||++++++.|.+. ..|+..
T Consensus 652 DEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 652 DEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFH 710 (718)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 8 999976431 111121 578999999999887 455443
No 347
>PLN03130 ABC transporter C family member; Provisional
Probab=99.75 E-value=2.4e-18 Score=185.25 Aligned_cols=173 Identities=20% Similarity=0.176 Sum_probs=122.1
Q ss_pred CccccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEEeecCCCCCHHHHHH
Q 023354 53 PHSHEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLM 128 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~~~d~~~~~~~~~~~ 128 (283)
+.+.+.+++|.|+... .+.+++++|.. +|++++|+||+|||||||+++|+|++.|. |+|.+ +.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~ 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RG 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cC
Confidence 3577888899987643 56799999985 49999999999999999999999999874 57752 35
Q ss_pred hccccCCchH------HHHHhCCCCCCChHHHHHHHHHH--HHH-c-cccccCCCcccC-----CchHHHHHHHHHHhc-
Q 023354 129 RNGALPEERI------RAVETGGCPHAAIREDISINLGP--LEE-L-SNLFKADLLLCE-----SGGDNLAANFSRELA- 192 (283)
Q Consensus 129 ~ig~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~~--l~~-l-~~~~~~d~~i~e-----SgGq~q~~~ia~al~- 192 (283)
.++||+|++. +.+.+.|.+. ..+....+.+. |.. + ....+.+..++| |||||||+++|||+.
T Consensus 680 ~Iayv~Q~p~LfngTIreNI~fg~~~--d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~ 757 (1622)
T PLN03130 680 TVAYVPQVSWIFNATVRDNILFGSPF--DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1622)
T ss_pred eEEEEcCccccCCCCHHHHHhCCCcc--cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 7999999975 2222333332 22233332221 111 1 123456777777 999999999999998
Q ss_pred CCcEEEEe-CCCCCCchh------h------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 193 DYIIYIID-VSGGDKIPR------K------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 193 ~~~l~llD-pt~g~~l~~------~------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.|+++| |+++.|... + .+.+ +..||+|++++.|++.+.|+..+.+.
T Consensus 758 ~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 758 NSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 56666666 999865311 0 0111 37899999999999999998777653
No 348
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.75 E-value=2.3e-18 Score=140.28 Aligned_cols=86 Identities=15% Similarity=0.242 Sum_probs=73.6
Q ss_pred CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (283)
Q Consensus 70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~ 147 (283)
..+.+.+|. .+|++++|+|+||||||||+++|+|+++|+ |+|.+.+. ..++|++|
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~~------------ 70 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ------------ 70 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEEcc------------
Confidence 477888888 459999999999999999999999999987 99988663 35777776
Q ss_pred CCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
-|+||+||+++||+++ +|.++++| |+++.|.
T Consensus 71 -----------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 2999999999999998 57787777 9998764
No 349
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=9.2e-18 Score=164.67 Aligned_cols=169 Identities=12% Similarity=0.052 Sum_probs=110.4
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+++..|.. ...+.+++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+ +.+ ..+||
T Consensus 325 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~----------~~i~~ 391 (556)
T PRK11819 325 IEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GET----------VKLAY 391 (556)
T ss_pred EEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc----------eEEEE
Confidence 444555555532 357888999855 9999999999999999999999999987 99976 322 15889
Q ss_pred cCCch-H--------HHHHhCCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 133 LPEER-I--------RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 133 v~q~~-~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
++|+. . +.+.++. ...............++.++... ..+..+.+ |+||+||+.||++++ +|.++++|
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 470 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGL-DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhc-ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 98874 1 1121211 00000000112234677776643 35666777 999999999999998 58888888
Q ss_pred -CCCCCCchhh---------cCCc-----------ccccCEEEEEcC-Cccc-ccCChHH
Q 023354 201 -VSGGDKIPRK---------GGPG-----------ITQADLLVINKT-DLAS-AIGADLA 237 (283)
Q Consensus 201 -pt~g~~l~~~---------~~~~-----------i~~ad~ivi~K~-g~i~-~~g~~~e 237 (283)
|+++.|.... ...+ ..+||++++++. |.+. ..|...+
T Consensus 471 EPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 471 EPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 9999764321 1111 156888888875 5554 3444433
No 350
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.75 E-value=4.1e-18 Score=181.50 Aligned_cols=170 Identities=9% Similarity=-0.035 Sum_probs=118.1
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc----cCC-CcEEEEeecCCCCCHHHHHHhccccCCchH----
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL----RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~----~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---- 138 (283)
...++++++.. +|++++|+||||||||||||+|+|+. .|. |+|.+.+.++.... ...++.++|++|+..
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45788898885 59999999999999999999999986 344 99999887764321 233456999999742
Q ss_pred ----HHHHhCCC---CC----CChHHH-HHH-HHHHHHHccccccCCCccc-----C-CchHHHHHHHHHHhc-CCcEEE
Q 023354 139 ----RAVETGGC---PH----AAIRED-ISI-NLGPLEELSNLFKADLLLC-----E-SGGDNLAANFSRELA-DYIIYI 198 (283)
Q Consensus 139 ----~~i~~~g~---~~----~~~~~~-~~~-~~~~l~~l~~~~~~d~~i~-----e-SgGq~q~~~ia~al~-~~~l~l 198 (283)
+.+.++.. +. ...++. ... ....++.+++.+..+..++ . ||||+||+.||++++ +|.|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 22322211 11 011222 222 2346777877766665543 3 999999999999998 588888
Q ss_pred Ee-CCCCCCch-------------hhcCCc------------ccccCEEEEEcCCcccccCChHHHH
Q 023354 199 ID-VSGGDKIP-------------RKGGPG------------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 199 lD-pt~g~~l~-------------~~~~~~------------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+| ||+|+|.. ++.+.+ .+.+|+|++++.|++++.|+..+..
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 87 99997532 111211 2578999999999999998876553
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.75 E-value=5.3e-18 Score=168.70 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=110.7
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+++..|.. ...+.+++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+ +.. ..+||
T Consensus 320 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~----------~~i~y 386 (635)
T PRK11147 320 FEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK----------LEVAY 386 (635)
T ss_pred EEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC----------cEEEE
Confidence 444555555532 34788889885 59999999999999999999999999987 99876 432 15788
Q ss_pred cCCchH---------HHHHhCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 133 LPEERI---------RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 133 v~q~~~---------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
++|... +.+..+ ............+...|..+... ...+..+.+ ||||+||+.||++++ +|.++|+|
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD 465 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEG-KQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD 465 (635)
T ss_pred EeCcccccCCCCCHHHHHHhh-cccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 888631 112221 11110011112344566666553 345666666 999999999999998 48888888
Q ss_pred -CCCCCCchh---------hcCCcc-----------cccCEEEEEc-CCccccc
Q 023354 201 -VSGGDKIPR---------KGGPGI-----------TQADLLVINK-TDLASAI 232 (283)
Q Consensus 201 -pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K-~g~i~~~ 232 (283)
||++.|... .+..++ .+||++++++ .|.+...
T Consensus 466 EPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 466 EPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 999976532 111121 6799999997 7887653
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=7.2e-18 Score=165.97 Aligned_cols=142 Identities=16% Similarity=0.121 Sum_probs=100.6
Q ss_pred ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHH
Q 023354 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (283)
Q Consensus 72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i 141 (283)
+..++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+. ..++|+||+.. +.+
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHHH
Confidence 6667776 459999999999999999999999999987 988763 14788888642 112
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------
Q 023354 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR--------- 209 (283)
Q Consensus 142 ~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~--------- 209 (283)
..+.... . .. ....+.|+.+++....+..+.+ ||||+||++||++++ +|.|+|+| ||++.|...
T Consensus 422 ~~~~~~~-~-~~--~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~ 497 (590)
T PRK13409 422 RSITDDL-G-SS--YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR 497 (590)
T ss_pred HHHhhhc-C-hH--HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 1111000 0 01 1234577777777667888877 999999999999998 48888888 999976421
Q ss_pred ----hcCCc-----------ccccCEEEEEcCCcccc
Q 023354 210 ----KGGPG-----------ITQADLLVINKTDLASA 231 (283)
Q Consensus 210 ----~~~~~-----------i~~ad~ivi~K~g~i~~ 231 (283)
+.+.+ ..+||++++++. .+..
T Consensus 498 ~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~ 533 (590)
T PRK13409 498 RIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGK 533 (590)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-ccee
Confidence 11222 167999999975 5544
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.74 E-value=7.1e-18 Score=141.77 Aligned_cols=110 Identities=16% Similarity=0.102 Sum_probs=79.0
Q ss_pred CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCC
Q 023354 67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG 145 (283)
Q Consensus 67 ~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g 145 (283)
..++++++++|..+ |++++|+|||||||||||+++++ ..|++.+.+... .. .+..++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~-~~----~~~~~~~~~q---------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLP-KF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCccc-cc----ccccEEEEhH----------
Confidence 34567889999855 99999999999999999999864 358887654321 11 1234566654
Q ss_pred CCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-C--CcEEEEe-CCCCCCc
Q 023354 146 CPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D--YIIYIID-VSGGDKI 207 (283)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~--~~l~llD-pt~g~~l 207 (283)
.+.++.+.+.. ..+..+.+ |+||+||+++|++++ + |.++++| |+++.+.
T Consensus 68 -------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 -------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred -------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 13455555443 24555555 999999999999998 6 8888888 9998653
No 354
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.74 E-value=5.1e-18 Score=169.37 Aligned_cols=144 Identities=14% Similarity=0.002 Sum_probs=97.5
Q ss_pred CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.++++.|+++ ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |++.+.. ++.
T Consensus 449 ~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~ 516 (659)
T TIGR00954 449 DNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGK 516 (659)
T ss_pred CCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCc
Confidence 3557788888877643 36789999985 49999999999999999999999999887 8876531 356
Q ss_pred ccccCCchH-------HHHHhCCCCCC--ChHHHHHHHHHHHHHccccccCCCc------c---cC-CchHHHHHHHHHH
Q 023354 130 NGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSNLFKADLL------L---CE-SGGDNLAANFSRE 190 (283)
Q Consensus 130 ig~v~q~~~-------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~~~~d~~------i---~e-SgGq~q~~~ia~a 190 (283)
++|++|++. +.+..+..... ........+.+.++.++..+..+.+ . .+ ||||+||+++||+
T Consensus 517 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 517 LFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred EEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 899999863 22222211000 0000011233455555443322221 1 22 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCc
Q 023354 191 LA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l 207 (283)
++ +|.++++| |+++.|.
T Consensus 597 l~~~p~illLDEpts~LD~ 615 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSV 615 (659)
T ss_pred HHcCCCEEEEeCCccCCCH
Confidence 98 48888887 9998764
No 355
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.73 E-value=2.1e-17 Score=139.07 Aligned_cols=86 Identities=23% Similarity=0.154 Sum_probs=69.6
Q ss_pred Cccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCC
Q 023354 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (283)
Q Consensus 71 ~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~ 148 (283)
++.+. |. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+. .++|++|...
T Consensus 15 ~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~q~~~---------- 71 (177)
T cd03222 15 LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKPQYID---------- 71 (177)
T ss_pred EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEcccCC----------
Confidence 44443 44 569999999999999999999999999987 99988764 2567776421
Q ss_pred CChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 149 AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 149 ~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
-|+||+||+++|++++ +|.++++| |+++.|.
T Consensus 72 ----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~ 104 (177)
T cd03222 72 ----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104 (177)
T ss_pred ----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 2999999999999998 58888887 9998653
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.72 E-value=2.1e-17 Score=176.10 Aligned_cols=163 Identities=16% Similarity=0.079 Sum_probs=115.6
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC---CCcEEEEeecCCCCCHHHHHHhccccCCchH-------
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (283)
..++++++.. +|++++|+|||||||||||++|+|...+ +|+|.+.+.+.. ...+++.+||++|+..
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~---~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---QETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC---hHHhhhheEEEccccccCCCCcH
Confidence 5678888885 4999999999999999999999998763 388988776542 2345567999999752
Q ss_pred -HHHHhCC---CCCC-ChHHHHHHHHHHHHHccccccCCCccc-----C-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354 139 -RAVETGG---CPHA-AIREDISINLGPLEELSNLFKADLLLC-----E-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (283)
Q Consensus 139 -~~i~~~g---~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~-----e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~ 205 (283)
+.+.+.. .+.. ...+....+.+.++.+++....+..++ . ||||+||+.||++|+ +|.|+++| ||+|+
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 2222211 1111 112222345667788877766677653 3 999999999999998 58888887 99997
Q ss_pred Cchh------------hcCCc------------ccccCEEEEEcC-CcccccCCh
Q 023354 206 KIPR------------KGGPG------------ITQADLLVINKT-DLASAIGAD 235 (283)
Q Consensus 206 ~l~~------------~~~~~------------i~~ad~ivi~K~-g~i~~~g~~ 235 (283)
|... +.+.+ +..+|++++++. |++++.|+.
T Consensus 1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 6321 11111 267899999996 898888875
No 357
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.72 E-value=3.8e-17 Score=167.63 Aligned_cols=207 Identities=19% Similarity=0.132 Sum_probs=147.5
Q ss_pred CCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-HHHHHHhccccCCchHHH
Q 023354 64 YFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRA 140 (283)
Q Consensus 64 ~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~ 140 (283)
|..... +.+++++.. +||++|++|+|||||||++++|+|..+|+ |++.+.+.++.... ..+.++.+||.||.....
T Consensus 574 y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~ 652 (885)
T KOG0059|consen 574 YGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALW 652 (885)
T ss_pred ecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhh
Confidence 443333 788888885 49999999999999999999999999998 99999888887543 445788999999985422
Q ss_pred HHhCCCCCC--------ChHHHHH-HHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 141 VETGGCPHA--------AIREDIS-INLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 141 i~~~g~~~~--------~~~~~~~-~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
-.+.+..+. -.+.++. .+...++.+.+.+..+..+.. |||+++|+.+|.+++ +|.++++| |++|.|..
T Consensus 653 ~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~ 732 (885)
T KOG0059|consen 653 EELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK 732 (885)
T ss_pred hhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence 222221111 1122333 345677888888888888777 999999999999998 58877777 99998753
Q ss_pred hh------------cCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354 209 RK------------GGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 209 ~~------------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~ 265 (283)
.+ .+..+ ..|+|+.++-.|++...|++.+ ++......-++.+..+.....++
T Consensus 733 arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~-----LKsrfG~gy~l~~~~~~~~~~~~ 807 (885)
T KOG0059|consen 733 ARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQE-----LKSRYGSGYTLTVRIKELPEVSE 807 (885)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHH-----HHhhcCCcEEEEEEECCCcccch
Confidence 21 11111 5799999999999999998854 34444555566666665444456
Q ss_pred HHHHHHHHHHH
Q 023354 266 IVNHILQAWEA 276 (283)
Q Consensus 266 l~~~l~~~~~~ 276 (283)
+...+...++.
T Consensus 808 v~~~~~~~~p~ 818 (885)
T KOG0059|consen 808 VEKLLQNRFPG 818 (885)
T ss_pred HHHHHHHhCCC
Confidence 66666665544
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=99.71 E-value=8.9e-18 Score=165.32 Aligned_cols=153 Identities=19% Similarity=0.108 Sum_probs=102.7
Q ss_pred CCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEE-----------EEeecCCCCCHHHH---HHhccccC
Q 023354 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEF---LMRNGALP 134 (283)
Q Consensus 70 ~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~-----------i~~~d~~~~~~~~~---~~~ig~v~ 134 (283)
..|.+++...+|++++|+||||||||||||+|+|+++|+ |+|. +.+.++..... .+ ...+++.+
T Consensus 88 ~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~-~~~~~~~~~~~~~ 166 (590)
T PRK13409 88 FKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK-KLYNGEIKVVHKP 166 (590)
T ss_pred eeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH-HHhccCcceeecc
Confidence 467777755679999999999999999999999999998 9986 55555432111 11 12245555
Q ss_pred CchHHHHHhCCCCCCChHH------HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354 135 EERIRAVETGGCPHAAIRE------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (283)
Q Consensus 135 q~~~~~i~~~g~~~~~~~~------~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~ 205 (283)
|.......+ + ..++.+ ....+.+.++.+++....++.+.+ |+||+||++||++++ +|.++++| |++++
T Consensus 167 q~~~~~p~~--~-~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~L 243 (590)
T PRK13409 167 QYVDLIPKV--F-KGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYL 243 (590)
T ss_pred cchhhhhhh--h-cchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 543211110 0 001111 122445677777777667888877 999999999999998 58888888 99987
Q ss_pred Cchh---------hc--CCcc-----------cccCEEEEEcC
Q 023354 206 KIPR---------KG--GPGI-----------TQADLLVINKT 226 (283)
Q Consensus 206 ~l~~---------~~--~~~i-----------~~ad~ivi~K~ 226 (283)
|... +. +.++ ..||+++++..
T Consensus 244 D~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 244 DIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 6431 11 2221 67999999965
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.8e-17 Score=136.50 Aligned_cols=98 Identities=22% Similarity=0.322 Sum_probs=82.2
Q ss_pred CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (283)
Q Consensus 70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~ 147 (283)
..+.+.+|. .+|++++|+|+||||||||+++|+|++++. |++.+.+.++.......+.+.++|++|
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------ 80 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ------------ 80 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee------------
Confidence 478888888 459999999999999999999999999987 999999887765445555667888776
Q ss_pred CCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
-|+||+||+.++++++ +|.++++| |+++.|..
T Consensus 81 -----------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~ 114 (157)
T cd00267 81 -----------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 2999999999999998 57777777 99987653
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=9.9e-17 Score=131.97 Aligned_cols=170 Identities=22% Similarity=0.211 Sum_probs=113.0
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC-----CCCCHHHH----HHhccccCCchH
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-----FTKEDGEF----LMRNGALPEERI 138 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~-----~~~~~~~~----~~~ig~v~q~~~ 138 (283)
..-.+++|.- +|++.+|+|.+||||||||++|++.+.|+ |.|.+...+- .....++. +...|+|.|+|.
T Consensus 20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~ 99 (258)
T COG4107 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR 99 (258)
T ss_pred cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence 3556788874 59999999999999999999999999998 9998887433 23333332 335899999875
Q ss_pred HHH----HhCCCCCCC-------hHHHH-HHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CC
Q 023354 139 RAV----ETGGCPHAA-------IREDI-SINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VS 202 (283)
Q Consensus 139 ~~i----~~~g~~~~~-------~~~~~-~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt 202 (283)
.-+ ..|+..... -..++ ....++|+++.+.. ..|-.... |||++||+.|||.|+. |.++++| ||
T Consensus 100 DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPT 179 (258)
T COG4107 100 DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT 179 (258)
T ss_pred ccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCC
Confidence 211 112111100 01122 24456787775543 23333333 9999999999999984 8888887 88
Q ss_pred CCCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 203 GGDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 203 ~g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
.|.+..- +.+.. --.|+++.++|.|.+++.|-...++
T Consensus 180 GGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred CCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccc
Confidence 8865321 11111 0468899999999999877555444
No 361
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.70 E-value=2.3e-17 Score=164.23 Aligned_cols=175 Identities=17% Similarity=0.025 Sum_probs=106.0
Q ss_pred ccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC-CCCCHHHHHHhccccC
Q 023354 58 PIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLMRNGALP 134 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~-~~~~~~~~~~~ig~v~ 134 (283)
.+++..|.. ...+.+++|... |++++|+|||||||||||++|+|+++|+ |+|.+.+... ...........+++++
T Consensus 7 ~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~ 84 (635)
T PRK11147 7 HGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVY 84 (635)
T ss_pred eeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHH
Confidence 344444432 357889999854 9999999999999999999999999987 9998764210 0000000011122222
Q ss_pred CchH-----------HH--HHh-CCCCC-----------------CChHHHHHHHHHHHHHccccccCCCcccC-CchHH
Q 023354 135 EERI-----------RA--VET-GGCPH-----------------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDN 182 (283)
Q Consensus 135 q~~~-----------~~--i~~-~g~~~-----------------~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~ 182 (283)
|... .+ +.. -.... .........+.+.|+.++.. .+..+.+ ||||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGek 162 (635)
T PRK11147 85 DFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWL 162 (635)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHH
Confidence 2110 00 000 00000 00000112344566666553 3666666 99999
Q ss_pred HHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCcccc-cCChH
Q 023354 183 LAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLASA-IGADL 236 (283)
Q Consensus 183 q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~~-~g~~~ 236 (283)
||++||++|+ +|.|+|+| ||++.|... .+..++ ..||+|++++.|.+.. .|...
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~ 239 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYD 239 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHH
Confidence 9999999998 58888888 999976432 111121 5799999999999864 45543
No 362
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=3.5e-17 Score=161.58 Aligned_cols=174 Identities=20% Similarity=0.195 Sum_probs=127.4
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC---C-CcEEEEeecCCCCCHHHHHHhccccCCchH-----
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~---~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (283)
+..+++++... +|++.||+||.||||||||++|+|.... . |.|.+++.. ......++..|||.|+..
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---CchhhhhheeEEEcccccccccc
Confidence 45678888775 4999999999999999999999998763 3 888888733 234567788999999864
Q ss_pred ---HHHHhC---CCCCC-ChHHHHHHHHHHHHHccccccCCCccc------CCchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354 139 ---RAVETG---GCPHA-AIREDISINLGPLEELSNLFKADLLLC------ESGGDNLAANFSRELA-DYIIYIID-VSG 203 (283)
Q Consensus 139 ---~~i~~~---g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~------eSgGq~q~~~ia~al~-~~~l~llD-pt~ 203 (283)
+.+.+. ..+.. ...+...++.+.+.++++..-.|.+++ -||||++|++||..++ +|.|+++| ||+
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTS 199 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTS 199 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCC
Confidence 112111 12221 234444577788999998888888886 2999999999999988 58888877 999
Q ss_pred CCCc-------------hhhcCCc------------ccccCEEEEEcCCcccccCChHHHHhHHHHhhc
Q 023354 204 GDKI-------------PRKGGPG------------ITQADLLVINKTDLASAIGADLAVMERDALRMR 247 (283)
Q Consensus 204 g~~l-------------~~~~~~~------------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~ 247 (283)
|.|- .++ +.+ +..-|+++++..|++++.|++.+... ......
T Consensus 200 GLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~-ff~~~G 266 (613)
T KOG0061|consen 200 GLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE-FFSSLG 266 (613)
T ss_pred CcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH-HHHhCC
Confidence 9752 122 222 36789999999999999998865443 444433
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=99.70 E-value=3.5e-17 Score=174.46 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=116.0
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC----CCcEEEEeecCCCCCHHHHHHhccccCCchH-----
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (283)
...++++++.. +|++++|+||||||||||||+|+|+++| +|+|.+.+.++.... .++.++|++|+..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 34688888885 5999999999999999999999999876 489999887764322 2467999999742
Q ss_pred ---HHHHhCC-CCC----------CChHHH---------H---------------HHHHHHHHHccccccCCCcc-----
Q 023354 139 ---RAVETGG-CPH----------AAIRED---------I---------------SINLGPLEELSNLFKADLLL----- 175 (283)
Q Consensus 139 ---~~i~~~g-~~~----------~~~~~~---------~---------------~~~~~~l~~l~~~~~~d~~i----- 175 (283)
+.+.++. |.. ...++. . ..+...|+.+++.+..+..+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 2222221 110 000110 0 01234667777765554433
Q ss_pred cC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCc------------ccccCEEEEEcCC
Q 023354 176 CE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPG------------ITQADLLVINKTD 227 (283)
Q Consensus 176 ~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~------------i~~ad~ivi~K~g 227 (283)
.. ||||+||+.||++++ +|.++++| |++|+|.. ...+.+ +..+|+|++++.|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 33 999999999999998 47777777 99997531 111111 2679999999999
Q ss_pred cccccCChHHHH
Q 023354 228 LASAIGADLAVM 239 (283)
Q Consensus 228 ~i~~~g~~~e~~ 239 (283)
++++.|+..++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999876654
No 364
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.70 E-value=6.4e-17 Score=173.59 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=104.7
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------H
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~ 139 (283)
.+.+++++|.. +|++++|+|||||||||||++|+|+++|. |+|.+.+ .++|++|++. +
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHH
Confidence 45789999985 59999999999999999999999999987 9998754 3788888863 2
Q ss_pred HHHhCCCCCCChHHHHHHHHH------HHHHccccccCCCcccC-----CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 140 AVETGGCPHAAIREDISINLG------PLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 140 ~i~~~g~~~~~~~~~~~~~~~------~l~~l~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
.+.++. +.. .+....+.+ .+..+. .+....+++ ||||+||++|||+++ ++.++|+| |+++.|
T Consensus 506 NI~~g~-~~~--~~~~~~~~~~~~L~~~l~~l~--~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 506 NIIFGL-SYD--EYRYTSVIKACQLEEDIALFP--EKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred HHHhcc-ccc--hHHHHHHHHHHhHHHHHHhcc--ccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 222332 111 111111111 222221 122223333 999999999999998 57777766 999865
Q ss_pred chh----------h--cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 207 IPR----------K--GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 207 l~~----------~--~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
... . .+.+ +..||+|++++.|.+...|+..+...
T Consensus 581 ~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 581 VVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 321 0 0111 25799999999999998888766653
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.69 E-value=1.6e-16 Score=159.35 Aligned_cols=179 Identities=16% Similarity=0.110 Sum_probs=112.1
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcc---cCC-CcEEEEeecCCCC--CH----
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFL---RDK-YSLAAVTNDIFTK--ED---- 123 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~---~~~-g~i~i~~~d~~~~--~~---- 123 (283)
+...+.++.|.. ...+++++|... |++++|+|+|||||||||++|+|.. .|. |+|.+...++... ..
T Consensus 178 I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 178 IHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred EEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 555666666643 348899999865 9999999999999999999999853 354 8998776653211 11
Q ss_pred --------HHHHHhccccCCchHHHHH------hC----CCCCCChHHHH----------------HHHHHHHHHcccc-
Q 023354 124 --------GEFLMRNGALPEERIRAVE------TG----GCPHAAIREDI----------------SINLGPLEELSNL- 168 (283)
Q Consensus 124 --------~~~~~~ig~v~q~~~~~i~------~~----g~~~~~~~~~~----------------~~~~~~l~~l~~~- 168 (283)
..+.+.+++++|.+..... .. +.+.....+.+ .++...|..++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~ 335 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTP 335 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence 0112346677665432111 00 00100000111 1222344444443
Q ss_pred ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEEc
Q 023354 169 FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVINK 225 (283)
Q Consensus 169 ~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K 225 (283)
...++.+.+ ||||+||++||++|+ +|.++|+| ||++.|... +.+.++ ..||+|++++
T Consensus 336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~ 415 (718)
T PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLH 415 (718)
T ss_pred HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 234556666 999999999999998 58888888 999976432 112221 5799999999
Q ss_pred CCccc-ccCCh
Q 023354 226 TDLAS-AIGAD 235 (283)
Q Consensus 226 ~g~i~-~~g~~ 235 (283)
.|++. +.|+.
T Consensus 416 ~g~i~~~~g~~ 426 (718)
T PLN03073 416 GQKLVTYKGDY 426 (718)
T ss_pred CCEEEEeCCCH
Confidence 99986 44543
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.69 E-value=6.8e-17 Score=173.72 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=105.0
Q ss_pred CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------
Q 023354 68 RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (283)
Q Consensus 68 ~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (283)
..+.+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+. +.++|++|++.
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHH
Confidence 345788999985 59999999999999999999999999987 988641 46899999863
Q ss_pred HHHHhCCCCCCChHHHHHHH------HHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 139 RAVETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 139 ~~i~~~g~~~~~~~~~~~~~------~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
+.+.++. +. ..+....+ .+.++.+ +.....+....+ ||||+||+++||+++ +|.++|+| |+++.|.
T Consensus 739 enI~~~~-~~--~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 739 GNILFFD-EE--DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHHcCC-hh--hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 2222221 11 11111111 1122222 111112222233 999999999999998 57777777 9998763
Q ss_pred hh-----------h-cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 208 PR-----------K-GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 208 ~~-----------~-~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.. . .+.+ +..||+|++++.|.+.+.|+..+.+.
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 21 0 0111 26799999999999998888776654
No 367
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.68 E-value=3.1e-16 Score=135.12 Aligned_cols=182 Identities=30% Similarity=0.408 Sum_probs=121.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHH
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~ 160 (283)
-.+++|+|++|||||||++.++..+....++.+..+++....+....+..|. . .....+||.||.....+ ..
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~----~-~~~l~~gcic~~~~~~~---~~ 93 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGA----P-AIQINTGKECHLDAHMV---AH 93 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCC----c-EEEEcCCCcccCChHHH---HH
Confidence 5789999999999999999999865433477788888753334444444442 1 12235678777543332 24
Q ss_pred HHHHccccccCCCcccCCchH-HHHHHHHHHhc-CCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHH
Q 023354 161 PLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 161 ~l~~l~~~~~~d~~i~eSgGq-~q~~~ia~al~-~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
.+..+.. ..+|.++.|+.|- ..+..+ .+. +..+.++|++.+++........+..++.+++||+|++.......+.
T Consensus 94 ~l~~~~~-~~~d~IiIEt~G~l~~~~~~--~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~ 170 (207)
T TIGR00073 94 ALEDLPL-DDIDLLFIENVGNLVCPADF--DLGEHMRVVLLSVTEGDDKPLKYPGMFKEADLIVINKADLAEAVGFDVEK 170 (207)
T ss_pred HHHHhcc-CCCCEEEEecCCCcCCCccc--ccccCeEEEEEecCcccchhhhhHhHHhhCCEEEEEHHHccccchhhHHH
Confidence 4555433 3569999997771 111111 122 3457889988776544433445678999999999997542223344
Q ss_pred HhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354 239 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 239 ~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~ 273 (283)
+.+.+.+.++..|++.+|++++.|++++++++...
T Consensus 171 ~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 171 MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 55556666778999999999999999999999764
No 368
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=99.68 E-value=6.5e-17 Score=147.54 Aligned_cols=177 Identities=23% Similarity=0.267 Sum_probs=128.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHH-HhCCCCCCChHHHHHHHHH
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ETGGCPHAAIREDISINLG 160 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i-~~~g~~~~~~~~~~~~~~~ 160 (283)
+++.|.|+.|||||||||.|+.... .-+++++.|+++...... -+.+......++ .++||.||++++++-....
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~-g~kiAVIVNEfGEvgID~----~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~ 76 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD-GKKIAVIVNEFGEVGIDG----GALLSDTGEEVVELTNGCICCTVRDDLLPALE 76 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC-CCcEEEEEecCccccccC----CCccccCCccEEEeCCceEEEeccchhHHHHH
Confidence 5789999999999999999988543 458999999998754210 011111111222 3689999999888766666
Q ss_pred HHHHccccccCCCcccCCchHHHHHHHHHHhc-----------CCcEEEEeCCCCCC----chhhcCCcccccCEEEEEc
Q 023354 161 PLEELSNLFKADLLLCESGGDNLAANFSRELA-----------DYIIYIIDVSGGDK----IPRKGGPGITQADLLVINK 225 (283)
Q Consensus 161 ~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-----------~~~l~llDpt~g~~----l~~~~~~~i~~ad~ivi~K 225 (283)
.|.. ++..+|++++|+.|-.-+..++.++. +++|.|+|+..... +......|+.+||+|++||
T Consensus 77 ~L~~--~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK 154 (323)
T COG0523 77 RLLR--RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNK 154 (323)
T ss_pred HHHh--ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEec
Confidence 6655 34559999999999877666665542 36899999877532 3344566889999999999
Q ss_pred CCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHH
Q 023354 226 TDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN 268 (283)
Q Consensus 226 ~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~ 268 (283)
.|++... ..+.++..+.+.+|.++++..+. ......+++.
T Consensus 155 ~Dlv~~~--~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 155 TDLVDAE--ELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred ccCCCHH--HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 9999874 47788889999999999999886 4444444443
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.67 E-value=2.3e-16 Score=152.53 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=101.8
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
..+..| ...+.+.++++.- +|++|||+|+||||||||||+|+|.+.|+ |.|....+ .+++|++|+
T Consensus 8 ~ls~~~--g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~l~Q~ 74 (530)
T COG0488 8 NLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGYLSQE 74 (530)
T ss_pred eeEEee--CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEEeCCC
Confidence 344444 3445778888874 59999999999999999999999999887 88876543 246666665
Q ss_pred hH--------HHHHhCCCCCCChHHH-------------------------------HHHHHHHHHHccccccCCCcccC
Q 023354 137 RI--------RAVETGGCPHAAIRED-------------------------------ISINLGPLEELSNLFKADLLLCE 177 (283)
Q Consensus 137 ~~--------~~i~~~g~~~~~~~~~-------------------------------~~~~~~~l~~l~~~~~~d~~i~e 177 (283)
+. .++..+.......... -.++...|..++.... +.++.+
T Consensus 75 ~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~ 153 (530)
T COG0488 75 PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS 153 (530)
T ss_pred CCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh
Confidence 42 1111110000000000 0122234444544444 777777
Q ss_pred -CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCcccc
Q 023354 178 -SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLASA 231 (283)
Q Consensus 178 -SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~~ 231 (283)
||||+.|+++|++|. +|-++|+| ||+.+|+.. .+..++ ..|.+|+-+..|.+..
T Consensus 154 LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~ 230 (530)
T COG0488 154 LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTP 230 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeE
Confidence 999999999999998 48888888 999877532 111121 5677777777776644
No 370
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.67 E-value=2.3e-16 Score=137.92 Aligned_cols=188 Identities=26% Similarity=0.319 Sum_probs=118.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChH-----
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR----- 152 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~----- 152 (283)
.+..++||.||+|||||||+..|...+... -+|.+...|+.... .=|.+..+..++......+..+++
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~------tGGAlLGDRiRM~~~~~d~~vfIRS~atR 100 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF------TGGALLGDRIRMQELSRDPGVFIRSMATR 100 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC------C---SS--GGGCHHHHTSTTEEEEEE---
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC------CCCcccccHHHhcCcCCCCCEEEeecCcC
Confidence 356799999999999999999999988766 58999999886421 123444555555544333333221
Q ss_pred ----HHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCc
Q 023354 153 ----EDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL 228 (283)
Q Consensus 153 ----~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~ 228 (283)
.....+.+.+.-+ ...++|.++.|+.|.-|--.-...++|..++++-|-.|++++....-.+++||.+|+||.|+
T Consensus 101 G~lGGls~~t~~~v~ll-~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vVNKaD~ 179 (266)
T PF03308_consen 101 GSLGGLSRATRDAVRLL-DAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVVNKADR 179 (266)
T ss_dssp SSHHHHHHHHHHHHHHH-HHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEEE--SH
T ss_pred CCCCCccHhHHHHHHHH-HHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEEeCCCh
Confidence 1111222333322 45689999999887766654445678999999999999999876666789999999999996
Q ss_pred ccccCChHHHHhHHHHhhcC------CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 229 ASAIGADLAVMERDALRMRD------GGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 229 i~~~g~~~e~~~~~~~~~~~------~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
-.+.....+ +. ..+.... ..|++.+|+.++.|+++|++.|.+...
T Consensus 180 ~gA~~~~~~-l~-~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 180 PGADRTVRD-LR-SMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp HHHHHHHHH-HH-HHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HH-HHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 554221211 11 2222222 247899999999999999999998654
No 371
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=2.3e-16 Score=164.12 Aligned_cols=171 Identities=20% Similarity=0.211 Sum_probs=114.4
Q ss_pred cccccCCCCCCC-CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 55 SHEPIYSPGYFS-RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
+...+.++.... +..+.+++++|..+ |+.++|+|+.||||||||.+|+|.++.. |.+.+.+. ++
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------ia 585 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VA 585 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EE
Confidence 444444444332 34458999999855 9999999999999999999999999876 98887663 78
Q ss_pred ccCCchHHH------HHhCCCCCCChHHHHHHHHHHH---HHccc-cccCCCcccC-----CchHHHHHHHHHHhcC-Cc
Q 023354 132 ALPEERIRA------VETGGCPHAAIREDISINLGPL---EELSN-LFKADLLLCE-----SGGDNLAANFSRELAD-YI 195 (283)
Q Consensus 132 ~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~~l---~~l~~-~~~~d~~i~e-----SgGq~q~~~ia~al~~-~~ 195 (283)
|+||.+..+ +.+-|.+.. ++....+.++. .++.. ..+-...++| |||||||+++|||+-+ ..
T Consensus 586 Yv~Q~pWI~ngTvreNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ad 663 (1381)
T KOG0054|consen 586 YVPQQPWIQNGTVRENILFGSPYD--EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDAD 663 (1381)
T ss_pred EeccccHhhCCcHHHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCC
Confidence 999988522 222233322 22222333321 11111 1233444566 9999999999999984 55
Q ss_pred EEEEe-CCCCCCc------hhhc------CC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354 196 IYIID-VSGGDKI------PRKG------GP----------GITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 196 l~llD-pt~g~~l------~~~~------~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++| |.+..|- -++. ++ -++.||.|+++|.|++.+.|+-.+.++
T Consensus 664 IYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 664 IYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred EEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 55555 9886431 1110 01 137899999999999999999887774
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.2e-16 Score=130.25 Aligned_cols=133 Identities=19% Similarity=0.192 Sum_probs=94.9
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH--HHHHHhccccCCchH-----HH
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED--GEFLMRNGALPEERI-----RA 140 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~--~~~~~~ig~v~q~~~-----~~ 140 (283)
..+.+.+|.-. |+.+.|.|||||||||||++|+|+++|+ |+|.+.+..+..... .+.+--+|-.+.-.. +.
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~EN 95 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALEN 95 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHH
Confidence 45678888854 9999999999999999999999999998 999998877765432 122222332221110 11
Q ss_pred H----HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCch
Q 023354 141 V----ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIP 208 (283)
Q Consensus 141 i----~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~ 208 (283)
+ .+.++ .....+.++++.+++....|.++.. |.||++|+++||-.+. ..+.++| |+++.|..
T Consensus 96 L~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~ 164 (209)
T COG4133 96 LHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE 164 (209)
T ss_pred HHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHH
Confidence 1 12222 0112456788999999999999988 9999999999998774 6777777 99886643
No 373
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.9e-16 Score=127.99 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=89.4
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec----CCCCCHHH----HHHhccccCCchH
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND----IFTKEDGE----FLMRNGALPEERI 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d----~~~~~~~~----~~~~ig~v~q~~~ 138 (283)
-+.+.+++|+.+ ||++++-||+||||||||++|.+-|.|+ |+|.+--.. +.+..+++ +++.+|||.|.--
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 367889999866 9999999999999999999999999988 998775432 22333433 2446999988521
Q ss_pred --------HHHHhCCCCCCChHHHH-HHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354 139 --------RAVETGGCPHAAIREDI-SINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (283)
Q Consensus 139 --------~~i~~~g~~~~~~~~~~-~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~ 205 (283)
+++.-+.......++.. ..+...|..+.... ...+.... |||++||+.|||.++ |..|+++| ||...
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 11110000000011111 23444566665443 23444555 999999999999987 65555555 98865
Q ss_pred C
Q 023354 206 K 206 (283)
Q Consensus 206 ~ 206 (283)
|
T Consensus 184 D 184 (235)
T COG4778 184 D 184 (235)
T ss_pred c
Confidence 4
No 374
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.64 E-value=3.3e-15 Score=132.35 Aligned_cols=192 Identities=23% Similarity=0.249 Sum_probs=132.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChH-----
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR----- 152 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~----- 152 (283)
.+..++||.|++|||||||+..|...+...| +|.++..|+.... .-|.+..+..++..+...+..+++
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~------TGGsiLGDRiRM~~~~~~~~vFiRs~~sr 122 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF------TGGSILGDRIRMQRLAVDPGVFIRSSPSR 122 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC------CCccccccHhhHHhhccCCCeEEeecCCC
Confidence 3456999999999999999999999887765 6999999987532 234444555555544333322211
Q ss_pred ----HHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCc
Q 023354 153 ----EDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL 228 (283)
Q Consensus 153 ----~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~ 228 (283)
..-....+.+.-| ...++|.+++|+.|--|--.-...++|..++|+=|..|++++......++++|++++||.|+
T Consensus 123 G~lGGlS~at~~~i~~l-dAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKaD~ 201 (323)
T COG1703 123 GTLGGLSRATREAIKLL-DAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKADR 201 (323)
T ss_pred ccchhhhHHHHHHHHHH-HhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEeccCh
Confidence 1111223333333 56689999999888777655555678888999989999999887667789999999999996
Q ss_pred ccccCChHHHHhHHHHh-----hcCC-CCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 229 ASAIGADLAVMERDALR-----MRDG-GPFIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 229 i~~~g~~~e~~~~~~~~-----~~~~-~~i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
-.+.....++....-+. ...| .|++.+|+.+|+|+++|++.+...++..
T Consensus 202 ~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 202 KGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred hhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 54432222222211111 1223 4678999999999999999999877543
No 375
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.64 E-value=5.4e-16 Score=141.60 Aligned_cols=144 Identities=15% Similarity=0.024 Sum_probs=102.6
Q ss_pred ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
-++++++-+.|++.. --+..+|+..+ |++|.|+|.||||||||+++|+|+++|+ |+|.++++.+......+.|+-++
T Consensus 322 ~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 322 TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence 467788888887754 45677788755 9999999999999999999999999998 99999999998777777888788
Q ss_pred ccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccc---cCCCcccC---CchHHHHHHHHHHhcC-CcEEEEeC
Q 023354 132 ALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF---KADLLLCE---SGGDNLAANFSRELAD-YIIYIIDV 201 (283)
Q Consensus 132 ~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e---SgGq~q~~~ia~al~~-~~l~llDp 201 (283)
.|+.+...+-.+-+-......+.+ ...|+.+...+ ..|..+.. |.|||+|+++..|++. ..|+|+|.
T Consensus 401 avFsDyhLF~~ll~~e~~as~q~i---~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DE 474 (546)
T COG4615 401 AVFSDYHLFDQLLGPEGKASPQLI---EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDE 474 (546)
T ss_pred HHhhhHhhhHhhhCCccCCChHHH---HHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeeh
Confidence 777765444443222221122222 33444443333 22322222 9999999999999884 66777773
No 376
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.63 E-value=1.5e-16 Score=134.05 Aligned_cols=163 Identities=26% Similarity=0.365 Sum_probs=109.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCC-HHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHH
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~ 160 (283)
+++.|.|+.||||||||+.++.......++.++.++++... |.++.+..|.. ..-..+||.||+.+.++. .
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~-----v~~l~~gcicc~~~~~~~---~ 72 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVP-----VVELNNGCICCTLRDDLV---E 72 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-E-----EEEECTTTESS-TTS-HH---H
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceE-----EEEecCCCcccccHHHHH---H
Confidence 47899999999999999999983334479999999998654 55555544321 011257899998665553 4
Q ss_pred HHHHccccc--cCCCcccCCchHHHHHHHH---HHh-----cCCcEEEEeCCCC---CCchhhcCCcccccCEEEEEcCC
Q 023354 161 PLEELSNLF--KADLLLCESGGDNLAANFS---REL-----ADYIIYIIDVSGG---DKIPRKGGPGITQADLLVINKTD 227 (283)
Q Consensus 161 ~l~~l~~~~--~~d~~i~eSgGq~q~~~ia---~al-----~~~~l~llDpt~g---~~l~~~~~~~i~~ad~ivi~K~g 227 (283)
.+..+.... .+|++++|+.|......++ ..+ .+..|.++|+.+. .+.......++++||.|++||+|
T Consensus 73 ~l~~l~~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D 152 (178)
T PF02492_consen 73 ALRRLLREYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKID 152 (178)
T ss_dssp HHHHHCCCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GG
T ss_pred HHHHHHHhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccc
Confidence 556665555 7999999977766555542 111 2478999999664 33334445678999999999999
Q ss_pred cccccCChHHHHhHHHHhhcCCCCeE
Q 023354 228 LASAIGADLAVMERDALRMRDGGPFI 253 (283)
Q Consensus 228 ~i~~~g~~~e~~~~~~~~~~~~~~i~ 253 (283)
++... ...+.+.+.+++.+|.++++
T Consensus 153 ~~~~~-~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 153 LVSDE-QKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp GHHHH---HHHHHHHHHHH-TTSEEE
T ss_pred cCChh-hHHHHHHHHHHHHCCCCEEe
Confidence 99874 23477888899999999886
No 377
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=1.5e-15 Score=122.16 Aligned_cols=134 Identities=16% Similarity=0.083 Sum_probs=98.8
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC----CCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCC
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG 145 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g 145 (283)
.+.+++|+. +|+++.|+||+|||||||+.-+.|.+.+ +|++.+.+.++...+.. .+.+|+++|++..+-.+..
T Consensus 17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qRq~GiLFQD~lLFphlsV 94 (213)
T COG4136 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSV 94 (213)
T ss_pred EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hhheeeeeccccccccccc
Confidence 456788885 5999999999999999999999998875 38888888887765543 4789999999764432211
Q ss_pred CCC------CChHH--HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 146 CPH------AAIRE--DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 146 ~~~------~~~~~--~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
..+ .+++. ....+..+|++.++...++..... ||||+-|+++-|+|. .|..+++| |.+..|
T Consensus 95 g~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD 166 (213)
T COG4136 95 GQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166 (213)
T ss_pred ccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHH
Confidence 100 11222 222455688888877777666655 999999999999987 68888888 877644
No 378
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.60 E-value=6.6e-16 Score=134.96 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=52.1
Q ss_pred HHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC-C--cEEEEe-CCCCCCchh------------hcCCc------
Q 023354 159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD-Y--IIYIID-VSGGDKIPR------------KGGPG------ 214 (283)
Q Consensus 159 ~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~-~--~l~llD-pt~g~~l~~------------~~~~~------ 214 (283)
.+.|+.+.+.. ..+..+.+ |+||+||+.+|++++. | .++++| |+++.|... +.+.+
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 45677776655 35666666 9999999999999984 5 477777 999865321 11111
Q ss_pred ----ccccCEEEEE------cCCcccccC
Q 023354 215 ----ITQADLLVIN------KTDLASAIG 233 (283)
Q Consensus 215 ----i~~ad~ivi~------K~g~i~~~g 233 (283)
+.+||+++++ +.|+++++|
T Consensus 198 ~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 2678999999 777776643
No 379
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.59 E-value=1.5e-15 Score=146.89 Aligned_cols=141 Identities=18% Similarity=0.148 Sum_probs=99.2
Q ss_pred CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.....+.+++++|.+. ...+.+.+|.. +|++|+|+||||+|||||||+|+|.+.|. |.|.+-.. -+
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 3447778888888766 56778899986 59999999999999999999999988887 87765332 24
Q ss_pred ccccCCchHHHH------H--hCCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC-CcEEE
Q 023354 130 NGALPEERIRAV------E--TGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD-YIIYI 198 (283)
Q Consensus 130 ig~v~q~~~~~i------~--~~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~-~~l~l 198 (283)
+||+.|+..... + ...++... ...+...|..|.... ....++.. ||||+.|+.+|+.+.. |.|+|
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~----e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi 462 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGD----EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL 462 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCcccc----HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence 777777652211 0 00111000 123445667665543 23445554 9999999999999885 88888
Q ss_pred Ee-CCCCCCch
Q 023354 199 ID-VSGGDKIP 208 (283)
Q Consensus 199 lD-pt~g~~l~ 208 (283)
+| ||+.+|+.
T Consensus 463 LDEPTNhLDi~ 473 (530)
T COG0488 463 LDEPTNHLDIE 473 (530)
T ss_pred EcCCCccCCHH
Confidence 88 99988764
No 380
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=99.56 E-value=3e-14 Score=131.55 Aligned_cols=181 Identities=21% Similarity=0.242 Sum_probs=123.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-HHHHHHhccccCCchHHHH-HhCCCCCCChHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAV-ETGGCPHAAIREDIS 156 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~i-~~~g~~~~~~~~~~~ 156 (283)
+-+++.|.|+.|||||||||.++.. +. .++.++.++++... |..+.+..+........++ ..+||.||+.+.++.
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~ 80 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFI 80 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence 3478999999999999999999874 33 58999999998764 5555554332110001122 368999999887765
Q ss_pred HHHHHHHHcc-ccccCCCcccCCchHHHHHHHHHHhc----------CCcEEEEeCCCCCC------c------------
Q 023354 157 INLGPLEELS-NLFKADLLLCESGGDNLAANFSRELA----------DYIIYIIDVSGGDK------I------------ 207 (283)
Q Consensus 157 ~~~~~l~~l~-~~~~~d~~i~eSgGq~q~~~ia~al~----------~~~l~llDpt~g~~------l------------ 207 (283)
. .|..+. ....+|++++|+.|......++..+. +.+|.++|+.+... .
T Consensus 81 ~---~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~ 157 (341)
T TIGR02475 81 P---TMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDN 157 (341)
T ss_pred H---HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccc
Confidence 4 344432 24579999999999888888887763 35789999875421 0
Q ss_pred -------hhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC-CCeEEEEeccCCCHHHHHH
Q 023354 208 -------PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDG-GPFIFAQVKHGLGVEEIVN 268 (283)
Q Consensus 208 -------~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~-~~i~~isa~~g~gi~~l~~ 268 (283)
......|+.+||+|++||.|++.+ ...+.+.+.+...++. ++++.++. .......|++
T Consensus 158 ~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~--~~l~~~~~~l~~~~~~~a~i~~~~~-~~v~~~~ll~ 223 (341)
T TIGR02475 158 LDHETPLEELFEDQLACADLVILNKADLLDA--AGLARVRAEIAAELPRAVKIVEASH-GEVDARVLLG 223 (341)
T ss_pred ccccchHHHHHHHHHHhCCEEEEeccccCCH--HHHHHHHHHHHHhCCCCCEEEEccc-CCCCHHHHhC
Confidence 011134679999999999999876 4566667777776764 46766542 3344555544
No 381
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.55 E-value=8.1e-15 Score=138.33 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=101.0
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
++.+.+.+++|+|.++. ......+|... +..++++||||+|||||||+++|.+.|. |.+..-.....
T Consensus 387 ~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~---------- 455 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKL---------- 455 (614)
T ss_pred CCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccc----------
Confidence 56788999999998877 66788999866 9999999999999999999999999997 87764333221
Q ss_pred ccccCCchHHHHH---------hCCCCCCChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354 130 NGALPEERIRAVE---------TGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (283)
Q Consensus 130 ig~v~q~~~~~i~---------~~g~~~~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~~l~ 197 (283)
++..|...+..+ ..-++. ....+.+...|..+++... .+.++.. |+||+.||.+|+... +|.++
T Consensus 456 -~~y~Qh~~e~ldl~~s~le~~~~~~~~---~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL 531 (614)
T KOG0927|consen 456 -PRYNQHLAEQLDLDKSSLEFMMPKFPD---EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL 531 (614)
T ss_pred -hhhhhhhHhhcCcchhHHHHHHHhccc---cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence 111222111111 111111 1223345567888888754 4555555 999999999999877 58888
Q ss_pred EEe-CCCCCCch
Q 023354 198 IID-VSGGDKIP 208 (283)
Q Consensus 198 llD-pt~g~~l~ 208 (283)
||| ||++.|+.
T Consensus 532 lLDEPtnhLDi~ 543 (614)
T KOG0927|consen 532 LLDEPTNHLDIE 543 (614)
T ss_pred EecCCCcCCCch
Confidence 888 99998764
No 382
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=99.54 E-value=1.8e-14 Score=131.87 Aligned_cols=167 Identities=19% Similarity=0.252 Sum_probs=117.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCC-HHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~ 158 (283)
+-+++.|.|+.|||||||||.|+.. ....++.++.++++... |..+....+. ...-..+||.||+.+.++...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~-~~~~riaVi~NEfG~v~iD~~ll~~~~~-----~v~eL~~GCiCCs~~~~l~~~ 76 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRAT-----QIKTLTNGCICCSRSNELEDA 76 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc-ccCCcccccccCcCCccccHHHHhCcCc-----eEEEECCCEEEEccCchHHHH
Confidence 4578999999999999999999864 22358999999998653 4444432110 011235799999988776643
Q ss_pred HHHH-HHccc-cccCCCcccCCchHHHHHHHHHHhc-----------CCcEEEEeCCCCCCchh---hcCCcccccCEEE
Q 023354 159 LGPL-EELSN-LFKADLLLCESGGDNLAANFSRELA-----------DYIIYIIDVSGGDKIPR---KGGPGITQADLLV 222 (283)
Q Consensus 159 ~~~l-~~l~~-~~~~d~~i~eSgGq~q~~~ia~al~-----------~~~l~llDpt~g~~l~~---~~~~~i~~ad~iv 222 (283)
+..+ ..+.. ...+|++++|+.|......++..+. +.+|.++|+.++..... ....|+.+||+|+
T Consensus 77 l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Iv 156 (318)
T PRK11537 77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 156 (318)
T ss_pred HHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEE
Confidence 3333 22221 1368999999999887777776651 46899999887643222 1234689999999
Q ss_pred EEcCCcccccCChHHHHhHHHHhhcCCCCeEEEE
Q 023354 223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 256 (283)
Q Consensus 223 i~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~is 256 (283)
+||.|++.+ .+.+.+.+...+|.++++.++
T Consensus 157 lnK~Dl~~~----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 157 LTKTDVAGE----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred EeccccCCH----HHHHHHHHHHhCCCCEEEEec
Confidence 999998864 256777888899999998765
No 383
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.54 E-value=3.9e-15 Score=127.44 Aligned_cols=113 Identities=15% Similarity=0.066 Sum_probs=73.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC----------CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK----------YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~----------g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~ 149 (283)
+| +++|+||||||||||+++|++++.+. +.+.+.+.+... ....+.++++||++..+ ++..
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~--~~~~--- 92 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR--YSII--- 92 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc--eeEE---
Confidence 36 99999999999999999999987543 234443433322 12346799999987544 1110
Q ss_pred ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc----C-CcEEEEe-CCCCCCch
Q 023354 150 AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA----D-YIIYIID-VSGGDKIP 208 (283)
Q Consensus 150 ~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~----~-~~l~llD-pt~g~~l~ 208 (283)
.. ..+.+.++. ....+..+.+ |+||+||+++|++++ . +.++++| |+++.+..
T Consensus 93 -~~---~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~ 151 (197)
T cd03278 93 -SQ---GDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA 151 (197)
T ss_pred -eh---hhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH
Confidence 11 122334443 2334555555 999999999999875 3 4677777 99987654
No 384
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.51 E-value=1.3e-13 Score=125.41 Aligned_cols=200 Identities=21% Similarity=0.188 Sum_probs=119.9
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-HHHHH---HhccccCCchHHHHH-h
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFL---MRNGALPEERIRAVE-T 143 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-~~~~~---~~ig~v~q~~~~~i~-~ 143 (283)
.+.++.+.. ++.+++|+|++|||||||++.|+..+... .++.++..|+.... ...+. .++.....++..++. +
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSM 102 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeec
Confidence 455555543 48999999999999999999999987765 68888888875421 11110 011111111110111 1
Q ss_pred CCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEE
Q 023354 144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVI 223 (283)
Q Consensus 144 ~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi 223 (283)
++... .........+.++.+ ....+|.+++|+.|-.+...-....+|..+++.+|..+.++..........++.+++
T Consensus 103 ~~~~~--~~~~~~~~~~~~~~l-~~~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~ 179 (300)
T TIGR00750 103 PTRGH--LGGLSQATRELILLL-DAAGYDVIIVETVGVGQSEVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVV 179 (300)
T ss_pred Ccccc--ccchhHHHHHHHHHH-HhCCCCEEEEeCCCCchhhhHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEE
Confidence 11000 000111222333333 346899999997776655444445567777777788887765543334577899999
Q ss_pred EcCCcccccCChHHHHh----HHHH---hh--cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 224 NKTDLASAIGADLAVME----RDAL---RM--RDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 224 ~K~g~i~~~g~~~e~~~----~~~~---~~--~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
||.|+..... ..... ..+. .. ....+++.+|++++.|++++++++...+.
T Consensus 180 NK~Dl~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 180 NKADGEGATN--VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred EcccccchhH--HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 9999875522 11111 1111 11 11246899999999999999999988654
No 385
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.47 E-value=3.7e-14 Score=122.77 Aligned_cols=132 Identities=17% Similarity=0.015 Sum_probs=71.0
Q ss_pred ccccccC--CCcEEEEEcCCCCcHHHHHHHHHhcc-cCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCC
Q 023354 73 LSRNFNE--RAFTVGIGGPVGTGKTALMLALCKFL-RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (283)
Q Consensus 73 ~~~~~~~--~g~~v~ilG~nGsGKSTLl~~L~g~~-~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~ 148 (283)
+.++|.. +|++++|+||||||||||+++|++.+ .+. +..... .........+....+++++|.............
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~g 96 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRG 96 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEEEEEEEECCeEEEEEEecC
Confidence 4445542 38899999999999999999999643 222 222211 000111112223457777766421111111111
Q ss_pred CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-----------CCcEEEEe-CCCCCCc
Q 023354 149 AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-----------DYIIYIID-VSGGDKI 207 (283)
Q Consensus 149 ~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-----------~~~l~llD-pt~g~~l 207 (283)
.. .+.+... ..+.........+..+.. |+||+||+++|++++ +|.++++| |+++.+.
T Consensus 97 l~-~~~~~~~-~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~ 166 (213)
T cd03279 97 LD-YDQFTRI-VLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDP 166 (213)
T ss_pred CC-HHHHHHh-hhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCH
Confidence 11 1111110 012222122333555555 999999999999996 34577777 9998654
No 386
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.47 E-value=2.1e-13 Score=121.45 Aligned_cols=77 Identities=23% Similarity=0.294 Sum_probs=54.3
Q ss_pred HHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchhh------------cCCc----
Q 023354 158 NLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPRK------------GGPG---- 214 (283)
Q Consensus 158 ~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~~------------~~~~---- 214 (283)
..+.|+.+++.+ ..+..+.+ |+||+||+.+|++++. +.++++| |+++.+.... .+.+
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIii 228 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVI 228 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 345666676655 35666666 9999999999999985 5788887 9999653211 1111
Q ss_pred ------ccccCEEEEE------cCCcccccCC
Q 023354 215 ------ITQADLLVIN------KTDLASAIGA 234 (283)
Q Consensus 215 ------i~~ad~ivi~------K~g~i~~~g~ 234 (283)
+..||+++.+ +.|++++.|+
T Consensus 229 tH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 229 EHNLDVIKCADWIIDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred eCCHHHHHhCCEEEEecCCcCCCCCEEEEeCC
Confidence 2578999999 7888887664
No 387
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=99.47 E-value=1.6e-13 Score=121.20 Aligned_cols=177 Identities=23% Similarity=0.257 Sum_probs=123.1
Q ss_pred CcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHH--HHHh--ccccCCchHHHHH-hCC
Q 023354 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGE--FLMR--NGALPEERIRAVE-TGG 145 (283)
Q Consensus 71 ~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~--~~~~--ig~v~q~~~~~i~-~~g 145 (283)
.........+-++..|.|+.|||||||||.|+.- +...+|+++-++++...+-+ +... .|-+. .+.+. -+|
T Consensus 47 ~~~~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~-~hgKRIAVIlNEfGes~die~sl~~~~~gg~ly---Eewv~L~NG 122 (391)
T KOG2743|consen 47 VVTKSSLGARIPVTIITGYLGAGKTTLLNYILTG-QHGKRIAVILNEFGESSDIEKSLAVSQEGGELY---EEWVELRNG 122 (391)
T ss_pred cccccCCCCccceEEEEecccCChHHHHHHHHcc-CCCceEEEEhhhcccchhhhHHHHhccccchHH---HHHHHhcCC
Confidence 3455666677889999999999999999999762 12258999999998644322 1111 11111 13343 579
Q ss_pred CCCCChHHHHHHHHHHHHHcc-ccccCCCcccCCchHHHHHHHHHHh-----------cCCcEEEEeCCCCCCc----h-
Q 023354 146 CPHAAIREDISINLGPLEELS-NLFKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKI----P- 208 (283)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~l~-~~~~~d~~i~eSgGq~q~~~ia~al-----------~~~~l~llDpt~g~~l----~- 208 (283)
|.||+++.+.-+ +++++. .+..+|.++.|+.|-.-+..+|..+ +|.+|.++|....+.. .
T Consensus 123 ClCCtVk~~gvr---aie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~ 199 (391)
T KOG2743|consen 123 CLCCTVKDNGVR---AIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKP 199 (391)
T ss_pred eEEEEecchHHH---HHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCc
Confidence 999998877644 344433 4457899999999989888888765 2478999998765321 1
Q ss_pred ----hhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEE
Q 023354 209 ----RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 256 (283)
Q Consensus 209 ----~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~is 256 (283)
.+...++.+||+|++||.|++.. +....+.+.+++.+.-++++++.
T Consensus 200 ~g~i~EA~~QiA~AD~II~NKtDli~~--e~~~~l~q~I~~INslA~m~~Tk 249 (391)
T KOG2743|consen 200 DGLINEATRQIALADRIIMNKTDLVSE--EEVKKLRQRIRSINSLAQMIETK 249 (391)
T ss_pred ccchHHHHHHHhhhheeeeccccccCH--HHHHHHHHHHHHhhhHHHhhhhh
Confidence 11223679999999999999987 56666777788877777766543
No 388
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.45 E-value=7.8e-13 Score=125.87 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=115.1
Q ss_pred CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhccccCCchH---------
Q 023354 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------- 138 (283)
Q Consensus 71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~--------- 138 (283)
.+.+++|.-+ ||++||.|-.|||+|-|+++|.|..++. |+|.+++.++...++. .+...++|||.+.-
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 3567788854 9999999999999999999999977766 9999999988766655 45557999998752
Q ss_pred --HHHHhC---CCC---CCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 139 --RAVETG---GCP---HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 139 --~~i~~~---g~~---~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
..+.+. ... ....+.....+......+..+. ..+..+.. |||.+|++.||+.|+ +|.|+++| ||.|-|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 111111 111 1111222223445566665554 34566666 999999999999998 68888888 999966
Q ss_pred chhhc------------CCc-----------ccccCEEEEEcCCccccc
Q 023354 207 IPRKG------------GPG-----------ITQADLLVINKTDLASAI 232 (283)
Q Consensus 207 l~~~~------------~~~-----------i~~ad~ivi~K~g~i~~~ 232 (283)
+-.+. +.. +..||||++++.|++...
T Consensus 434 VGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 434 VGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 43221 111 378999999999999874
No 389
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.43 E-value=2.6e-13 Score=119.44 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=27.4
Q ss_pred cccC-CchHHHHHHHHHHhc----C-CcEEEEe-CCCCCCch
Q 023354 174 LLCE-SGGDNLAANFSRELA----D-YIIYIID-VSGGDKIP 208 (283)
Q Consensus 174 ~i~e-SgGq~q~~~ia~al~----~-~~l~llD-pt~g~~l~ 208 (283)
.+.+ |+||+||+++|++++ + +.++++| |+++.+..
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~ 196 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQ 196 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHH
Confidence 3344 999999999999995 3 6677777 99987653
No 390
>COG1159 Era GTPase [General function prediction only]
Probab=99.41 E-value=9.8e-13 Score=116.81 Aligned_cols=162 Identities=21% Similarity=0.176 Sum_probs=104.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCC--chHHHHHhCCCCCCChHHHHHHH
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE--ERIRAVETGGCPHAAIREDISIN 158 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q--~~~~~i~~~g~~~~~~~~~~~~~ 158 (283)
.-+|+|+|++++|||||+|.|+|. ++++....+.+++. +-.|.+.. ..+.+++|+|..... .
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~-----KisIvS~k~QTTR~----~I~GI~t~~~~QiIfvDTPGih~pk--~----- 69 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQ-----KISIVSPKPQTTRN----RIRGIVTTDNAQIIFVDTPGIHKPK--H----- 69 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcC-----ceEeecCCcchhhh----heeEEEEcCCceEEEEeCCCCCCcc--h-----
Confidence 347999999999999999999996 78888777766432 22344432 234577888874431 1
Q ss_pred HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchh----hcCCcccccCEEEEEcCCcccccCC
Q 023354 159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~----~~~~~i~~ad~ivi~K~g~i~~~g~ 234 (283)
.|.++. .+.+.-+..-+|.+++++|++.+..... +..........+++||.|++...-
T Consensus 70 --~l~~~m---------------~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~- 131 (298)
T COG1159 70 --ALGELM---------------NKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKT- 131 (298)
T ss_pred --HHHHHH---------------HHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHH-
Confidence 111110 1112222223468899999776421111 100112456799999999987621
Q ss_pred hHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 235 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 235 ~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
....+.+......+..+++++||++|.+++.|.+.+...+++
T Consensus 132 ~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 132 VLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 123445566667777899999999999999999999987643
No 391
>PRK15494 era GTPase Era; Provisional
Probab=99.40 E-value=1.7e-12 Score=119.99 Aligned_cols=194 Identities=15% Similarity=0.122 Sum_probs=113.1
Q ss_pred ccCCCCCCCccccccCCCCCCCCCCCCcccccccCC-Cc-------EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEee
Q 023354 45 YHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AF-------TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN 116 (283)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-------~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~ 116 (283)
+..++...|.+++..+.+.|+ ...+++....+..+ |+ .++|+|++|+|||||+|.|+|. ++.+...
T Consensus 9 ~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~-----k~~ivs~ 82 (339)
T PRK15494 9 FAYREEFKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE-----KLSIVTP 82 (339)
T ss_pred cccchhhCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC-----ceeeccC
Confidence 444667789999999999999 55677877777644 77 9999999999999999999884 2222222
Q ss_pred cCCCCCHHHHHHhcccc--CCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCC
Q 023354 117 DIFTKEDGEFLMRNGAL--PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADY 194 (283)
Q Consensus 117 d~~~~~~~~~~~~ig~v--~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~ 194 (283)
.+.++.. ...+.+ ......+++++|...... .+.. -+.+.+.-+..-+|.
T Consensus 83 k~~tTr~----~~~~~~~~~~~qi~~~DTpG~~~~~~---------~l~~---------------~~~r~~~~~l~~aDv 134 (339)
T PRK15494 83 KVQTTRS----IITGIITLKDTQVILYDTPGIFEPKG---------SLEK---------------AMVRCAWSSLHSADL 134 (339)
T ss_pred CCCCccC----cEEEEEEeCCeEEEEEECCCcCCCcc---------cHHH---------------HHHHHHHHHhhhCCE
Confidence 2222211 011111 111122444555321000 0000 001111112234578
Q ss_pred cEEEEeCCCCC-Cchhhc---CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHH
Q 023354 195 IIYIIDVSGGD-KIPRKG---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 270 (283)
Q Consensus 195 ~l~llDpt~g~-~l~~~~---~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l 270 (283)
+++++|++... ...... ......+..+|+||.|+... ....+.+.+....+..+++++||++|.|+++++++|
T Consensus 135 il~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L 211 (339)
T PRK15494 135 VLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYI 211 (339)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHH
Confidence 88999976532 111110 00112345789999998532 233333444444455789999999999999999999
Q ss_pred HHHHH
Q 023354 271 LQAWE 275 (283)
Q Consensus 271 ~~~~~ 275 (283)
....+
T Consensus 212 ~~~l~ 216 (339)
T PRK15494 212 TSKAK 216 (339)
T ss_pred HHhCC
Confidence 87654
No 392
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.39 E-value=1.5e-12 Score=121.48 Aligned_cols=170 Identities=21% Similarity=0.228 Sum_probs=105.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhcccc-CCchHHHHHhCCCCCCChHHHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL-PEERIRAVETGGCPHAAIREDISIN 158 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v-~q~~~~~i~~~g~~~~~~~~~~~~~ 158 (283)
..-.++|+|++++|||||+|+|+|..+ .+.....+++.|. + .+-+- -+..+.+++|.|..... .+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR-----~Iv~~~aGTTRD~-I--~~~~e~~~~~~~liDTAGiRrk~------ki 242 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER-----VIVSDIAGTTRDS-I--DIEFERDGRKYVLIDTAGIRRKG------KI 242 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce-----EEecCCCCccccc-e--eeeEEECCeEEEEEECCCCCccc------cc
Confidence 357899999999999999999999643 3344444444431 0 00000 01122355666543221 01
Q ss_pred HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCC----cccccCEEEEEcCCcccccCC
Q 023354 159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGP----GITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~----~i~~ad~ivi~K~g~i~~~g~ 234 (283)
.+.++.+ | ..|..-|...++.+++|+|++.+..-+.+... -...+..|++||||++..+..
T Consensus 243 ~e~~E~~------------S---v~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~ 307 (444)
T COG1160 243 TESVEKY------------S---VARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEA 307 (444)
T ss_pred ccceEEE------------e---ehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhh
Confidence 1112222 1 12333344556889999999987543332111 124678999999999886434
Q ss_pred hHHHHhHHHHhh---cCCCCeEEEEeccCCCHHHHHHHHHHHHHHhh
Q 023354 235 DLAVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 278 (283)
Q Consensus 235 ~~e~~~~~~~~~---~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~~ 278 (283)
..+.+...+... ..++|++++||++|.|+..+++.+.+.++.+.
T Consensus 308 ~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 308 TMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred HHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence 555555555443 46889999999999999999999999987664
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.4e-13 Score=123.54 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=92.2
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+..-.+.+.|+|+... +.....+|-.. ...|+|+||||+||||||++|+|.+.|+ |...-. .+-+
T Consensus 584 PPvLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~ 651 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLR 651 (807)
T ss_pred CCeeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceee
Confidence 45567789999988754 56677888766 7789999999999999999999998886 654311 1124
Q ss_pred ccccCCchHHHHHhCCCCCCChHH----HHHHHHHHHHHccccccCCCc-ccC-CchHHHHHHHHHH-hcCCcEEEEe-C
Q 023354 130 NGALPEERIRAVETGGCPHAAIRE----DISINLGPLEELSNLFKADLL-LCE-SGGDNLAANFSRE-LADYIIYIID-V 201 (283)
Q Consensus 130 ig~v~q~~~~~i~~~g~~~~~~~~----~~~~~~~~l~~l~~~~~~d~~-i~e-SgGq~q~~~ia~a-l~~~~l~llD-p 201 (283)
||+..|...+.+..--.+.-.+.. ........|-.+++..-...+ +.. ||||+-||++|.. +..|-|+++| |
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP 731 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence 566555432221110000000000 112334566666665443332 333 9999999999953 4458888888 9
Q ss_pred CCCCCch
Q 023354 202 SGGDKIP 208 (283)
Q Consensus 202 t~g~~l~ 208 (283)
|+.+++.
T Consensus 732 TNNLDIE 738 (807)
T KOG0066|consen 732 TNNLDIE 738 (807)
T ss_pred CCCcchh
Confidence 9987653
No 394
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.38 E-value=1.6e-12 Score=126.17 Aligned_cols=138 Identities=19% Similarity=0.089 Sum_probs=84.7
Q ss_pred cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+.+.+..-.-|+.. ..+++.+|..+ |+.+.|.|++|||||||+|+|+|+.+-. |+|..=.. .++-|
T Consensus 393 i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lf 460 (604)
T COG4178 393 ITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLF 460 (604)
T ss_pred eEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEE
Confidence 44444444433333 56788888855 9999999999999999999999998754 77653211 12345
Q ss_pred cCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcc----cC---CchHHHHHHHHHHhcC-CcEE
Q 023354 133 LPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLL----CE---SGGDNLAANFSRELAD-YIIY 197 (283)
Q Consensus 133 v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i----~e---SgGq~q~~~ia~al~~-~~l~ 197 (283)
+||.|. +.+-.+........+ ...+.|.++++.+..++.= ++ |+|++||+++||.+.+ |.++
T Consensus 461 lpQ~PY~p~GtLre~l~YP~~~~~~~d~---~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v 537 (604)
T COG4178 461 LPQRPYLPQGTLREALCYPNAAPDFSDA---ELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWV 537 (604)
T ss_pred ecCCCCCCCccHHHHHhCCCCCCCCChH---HHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEE
Confidence 555543 223233222111111 2234444444433222211 22 9999999999999996 8888
Q ss_pred EEe-CCCCCCc
Q 023354 198 IID-VSGGDKI 207 (283)
Q Consensus 198 llD-pt~g~~l 207 (283)
++| +|++.|.
T Consensus 538 ~LDEATsALDe 548 (604)
T COG4178 538 FLDEATSALDE 548 (604)
T ss_pred EEecchhccCh
Confidence 888 7766543
No 395
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.37 E-value=8.9e-13 Score=108.96 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=92.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCC-HHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHH
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~ 160 (283)
+++.|+|++|||||||++.+++... ..++.+..++.+... +.+....- ... ..-..+||.||+.+.++...+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~-~~~~~~i~~~~G~~~~d~~~~~~~----~~~-v~~l~~GCiCC~~~~~l~~~l~ 74 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQH-GRKIAVIENEFGEVGIDNQLVVDT----DEE-IIEMNNGCICCTVRGDLIRALL 74 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhccc-CCcEEEEecCCCccchhHHHHhCC----Cce-EEEeCCCEeEeeCchhHHHHHH
Confidence 4688999999999999999998643 346777777776443 33332211 111 1113579999988777654432
Q ss_pred -HHHHc-cccccCCCcccCCchHHHHHHHHHHh-----------cCCcEEEEeCCCCCCch---hhcCCcccccCEEEEE
Q 023354 161 -PLEEL-SNLFKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKIP---RKGGPGITQADLLVIN 224 (283)
Q Consensus 161 -~l~~l-~~~~~~d~~i~eSgGq~q~~~ia~al-----------~~~~l~llDpt~g~~l~---~~~~~~i~~ad~ivi~ 224 (283)
.++.+ .....+++++.|+.|......+...+ ++.+++++|+.+..+.. .....|+++||.|++|
T Consensus 75 ~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivln 154 (158)
T cd03112 75 DLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLN 154 (158)
T ss_pred HHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEe
Confidence 22333 23457899999988875444444332 24789999987764322 2234567999999999
Q ss_pred cCCc
Q 023354 225 KTDL 228 (283)
Q Consensus 225 K~g~ 228 (283)
|.|+
T Consensus 155 k~dl 158 (158)
T cd03112 155 KTDL 158 (158)
T ss_pred cccC
Confidence 9985
No 396
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=1.5e-13 Score=141.14 Aligned_cols=168 Identities=17% Similarity=0.088 Sum_probs=114.3
Q ss_pred CCCCcccc-cccCCCcEEEEEcCCCCcHHHHHHHHHhcccC---CCcEEEEeecCCCCCHHHHHHhccccCCchH-----
Q 023354 68 RAPPILSR-NFNERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (283)
Q Consensus 68 ~~~~~~~~-~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (283)
+...|+++ -+-++|-.+||+|.+||||||||+.|+|.... +|.|.+.+.... ...+.|.+|||.|+.+
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~---q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD---QETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc---hhhhccccceeecccccCccc
Confidence 33445544 44577999999999999999999999997542 378888776543 2567889999998764
Q ss_pred ---HHHHhC---CCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-----CchHHHHHHHHHHhc-CC-cEEEEe-CCC
Q 023354 139 ---RAVETG---GCPHA-AIREDISINLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DY-IIYIID-VSG 203 (283)
Q Consensus 139 ---~~i~~~---g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~-~l~llD-pt~ 203 (283)
+-+.+. +.+.. ...+..+.+.+.++.+.+....|.+++. |..||+|+.||-+|+ +| .|+++| ||+
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTS 959 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS 959 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCC
Confidence 112221 22221 2233334566677777777788888876 889999999998887 56 666666 999
Q ss_pred CCCchhh------------cCCc------------ccccCEEEEEcC-CcccccCChHHH
Q 023354 204 GDKIPRK------------GGPG------------ITQADLLVINKT-DLASAIGADLAV 238 (283)
Q Consensus 204 g~~l~~~------------~~~~------------i~~ad~ivi~K~-g~i~~~g~~~e~ 238 (283)
|+|-+.. .+.+ ++..|+++++|. |+.++.|+.-+-
T Consensus 960 GLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 960 GLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred CccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 9763211 1111 367788888886 556776654433
No 397
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.34 E-value=6.4e-13 Score=117.79 Aligned_cols=128 Identities=21% Similarity=0.197 Sum_probs=77.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEEee-cCCCC--CHHHHHHhccccCCchHH----------------
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTN-DIFTK--EDGEFLMRNGALPEERIR---------------- 139 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~~~-d~~~~--~~~~~~~~ig~v~q~~~~---------------- 139 (283)
..+++|+||||||||||+++|++++.++ +++.+.+. ++... ........+++++|++..
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5689999999999999999999998764 45555443 22111 001122367777876310
Q ss_pred -HHHhCCCCC--C-ChHHHHHHHHHHHHHcccc--------------------ccCCCcccC-CchHHHHHHHHHHhc--
Q 023354 140 -AVETGGCPH--A-AIREDISINLGPLEELSNL--------------------FKADLLLCE-SGGDNLAANFSRELA-- 192 (283)
Q Consensus 140 -~i~~~g~~~--~-~~~~~~~~~~~~l~~l~~~--------------------~~~d~~i~e-SgGq~q~~~ia~al~-- 192 (283)
.+..++... . ........+.+.|+.++.. ...+..+.+ |+||+||+++|++++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 011111100 0 0111223555677776553 122344445 999999999999885
Q ss_pred ---CCcEEEEe-CCCCCCch
Q 023354 193 ---DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 193 ---~~~l~llD-pt~g~~l~ 208 (283)
.+.++++| |+++.+..
T Consensus 185 ~~~~~~illlDEPt~~ld~~ 204 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLS 204 (251)
T ss_pred hccCCCEEEEeCCCcCCCHH
Confidence 45777777 99987643
No 398
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.30 E-value=1.2e-11 Score=132.45 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=57.8
Q ss_pred HHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc----CCcEEEEe-CCCCCCchh------------hcCCc------
Q 023354 160 GPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA----DYIIYIID-VSGGDKIPR------------KGGPG------ 214 (283)
Q Consensus 160 ~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~----~~~l~llD-pt~g~~l~~------------~~~~~------ 214 (283)
+.|+.+++.+. .+..+.+ |+||+||+.+|++++ +|.++++| |+++.+... +.+.+
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 45566665554 5666666 999999999999996 68888888 999965321 11211
Q ss_pred ----ccccCEEEEEc------CCcccccCChHHHH
Q 023354 215 ----ITQADLLVINK------TDLASAIGADLAVM 239 (283)
Q Consensus 215 ----i~~ad~ivi~K------~g~i~~~g~~~e~~ 239 (283)
+..||++++++ .|.+++.|++.+++
T Consensus 871 dl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 871 NMHVVKVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 27899999996 68888888877665
No 399
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.28 E-value=2.3e-11 Score=113.69 Aligned_cols=157 Identities=22% Similarity=0.243 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHHH
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP 161 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~ 161 (283)
++|+|+|++++|||||+|.|+|. +++++..-++.++|... ..+-.....+.+++|||...... +.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~-----r~AIV~D~pGvTRDr~y--~~~~~~~~~f~lIDTgGl~~~~~--------~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR-----RIAIVSDTPGVTRDRIY--GDAEWLGREFILIDTGGLDDGDE--------DE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-----eeeEeecCCCCccCCcc--ceeEEcCceEEEEECCCCCcCCc--------hH
Confidence 68999999999999999999995 67888877777766421 11222222345678888753221 01
Q ss_pred HHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHH
Q 023354 162 LEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLA 237 (283)
Q Consensus 162 l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e 237 (283)
+... +++.+..|..-+|.+|+|+|...|.....+. .......-.+++||+|...++ +
T Consensus 69 l~~~---------------i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e----~ 129 (444)
T COG1160 69 LQEL---------------IREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE----E 129 (444)
T ss_pred HHHH---------------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh----h
Confidence 1111 1455666777789999999988874322111 111134568999999987331 1
Q ss_pred HHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354 238 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 238 ~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
... . .-..+..+++.+||.+|.|+.+|++++.+.+
T Consensus 130 ~~~-e-fyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 130 LAY-E-FYSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred hHH-H-HHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 111 1 1223556789999999999999999999886
No 400
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.28 E-value=1.4e-10 Score=95.77 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=55.4
Q ss_pred cCCcEEEEeCCCCCCc-hhhc-CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 192 ADYIIYIIDVSGGDKI-PRKG-GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l-~~~~-~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
++.+++++|++..... ..+. ......+..+++||.|+... ..+.+.+.+.+.....|++++|+++|+|+++|+++
T Consensus 65 ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~ 141 (158)
T PRK15467 65 VDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDY 141 (158)
T ss_pred CCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHH
Confidence 4788999998876421 1111 01112345899999997432 23334444444444469999999999999999999
Q ss_pred HHHHHHHhh
Q 023354 270 ILQAWEAST 278 (283)
Q Consensus 270 l~~~~~~~~ 278 (283)
+.+..+...
T Consensus 142 l~~~~~~~~ 150 (158)
T PRK15467 142 LASLTKQEE 150 (158)
T ss_pred HHHhchhhh
Confidence 988875443
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.28 E-value=4.3e-12 Score=118.12 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch-------HHHHHh---CC-C
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-------IRAVET---GG-C 146 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-------~~~i~~---~g-~ 146 (283)
..||+++++||||-||||++++|+|.++|+ |. ..++ +++|-||.- ...+.. .. +
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~~~ 430 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGTVEDLLRSAIRSAF 430 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCcHHHHHHHhhhhhc
Confidence 358999999999999999999999999997 65 1111 233333321 111111 00 1
Q ss_pred CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
.... ...+.+..|.+...+++.+.+ |||+.||++||.+|+ +.-|+|+| |++.+|.
T Consensus 431 ~~s~------~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv 488 (591)
T COG1245 431 GSSY------FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488 (591)
T ss_pred ccch------hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH
Confidence 1110 112345566667777888888 999999999999998 48888888 8887654
No 402
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.27 E-value=7.6e-11 Score=95.15 Aligned_cols=79 Identities=20% Similarity=0.220 Sum_probs=56.4
Q ss_pred hcCCcEEEEeCCCCCC-chhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 191 LADYIIYIIDVSGGDK-IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 191 l~~~~l~llDpt~g~~-l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
-++.+++|.|++.... ++......+...-+-||+|.|+... ....+... ..++.....+++.+|+.+|+|+++|.++
T Consensus 63 dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~-~~~i~~a~-~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 63 DADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSD-DANIERAK-KWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred hCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccc-hhhHHHHH-HHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 4568889999887543 4444445566677889999998732 12333333 3455566678899999999999999999
Q ss_pred HH
Q 023354 270 IL 271 (283)
Q Consensus 270 l~ 271 (283)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 85
No 403
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.26 E-value=2.6e-11 Score=108.64 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=85.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhcccc--CCchHHHHHhCCCCCCChHHHHHHHHH
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL--PEERIRAVETGGCPHAAIREDISINLG 160 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v--~q~~~~~i~~~g~~~~~~~~~~~~~~~ 160 (283)
+|+|+|++|||||||+|+|+|. .+.+....+.++... ..|+. ......+++++|...... .+. +
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~-----~~~~vs~~~~TTr~~----i~~i~~~~~~qii~vDTPG~~~~~~--~l~---~ 67 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ-----KISITSPKAQTTRNR----ISGIHTTGASQIIFIDTPGFHEKKH--SLN---R 67 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----cEeecCCCCCcccCc----EEEEEEcCCcEEEEEECcCCCCCcc--hHH---H
Confidence 6899999999999999999984 233333333332210 01111 111123455666432100 000 0
Q ss_pred HHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcC---CcccccCEEEEEcCCcccccCChHH
Q 023354 161 PLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGG---PGITQADLLVINKTDLASAIGADLA 237 (283)
Q Consensus 161 ~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~---~~i~~ad~ivi~K~g~i~~~g~~~e 237 (283)
.+ ...+.-+..-+|.+++++|++.......... ......-.+++||.|++.. ....
T Consensus 68 ~~-------------------~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~--~~~~ 126 (270)
T TIGR00436 68 LM-------------------MKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFK--DKLL 126 (270)
T ss_pred HH-------------------HHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCH--HHHH
Confidence 00 0111111223568899999876532211100 0113345899999998632 1111
Q ss_pred HHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 238 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 238 ~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.............+++++||++|.|+++|+++|.+.++
T Consensus 127 ~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 127 PLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred HHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 11122223333458999999999999999999988764
No 404
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.21 E-value=8.5e-11 Score=120.71 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=54.8
Q ss_pred HHHccccc-cCCCcccC-CchHHHHHHHHHHhcC-C---cEEEEe-CCCCCCchh------------hcCCc--------
Q 023354 162 LEELSNLF-KADLLLCE-SGGDNLAANFSRELAD-Y---IIYIID-VSGGDKIPR------------KGGPG-------- 214 (283)
Q Consensus 162 l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~-~---~l~llD-pt~g~~l~~------------~~~~~-------- 214 (283)
|+.+++.+ ..+..+.+ |+||+||+.+|++|+. + .++|+| |+++.+... +.+.+
T Consensus 814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~ 893 (943)
T PRK00349 814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL 893 (943)
T ss_pred HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 34444443 24555555 9999999999999985 5 688888 999865321 11212
Q ss_pred --ccccCEEEEE------cCCcccccCChHHHH
Q 023354 215 --ITQADLLVIN------KTDLASAIGADLAVM 239 (283)
Q Consensus 215 --i~~ad~ivi~------K~g~i~~~g~~~e~~ 239 (283)
+..||+|+.+ +.|.+++.|++.+++
T Consensus 894 ~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 894 DVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred HHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 2679999999 789999988876654
No 405
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.20 E-value=8.5e-11 Score=111.44 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=89.4
Q ss_pred CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC---CcEEEEeecCCCCCHHHHHHhcc-ccCCchHH---HH
Q 023354 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK---YSLAAVTNDIFTKEDGEFLMRNG-ALPEERIR---AV 141 (283)
Q Consensus 70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~---g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~~---~i 141 (283)
..+.+..|. .+|+.+||+|+|||||||+|+++.+...|. -.+.....++.. ++......+- ...+...+ +.
T Consensus 89 ~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~p-s~~~av~~v~~~~~~e~~rle~~~ 167 (614)
T KOG0927|consen 89 ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEP-SEKQAVQAVVMETDHERKRLEYLA 167 (614)
T ss_pred eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCC-chHHHHHHHhhhhHHHHHHHHHHH
Confidence 355677776 459999999999999999999999987664 233333333321 1111111110 01111100 00
Q ss_pred H-hC-CCCC---CCh---H--------HHHH-HHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-
Q 023354 142 E-TG-GCPH---AAI---R--------EDIS-INLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELAD-YIIYIID- 200 (283)
Q Consensus 142 ~-~~-g~~~---~~~---~--------~~~~-~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD- 200 (283)
+ +. .|.. ... . +.++ .+...|..++.. ...++.+.+ |||++.|+++||+|.. |.++|+|
T Consensus 168 E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDE 247 (614)
T KOG0927|consen 168 EDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDE 247 (614)
T ss_pred HHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecC
Confidence 0 00 0111 000 0 0111 222344444322 234455555 9999999999999985 8888888
Q ss_pred CCCCCCchh---------hcCC-cc-----------cccCEEEEEcCCccccc
Q 023354 201 VSGGDKIPR---------KGGP-GI-----------TQADLLVINKTDLASAI 232 (283)
Q Consensus 201 pt~g~~l~~---------~~~~-~i-----------~~ad~ivi~K~g~i~~~ 232 (283)
||+++|+.. ++.. .+ ..|..||-++..++++.
T Consensus 248 PtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 248 PTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred CccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeee
Confidence 999987642 1222 11 56777777777775443
No 406
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.20 E-value=9.4e-11 Score=109.89 Aligned_cols=161 Identities=25% Similarity=0.263 Sum_probs=96.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHH
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~ 158 (283)
.+|..++|+|+|++|||||||+|++. ..+++..-.++++|. .+..--+-..+...++|.|.....
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~-----d~AIVTdI~GTTRDv--iee~i~i~G~pv~l~DTAGiRet~-------- 279 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGR-----DRAIVTDIAGTTRDV--IEEDINLNGIPVRLVDTAGIRETD-------- 279 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcC-----CceEecCCCCCccce--EEEEEEECCEEEEEEecCCcccCc--------
Confidence 35899999999999999999999996 446666666666552 111001112233455566543221
Q ss_pred HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchh--hcC-CcccccCEEEEEcCCcccccCCh
Q 023354 159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR--KGG-PGITQADLLVINKTDLASAIGAD 235 (283)
Q Consensus 159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~--~~~-~~i~~ad~ivi~K~g~i~~~g~~ 235 (283)
..+++.+ -.|..-+..-+|.+++|+|++....-.. .+. ..-.....+|+||.|+.....
T Consensus 280 -d~VE~iG---------------IeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~-- 341 (454)
T COG0486 280 -DVVERIG---------------IERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIE-- 341 (454)
T ss_pred -cHHHHHH---------------HHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccc--
Confidence 1222221 1122222234578999999877421111 011 111233489999999987632
Q ss_pred HHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 236 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 236 ~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
.... +.....+++.+|+++++|++.|.+.|.+.+...
T Consensus 342 ~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 342 LESE-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cchh-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 1111 233445789999999999999999999887654
No 407
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.19 E-value=1.3e-10 Score=109.29 Aligned_cols=168 Identities=19% Similarity=0.168 Sum_probs=119.5
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC-CCCCHHHHHH-hccccCCchH------
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLM-RNGALPEERI------ 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~-~~~~~~~~~~-~ig~v~q~~~------ 138 (283)
...+.+++|..+ ||+++|.|=.|-|-+-|+.+|+|+.++. |+|.+.+.++ ...++.++++ .++|||.+..
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~ 350 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL 350 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcccc
Confidence 456888999966 9999999999999999999999998765 9999999997 5556665544 5999998863
Q ss_pred -----HHHHhCCCC---C-----CChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354 139 -----RAVETGGCP---H-----AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (283)
Q Consensus 139 -----~~i~~~g~~---~-----~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p 201 (283)
+...++... . ...........+.+++|.... ....+... |||..|++-+||.+. +|.++++. |
T Consensus 351 ~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qP 430 (501)
T COG3845 351 DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP 430 (501)
T ss_pred CccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCC
Confidence 111111111 1 111222224455677776553 34444544 999999999999998 48888887 9
Q ss_pred CCCCCchh------------hcCC-----------cccccCEEEEEcCCcccccCChH
Q 023354 202 SGGDKIPR------------KGGP-----------GITQADLLVINKTDLASAIGADL 236 (283)
Q Consensus 202 t~g~~l~~------------~~~~-----------~i~~ad~ivi~K~g~i~~~g~~~ 236 (283)
|.|.|+-. ..+. .+..||+|.++..|++....++.
T Consensus 431 TrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 431 TRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 99977421 1111 13789999999999997754443
No 408
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.18 E-value=2.3e-12 Score=111.57 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=29.0
Q ss_pred ccCCCcccC-CchHHHHHHHHHHhc----C-CcEEEEe-CCCCCCc
Q 023354 169 FKADLLLCE-SGGDNLAANFSRELA----D-YIIYIID-VSGGDKI 207 (283)
Q Consensus 169 ~~~d~~i~e-SgGq~q~~~ia~al~----~-~~l~llD-pt~g~~l 207 (283)
...+..+.. |+||+||+.+|++++ + |.++++| |+++.|.
T Consensus 119 ~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~ 164 (212)
T cd03274 119 KKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDF 164 (212)
T ss_pred cccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCH
Confidence 334444444 999999999999885 3 5677777 9998764
No 409
>PRK00089 era GTPase Era; Reviewed
Probab=99.17 E-value=1.2e-10 Score=105.31 Aligned_cols=162 Identities=22% Similarity=0.210 Sum_probs=89.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCC--chHHHHHhCCCCCCChHHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE--ERIRAVETGGCPHAAIREDISI 157 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q--~~~~~i~~~g~~~~~~~~~~~~ 157 (283)
+.-+|+|+|++|||||||+|.|+|. .+.+....+.++.. ...++... ....+++++|..... ..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~-----~~~~vs~~~~tt~~----~i~~i~~~~~~qi~~iDTPG~~~~~--~~--- 69 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQ-----KISIVSPKPQTTRH----RIRGIVTEDDAQIIFVDTPGIHKPK--RA--- 69 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCC-----ceeecCCCCCcccc----cEEEEEEcCCceEEEEECCCCCCch--hH---
Confidence 3347999999999999999999984 33333333332211 11122111 122345666653211 00
Q ss_pred HHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCC-chhh---cCCcccccCEEEEEcCCcccccC
Q 023354 158 NLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDK-IPRK---GGPGITQADLLVINKTDLASAIG 233 (283)
Q Consensus 158 ~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~-l~~~---~~~~i~~ad~ivi~K~g~i~~~g 233 (283)
+... ..+.+.-+..-+|.+++++|++.... .... ..........+|+||.|++...
T Consensus 70 ----l~~~---------------~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~- 129 (292)
T PRK00089 70 ----LNRA---------------MNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDK- 129 (292)
T ss_pred ----HHHH---------------HHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCH-
Confidence 0000 01111112233578899999876311 1111 0111235679999999987321
Q ss_pred ChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 234 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 234 ~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.........+.+..+..+++.+|++++.|+++++++|....+
T Consensus 130 ~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 130 EELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 111222233344445678999999999999999999987754
No 410
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.17 E-value=2.1e-11 Score=104.92 Aligned_cols=115 Identities=20% Similarity=0.108 Sum_probs=61.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-HHHHhCCCCCCChHHHHH
Q 023354 83 TVGIGGPVGTGKTALMLALC----KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETGGCPHAAIREDIS 156 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~----g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~i~~~g~~~~~~~~~~~ 156 (283)
+++|+||||||||||+++|+ |...++ +.+......+.. ......+++++|++. ..... +...+..+++.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v--~r~~~~~~~~~ 98 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTI--TRSLAILENVI 98 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEE--EEEhhHhhcee
Confidence 99999999999999999995 766654 444311111111 112345777777651 00000 00000000000
Q ss_pred H-HHHHHHHccccccCCCcccC-CchHHHH------HHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 157 I-NLGPLEELSNLFKADLLLCE-SGGDNLA------ANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 157 ~-~~~~l~~l~~~~~~d~~i~e-SgGq~q~------~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
. ....+..+ .+..+.. |+||+|+ ++++++++ +|.++++| |+++.+.
T Consensus 99 ~~~~~~~~~~-----~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~ 154 (204)
T cd03240 99 FCHQGESNWP-----LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154 (204)
T ss_pred eechHHHHHH-----HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCH
Confidence 0 00011111 1333334 9999996 56777776 57777777 9988764
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=1.3e-10 Score=119.11 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=53.1
Q ss_pred HHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchhh------------cCCc-------
Q 023354 161 PLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPRK------------GGPG------- 214 (283)
Q Consensus 161 ~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~~------------~~~~------- 214 (283)
.|..+++.+ ..+..+.+ |+||+||+.+|++++. +.++++| |+++.+.... .+.+
T Consensus 811 ~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 811 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHN 890 (924)
T ss_pred HHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 334444433 24555555 9999999999999983 6788888 9998653211 1111
Q ss_pred ---ccccCEEEEE------cCCcccccCChHH
Q 023354 215 ---ITQADLLVIN------KTDLASAIGADLA 237 (283)
Q Consensus 215 ---i~~ad~ivi~------K~g~i~~~g~~~e 237 (283)
+..||+++++ +.|++++.|++.+
T Consensus 891 ~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 891 LDVIKTADYIIDLGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred HHHHHhCCEEEEecCCccCCCCEEEEeCCHHH
Confidence 2679999999 7899988887654
No 412
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.15 E-value=3.3e-11 Score=102.32 Aligned_cols=174 Identities=12% Similarity=0.097 Sum_probs=116.9
Q ss_pred CCCCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC-----cEEEEeecCCCCCHHHHHH----hccccCCc
Q 023354 67 RRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKY-----SLAAVTNDIFTKEDGEFLM----RNGALPEE 136 (283)
Q Consensus 67 ~~~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-----~i~i~~~d~~~~~~~~~~~----~ig~v~q~ 136 (283)
.+..++++++++ .+|++-|++|.+|||||-+.|+|+|..+.+. +..+.+.++-+..+.++++ .++++||+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 444567788887 4599999999999999999999999887644 3455666666777776655 46778998
Q ss_pred hHHH-----------HH-hCCCCCC-C----hHHHHHHHHHHHHHccccccCCC---cccC-CchHHHHHHHHHHhcC-C
Q 023354 137 RIRA-----------VE-TGGCPHA-A----IREDISINLGPLEELSNLFKADL---LLCE-SGGDNLAANFSRELAD-Y 194 (283)
Q Consensus 137 ~~~~-----------i~-~~g~~~~-~----~~~~~~~~~~~l~~l~~~~~~d~---~i~e-SgGq~q~~~ia~al~~-~ 194 (283)
+... +. .++..+. . ..-...++.+.|..++.++-.|. +..| +.|+-|+|.||.|+++ |
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqP 177 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQP 177 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCC
Confidence 7521 11 1221111 0 11122345667777777654332 2334 8999999999999995 9
Q ss_pred cEEEEe-CCCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 195 IIYIID-VSGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 195 ~l~llD-pt~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.+++.| ||+..+. .+..+.+ -++||+|-++.+|.-++.++..+.+.
T Consensus 178 rLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 178 RLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred ceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhc
Confidence 999988 8876431 1111111 27899999999999888766665543
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=108.09 Aligned_cols=134 Identities=20% Similarity=0.142 Sum_probs=84.0
Q ss_pred cccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH------------
Q 023354 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------------ 138 (283)
Q Consensus 72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------------ 138 (283)
|.+.....+|.++||+|+||-||||.++.|+|.+.|+ |+.. .++. + +.-+.+--|--.|+-+
T Consensus 91 L~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~---~pp~-w-deVi~~FrGtELq~YF~~l~~g~~r~v~ 165 (591)
T COG1245 91 LYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE---DPPS-W-DEVIKRFRGTELQNYFKKLYEGELRAVH 165 (591)
T ss_pred EecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC---CCCC-H-HHHHHHhhhhHHHHHHHHHHcCCcceec
Confidence 4455555679999999999999999999999999997 6531 1111 1 1001111111111110
Q ss_pred --HHHH-hCCCCCCChHHHHH------HHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354 139 --RAVE-TGGCPHAAIREDIS------INLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (283)
Q Consensus 139 --~~i~-~~g~~~~~~~~~~~------~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~ 206 (283)
.+++ .+......+.+.+. ...+.++.+.+....++-+.+ |||+-||++||.+++ +.-++++| |++.+|
T Consensus 166 K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLD 245 (591)
T COG1245 166 KPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245 (591)
T ss_pred chHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccccc
Confidence 1222 11111112222222 233466777777788888887 999999999999998 57788888 999888
Q ss_pred chhh
Q 023354 207 IPRK 210 (283)
Q Consensus 207 l~~~ 210 (283)
+.+.
T Consensus 246 i~qR 249 (591)
T COG1245 246 IRQR 249 (591)
T ss_pred HHHH
Confidence 7654
No 414
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=6.2e-11 Score=111.80 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=72.0
Q ss_pred CCCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEee--cCCCCCHHHHHHhccccCCchHHHHHhC
Q 023354 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN--DIFTKEDGEFLMRNGALPEERIRAVETG 144 (283)
Q Consensus 68 ~~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~--d~~~~~~~~~~~~ig~v~q~~~~~i~~~ 144 (283)
.+..++..++. .+|..+||+|+||+||||||++|+. +.|..... ++.+-.... .. ..+..+. ...++-
T Consensus 92 ~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~veqE~~g~~t~~-~~--~~l~~D~-~~~dfl 162 (582)
T KOG0062|consen 92 GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVEQEVRGDDTEA-LQ--SVLESDT-ERLDFL 162 (582)
T ss_pred chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----cCcCccCchhheeccchHH-Hh--hhhhccH-HHHHHH
Confidence 44566777776 4599999999999999999999988 23222211 111100000 00 0000000 000000
Q ss_pred C-CCCCChHHHHHHHHH-HHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 145 G-CPHAAIREDISINLG-PLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 145 g-~~~~~~~~~~~~~~~-~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
. .......-....+.. .|..++-.. -..+++.+ |||.+.|+++|||+. +|-|+||| ||+-+|+.
T Consensus 163 ~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~ 232 (582)
T KOG0062|consen 163 AEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV 232 (582)
T ss_pred HhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH
Confidence 0 000000001111122 555554433 23445555 999999999999987 68888888 99987764
No 415
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.14 E-value=4.7e-10 Score=102.77 Aligned_cols=169 Identities=16% Similarity=0.248 Sum_probs=102.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC------HHHHHHhccccCCchHHHHHhCCCCCCCh
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE------DGEFLMRNGALPEERIRAVETGGCPHAAI 151 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~------~~~~~~~ig~v~q~~~~~i~~~g~~~~~~ 151 (283)
.++.+++|+|||||||||++..|++.+.+. ++|.+++.|+.... ....+..+.++++.. +..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~------~~dp---- 181 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE------GADP---- 181 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC------CCCH----
Confidence 358999999999999999999999998877 78999998875421 111222344443311 1110
Q ss_pred HHHHHHHHHHHHHccccccCCCcccCCchHHH-----HH---HHHHH---hc----CCcEEEEeCCCCCCchhhcCCcc-
Q 023354 152 REDISINLGPLEELSNLFKADLLLCESGGDNL-----AA---NFSRE---LA----DYIIYIIDVSGGDKIPRKGGPGI- 215 (283)
Q Consensus 152 ~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q-----~~---~ia~a---l~----~~~l~llDpt~g~~l~~~~~~~i- 215 (283)
...+.+.+... ....+|.+++++.|..+ .- .+.+. +. +..++++|++.+.+-..+.....
T Consensus 182 ---a~~v~~~l~~~-~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~ 257 (318)
T PRK10416 182 ---ASVAFDAIQAA-KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHE 257 (318)
T ss_pred ---HHHHHHHHHHH-HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHh
Confidence 01112233222 34678999999777421 11 11111 11 25789999988753222211111
Q ss_pred -cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 216 -TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 216 -~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
-..+.+|++|.|....-|.....+.. .+.|+.+++ +|+++++|..+
T Consensus 258 ~~~~~giIlTKlD~t~~~G~~l~~~~~------~~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 258 AVGLTGIILTKLDGTAKGGVVFAIADE------LGIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred hCCCCEEEEECCCCCCCccHHHHHHHH------HCCCEEEEe--CCCChhhCccC
Confidence 13578999999977665655544422 278999988 88888776543
No 416
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.13 E-value=2.9e-10 Score=94.97 Aligned_cols=164 Identities=18% Similarity=0.138 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCc-EEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHHH
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDKYS-LAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP 161 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~-i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~ 161 (283)
.|+|+|..|||||||++.|++...+.+. ..... ........+..+.+.... .+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~-------------- 55 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE-TFLDVLKEERERGITIKS----------GVA-------------- 55 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec-ccccCCHHHHHcCCCeec----------ceE--------------
Confidence 3799999999999999999997554322 11111 111111111111100000 000
Q ss_pred HHHccccccCCCcccCCchHHHHHHH---HHHhcCCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccC-
Q 023354 162 LEELSNLFKADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG- 233 (283)
Q Consensus 162 l~~l~~~~~~d~~i~eSgGq~q~~~i---a~al~~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g- 233 (283)
.+ .....+..++++.|+...... +..-++..++++|++.+...... ..........+++||.|++....
T Consensus 56 --~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~ 132 (189)
T cd00881 56 --TF-EWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDL 132 (189)
T ss_pred --EE-eeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcH
Confidence 00 001234455666665432222 22345789999998765422110 00112456799999999986311
Q ss_pred -ChHHHHhHHHHhh------------cCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354 234 -ADLAVMERDALRM------------RDGGPFIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 234 -~~~e~~~~~~~~~------------~~~~~i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
...+.+.+.+... ....+++++|+++|.|+++++++|...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 133 EEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 1112222222221 1357899999999999999999998765
No 417
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.13 E-value=4.1e-11 Score=106.00 Aligned_cols=31 Identities=39% Similarity=0.429 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEE
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLA 112 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~ 112 (283)
.+++|+|||||||||||.+|++++.+. +.+.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r 54 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLR 54 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 489999999999999999999988654 5443
No 418
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.12 E-value=4.9e-10 Score=90.93 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=52.3
Q ss_pred cCCcEEEEeCCCC-CCchhhcC---CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHH
Q 023354 192 ADYIIYIIDVSGG-DKIPRKGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 267 (283)
Q Consensus 192 ~~~~l~llDpt~g-~~l~~~~~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~ 267 (283)
++..++++|++.. .+...... ........+++||.|+..... ........+....+..+++.+|++++.|+++++
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKE-DLLPLLEKLKELGPFAEIFPISALKGENVDELL 161 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHH-HHHHHHHHHHhccCCCceEEEEeccCCChHHHH
Confidence 4678999998764 21111100 111356789999999874322 222233344445556789999999999999999
Q ss_pred HHHHHH
Q 023354 268 NHILQA 273 (283)
Q Consensus 268 ~~l~~~ 273 (283)
++|.+.
T Consensus 162 ~~l~~~ 167 (168)
T cd04163 162 EEIVKY 167 (168)
T ss_pred HHHHhh
Confidence 998754
No 419
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.11 E-value=2.8e-10 Score=95.99 Aligned_cols=154 Identities=17% Similarity=0.147 Sum_probs=82.6
Q ss_pred cccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCCh
Q 023354 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151 (283)
Q Consensus 72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~ 151 (283)
++...+..+..+++|+|++|||||||++.+++-.... ..+ +..+ ..+.+ ...
T Consensus 10 ~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-------~~~-T~~~-----~~~~i--------~~~------- 61 (190)
T cd00879 10 LSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-------HVP-TLHP-----TSEEL--------TIG------- 61 (190)
T ss_pred HHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcc-------cCC-ccCc-----ceEEE--------EEC-------
Confidence 4455666666788999999999999999998732100 000 0000 00000 000
Q ss_pred HHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCch---hh----c--CCcccccC
Q 023354 152 REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIP---RK----G--GPGITQAD 219 (283)
Q Consensus 152 ~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l~---~~----~--~~~i~~ad 219 (283)
.....+.+.+|+.+.-.+.... ++..++++|.+....+. .. . ......+-
T Consensus 62 ------------------~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pv 123 (190)
T cd00879 62 ------------------NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPF 123 (190)
T ss_pred ------------------CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCE
Confidence 0111223344543332222222 25778889977532111 00 0 00112455
Q ss_pred EEEEEcCCcccccCChHHHHhHHHHhh--------------cCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354 220 LLVINKTDLASAIGADLAVMERDALRM--------------RDGGPFIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 220 ~ivi~K~g~i~~~g~~~e~~~~~~~~~--------------~~~~~i~~isa~~g~gi~~l~~~l~~~ 273 (283)
.|++||.|+... ...+.+...+... ....+++.+||++|+|++++++||.+.
T Consensus 124 ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 124 LILGNKIDLPGA--VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEeCCCCCCC--cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 888999998643 2233333332210 122468999999999999999999753
No 420
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.10 E-value=1.6e-10 Score=98.95 Aligned_cols=113 Identities=16% Similarity=-0.010 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHH------HhccccCCchHHHHHhCCCCCCChHHHH
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFL------MRNGALPEERIRAVETGGCPHAAIREDI 155 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~------~~ig~v~q~~~~~i~~~g~~~~~~~~~~ 155 (283)
.+.+|+|||||||||||.+|.-.+.........+. ...++. ..+.+.++... .+.........
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~-----~~~~~i~~~~~~~~i~~~~~~~~------~~~~~~~~~~~ 90 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGS-----SLKDLIKDGESSAKITVTLKNQG------LDANPLCVLSQ 90 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccc-----cHHHHhhCCCCeEEEEEEEEcCC------ccCCcCCHHHH
Confidence 37799999999999999999764432210000011 011111 12333333211 11110000111
Q ss_pred HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHh-----cCCcEEEEe-CCCCCCch
Q 023354 156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSREL-----ADYIIYIID-VSGGDKIP 208 (283)
Q Consensus 156 ~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al-----~~~~l~llD-pt~g~~l~ 208 (283)
..+.+.|+. ....+..+.. |+||+|++.+|+++ .+|.++++| |+++.+..
T Consensus 91 ~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 91 DMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred HHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 222334433 3334555555 99999999999988 368888888 99987653
No 421
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.08 E-value=2.5e-10 Score=93.92 Aligned_cols=97 Identities=19% Similarity=0.236 Sum_probs=56.2
Q ss_pred cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhH
Q 023354 174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
.+++.+|+.....+.... ++..++++|++....+.. .. . .....+-.+++||.|+... ...+.+..
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~ 130 (167)
T cd04160 53 KFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKE 130 (167)
T ss_pred EEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHH
Confidence 344456654333333332 357899999876432211 00 0 0113456899999997654 22233333
Q ss_pred HHHhh-----cCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354 242 DALRM-----RDGGPFIFAQVKHGLGVEEIVNHILQ 272 (283)
Q Consensus 242 ~~~~~-----~~~~~i~~isa~~g~gi~~l~~~l~~ 272 (283)
.+... ....+++.+|+++|.|++++++||..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 131 VFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 22221 13457999999999999999999853
No 422
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.08 E-value=7.3e-10 Score=91.73 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=44.2
Q ss_pred CCcEEEEeCCCCCCchh---h------cCCcccccCEEEEEcCCcccccCChHHHHhHHHH-hhcC--CCCeEEEEeccC
Q 023354 193 DYIIYIIDVSGGDKIPR---K------GGPGITQADLLVINKTDLASAIGADLAVMERDAL-RMRD--GGPFIFAQVKHG 260 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~~---~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~~~--~~~i~~isa~~g 260 (283)
+..++++|.+....+.. . .......+..+++||.|..... ..+.+.+.+. .... ..+++.+|+++|
T Consensus 83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCC
Confidence 46788899765321110 0 0001134557889999986542 2222222211 0000 124678999999
Q ss_pred CCHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQ 272 (283)
Q Consensus 261 ~gi~~l~~~l~~ 272 (283)
+|++++++||.+
T Consensus 161 ~gi~~~~~~l~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHhc
Confidence 999999999853
No 423
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.08 E-value=1.4e-09 Score=102.30 Aligned_cols=211 Identities=17% Similarity=0.155 Sum_probs=112.2
Q ss_pred CCCccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCCC-cccccccCC-CcEEEEEcCCCCcHHHHHHHH
Q 023354 29 HGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP-ILSRNFNER-AFTVGIGGPVGTGKTALMLAL 101 (283)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L 101 (283)
.....+..+..+..+....+.|.-|.....+.+.. ++...++. -..+.+.-+ -.-|+|+|++|||||||||+|
T Consensus 100 ~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~L 179 (390)
T PRK12298 100 DTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAV 179 (390)
T ss_pred CCCcEEEEeccCCcEEEEecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHH
Confidence 34456777888888888888888666444433322 22211221 111222222 345999999999999999999
Q ss_pred HhcccCCCcEEEEeecCCCCCHHHHHHhccccCC---chHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCC
Q 023354 102 CKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE---ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCES 178 (283)
Q Consensus 102 ~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q---~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eS 178 (283)
++.- + . +...+.++. ...+|++.. ..+.+++++|....... .
T Consensus 180 t~~k-~----~-vs~~p~TT~----~p~~Giv~~~~~~~i~~vDtPGi~~~a~~-------------------------~ 224 (390)
T PRK12298 180 SAAK-P----K-VADYPFTTL----VPNLGVVRVDDERSFVVADIPGLIEGASE-------------------------G 224 (390)
T ss_pred hCCc-c----c-ccCCCCCcc----CcEEEEEEeCCCcEEEEEeCCCccccccc-------------------------h
Confidence 9842 1 1 222222221 123444321 12345566665321100 0
Q ss_pred chHHHHHHHHHHhcCCcEEEEeCCCC--CCc-------hhh---cCC-cccccCEEEEEcCCcccccCChHHHHhHHHHh
Q 023354 179 GGDNLAANFSRELADYIIYIIDVSGG--DKI-------PRK---GGP-GITQADLLVINKTDLASAIGADLAVMERDALR 245 (283)
Q Consensus 179 gGq~q~~~ia~al~~~~l~llDpt~g--~~l-------~~~---~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~ 245 (283)
.|...+..-...-++.+++|+|.+.. .+. ..+ +.. ....+..||+||+|++... ...+.+ ..+.+
T Consensus 225 ~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-el~~~l-~~l~~ 302 (390)
T PRK12298 225 AGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-EAEERA-KAIVE 302 (390)
T ss_pred hhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-HHHHHH-HHHHH
Confidence 01111111112234678889996621 111 111 100 1235669999999986431 111222 22233
Q ss_pred hcCC-CCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 246 MRDG-GPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 246 ~~~~-~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
.... .+++++||+++.|+++|+++|...+++
T Consensus 303 ~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 303 ALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 3333 478999999999999999999887754
No 424
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.08 E-value=9.4e-10 Score=88.88 Aligned_cols=75 Identities=27% Similarity=0.372 Sum_probs=51.1
Q ss_pred hcCCcEEEEeCCCCCCch--hhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHH
Q 023354 191 LADYIIYIIDVSGGDKIP--RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN 268 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~--~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~ 268 (283)
-++..++++|++...... ............+++||.|+...... .......+++.+|++++.|+++|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~---------~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL---------LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc---------ccccCCCceEEEECCCCCCHHHHHH
Confidence 456789999987532111 11111234567999999998765321 2233467899999999999999999
Q ss_pred HHHHHH
Q 023354 269 HILQAW 274 (283)
Q Consensus 269 ~l~~~~ 274 (283)
+|...+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 987653
No 425
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.07 E-value=9.8e-11 Score=96.29 Aligned_cols=147 Identities=22% Similarity=0.302 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccC--CchHHHHHhCCCCCCChHHHHHHHHH
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP--EERIRAVETGGCPHAAIREDISINLG 160 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~--q~~~~~i~~~g~~~~~~~~~~~~~~~ 160 (283)
.|+|+|.+++|||||+|+|+|.. . ..++-++++.+ ...|.+. .....+++++|.......
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-----~-~v~n~pG~Tv~----~~~g~~~~~~~~~~lvDlPG~ysl~~~-------- 63 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-----Q-KVGNWPGTTVE----KKEGIFKLGDQQVELVDLPGIYSLSSK-------- 63 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-----E-EEEESTTSSSE----EEEEEEEETTEEEEEEE----SSSSSS--------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-----c-eecCCCCCCee----eeeEEEEecCceEEEEECCCcccCCCC--------
Confidence 58999999999999999999963 2 23444554432 1222221 233456667764322110
Q ss_pred HHHHccccccCCCcccCCchHHHHHHHH---HHhcCCcEEEEeCCCCCC---chhhcCCcccccCEEEEEcCCcccccCC
Q 023354 161 PLEELSNLFKADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDK---IPRKGGPGITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 161 ~l~~l~~~~~~d~~i~eSgGq~q~~~ia---~al~~~~l~llDpt~g~~---l~~~~~~~i~~ad~ivi~K~g~i~~~g~ 234 (283)
| +..+++.. ..-.|.+++++|++.... +..+. ......-.+++||+|.+...|-
T Consensus 64 -----------------s--~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql-~e~g~P~vvvlN~~D~a~~~g~ 123 (156)
T PF02421_consen 64 -----------------S--EEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQL-LELGIPVVVVLNKMDEAERKGI 123 (156)
T ss_dssp -----------------S--HHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHH-HHTTSSEEEEEETHHHHHHTTE
T ss_pred -----------------C--cHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEEeCHHHHHHcCC
Confidence 0 01111111 112357889999886321 10110 1123455999999999987664
Q ss_pred hHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHH
Q 023354 235 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 270 (283)
Q Consensus 235 ~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l 270 (283)
..+ ...++...+.|++++||+++.|+++|++.+
T Consensus 124 ~id---~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 124 EID---AEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EE----HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred EEC---HHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 332 112222347899999999999999999875
No 426
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.05 E-value=1.6e-09 Score=92.60 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=47.8
Q ss_pred cCCcEEEEeCCCCCCchh-----hcCCcc---cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIPR-----KGGPGI---TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~-----~~~~~i---~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++.+++++|.+....... .....+ ...-.+|+||.|+.... ... . .......+++++|++++.|+
T Consensus 121 ~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~--~~~---~--~~~~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 121 ADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE--ELE---E--RLEAGRPDAVFISAKTGEGL 193 (204)
T ss_pred CCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH--HHH---H--HhhcCCCceEEEEcCCCCCH
Confidence 467899999765432110 000011 23458999999986542 111 1 12234568999999999999
Q ss_pred HHHHHHHHHH
Q 023354 264 EEIVNHILQA 273 (283)
Q Consensus 264 ~~l~~~l~~~ 273 (283)
++++++|...
T Consensus 194 ~~l~~~L~~~ 203 (204)
T cd01878 194 DELLEAIEEL 203 (204)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 427
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.05 E-value=1.9e-09 Score=99.41 Aligned_cols=208 Identities=18% Similarity=0.236 Sum_probs=108.6
Q ss_pred CCccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCCC-cccccccCC-CcEEEEEcCCCCcHHHHHHHHH
Q 023354 30 GDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP-ILSRNFNER-AFTVGIGGPVGTGKTALMLALC 102 (283)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~ 102 (283)
....+..+.++..+......|.-|.....+.+.. +...-++. -..+.+.-+ -.-|+|+|.++|||||||++|+
T Consensus 100 ~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls 179 (335)
T PRK12299 100 TGELIADLTEHGQRFLVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVS 179 (335)
T ss_pred CCcEEEEcCCCCcEEEEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHH
Confidence 3456677777777777778777666443333222 11111111 112222323 4579999999999999999998
Q ss_pred hcccCCCcEEEEeecCCCCCHHHHHHhccccCC---chHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCc
Q 023354 103 KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE---ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESG 179 (283)
Q Consensus 103 g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q---~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSg 179 (283)
+.- |. +......+.. ..+|++.- ..+.+++++|..... +-
T Consensus 180 ~a~-~~----va~ypfTT~~-----p~~G~v~~~~~~~~~i~D~PGli~ga---------------------------~~ 222 (335)
T PRK12299 180 AAK-PK----IADYPFTTLH-----PNLGVVRVDDYKSFVIADIPGLIEGA---------------------------SE 222 (335)
T ss_pred cCC-Cc----cCCCCCceeC-----ceEEEEEeCCCcEEEEEeCCCccCCC---------------------------Cc
Confidence 742 21 1111111111 12232210 112234444432110 11
Q ss_pred hHHHHHHHHHHh--cCCcEEEEeCCCCCC---ch---hh---cCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhhc
Q 023354 180 GDNLAANFSREL--ADYIIYIIDVSGGDK---IP---RK---GGP-GITQADLLVINKTDLASAIGADLAVMERDALRMR 247 (283)
Q Consensus 180 Gq~q~~~ia~al--~~~~l~llDpt~g~~---l~---~~---~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~ 247 (283)
+......+.+.+ ++..|+|+|.+.... +. .+ +.. ....+-.||+||+|++.......+..... .. .
T Consensus 223 ~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~-~~-~ 300 (335)
T PRK12299 223 GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE-LA-A 300 (335)
T ss_pred cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH-HH-h
Confidence 111112222222 457899999775321 11 11 111 12456689999999865421111112111 11 2
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 248 DGGPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 248 ~~~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
...+++++||++++|+++++++|...+..
T Consensus 301 ~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 301 LGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34689999999999999999999887754
No 428
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.05 E-value=2.7e-10 Score=93.12 Aligned_cols=141 Identities=22% Similarity=0.242 Sum_probs=87.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HHHH-Hhcc--ccCCchHHHHH-h-CCCCCCChHHHH
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFL-MRNG--ALPEERIRAVE-T-GGCPHAAIREDI 155 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~~~-~~ig--~v~q~~~~~i~-~-~g~~~~~~~~~~ 155 (283)
+++++|++||||||+++.++..+.+. +++.++..|+..... ..+. .++. -..+.+...+. . ++........
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSR-- 78 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccch--
Confidence 37899999999999999999988776 788888888754211 1110 0000 00000000000 0 0100000111
Q ss_pred HHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCC
Q 023354 156 SINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD 227 (283)
Q Consensus 156 ~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g 227 (283)
...+.++.+ ....+|.++.++.|-.+....+.+.+|..+++.-|..++.++..+..+++.||.+++||.|
T Consensus 79 -~~~~~~~~~-~~~~~D~iiIDtaG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 79 -ATPEVIRVL-DAAGFDVIIVETVGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred -hHHHHHHHH-HhcCCCEEEEECCccChhhhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEEEEeCCC
Confidence 112233333 2247999999988866666556667788999999987777777777888999999999976
No 429
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=8.8e-10 Score=104.12 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=105.6
Q ss_pred CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+......+.|.|....-.-+...++... -.+++++|+||+||||+++++.+.+.|. |-+.+.. +.++
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 5566667778877666434455555544 6789999999999999999999988876 5544332 3567
Q ss_pred cccCCchHHHHHh---------CCCCCCChHHHHHHHHHHHHHccccccC-CCccc-CCchHHHHHHHHHHhc-CCcEEE
Q 023354 131 GALPEERIRAVET---------GGCPHAAIREDISINLGPLEELSNLFKA-DLLLC-ESGGDNLAANFSRELA-DYIIYI 198 (283)
Q Consensus 131 g~v~q~~~~~i~~---------~g~~~~~~~~~~~~~~~~l~~l~~~~~~-d~~i~-eSgGq~q~~~ia~al~-~~~l~l 198 (283)
+|..|.-....+. ..+|.. .++ .....|..|++.... ...+. -||||+-|++||.... .|-++|
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~-~~e---e~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV 505 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGK-TEE---EIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV 505 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCC-CHH---HHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE
Confidence 7777764422211 111111 222 334577777766533 22233 3999999999997766 598999
Q ss_pred Ee-CCCCCCchh----------h-cCCc-c--------cccCEEEEEcCCcccc
Q 023354 199 ID-VSGGDKIPR----------K-GGPG-I--------TQADLLVINKTDLASA 231 (283)
Q Consensus 199 lD-pt~g~~l~~----------~-~~~~-i--------~~ad~ivi~K~g~i~~ 231 (283)
|| ||+.+|... . .+.. + ..|+.+++.+.|.+..
T Consensus 506 LDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 506 LDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred ecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 98 999765321 1 1110 0 4677788888887755
No 430
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.04 E-value=2.2e-09 Score=88.44 Aligned_cols=80 Identities=21% Similarity=0.405 Sum_probs=49.9
Q ss_pred cCCcEEEEeCCCC-CCc---hh---h---cCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354 192 ADYIIYIIDVSGG-DKI---PR---K---GGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG 260 (283)
Q Consensus 192 ~~~~l~llDpt~g-~~l---~~---~---~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g 260 (283)
++..++++|++.. ..+ .. . ... ....+-.+|+||.|+..... ..+.. ..........+++.+|++++
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-LFELL-KELLKELWGKPVFPISALTG 156 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-hHHHH-HHHHhhCCCCCEEEEecCCC
Confidence 5788999998765 111 11 0 111 11345689999999865422 22222 22222223567899999999
Q ss_pred CCHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQA 273 (283)
Q Consensus 261 ~gi~~l~~~l~~~ 273 (283)
.|++++++++.+.
T Consensus 157 ~gi~~l~~~i~~~ 169 (170)
T cd01898 157 EGLDELLRKLAEL 169 (170)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998753
No 431
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.02 E-value=2.7e-10 Score=117.57 Aligned_cols=167 Identities=18% Similarity=0.130 Sum_probs=117.2
Q ss_pred Cccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccC----CCcEEEEeecCCCCCHHHHHHhccccCCchH-------
Q 023354 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (283)
Q Consensus 71 ~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (283)
.+++++.- ++|+.+.++||+||||||||++|+|.+.. .|+|..++.+.....+ .+.++|.+|...
T Consensus 130 il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 130 ILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred eecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeEE
Confidence 45566655 45999999999999999999999997652 3689999988775544 456888888653
Q ss_pred -HHHHhC-CCCCC-------ChHHHHH-HHHHHHHHccccccCCCcccC------CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 139 -RAVETG-GCPHA-------AIREDIS-INLGPLEELSNLFKADLLLCE------SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 139 -~~i~~~-g~~~~-------~~~~~~~-~~~~~l~~l~~~~~~d~~i~e------SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
+-+++. .|... ..++... .....++.+++..-.|..++. |||||+|+.++..++ .+.++..|
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 223322 22111 1111111 344678888988888888876 999999999998887 46666666
Q ss_pred CCCCCCchh-------------hc------------CCcccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 VSGGDKIPR-------------KG------------GPGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 pt~g~~l~~-------------~~------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|+|.|-.. .. ...+..-|.|+++..|.+++.|+..+++.
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 898865210 00 11246789999999999999998766654
No 432
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.01 E-value=1.3e-09 Score=104.25 Aligned_cols=143 Identities=20% Similarity=0.094 Sum_probs=86.0
Q ss_pred ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.+.+..+...-|++......+.+|..+ |..+-|+||||||||+|++.|.|+.+-. |++..-... .+ +.+-
T Consensus 433 ~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~----~~----~~lf 504 (659)
T KOG0060|consen 433 AIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG----GP----KDLF 504 (659)
T ss_pred eEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccC----CC----CceE
Confidence 355555666655564445566888755 9999999999999999999999998755 776532211 01 3467
Q ss_pred ccCCchH-------HHHHhC---CCCCC--ChHHHHHHHHHHH--HHc-cccccCCCc-ccC-----CchHHHHHHHHHH
Q 023354 132 ALPEERI-------RAVETG---GCPHA--AIREDISINLGPL--EEL-SNLFKADLL-LCE-----SGGDNLAANFSRE 190 (283)
Q Consensus 132 ~v~q~~~-------~~i~~~---g~~~~--~~~~~~~~~~~~l--~~l-~~~~~~d~~-i~e-----SgGq~q~~~ia~a 190 (283)
||||.|. +++..+ ..+.. ...+++.+.++.+ ..+ .+..+.|.. ..+ |+|++||+++||.
T Consensus 505 flPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARL 584 (659)
T KOG0060|consen 505 FLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARL 584 (659)
T ss_pred EecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHH
Confidence 8888874 112111 11111 1112222222211 111 122344422 222 9999999999999
Q ss_pred hcC-CcEEEEe-CCCC
Q 023354 191 LAD-YIIYIID-VSGG 204 (283)
Q Consensus 191 l~~-~~l~llD-pt~g 204 (283)
+.. |.+.++| .|+.
T Consensus 585 fy~kPk~AiLDE~TSA 600 (659)
T KOG0060|consen 585 FYHKPKFAILDECTSA 600 (659)
T ss_pred HhcCCceEEeechhhh
Confidence 874 9999999 5554
No 433
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.01 E-value=7.8e-09 Score=82.88 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=48.4
Q ss_pred cCCcEEEEeCCCCCCchh-hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 270 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~-~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l 270 (283)
++..++++|.+....... ........+..+++||+|+.... ...+...+.. +.....+++++|+++|.|++++++++
T Consensus 63 ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 63 ADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEAD-VDIERAKELL-ETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcc-cCHHHHHHHH-HHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 468899999776542211 11111123568899999986431 2223323222 23334478999999999999999887
Q ss_pred H
Q 023354 271 L 271 (283)
Q Consensus 271 ~ 271 (283)
.
T Consensus 141 ~ 141 (142)
T TIGR02528 141 N 141 (142)
T ss_pred h
Confidence 4
No 434
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.99 E-value=5.2e-09 Score=100.70 Aligned_cols=207 Identities=18% Similarity=0.192 Sum_probs=110.5
Q ss_pred CccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCCC-cccccccCC-CcEEEEEcCCCCcHHHHHHHHHh
Q 023354 31 DSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP-ILSRNFNER-AFTVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g 103 (283)
...+..+..+..+....+.|.-|.....+.+.. +....++. -..+.+.-+ -.-|+|+|.++|||||||+.|++
T Consensus 102 ~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~ 181 (500)
T PRK12296 102 GEVLADLVGAGTRFVAAAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSA 181 (500)
T ss_pred CcEEeeeccCCCEEEEEccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhc
Confidence 356777888888888888877666444433322 11111111 122233323 45799999999999999999998
Q ss_pred cccCCCcEEEEeecCCCCCHHHHHHhccccC--CchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchH
Q 023354 104 FLRDKYSLAAVTNDIFTKEDGEFLMRNGALP--EERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD 181 (283)
Q Consensus 104 ~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~--q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq 181 (283)
.- | .+......+.. ..+|++. ...+.+++++|..... |.|.
T Consensus 182 ak-p----kIadypfTTl~-----P~lGvv~~~~~~f~laDtPGliega---------------------------s~g~ 224 (500)
T PRK12296 182 AK-P----KIADYPFTTLV-----PNLGVVQAGDTRFTVADVPGLIPGA---------------------------SEGK 224 (500)
T ss_pred CC-c----cccccCccccc-----ceEEEEEECCeEEEEEECCCCcccc---------------------------chhh
Confidence 52 2 11111112211 1233321 1112234455532110 1111
Q ss_pred HHHHHHHHH--hcCCcEEEEeCCCC---CC----ch---h---hcC----------CcccccCEEEEEcCCcccccCChH
Q 023354 182 NLAANFSRE--LADYIIYIIDVSGG---DK----IP---R---KGG----------PGITQADLLVINKTDLASAIGADL 236 (283)
Q Consensus 182 ~q~~~ia~a--l~~~~l~llDpt~g---~~----l~---~---~~~----------~~i~~ad~ivi~K~g~i~~~g~~~ 236 (283)
.....+.+. -++.+|+|+|.+.. .+ +. . .+. ......-+||+||+|+.... ...
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-el~ 303 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-ELA 303 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-HHH
Confidence 111112222 24678888997642 11 11 0 111 11234568999999986431 112
Q ss_pred HHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 237 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 237 e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
+.+...+.. .+.+++.+|++++.|+++|+.+|...++..
T Consensus 304 e~l~~~l~~--~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 304 EFVRPELEA--RGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred HHHHHHHHH--cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 222222222 256899999999999999999998877654
No 435
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.99 E-value=2.2e-09 Score=102.42 Aligned_cols=86 Identities=26% Similarity=0.393 Sum_probs=57.5
Q ss_pred HhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccCCC
Q 023354 190 ELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHGLG 262 (283)
Q Consensus 190 al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g~g 262 (283)
..+|..|+|+|++.+...+... ......+..+++||+|++.. ...+.+.+.+... .+..|++++||++|.|
T Consensus 254 ~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~--~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~g 331 (435)
T PRK00093 254 ERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE--KTMEEFKKELRRRLPFLDYAPIVFISALTGQG 331 (435)
T ss_pred HHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH--HHHHHHHHHHHHhcccccCCCEEEEeCCCCCC
Confidence 3457899999988764322111 00113456899999998732 2233333333332 3568999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 023354 263 VEEIVNHILQAWEAS 277 (283)
Q Consensus 263 i~~l~~~l~~~~~~~ 277 (283)
++++++++...++.+
T Consensus 332 v~~l~~~i~~~~~~~ 346 (435)
T PRK00093 332 VDKLLEAIDEAYENA 346 (435)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877654
No 436
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.98 E-value=5.2e-09 Score=85.69 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=53.7
Q ss_pred hcCCcEEEEeCCCCCCchh----hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcC---CCCeEEEEeccCCCH
Q 023354 191 LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRD---GGPFIFAQVKHGLGV 263 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~~----~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~---~~~i~~isa~~g~gi 263 (283)
-++..++++|+........ ........+..+++||.|+........+...+.+.+..+ ..+++.+|++++.|+
T Consensus 84 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 163 (174)
T cd01895 84 RADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGV 163 (174)
T ss_pred hcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCH
Confidence 4578899999765422111 000112345689999999875532233333444444433 578999999999999
Q ss_pred HHHHHHHHHHH
Q 023354 264 EEIVNHILQAW 274 (283)
Q Consensus 264 ~~l~~~l~~~~ 274 (283)
+++++++...|
T Consensus 164 ~~~~~~l~~~~ 174 (174)
T cd01895 164 DKLFDAIDEVY 174 (174)
T ss_pred HHHHHHHHHhC
Confidence 99999987653
No 437
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.97 E-value=3e-09 Score=88.41 Aligned_cols=150 Identities=18% Similarity=0.164 Sum_probs=82.1
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHH
Q 023354 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRE 153 (283)
Q Consensus 74 ~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~ 153 (283)
...+..+..+++|+|++|||||||++.+++...+. .. ..+|+.. ..
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~------------~~-----~t~g~~~--------------~~--- 52 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDT------------IS-----PTLGFQI--------------KT--- 52 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCC------------cC-----Cccccce--------------EE---
Confidence 34444455689999999999999999998741110 00 0011100 00
Q ss_pred HHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCchh-------hcC--CcccccCEE
Q 023354 154 DISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR-------KGG--PGITQADLL 221 (283)
Q Consensus 154 ~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l~~-------~~~--~~i~~ad~i 221 (283)
+ ........+++.+|+...-.+.... ++..++++|.+....+.. ... .....+-.|
T Consensus 53 -----------~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ii 120 (173)
T cd04154 53 -----------L-EYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLI 120 (173)
T ss_pred -----------E-EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence 0 0001222344455654322222222 357899999776421111 000 011334589
Q ss_pred EEEcCCcccccCChHHHHhHHHHh---hcCCCCeEEEEeccCCCHHHHHHHHH
Q 023354 222 VINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVKHGLGVEEIVNHIL 271 (283)
Q Consensus 222 vi~K~g~i~~~g~~~e~~~~~~~~---~~~~~~i~~isa~~g~gi~~l~~~l~ 271 (283)
++||.|+.... ..+.+...+.. .....+++.+||++|.|++++++++.
T Consensus 121 v~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 121 LANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred EEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 99999986432 22333222211 12345799999999999999999885
No 438
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.96 E-value=9.1e-09 Score=84.09 Aligned_cols=80 Identities=21% Similarity=0.158 Sum_probs=49.6
Q ss_pred CCcEEEEeCCCCCCchh---h---c--CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 193 DYIIYIIDVSGGDKIPR---K---G--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~~---~---~--~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
+..++++|++....+.. . . ...-...-.+++||.|+........+......... +.+++++|+++|.|+.
T Consensus 75 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~ 152 (163)
T cd01860 75 AAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADEN--GLLFFETSAKTGENVN 152 (163)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHc--CCEEEEEECCCCCCHH
Confidence 57899999876532211 0 0 00012334788999997743222333333333322 3779999999999999
Q ss_pred HHHHHHHHHH
Q 023354 265 EIVNHILQAW 274 (283)
Q Consensus 265 ~l~~~l~~~~ 274 (283)
+++++|.+..
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd01860 153 ELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 439
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.96 E-value=8.5e-09 Score=97.77 Aligned_cols=204 Identities=17% Similarity=0.187 Sum_probs=109.2
Q ss_pred CCccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCCC-cccccccCC-CcEEEEEcCCCCcHHHHHHHHH
Q 023354 30 GDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP-ILSRNFNER-AFTVGIGGPVGTGKTALMLALC 102 (283)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~ 102 (283)
....+..+..+..+....+.|.-|.....+.+.. ++....+. -..+.+.-+ -.-|+|+|.++|||||||++|+
T Consensus 100 ~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt 179 (424)
T PRK12297 100 TGEVIADLVEPGQEVVVAKGGRGGRGNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVS 179 (424)
T ss_pred CCcEEeeeccCCcEEEEECCCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHH
Confidence 3456777888888888888888776544444322 22212221 112222223 3479999999999999999999
Q ss_pred hcccCCCcEEEEeecCCCCCHHHHHHhccccC---CchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCc
Q 023354 103 KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP---EERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESG 179 (283)
Q Consensus 103 g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~---q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSg 179 (283)
+.- | .+......+..+ .+|++. ...+.+++++|..... |-
T Consensus 180 ~ak-~----kIa~ypfTTl~P-----nlG~v~~~~~~~~~laD~PGliega---------------------------~~ 222 (424)
T PRK12297 180 NAK-P----KIANYHFTTLVP-----NLGVVETDDGRSFVMADIPGLIEGA---------------------------SE 222 (424)
T ss_pred cCC-C----ccccCCcceece-----EEEEEEEeCCceEEEEECCCCcccc---------------------------cc
Confidence 842 1 111111111111 223221 1122334455542110 11
Q ss_pred hHHHHHHHHHH--hcCCcEEEEeCCCC--CCch-------h---hcCC-cccccCEEEEEcCCcccccCChHHHHhHHHH
Q 023354 180 GDNLAANFSRE--LADYIIYIIDVSGG--DKIP-------R---KGGP-GITQADLLVINKTDLASAIGADLAVMERDAL 244 (283)
Q Consensus 180 Gq~q~~~ia~a--l~~~~l~llDpt~g--~~l~-------~---~~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~ 244 (283)
|......+.+. -++.+|+|+|.+.. .+.. . .+.. .....-.||+||+|+. . ..+.+.. +.
T Consensus 223 ~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~-~---~~e~l~~-l~ 297 (424)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP-E---AEENLEE-FK 297 (424)
T ss_pred cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc-C---CHHHHHH-HH
Confidence 11111112222 24678999997642 1111 1 1111 1245668999999962 2 2222222 22
Q ss_pred hhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 245 RMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 245 ~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
+... .+++++||++++|+++|+++|...+..
T Consensus 298 ~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 298 EKLG-PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred HHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2222 689999999999999999999877654
No 440
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.95 E-value=4.5e-09 Score=85.96 Aligned_cols=96 Identities=21% Similarity=0.204 Sum_probs=56.8
Q ss_pred ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354 175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDA 243 (283)
Q Consensus 175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~ 243 (283)
+++++|+.....+.+.. ++..++++|++....+ .... ...-..+-.++.||.|.........+......
T Consensus 53 l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~ 132 (161)
T cd04113 53 IWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFA 132 (161)
T ss_pred EEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHH
Confidence 44556654433333333 2578999998875321 1110 00113345889999998754222223322222
Q ss_pred HhhcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354 244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQ 272 (283)
Q Consensus 244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~ 272 (283)
.. .+.+++.+|++++.|++++++++.+
T Consensus 133 ~~--~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 133 QE--NGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HH--cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 22 3478999999999999999999865
No 441
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.95 E-value=4.9e-09 Score=99.79 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=57.4
Q ss_pred hcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhc---CCCCeEEEEeccCCCH
Q 023354 191 LADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVKHGLGV 263 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~---~~~~i~~isa~~g~gi 263 (283)
-+|..|+|+|++.+....... ......+..+++||+|++. .....+.+...+...+ .+.+++++||++|.|+
T Consensus 254 ~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v 332 (429)
T TIGR03594 254 RADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGV 332 (429)
T ss_pred hCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCH
Confidence 457899999988764322110 0011346699999999982 1122334444444333 4679999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023354 264 EEIVNHILQAWEAS 277 (283)
Q Consensus 264 ~~l~~~l~~~~~~~ 277 (283)
+++++++...++.+
T Consensus 333 ~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 333 DKLLDAIDEVYENA 346 (429)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998877644
No 442
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.95 E-value=6.7e-09 Score=85.42 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=48.5
Q ss_pred cCCcEEEEeCCCCCCc--hh------hcCCcc-cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI--PR------KGGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l--~~------~~~~~i-~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
.+..|+++|++..... .. ...... ...-.+++||.|..... ....... . ......+++.+||++|.|
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--~~~~~~~-~-~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE--DLSEIEE-E-EELEGEEVLKISTLTEEG 155 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh--hHHHHHH-h-hhhccCceEEEEecccCC
Confidence 4678899998753211 10 011111 34558999999986431 2111111 1 222457899999999999
Q ss_pred HHHHHHHHHHH
Q 023354 263 VEEIVNHILQA 273 (283)
Q Consensus 263 i~~l~~~l~~~ 273 (283)
++++++++...
T Consensus 156 i~~l~~~l~~~ 166 (168)
T cd01897 156 VDEVKNKACEL 166 (168)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 443
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.95 E-value=5.4e-09 Score=85.45 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=49.3
Q ss_pred cCCcEEEEeCCCCC---Cchh-------hcCC---cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEec
Q 023354 192 ADYIIYIIDVSGGD---KIPR-------KGGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK 258 (283)
Q Consensus 192 ~~~~l~llDpt~g~---~l~~-------~~~~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~ 258 (283)
++..|+++|++... .+.. .... .....-.+|.||.|+........+....... . .+.+++.+|++
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~ 150 (168)
T cd04119 73 TQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-S-KGFKYFETSAC 150 (168)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-H-cCCeEEEEECC
Confidence 35789999987632 1111 1110 1123458999999986322122333322222 2 23678999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 023354 259 HGLGVEEIVNHILQAW 274 (283)
Q Consensus 259 ~g~gi~~l~~~l~~~~ 274 (283)
++.|+++++++|...+
T Consensus 151 ~~~gi~~l~~~l~~~l 166 (168)
T cd04119 151 TGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987643
No 444
>PRK13768 GTPase; Provisional
Probab=98.95 E-value=1.3e-08 Score=90.45 Aligned_cols=186 Identities=20% Similarity=0.220 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeecCCCCCHHHHHHhccccCCchH-------H-HHHhCCCCCCChH
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFTKEDGEFLMRNGALPEERI-------R-AVETGGCPHAAIR 152 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~-~i~~~g~~~~~~~ 152 (283)
.++.+.|+.||||||+...++..+...| ++.++..|+.... +++.+.... . +...+..+.....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~-------~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~ 75 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEY-------LPYTPDFDVRDYVTAREIMKKYGLGPNGALI 75 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcccc-------CCCCCCcchhhheeHHHHHHHcCCCCchHHH
Confidence 3688999999999999999998776554 6777777765311 111111100 0 1111222322111
Q ss_pred HH---HHHHHHHHHHccccccCCCcccCCchHHHHHH-------HHHHh----cCCcEEEEeCCCCCCch---hhc----
Q 023354 153 ED---ISINLGPLEELSNLFKADLLLCESGGDNLAAN-------FSREL----ADYIIYIIDVSGGDKIP---RKG---- 211 (283)
Q Consensus 153 ~~---~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~-------ia~al----~~~~l~llDpt~g~~l~---~~~---- 211 (283)
.. .......+.........+.++++..|+..... +.+.+ .+.+++|+|.+.+.... ...
T Consensus 76 ~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~ 155 (253)
T PRK13768 76 ASVDLLLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLAL 155 (253)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHH
Confidence 00 11111122221122345888888888644221 22333 34789999975542211 000
Q ss_pred --CCcccccCEEEEEcCCcccccCChHHHHhHH----------------------------HHhhcCCCCeEEEEeccCC
Q 023354 212 --GPGITQADLLVINKTDLASAIGADLAVMERD----------------------------ALRMRDGGPFIFAQVKHGL 261 (283)
Q Consensus 212 --~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~----------------------------~~~~~~~~~i~~isa~~g~ 261 (283)
.......-.+|+||.|++... ..+.+.+. +.+..+..+++.+|++++.
T Consensus 156 ~~~~~~~~~~i~v~nK~D~~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~ 233 (253)
T PRK13768 156 SVQLRLGLPQIPVLNKADLLSEE--ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE 233 (253)
T ss_pred HHHHHcCCCEEEEEEhHhhcCch--hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc
Confidence 001244668999999998652 22222221 1122344689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 023354 262 GVEEIVNHILQAWEA 276 (283)
Q Consensus 262 gi~~l~~~l~~~~~~ 276 (283)
|+++|+++|.+.++.
T Consensus 234 gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 234 GFDELYAAIQEVFCG 248 (253)
T ss_pred CHHHHHHHHHHHcCC
Confidence 999999999987753
No 445
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.94 E-value=8.1e-09 Score=95.14 Aligned_cols=203 Identities=18% Similarity=0.232 Sum_probs=106.0
Q ss_pred ccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCCC-cccccccCC-CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 32 STATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP-ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
..+..+.++..+......|.-|.....+.+.. +....++. -..+.+.-+ -.-|+|+|.+||||||||++|++.
T Consensus 101 ~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~ 180 (329)
T TIGR02729 101 ELLADLTEPGQRFVVAKGGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAA 180 (329)
T ss_pred cEEeEeccCCcEEEecCCCCCCCCcccccCccCCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcC
Confidence 56677777777777788877666443333221 11111111 112223323 457999999999999999999884
Q ss_pred ccCCCcEEEEeecCCCCCHHHHHHhccccC--C-chHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchH
Q 023354 105 LRDKYSLAAVTNDIFTKEDGEFLMRNGALP--E-ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD 181 (283)
Q Consensus 105 ~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~--q-~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq 181 (283)
.. .+...++.+.. ..+|++. . ..+.+++++|..... +.+.
T Consensus 181 ~~-----~va~y~fTT~~-----p~ig~v~~~~~~~~~i~D~PGli~~a---------------------------~~~~ 223 (329)
T TIGR02729 181 KP-----KIADYPFTTLV-----PNLGVVRVDDGRSFVIADIPGLIEGA---------------------------SEGA 223 (329)
T ss_pred Cc-----cccCCCCCccC-----CEEEEEEeCCceEEEEEeCCCcccCC---------------------------cccc
Confidence 21 11111111111 1223221 0 111233444432110 1111
Q ss_pred HHHHHHHHHh--cCCcEEEEeCCCCC--C----ch---h---hcCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhh
Q 023354 182 NLAANFSREL--ADYIIYIIDVSGGD--K----IP---R---KGGP-GITQADLLVINKTDLASAIGADLAVMERDALRM 246 (283)
Q Consensus 182 ~q~~~ia~al--~~~~l~llDpt~g~--~----l~---~---~~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~ 246 (283)
.....+.+.+ ++.+++|+|.+... + +. . .+.. ....+-.||+||+|++.. ...+.+.+.+.+.
T Consensus 224 gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~ 301 (329)
T TIGR02729 224 GLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKELKKA 301 (329)
T ss_pred cHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHHHHH
Confidence 1112222222 46789999976531 1 11 1 1111 123456899999998654 2222222333322
Q ss_pred cCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354 247 RDGGPFIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 247 ~~~~~i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
. +.+++++||++++|+++++++|...+
T Consensus 302 ~-~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 L-GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred c-CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 2 46899999999999999999997654
No 446
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.94 E-value=6.9e-09 Score=100.15 Aligned_cols=86 Identities=22% Similarity=0.159 Sum_probs=55.9
Q ss_pred hcCCcEEEEeCCCCCCchhhc-C---CcccccCEEEEEcCCcccccCChHHHHhHHHH---hhcCCCCeEEEEeccCCCH
Q 023354 191 LADYIIYIIDVSGGDKIPRKG-G---PGITQADLLVINKTDLASAIGADLAVMERDAL---RMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~~~~-~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~---~~~~~~~i~~isa~~g~gi 263 (283)
-++..|+++|++.+...+... . .....+-.||+||+|++.. .....+...+. ....+.|++++||++|.|+
T Consensus 293 ~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv 370 (472)
T PRK03003 293 AAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE--DRRYYLEREIDRELAQVPWAPRVNISAKTGRAV 370 (472)
T ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh--hHHHHHHHHHHHhcccCCCCCEEEEECCCCCCH
Confidence 357899999988764322110 0 0013355899999998743 12222222222 2234679999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 023354 264 EEIVNHILQAWEAST 278 (283)
Q Consensus 264 ~~l~~~l~~~~~~~~ 278 (283)
+++++.+...++.+.
T Consensus 371 ~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 371 DKLVPALETALESWD 385 (472)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998876543
No 447
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.93 E-value=7.4e-09 Score=84.42 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=56.3
Q ss_pred ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---Cchhh---cC---CcccccCEEEEEcCCcccccCChHHHHhHH
Q 023354 175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRK---GG---PGITQADLLVINKTDLASAIGADLAVMERD 242 (283)
Q Consensus 175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~---~~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~ 242 (283)
++++.|+.....++... ++..++++|.+... .+... .. .....+-.+++||.|+........+.....
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~ 131 (164)
T cd04139 52 ILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANL 131 (164)
T ss_pred EEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHH
Confidence 34455544333333222 35678888865431 11111 00 112445689999999875211222322222
Q ss_pred HHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 243 ALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 243 ~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.. ..+.+++.+|++++.|++++++++...+.
T Consensus 132 ~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 132 AR--QWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HH--HhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22 23468999999999999999999986653
No 448
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.93 E-value=1.2e-08 Score=83.08 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=47.3
Q ss_pred hcCCcEEEEeCCCCCCch--hh--cCCcccc-cCEEEEEcCCcccccC--ChHHHHhHHHHhh-cCCCCeEEEEeccCCC
Q 023354 191 LADYIIYIIDVSGGDKIP--RK--GGPGITQ-ADLLVINKTDLASAIG--ADLAVMERDALRM-RDGGPFIFAQVKHGLG 262 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~--~~--~~~~i~~-ad~ivi~K~g~i~~~g--~~~e~~~~~~~~~-~~~~~i~~isa~~g~g 262 (283)
-++..++++|.+.+.... .. ....... .-.+++||.|+..... ...+.+.+.+... ....+++++|++++.|
T Consensus 74 ~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 74 GIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred cCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 357899999987632111 00 0000112 3479999999864310 0011112222211 1357899999999999
Q ss_pred HHHHHHHHHH
Q 023354 263 VEEIVNHILQ 272 (283)
Q Consensus 263 i~~l~~~l~~ 272 (283)
++++++++..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 449
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.93 E-value=4.5e-09 Score=95.06 Aligned_cols=213 Identities=17% Similarity=0.188 Sum_probs=121.6
Q ss_pred ccccCCCCccceeeecCCCCcccCCCCCCCccccccCCCCCCCCCCCCc---------ccccccCC-CcEEEEEcCCCCc
Q 023354 24 THEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPI---------LSRNFNER-AFTVGIGGPVGTG 93 (283)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-g~~v~ilG~nGsG 93 (283)
...|....+.+.-++.+..+......|..|....++.++. .+.|.. ..+.+.-+ -.=|+|+|.++||
T Consensus 95 ~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks~~---nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaG 171 (369)
T COG0536 95 VVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSSV---NRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAG 171 (369)
T ss_pred EEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcCcc---cCCcccCCCCCCCceEEEEEEEeeecccccccCCCCc
Confidence 3445555677777888888888888887666444433333 332221 12222222 3358999999999
Q ss_pred HHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCC---chHHHHHhCCCCCCChHHHHHHHHHHHHHcccccc
Q 023354 94 KTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE---ERIRAVETGGCPHAAIREDISINLGPLEELSNLFK 170 (283)
Q Consensus 94 KSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q---~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~ 170 (283)
|||||+.++..-+ .|..-++.++.+ ++|+|.. +++.+-+.+|.
T Consensus 172 KSTlls~vS~AkP-----KIadYpFTTL~P-----nLGvV~~~~~~sfv~ADIPGL------------------------ 217 (369)
T COG0536 172 KSTLLSAVSAAKP-----KIADYPFTTLVP-----NLGVVRVDGGESFVVADIPGL------------------------ 217 (369)
T ss_pred HHHHHHHHhhcCC-----cccCCccccccC-----cccEEEecCCCcEEEecCccc------------------------
Confidence 9999999988532 223333333322 4555431 11112222222
Q ss_pred CCCcccCCchHHHHHHHHHHhc--CCcEEEEeCCCCC--Cchh----------hcC-CcccccCEEEEEcCCcccccCCh
Q 023354 171 ADLLLCESGGDNLAANFSRELA--DYIIYIIDVSGGD--KIPR----------KGG-PGITQADLLVINKTDLASAIGAD 235 (283)
Q Consensus 171 ~d~~i~eSgGq~q~~~ia~al~--~~~l~llDpt~g~--~l~~----------~~~-~~i~~ad~ivi~K~g~i~~~g~~ 235 (283)
+-..|.|--.=..+.|-+- ...+.|+|.+..+ +..+ ++. ......-.|++||.|.+... +.
T Consensus 218 ---IEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~ 293 (369)
T COG0536 218 ---IEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EE 293 (369)
T ss_pred ---ccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HH
Confidence 1111444333333333333 3578889955432 2111 111 12355668999999966542 34
Q ss_pred HHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 236 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 236 ~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
.+.+.+.+.+...+...+++|+.+++|+++|+..+.+.++..
T Consensus 294 ~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 294 LEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred HHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 555556666655565555599999999999999988877654
No 450
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.93 E-value=7e-09 Score=85.11 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=50.5
Q ss_pred hcCCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCChHHHHhHHHHh--------hcCCCCeEEEEec
Q 023354 191 LADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALR--------MRDGGPFIFAQVK 258 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~--------~~~~~~i~~isa~ 258 (283)
.++..++++|++.+...... ..........+++||.|+.... . +.+...+.. .....+++.+|++
T Consensus 73 ~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T cd01887 73 LTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN--P-ERVKNELSELGLQGEDEWGGDVQIVPTSAK 149 (168)
T ss_pred hcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc--H-HHHHHHHHHhhccccccccCcCcEEEeecc
Confidence 45788999998875321110 0011244568999999986431 1 111111111 1123589999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 023354 259 HGLGVEEIVNHILQAW 274 (283)
Q Consensus 259 ~g~gi~~l~~~l~~~~ 274 (283)
+|.|+++++++|....
T Consensus 150 ~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 150 TGEGIDDLLEAILLLA 165 (168)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999997754
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.92 E-value=5.7e-10 Score=85.81 Aligned_cols=62 Identities=26% Similarity=0.173 Sum_probs=51.1
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
.+++.++|..+ |++++|+||+|||||||+++++ .|++.+.+.++...+..+..+.+++++|.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~ 65 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL 65 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh
Confidence 46778888754 8999999999999999999987 68899999988776666666667777775
No 452
>COG2262 HflX GTPases [General function prediction only]
Probab=98.92 E-value=4.7e-09 Score=97.03 Aligned_cols=157 Identities=20% Similarity=0.165 Sum_probs=86.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL 159 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~ 159 (283)
.-+.|+|+|..+||||||+|.|++.-.. ..+.-+.+.++...+-.++ ......+-+|-|+...-.....+...
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~-----~~d~LFATLdpttR~~~l~--~g~~vlLtDTVGFI~~LP~~LV~AFk 263 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVY-----VADQLFATLDPTTRRIELG--DGRKVLLTDTVGFIRDLPHPLVEAFK 263 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCee-----ccccccccccCceeEEEeC--CCceEEEecCccCcccCChHHHHHHH
Confidence 3579999999999999999999975322 1222222333321111111 01111223344543322222222222
Q ss_pred HHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhc---------CCcccccCEEEEEcCCccc
Q 023354 160 GPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG---------GPGITQADLLVINKTDLAS 230 (283)
Q Consensus 160 ~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~---------~~~i~~ad~ivi~K~g~i~ 230 (283)
..|++. .-+|..+.|+|.+... +..+. ...-...-++++||.|++.
T Consensus 264 sTLEE~------------------------~~aDlllhVVDaSdp~-~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 264 STLEEV------------------------KEADLLLHVVDASDPE-ILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred HHHHHh------------------------hcCCEEEEEeecCChh-HHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 233332 1346789999977642 11110 0011345689999999986
Q ss_pred ccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 231 AIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 231 ~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
..- ....+....+ +.+++||++|.|++.|.+.|.....
T Consensus 319 ~~~-----~~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 319 DEE-----ILAELERGSP--NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred chh-----hhhhhhhcCC--CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 521 1122222222 5889999999999999999988765
No 453
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.92 E-value=5.8e-09 Score=105.39 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=57.0
Q ss_pred cCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHh---hcCCCCeEEEEeccCCCHH
Q 023354 192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~---~~~~~~i~~isa~~g~gi~ 264 (283)
++..++++|++.+...+... ......+-.||+||+|++.. ...+.+...+.. ..++.+++++||++|.|++
T Consensus 533 advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~--~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~ 610 (712)
T PRK09518 533 SELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE--FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTN 610 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh--hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHH
Confidence 56889999988764332110 00113466999999998753 223344433333 2356788999999999999
Q ss_pred HHHHHHHHHHHHh
Q 023354 265 EIVNHILQAWEAS 277 (283)
Q Consensus 265 ~l~~~l~~~~~~~ 277 (283)
++++.+.+.++.+
T Consensus 611 ~L~~~i~~~~~~~ 623 (712)
T PRK09518 611 RLAPAMQEALESW 623 (712)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887754
No 454
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.91 E-value=1.2e-09 Score=93.69 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=25.4
Q ss_pred CchHHHHHHHHHHhcCCcEEEEe-CCCCCCc
Q 023354 178 SGGDNLAANFSRELADYIIYIID-VSGGDKI 207 (283)
Q Consensus 178 SgGq~q~~~ia~al~~~~l~llD-pt~g~~l 207 (283)
|+|++|+..+++++.++.++++| |+++.+.
T Consensus 93 s~g~~~~~~i~~~~~~p~llllDEp~~glD~ 123 (200)
T cd03280 93 SSHMKNIARILQHADPDSLVLLDELGSGTDP 123 (200)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCCCH
Confidence 89999999999887788888888 8888654
No 455
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.91 E-value=8.9e-09 Score=82.93 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=45.9
Q ss_pred cCCcEEEEeCCCCCCch-------hhcCC--cccccCEEEEEcCCcccccCChHHHHhHHHHhh--cCCCCeEEEEeccC
Q 023354 192 ADYIIYIIDVSGGDKIP-------RKGGP--GITQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVKHG 260 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~-------~~~~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~--~~~~~i~~isa~~g 260 (283)
++.+++++|.+....+. ..... ....+-.+++||.|..... ...+......... ....+++.+|++++
T Consensus 68 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (159)
T cd04159 68 VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL-SVDELIEQMNLKSITDREVSCYSISCKEK 146 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc-CHHHHHHHhCcccccCCceEEEEEEeccC
Confidence 46788999977532211 00000 0123447889999976441 1122221111111 12356799999999
Q ss_pred CCHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQ 272 (283)
Q Consensus 261 ~gi~~l~~~l~~ 272 (283)
.|+++++++|.+
T Consensus 147 ~gi~~l~~~l~~ 158 (159)
T cd04159 147 TNIDIVLDWLIK 158 (159)
T ss_pred CChHHHHHHHhh
Confidence 999999999864
No 456
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.91 E-value=1.5e-08 Score=82.69 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=56.9
Q ss_pred cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hh------hcCCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354 174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PR------KGGPGITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
.+++++|+.....+.... ++..++++|++....+ .. +.......+..++.||.|+....... +....
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~-~~~~~ 130 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTR-EEGLK 130 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCH-HHHHH
Confidence 344455544333333333 3578999997764211 11 11111133458999999987332222 33333
Q ss_pred HHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354 242 DALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 242 ~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~ 273 (283)
.... ...+++++|+++|.|++++++++...
T Consensus 131 ~~~~--~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 131 FARK--HNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHH--cCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 2222 36789999999999999999988653
No 457
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.90 E-value=1e-08 Score=83.67 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=47.5
Q ss_pred cCCcEEEEeCCCCCC---chh------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDK---IPR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+.... +.. +.......+-.++.||.|+........+.... +.+ ..+.+++++||++|.|
T Consensus 73 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~ 150 (163)
T cd04136 73 GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQA-LAR-QWGCPFYETSAKSKIN 150 (163)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHH-HHH-HcCCeEEEecCCCCCC
Confidence 357888889765321 111 00011123447899999976432212222222 222 2347899999999999
Q ss_pred HHHHHHHHHHH
Q 023354 263 VEEIVNHILQA 273 (283)
Q Consensus 263 i~~l~~~l~~~ 273 (283)
+.++++++.+.
T Consensus 151 v~~l~~~l~~~ 161 (163)
T cd04136 151 VDEVFADLVRQ 161 (163)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 458
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.90 E-value=1.5e-08 Score=86.46 Aligned_cols=81 Identities=22% Similarity=0.126 Sum_probs=50.1
Q ss_pred CCcEEEEeCCCCCCch---hhcC----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354 193 DYIIYIIDVSGGDKIP---RKGG----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~---~~~~----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~ 265 (283)
+..++++|++....+. .... ..-...-.|+.||.|+........+....... . .+.+++++|+++|.|+++
T Consensus 80 ~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 80 HGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAG-Q-MGISLFETSAKENINVEE 157 (199)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHH-H-cCCEEEEEECCCCcCHHH
Confidence 4689999987643211 1110 00123447899999986542222222222222 2 347899999999999999
Q ss_pred HHHHHHHHHH
Q 023354 266 IVNHILQAWE 275 (283)
Q Consensus 266 l~~~l~~~~~ 275 (283)
++++|...+-
T Consensus 158 lf~~l~~~~~ 167 (199)
T cd04110 158 MFNCITELVL 167 (199)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 459
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.90 E-value=1.6e-08 Score=86.82 Aligned_cols=101 Identities=11% Similarity=0.115 Sum_probs=57.2
Q ss_pred CcccCCchHHHHHHHH-H--HhcCCcEEEEeCCCC-CCch--hhc--CCcccc-cCEEEEEcCCcccccCChHHHHhHHH
Q 023354 173 LLLCESGGDNLAANFS-R--ELADYIIYIIDVSGG-DKIP--RKG--GPGITQ-ADLLVINKTDLASAIGADLAVMERDA 243 (283)
Q Consensus 173 ~~i~eSgGq~q~~~ia-~--al~~~~l~llDpt~g-~~l~--~~~--~~~i~~-ad~ivi~K~g~i~~~g~~~e~~~~~~ 243 (283)
..++++.|+....... + .-+|..++++|++.+ .... ... ...... .-.|++||.|++.. ...+...+.+
T Consensus 85 i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~--~~~~~~~~~i 162 (203)
T cd01888 85 VSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE--EQALENYEQI 162 (203)
T ss_pred EEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH--HHHHHHHHHH
Confidence 3455666754332222 2 224788999998753 1111 000 000112 23679999998643 1112112222
Q ss_pred Hhhc-----CCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 244 LRMR-----DGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 244 ~~~~-----~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.+.. ...+++++|+++|.|+++++++|....+
T Consensus 163 ~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 163 KKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 2222 3568999999999999999999976543
No 460
>PRK14974 cell division protein FtsY; Provisional
Probab=98.90 E-value=1.1e-08 Score=94.13 Aligned_cols=170 Identities=21% Similarity=0.322 Sum_probs=99.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-H---HHhccccCCchHHHHHhCCCCCCChHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-F---LMRNGALPEERIRAVETGGCPHAAIRED 154 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~---~~~ig~v~q~~~~~i~~~g~~~~~~~~~ 154 (283)
++.+++++|+||+||||++..|+..+... .++.+...|.......+ + ...+|+- ++ ........
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~------v~--~~~~g~dp--- 207 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVK------VI--KHKYGADP--- 207 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCc------ee--cccCCCCH---
Confidence 46799999999999999999999988766 57888777754322211 1 1122210 00 00000000
Q ss_pred HHHHHHHHHHccccccCCCcccCCchHHH-----HHHHH---HHh-cCCcEEEEeCCCCCCchhhcC--CcccccCEEEE
Q 023354 155 ISINLGPLEELSNLFKADLLLCESGGDNL-----AANFS---REL-ADYIIYIIDVSGGDKIPRKGG--PGITQADLLVI 223 (283)
Q Consensus 155 ~~~~~~~l~~l~~~~~~d~~i~eSgGq~q-----~~~ia---~al-~~~~l~llDpt~g~~l~~~~~--~~i~~ad~ivi 223 (283)
...+...++.. ....+|.+++++.|..+ ...+. +.+ -+..++++|++.|.+...... ...--.+.+|+
T Consensus 208 ~~v~~~ai~~~-~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 208 AAVAYDAIEHA-KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHHHHHHHH-HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 11122233332 23467888888777532 12221 111 146789999888865433211 11123589999
Q ss_pred EcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 224 ~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
+|.|.-...|....++.. .+.|+.+++ +|+++++|..+
T Consensus 287 TKlD~~~~~G~~ls~~~~------~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 287 TKVDADAKGGAALSIAYV------IGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred eeecCCCCccHHHHHHHH------HCcCEEEEe--CCCChhhcccC
Confidence 999997776766555443 367998887 79999877654
No 461
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.90 E-value=2.9e-08 Score=81.75 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=55.8
Q ss_pred ccCCchHHHHHHHHHHhc---CCcEEEEeCCCCC---Cchhhc---CC-c-ccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354 175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGD---KIPRKG---GP-G-ITQADLLVINKTDLASAIGADLAVMERDA 243 (283)
Q Consensus 175 i~eSgGq~q~~~ia~al~---~~~l~llDpt~g~---~l~~~~---~~-~-i~~ad~ivi~K~g~i~~~g~~~e~~~~~~ 243 (283)
+++++|+.+...+..... +..++++|.+... .+.... .. . -...-.++.||.|+....-...+...+ +
T Consensus 54 l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~ 132 (165)
T cd01865 54 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQ-L 132 (165)
T ss_pred EEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHH-H
Confidence 444556544444433333 4788888976532 111110 00 0 022358999999986542112222222 2
Q ss_pred HhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354 244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
... .+.+++++|++++.|+++++++|....
T Consensus 133 ~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 133 ADQ-LGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred HHH-cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 222 345799999999999999999997654
No 462
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.89 E-value=2.6e-08 Score=83.06 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=58.2
Q ss_pred ccCCchHHHHHHHHHH---hcCCcEEEEeCCCCCCch---h---hc---CCcccccCEEEEEcCCcccccCChHHHHhHH
Q 023354 175 LCESGGDNLAANFSRE---LADYIIYIIDVSGGDKIP---R---KG---GPGITQADLLVINKTDLASAIGADLAVMERD 242 (283)
Q Consensus 175 i~eSgGq~q~~~ia~a---l~~~~l~llDpt~g~~l~---~---~~---~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~ 242 (283)
+++++|+.+...+... -++..++++|.+....+. . .. ......+..+++||.|.........+.....
T Consensus 53 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 132 (180)
T cd04137 53 IVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKEL 132 (180)
T ss_pred EEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHH
Confidence 4445555433223222 235788899987643211 0 00 0111345699999999864311122222222
Q ss_pred HHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 243 ALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 243 ~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
.. ....+++.+|++++.|+.+++.++...+...
T Consensus 133 -~~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 133 -AE-SWGAAFLESSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred -HH-HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 22 2346889999999999999999998876544
No 463
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.89 E-value=2.3e-08 Score=80.37 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=55.3
Q ss_pred ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354 175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDA 243 (283)
Q Consensus 175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~ 243 (283)
+++++|+.....+.... ++..++++|++....+ ..... ......-.|++||.|.........+.+....
T Consensus 53 l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 132 (159)
T cd00154 53 IWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFA 132 (159)
T ss_pred EEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHH
Confidence 44455554433333333 3578999998763211 11100 0012344789999999722222333333333
Q ss_pred HhhcCCCCeEEEEeccCCCHHHHHHHHH
Q 023354 244 LRMRDGGPFIFAQVKHGLGVEEIVNHIL 271 (283)
Q Consensus 244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~ 271 (283)
.. ...+++.+|++++.|+++++++|.
T Consensus 133 ~~--~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 133 KE--NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HH--cCCeEEEEecCCCCCHHHHHHHHh
Confidence 32 467899999999999999999875
No 464
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.89 E-value=7.9e-09 Score=96.04 Aligned_cols=154 Identities=23% Similarity=0.248 Sum_probs=79.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccC-CchHHHHHhCCCCCCChHHHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP-EERIRAVETGGCPHAAIREDISIN 158 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~-q~~~~~i~~~g~~~~~~~~~~~~~ 158 (283)
.+..|+|+|.+|||||||+|+|++.. . +....++++.+.. .+.+ .++ ..+..+++++|..........
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-----~-~v~~~~~tT~d~~-~~~i-~~~~~~~i~l~DT~G~~~~l~~~li--- 256 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-----V-YAADQLFATLDPT-TRRL-DLPDGGEVLLTDTVGFIRDLPHELV--- 256 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-----e-eeccCCccccCCE-EEEE-EeCCCceEEEEecCcccccCCHHHH---
Confidence 35899999999999999999999841 1 1112122211110 0111 111 112234556664211001000
Q ss_pred HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchh-----hcCCc---ccccCEEEEEcCCccc
Q 023354 159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR-----KGGPG---ITQADLLVINKTDLAS 230 (283)
Q Consensus 159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~-----~~~~~---i~~ad~ivi~K~g~i~ 230 (283)
+.+ +.... ...-+|.+++|+|.+....... ..... ....-.+|+||+|+..
T Consensus 257 ----e~f----------------~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 257 ----AAF----------------RATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred ----HHH----------------HHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 001 00000 1123578899999876432111 00000 1234589999999864
Q ss_pred ccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354 231 AIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 231 ~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~ 273 (283)
. .+. . .... ...+++++||++|.|+++++++|...
T Consensus 316 ~----~~v-~-~~~~--~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 316 E----PRI-E-RLEE--GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred h----HhH-H-HHHh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 2 111 1 1111 12468999999999999999998653
No 465
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.89 E-value=1.5e-08 Score=97.23 Aligned_cols=163 Identities=21% Similarity=0.212 Sum_probs=90.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C--cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCC--hHH
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IRE 153 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~--~~~ 153 (283)
.+|.+++|+|||||||||++..|++.+... | +|.++..|.......+-.+. +-..-+.+... ...
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~----------~AeilGVpv~~~~~~~ 323 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRI----------YGKILGVPVHAVKDAA 323 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHH----------HHHHhCCCeeccCCch
Confidence 358899999999999999999999987543 4 57777766532221111110 11111222211 111
Q ss_pred HHHHHHHHHHHccccccCCCcccCCchHHHHHH---HHH-HhcC-----CcEEEEeCCCCC-Cchh---hcCCcccccCE
Q 023354 154 DISINLGPLEELSNLFKADLLLCESGGDNLAAN---FSR-ELAD-----YIIYIIDVSGGD-KIPR---KGGPGITQADL 220 (283)
Q Consensus 154 ~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~---ia~-al~~-----~~l~llDpt~g~-~l~~---~~~~~i~~ad~ 220 (283)
+. ...+.. ....+.+++++.|..++.. ... .+.+ ..++++|++.+. ++.+ .+.. ...+.
T Consensus 324 Dl---~~aL~~---L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~--~~~~g 395 (484)
T PRK06995 324 DL---RLALSE---LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG--PGLAG 395 (484)
T ss_pred hH---HHHHHh---ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc--CCCCE
Confidence 11 112222 2244677777777544431 111 1222 268889977653 2221 1211 22468
Q ss_pred EEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH-HHHH
Q 023354 221 LVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV-EEIV 267 (283)
Q Consensus 221 ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi-~~l~ 267 (283)
+|++|.|.....|....+... ...|+.+++ +|+++ ++|.
T Consensus 396 ~IlTKlDet~~~G~~l~i~~~------~~lPI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 396 CILTKLDEAASLGGALDVVIR------YKLPLHYVS--NGQRVPEDLH 435 (484)
T ss_pred EEEeCCCCcccchHHHHHHHH------HCCCeEEEe--cCCCChhhhc
Confidence 999999987776665554433 367888876 68887 5443
No 466
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.89 E-value=2.6e-08 Score=81.86 Aligned_cols=81 Identities=25% Similarity=0.216 Sum_probs=50.2
Q ss_pred cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..|+++|+++... +..... ..-...-.++.||.|+........+....... ..+.+++++|+++|.|+
T Consensus 75 ~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v 152 (166)
T cd01869 75 AHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD--ELGIPFLETSAKNATNV 152 (166)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHH--HcCCeEEEEECCCCcCH
Confidence 368899999876421 111100 00123458899999976543222232222222 24568999999999999
Q ss_pred HHHHHHHHHHH
Q 023354 264 EEIVNHILQAW 274 (283)
Q Consensus 264 ~~l~~~l~~~~ 274 (283)
+++++++....
T Consensus 153 ~~~~~~i~~~~ 163 (166)
T cd01869 153 EQAFMTMAREI 163 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 467
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.89 E-value=1.6e-08 Score=82.84 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=49.6
Q ss_pred cCCcEEEEeCCCCCC---chhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDK---IPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+.... +.... ......+-.++.||.|+........+...... + ....+++++|++++.|
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-~-~~~~~~~~~Sa~~~~~ 149 (164)
T smart00173 72 GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-R-QWGCPFLETSAKERVN 149 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-H-HcCCEEEEeecCCCCC
Confidence 357789999776321 11100 00112344789999998654222222222222 2 2347899999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWE 275 (283)
Q Consensus 263 i~~l~~~l~~~~~ 275 (283)
+++++++|.+...
T Consensus 150 i~~l~~~l~~~~~ 162 (164)
T smart00173 150 VDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999976543
No 468
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.88 E-value=2.9e-08 Score=81.44 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=55.4
Q ss_pred ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---CchhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354 175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDA 243 (283)
Q Consensus 175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~ 243 (283)
++++.|+...-.+.... ++..|++.|.+... .+..... ..-..+-.++.||.|+........+......
T Consensus 56 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~ 135 (165)
T cd01868 56 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA 135 (165)
T ss_pred EEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHH
Confidence 34455554433333322 24678888976532 1111100 0002345788999998654322333333332
Q ss_pred HhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354 244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~~ 273 (283)
.. ...+++++|+++|.|++++++++...
T Consensus 136 ~~--~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 136 EK--NGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred HH--cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 22 35679999999999999999998754
No 469
>PRK04213 GTP-binding protein; Provisional
Probab=98.88 E-value=2.9e-08 Score=84.55 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=36.6
Q ss_pred ccCEEEEEcCCcccccCChHHHHhHHHHhhcC--------CCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 217 QADLLVINKTDLASAIGADLAVMERDALRMRD--------GGPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~--------~~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
..-.+|+||.|+.... .+.+.+ +.+... ..+++.+||++| |+++++++|...+.+
T Consensus 131 ~p~iiv~NK~Dl~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 131 IPPIVAVNKMDKIKNR---DEVLDE-IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCeEEEEECccccCcH---HHHHHH-HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 4459999999986442 122221 212111 136899999999 999999999887643
No 470
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.88 E-value=2e-08 Score=81.93 Aligned_cols=82 Identities=21% Similarity=0.149 Sum_probs=52.0
Q ss_pred cCCcEEEEeCCCCCC---chhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++.... +...... .-..+-.+++||.|.........+...+... . .+.+++++|++++.|+
T Consensus 73 ~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-~-~~~~~~e~Sa~~~~~i 150 (164)
T smart00175 73 AVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAE-E-HGLPFFETSAKTNTNV 150 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHH-H-cCCeEEEEeCCCCCCH
Confidence 368899999876421 1111000 0134568999999976533223333333332 2 3567999999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWE 275 (283)
Q Consensus 264 ~~l~~~l~~~~~ 275 (283)
+++++++.+...
T Consensus 151 ~~l~~~i~~~~~ 162 (164)
T smart00175 151 EEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 471
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.87 E-value=2.2e-08 Score=89.69 Aligned_cols=204 Identities=18% Similarity=0.183 Sum_probs=108.2
Q ss_pred CCCccceeeecCCCCcccCCCCCCCccccccCCCC--CCCCCCCCccc----ccccCC-CcEEEEEcCCCCcHHHHHHHH
Q 023354 29 HGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG--YFSRRAPPILS----RNFNER-AFTVGIGGPVGTGKTALMLAL 101 (283)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~-g~~v~ilG~nGsGKSTLl~~L 101 (283)
.....+..+-+++.+....+.|.-|-..-.+.+.. .|.-.++.++. ..+.-+ -.-++|+|.++|||||||++|
T Consensus 137 ~~~~~v~el~~~~~~~i~arGG~GG~gn~~fls~~~r~p~~~~~G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~al 216 (366)
T KOG1489|consen 137 EQGKLVAELTKEGDRVIAARGGEGGKGNKFFLSNENRSPKFSKPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNAL 216 (366)
T ss_pred ccchhHHHhccCCcEEEEeecCCCCccceeeccccccCcccccCCCCCceEEEEEEeeeecccceecCCCCcHHHHHHHh
Confidence 44556666667777777777777664333333311 11111122222 222222 456899999999999999999
Q ss_pred HhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHH---HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCC
Q 023354 102 CKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIR---AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCES 178 (283)
Q Consensus 102 ~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~---~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eS 178 (283)
+..-+.-+...+.+ .. -.+|.|.-+... +-+++|.....- . .
T Consensus 217 s~AKpkVa~YaFTT-----L~-----P~iG~v~yddf~q~tVADiPGiI~GAh---------------~----------n 261 (366)
T KOG1489|consen 217 SRAKPKVAHYAFTT-----LR-----PHIGTVNYDDFSQITVADIPGIIEGAH---------------M----------N 261 (366)
T ss_pred hccCCcccccceee-----ec-----cccceeeccccceeEeccCcccccccc---------------c----------c
Confidence 98533114333322 22 234544322211 112222211100 0 1
Q ss_pred chHHHHHHHHHH--hcCCcEEEEeCCCCCCchh---------h---cC-CcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354 179 GGDNLAANFSRE--LADYIIYIIDVSGGDKIPR---------K---GG-PGITQADLLVINKTDLASAIGADLAVMERDA 243 (283)
Q Consensus 179 gGq~q~~~ia~a--l~~~~l~llDpt~g~~l~~---------~---~~-~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~ 243 (283)
-|. =..+.|- -+...++|+|.+....+.. + +. .....+..||+||.|...++ +.+.+.+
T Consensus 262 kGl--G~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae----~~~l~~L 335 (366)
T KOG1489|consen 262 KGL--GYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE----KNLLSSL 335 (366)
T ss_pred Ccc--cHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH----HHHHHHH
Confidence 111 1112222 2346789999766632111 0 11 11245668999999986432 2222344
Q ss_pred HhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354 244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~~ 273 (283)
.+......|+.+||++++|++++++.|...
T Consensus 336 ~~~lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 336 AKRLQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred HHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence 444555569999999999999999988653
No 472
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.87 E-value=3.2e-08 Score=80.36 Aligned_cols=80 Identities=24% Similarity=0.242 Sum_probs=49.9
Q ss_pred cCCcEEEEeCCCCCCch---h---hc--CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIP---R---KG--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~---~~--~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|.+....+. . +. ......+-.+++||.|+.....-..+...+... ..+.+++++|++++.|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~gi 150 (162)
T cd04123 73 ADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAK--SVGAKHFETSAKTGKGI 150 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH--HcCCEEEEEeCCCCCCH
Confidence 35789999987653211 1 00 001134568899999987442222233332222 23567899999999999
Q ss_pred HHHHHHHHHH
Q 023354 264 EEIVNHILQA 273 (283)
Q Consensus 264 ~~l~~~l~~~ 273 (283)
+++++++...
T Consensus 151 ~~~~~~l~~~ 160 (162)
T cd04123 151 EELFLSLAKR 160 (162)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 473
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.87 E-value=1.4e-08 Score=82.77 Aligned_cols=79 Identities=24% Similarity=0.226 Sum_probs=48.6
Q ss_pred CCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 193 DYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 193 ~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
+..++++|.+....+ .... ...-..+-.+++||.|.........+....... ..+.+++.+|++++.|++
T Consensus 74 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~ 151 (161)
T cd01861 74 SVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK--ELNAMFIETSAKAGHNVK 151 (161)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHH--HhCCEEEEEeCCCCCCHH
Confidence 578888998654211 1100 000124568999999986432223232222222 235789999999999999
Q ss_pred HHHHHHHHH
Q 023354 265 EIVNHILQA 273 (283)
Q Consensus 265 ~l~~~l~~~ 273 (283)
++++++.+.
T Consensus 152 ~l~~~i~~~ 160 (161)
T cd01861 152 ELFRKIASA 160 (161)
T ss_pred HHHHHHHHh
Confidence 999998753
No 474
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.87 E-value=1.7e-08 Score=101.05 Aligned_cols=166 Identities=23% Similarity=0.253 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccC-CC--cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRD-KY--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS 156 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~ 156 (283)
+|.+++|+||||+||||++..|++.+.. .| +|.++..|.... |.+.|-. .+-...+.+..... +..
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Ri---------gA~eQL~-~~a~~~gvpv~~~~-~~~ 252 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRI---------GALEQLR-IYGRILGVPVHAVK-DAA 252 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccch---------HHHHHHH-HHHHhCCCCccccC-CHH
Confidence 4889999999999999999999998853 34 688887775432 2211110 01112222221111 111
Q ss_pred HHHHHHHHccccccCCCcccCCchHHH----HHHHHHHhc-----CCcEEEEeCCCCC-Cch---hhcCCcc-cccCEEE
Q 023354 157 INLGPLEELSNLFKADLLLCESGGDNL----AANFSRELA-----DYIIYIIDVSGGD-KIP---RKGGPGI-TQADLLV 222 (283)
Q Consensus 157 ~~~~~l~~l~~~~~~d~~i~eSgGq~q----~~~ia~al~-----~~~l~llDpt~g~-~l~---~~~~~~i-~~ad~iv 222 (283)
...+.+..+ ..+|.+++++.|..+ .......+. ...++|+|+++.. ++. ..+.... .-.+.+|
T Consensus 253 ~l~~al~~~---~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glI 329 (767)
T PRK14723 253 DLRFALAAL---GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCI 329 (767)
T ss_pred HHHHHHHHh---cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEE
Confidence 233445444 255888888777322 111111222 2578999988752 222 2222111 1247899
Q ss_pred EEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH-HHHH
Q 023354 223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV-EEIV 267 (283)
Q Consensus 223 i~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi-~~l~ 267 (283)
+.|-|.....|....+... .+.|+.+++ +|+++ ++|.
T Consensus 330 lTKLDEt~~~G~iL~i~~~------~~lPI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 330 ITKLDEATHLGPALDTVIR------HRLPVHYVS--TGQKVPEHLE 367 (767)
T ss_pred EeccCCCCCccHHHHHHHH------HCCCeEEEe--cCCCChhhcc
Confidence 9999988777766554433 367888877 68887 4443
No 475
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.87 E-value=6.9e-09 Score=82.99 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=52.9
Q ss_pred cCCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCChHHHH---hHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 192 ADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVM---ERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~---~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
++..++++|+......... .......+..+++||.|++... ..... ...........+++.+|++++.|++
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE--EEEELLELRLLILLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh--hHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence 4678889998776433221 1112345568999999988652 22221 1223344467889999999999999
Q ss_pred HHHHHHHHH
Q 023354 265 EIVNHILQA 273 (283)
Q Consensus 265 ~l~~~l~~~ 273 (283)
++++++...
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999998753
No 476
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.87 E-value=3.8e-08 Score=80.92 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=56.5
Q ss_pred cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCC---chhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHH
Q 023354 174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGDK---IPRKG-----GPGITQADLLVINKTDLASAIGADLAVMERD 242 (283)
Q Consensus 174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~---l~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~ 242 (283)
.+++++|+.+...+.... ++..++++|+++... +.... .......-.+|+||.|+........+....
T Consensus 55 ~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~- 133 (165)
T cd01864 55 QIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACT- 133 (165)
T ss_pred EEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHH-
Confidence 344566654443333333 368899999877421 11110 001123357899999986542212222222
Q ss_pred HHhhcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354 243 ALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 272 (283)
Q Consensus 243 ~~~~~~~~~i~~isa~~g~gi~~l~~~l~~ 272 (283)
+.+.....+++++|+++|.|++++++++.+
T Consensus 134 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 134 LAEKNGMLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred HHHHcCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 223333346899999999999999999875
No 477
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.86 E-value=2.2e-08 Score=81.27 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=46.9
Q ss_pred cCCcEEEEeCCCCCC---chhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDK---IPRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+.... +... ....-..+-.|+.||.|+...... .+....... ..+.+++++|+++|.|
T Consensus 73 ~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~--~~~~~~~~~Sa~~~~g 149 (162)
T cd04138 73 GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVS-SRQGQDLAK--SYGIPYIETSAKTRQG 149 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceec-HHHHHHHHH--HhCCeEEEecCCCCCC
Confidence 357788888765321 1110 000112344889999998653211 122222211 2356899999999999
Q ss_pred HHHHHHHHHHH
Q 023354 263 VEEIVNHILQA 273 (283)
Q Consensus 263 i~~l~~~l~~~ 273 (283)
++++++++.+.
T Consensus 150 i~~l~~~l~~~ 160 (162)
T cd04138 150 VEEAFYTLVRE 160 (162)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 478
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.86 E-value=4.3e-08 Score=81.05 Aligned_cols=81 Identities=20% Similarity=0.126 Sum_probs=50.0
Q ss_pred cCCcEEEEeCCCCC---CchhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGD---KIPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~---~l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++... ++..... ..-...-.++.||.|+........+........ .+.+++++|++++.|+
T Consensus 77 ~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 77 AAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKE--HGLIFMETSAKTASNV 154 (168)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence 35789999987532 1111110 001234489999999874432233333332222 3568899999999999
Q ss_pred HHHHHHHHHHH
Q 023354 264 EEIVNHILQAW 274 (283)
Q Consensus 264 ~~l~~~l~~~~ 274 (283)
++++.++....
T Consensus 155 ~~~~~~~~~~~ 165 (168)
T cd01866 155 EEAFINTAKEI 165 (168)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 479
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.86 E-value=4.1e-08 Score=81.03 Aligned_cols=81 Identities=21% Similarity=0.116 Sum_probs=50.8
Q ss_pred cCCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..|+++|.+....+. .... ..-...-.|+.||.|+........+........ ...+++++|++++.|+
T Consensus 76 ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v 153 (167)
T cd01867 76 AMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADE--YGIKFLETSAKANINV 153 (167)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence 35789999987643211 1100 001234589999999875432233333332222 3457899999999999
Q ss_pred HHHHHHHHHHH
Q 023354 264 EEIVNHILQAW 274 (283)
Q Consensus 264 ~~l~~~l~~~~ 274 (283)
+++++++...+
T Consensus 154 ~~~~~~i~~~~ 164 (167)
T cd01867 154 EEAFFTLAKDI 164 (167)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 480
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.85 E-value=5.7e-09 Score=99.01 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=73.1
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhC---
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG--- 144 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~--- 144 (283)
......+|..+ |--+.|+||||||||+|++.|.|+.+-. |... .- + ..++-|+||.|.--..+-
T Consensus 496 vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~-~P------~----~~~mFYIPQRPYms~gtlRDQ 564 (728)
T KOG0064|consen 496 VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLS-IP------R----PNNIFYIPQRPYMSGGTLRDQ 564 (728)
T ss_pred eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeee-cC------C----CcceEeccCCCccCcCcccce
Confidence 35567777754 9999999999999999999999987643 3322 11 1 134888888874110000
Q ss_pred -CCCCCC--------hHHHHHHHHH--HHHHccccc-cCCCc----ccCCchHHHHHHHHHHhcC-CcEEEEe-CCCC
Q 023354 145 -GCPHAA--------IREDISINLG--PLEELSNLF-KADLL----LCESGGDNLAANFSRELAD-YIIYIID-VSGG 204 (283)
Q Consensus 145 -g~~~~~--------~~~~~~~~~~--~l~~l~~~~-~~d~~----i~eSgGq~q~~~ia~al~~-~~l~llD-pt~g 204 (283)
-+|... ...++..++. .|+.+.... +.|.+ -.-|||++||+.+||.+-+ |...|+| .|+.
T Consensus 565 IIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsA 642 (728)
T KOG0064|consen 565 IIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSA 642 (728)
T ss_pred eecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcc
Confidence 011110 0122222222 122222222 23222 1129999999999999987 8888888 5554
No 481
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.85 E-value=4.7e-09 Score=97.18 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=78.0
Q ss_pred CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhc--------ccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH
Q 023354 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKF--------LRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR 139 (283)
Q Consensus 70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~--------~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~ 139 (283)
..++++|+..+ |++++|+|++||||||||++|+|. |+|+ |.|.+-.+.+....+.++--.++ . ..
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~----~-~t 471 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG----E-VT 471 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC----c-hh
Confidence 46788999866 999999999999999999999995 3455 77766555433222211111111 0 00
Q ss_pred HHH-hCCCCCCChHHHHHHHHHHHHHccccc--cCCCcccC-CchHHHHHHHHHHhcC-CcEEEEeC
Q 023354 140 AVE-TGGCPHAAIREDISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELAD-YIIYIIDV 201 (283)
Q Consensus 140 ~i~-~~g~~~~~~~~~~~~~~~~l~~l~~~~--~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llDp 201 (283)
+++ +.. ...+...+.+.|...++.+ .+-..+.| |.||+.|+.||..++. +.++++|-
T Consensus 472 ilehl~s-----~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 472 ILEHLRS-----KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred HHHHHhh-----ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 111 100 0112233455666655544 55666777 9999999999999996 78888883
No 482
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.85 E-value=3.3e-08 Score=80.72 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=48.9
Q ss_pred cCCcEEEEeCCCCCCc---hhhcC------CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI---PRKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~~~------~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+....+ ..... .....+-.|++||.|+........+...+... . .+.+++++|+++|.|
T Consensus 74 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~~ 151 (164)
T cd04145 74 GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-K-LKIPYIETSAKDRLN 151 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-H-cCCcEEEeeCCCCCC
Confidence 3678899998764211 11100 00123458899999986542222222222222 2 346899999999999
Q ss_pred HHHHHHHHHHH
Q 023354 263 VEEIVNHILQA 273 (283)
Q Consensus 263 i~~l~~~l~~~ 273 (283)
++++++++...
T Consensus 152 i~~l~~~l~~~ 162 (164)
T cd04145 152 VDKAFHDLVRV 162 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 483
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.85 E-value=3.1e-08 Score=81.29 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=49.3
Q ss_pred cCCcEEEEeCCCCCC---chhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDK---IPRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+.... +... ....-..+-.++.||.|+........+...... +. ...+++++||+++.|
T Consensus 73 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~~ 150 (164)
T cd04175 73 GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-RQ-WGCAFLETSAKAKIN 150 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH-HH-hCCEEEEeeCCCCCC
Confidence 467888889765321 1110 001113455899999998654322222222222 22 346899999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAW 274 (283)
Q Consensus 263 i~~l~~~l~~~~ 274 (283)
+++++.++.+..
T Consensus 151 v~~~~~~l~~~l 162 (164)
T cd04175 151 VNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHHHHHHh
Confidence 999999997643
No 484
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.84 E-value=2.6e-08 Score=84.24 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=90.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHH-HH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS-IN 158 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~-~~ 158 (283)
...-|+++|++++|||||||+|++.-. ++-.+..++.+. .-.-|...+...+++++|+-+........ ..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~----LArtSktPGrTq-----~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w 93 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKN----LARTSKTPGRTQ-----LINFFEVDDELRLVDLPGYGYAKVPKEVKEKW 93 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcc----eeecCCCCCccc-----eeEEEEecCcEEEEeCCCcccccCCHHHHHHH
Confidence 466799999999999999999999421 111222222110 00111111223467888887765433222 22
Q ss_pred HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCC
Q 023354 159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~ 234 (283)
...+.++. ..|.. +...++|+|...+...... .......+-.|+++|.|++.....
T Consensus 94 ~~~i~~YL---------------~~R~~-----L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 94 KKLIEEYL---------------EKRAN-----LKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHHHHHHH---------------hhchh-----heEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH
Confidence 22232221 11111 2357889996655322111 111224556999999999976222
Q ss_pred hHHHHhH---HHHhhcCCCC-eEEEEeccCCCHHHHHHHHHHHHH
Q 023354 235 DLAVMER---DALRMRDGGP-FIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 235 ~~e~~~~---~~~~~~~~~~-i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
. ..+.. .+....++.+ ++..|+.++.|++++...|...+.
T Consensus 154 ~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 154 N-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred H-HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 1 11111 2222222222 788899999999999999887764
No 485
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.84 E-value=3e-08 Score=81.61 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=48.2
Q ss_pred cCCcEEEEeCCCCCCc---hhhc---C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKI---PRKG---G--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~~---~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++....+ .... . ..-...-.+++||.|+.....-. ........+. ...+++.+|+++|.|+
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~-~~~~~~~~~~-~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 80 ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVS-QQRAEEFSDA-QDMYYLETSAKESDNV 157 (169)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC-HHHHHHHHHH-cCCeEEEeeCCCCCCH
Confidence 3578888997754211 1110 0 01123348999999976432212 2222222232 2367899999999999
Q ss_pred HHHHHHHHHH
Q 023354 264 EEIVNHILQA 273 (283)
Q Consensus 264 ~~l~~~l~~~ 273 (283)
+++++++...
T Consensus 158 ~~l~~~i~~~ 167 (169)
T cd04114 158 EKLFLDLACR 167 (169)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 486
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.84 E-value=3.5e-08 Score=80.54 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=56.2
Q ss_pred CcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---Cchhhc---C-CcccccCEEEEEcCCcccccCChHHHHhHH
Q 023354 173 LLLCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRKG---G-PGITQADLLVINKTDLASAIGADLAVMERD 242 (283)
Q Consensus 173 ~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~~---~-~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~ 242 (283)
..+++++|+.....+.... ++..+++.|.+... .+.... . ..-...-.+++||.|+.....-..+.....
T Consensus 53 ~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~ 132 (162)
T cd04106 53 LMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEAL 132 (162)
T ss_pred EEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHH
Confidence 3344555554333333222 35778888876542 111110 0 001334589999999876433223333322
Q ss_pred HHhhcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354 243 ALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 272 (283)
Q Consensus 243 ~~~~~~~~~i~~isa~~g~gi~~l~~~l~~ 272 (283)
... .+.+++++|++++.|+++++++|..
T Consensus 133 ~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 133 AKR--LQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHH--cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 222 3468999999999999999999864
No 487
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.84 E-value=1.3e-08 Score=83.11 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=46.8
Q ss_pred cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHH-hhc---CCCCeEEEEec
Q 023354 192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDAL-RMR---DGGPFIFAQVK 258 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~~---~~~~i~~isa~ 258 (283)
++..|+++|.+....+.. .. . .....+-.+++||.|+.... .. +.+...+. ... ...+++++||+
T Consensus 68 ~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~-~~i~~~~~~~~~~~~~~~~~~~~Sa~ 145 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-TA-EEITRRFKLKKYCSDRDWYVQPCSAV 145 (160)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-CH-HHHHHHcCCcccCCCCcEEEEecccc
Confidence 357899999876432111 00 0 00134568999999985331 22 22222211 111 23468889999
Q ss_pred cCCCHHHHHHHHHH
Q 023354 259 HGLGVEEIVNHILQ 272 (283)
Q Consensus 259 ~g~gi~~l~~~l~~ 272 (283)
+|.|+++++++|.+
T Consensus 146 ~~~gv~~~~~~i~~ 159 (160)
T cd04156 146 TGEGLAEAFRKLAS 159 (160)
T ss_pred cCCChHHHHHHHhc
Confidence 99999999998854
No 488
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.83 E-value=2.6e-08 Score=82.04 Aligned_cols=80 Identities=16% Similarity=0.100 Sum_probs=47.9
Q ss_pred cCCcEEEEeCCCCCCc---hhh-------cCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354 192 ADYIIYIIDVSGGDKI---PRK-------GGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG 260 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~-------~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g 260 (283)
++..|+++|.++...+ ... ... .-..+-.+|.||.|+.....-..+..... ...+..+++++||++|
T Consensus 73 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~--~~~~~~~~~e~SA~~g 150 (165)
T cd04140 73 GHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC--ATEWNCAFMETSAKTN 150 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH--HHHhCCcEEEeecCCC
Confidence 4678889997764321 110 000 01345589999999864211111111111 1224567899999999
Q ss_pred CCHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQA 273 (283)
Q Consensus 261 ~gi~~l~~~l~~~ 273 (283)
.|+++++++|...
T Consensus 151 ~~v~~~f~~l~~~ 163 (165)
T cd04140 151 HNVQELFQELLNL 163 (165)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999998753
No 489
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.83 E-value=3.9e-08 Score=80.53 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=57.1
Q ss_pred cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhc---C-CcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354 174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKG---G-PGITQADLLVINKTDLASAIGADLAVMERDA 243 (283)
Q Consensus 174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~---~-~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~ 243 (283)
.+++++|+...-.+.+.. ++..+++.|.+....+ .... . ......-.+|+||.|+.............
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-- 132 (164)
T cd04101 55 FIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQA-- 132 (164)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHH--
Confidence 344556655433333322 3578999998764211 1110 0 00124558899999986542212222111
Q ss_pred HhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354 244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
.....+.+++.+|++++.|+++++++|...+
T Consensus 133 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 133 FAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 2223456789999999999999999987653
No 490
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.83 E-value=2.7e-08 Score=83.76 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=56.4
Q ss_pred ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCchh---------hcCCcccccCEEEEEcCCcccccCChHHHHhHH
Q 023354 175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAVMERD 242 (283)
Q Consensus 175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l~~---------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~ 242 (283)
+++++|+.+.-.+.... ++..++++|++....+.. ........+-.|++||.|+... ...+.+...
T Consensus 56 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~ 133 (183)
T cd04152 56 FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKL 133 (183)
T ss_pred EEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHH
Confidence 44566654333333332 357899999876422111 0001123456899999997533 122222221
Q ss_pred HH--hhc--CCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 243 AL--RMR--DGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 243 ~~--~~~--~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
+. ... ...+++++||++++|+++++++|.....
T Consensus 134 ~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 134 LALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred hCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 11 111 1246789999999999999999987653
No 491
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.83 E-value=2.3e-08 Score=86.48 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=56.3
Q ss_pred ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---Cchhh------cCC--cccccCEEEEEcCCcccccCChHHHHh
Q 023354 175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRK------GGP--GITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~------~~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+++++|+...-.+.... ++.+|+++|.++.. .+... ... .....-.+|.||.|+........+...
T Consensus 54 i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~ 133 (215)
T cd04109 54 VWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA 133 (215)
T ss_pred EEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH
Confidence 44455554433333222 46889999987642 11110 000 001123678999998643222222222
Q ss_pred HHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 241 RDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 241 ~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
. +.+. .+.+.+++||++|.|++++++++...+.
T Consensus 134 ~-~~~~-~~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 134 R-FAQA-NGMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred H-HHHH-cCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2 2222 3567899999999999999999987653
No 492
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.83 E-value=4.4e-08 Score=80.63 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=51.8
Q ss_pred cCCcEEEEeCCCCCCch---h---hcCCc------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDKIP---R---KGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~---~~~~~------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~ 259 (283)
++..|+++|+.....+. . ..... -...-.+++||.|+........+.... +.+.....+++.+|+++
T Consensus 73 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~ 151 (172)
T cd01862 73 ADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQ-WCQSNGNIPYFETSAKE 151 (172)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHH-HHHHcCCceEEEEECCC
Confidence 35789999976543211 0 00000 023447888999997432223333333 33334446899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAWEA 276 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~~ 276 (283)
|.|++++++++.....+
T Consensus 152 ~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 152 AINVEQAFETIARKALE 168 (172)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999876543
No 493
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.82 E-value=1.8e-08 Score=96.65 Aligned_cols=156 Identities=26% Similarity=0.278 Sum_probs=83.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL 159 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~ 159 (283)
++..++|+|++|||||||+|.|++.-. .+....++++.+.. ...+. +...+..+++++|..... .
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~gtT~d~~-~~~i~-~~g~~i~l~DT~G~~~~~--~------ 278 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-----AIVTDIAGTTRDVI-EEHIN-LDGIPLRLIDTAGIRETD--D------ 278 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCCcccccE-EEEEE-ECCeEEEEEeCCCCCCCc--c------
Confidence 578999999999999999999998421 11111122211100 00000 011112344555542110 0
Q ss_pred HHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhh--cCCcccccCEEEEEcCCcccccCChHH
Q 023354 160 GPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADLA 237 (283)
Q Consensus 160 ~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~--~~~~i~~ad~ivi~K~g~i~~~g~~~e 237 (283)
.++.+ |. ++..-...-+|.+++|+|++........ ........-.+|+||.|+.... ...
T Consensus 279 -~ie~~--------------gi-~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~--~~~ 340 (449)
T PRK05291 279 -EVEKI--------------GI-ERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEI--DLE 340 (449)
T ss_pred -HHHHH--------------HH-HHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccc--hhh
Confidence 00000 00 1111112335788999998765321110 0001133558999999986431 111
Q ss_pred HHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 238 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 238 ~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
.....+++.+|+++|.|+++++++|......
T Consensus 341 --------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 341 --------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred --------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 2234578999999999999999999887653
No 494
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.82 E-value=5.2e-08 Score=82.14 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=50.0
Q ss_pred cCCcEEEEeCCCCCCch---hh---cC--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIP---RK---GG--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~~---~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++....+. .. .. ..-...-.++.||.|+........+...... ...+.+++.+|++++.|+
T Consensus 73 ~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~--~~~~~~~~evSa~~~~~i 150 (188)
T cd04125 73 AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFC--DSLNIPFFETSAKQSINV 150 (188)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHH--HHcCCeEEEEeCCCCCCH
Confidence 36889999987643211 10 00 0001234789999997643211222222221 223558999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
++++++|......
T Consensus 151 ~~~f~~l~~~~~~ 163 (188)
T cd04125 151 EEAFILLVKLIIK 163 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876643
No 495
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.81 E-value=5.6e-08 Score=82.99 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCcEEEEeCCCCCC---ch-------hhcC--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354 193 DYIIYIIDVSGGDK---IP-------RKGG--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG 260 (283)
Q Consensus 193 ~~~l~llDpt~g~~---l~-------~~~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g 260 (283)
+..|+++|.+.... +. .... .....+-.||.||.|+........+...+... .....+++++|+++|
T Consensus 75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~e~Sak~~ 153 (201)
T cd04107 75 VGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCK-ENGFIGWFETSAKEG 153 (201)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHH-HcCCceEEEEeCCCC
Confidence 57889999776321 11 1000 01123458999999986322223333333322 233357899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWE 275 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~ 275 (283)
.|+++++++|.....
T Consensus 154 ~~v~e~f~~l~~~l~ 168 (201)
T cd04107 154 INIEEAMRFLVKNIL 168 (201)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 496
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.81 E-value=7.8e-08 Score=81.44 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=58.3
Q ss_pred ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354 175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDA 243 (283)
Q Consensus 175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~ 243 (283)
++++.|+.....+.... ++..|+++|.+....+ .... ...-..+-.++.||.|+........+.... +
T Consensus 54 i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~-l 132 (191)
T cd04112 54 IWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGER-L 132 (191)
T ss_pred EEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHH-H
Confidence 44555544333333332 3578999998764221 1100 000123457889999986432222222222 2
Q ss_pred HhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
.. ..+.+++++|+++|.|+++++++|.+.....
T Consensus 133 ~~-~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 133 AK-EYGVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred HH-HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 22 2456899999999999999999998776543
No 497
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.81 E-value=2.4e-08 Score=84.15 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=47.7
Q ss_pred cCCcEEEEeCCCCCCchh---h----cC--CcccccCEEEEEcCCcccccCChHHHHhHHHHh-h---------cCCCCe
Q 023354 192 ADYIIYIIDVSGGDKIPR---K----GG--PGITQADLLVINKTDLASAIGADLAVMERDALR-M---------RDGGPF 252 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~----~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~-~---------~~~~~i 252 (283)
++..++++|.+....+.. . .. .....+-.|++||.|+... -..+.+.+.+.- . .....+
T Consensus 85 ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 85 VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCceeEE
Confidence 357899999876421111 0 00 0013456899999997533 223333333210 0 123358
Q ss_pred EEEEeccCCCHHHHHHHHHH
Q 023354 253 IFAQVKHGLGVEEIVNHILQ 272 (283)
Q Consensus 253 ~~isa~~g~gi~~l~~~l~~ 272 (283)
+.+|+++++|++++++||..
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred EEeecccCCChHHHHHHHHh
Confidence 99999999999999999965
No 498
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.81 E-value=1.2e-08 Score=84.15 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=37.7
Q ss_pred cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354 216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 272 (283)
Q Consensus 216 ~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~ 272 (283)
..+..+++||.|+..... ...............+++.+|++++.|++++++++..
T Consensus 120 ~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 120 AKPVIYVLNKIDLDDAEE--LEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred hCCeEEEEEchhcCchhH--HHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 456789999999875421 1111111223335678999999999999999998854
No 499
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.81 E-value=1.2e-08 Score=86.41 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=52.9
Q ss_pred hcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhH---HHHhhcC-----CCCeEEEEec
Q 023354 191 LADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMER---DALRMRD-----GGPFIFAQVK 258 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~---~~~~~~~-----~~~i~~isa~ 258 (283)
.+|..|+++|+..|...+... .......-.|++||.|++.. ...+..++ .+.+... ..|++++|++
T Consensus 93 ~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~ 170 (188)
T PF00009_consen 93 QADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEK--ELEEIIEEIKEKLLKEYGENGEEIVPVIPISAL 170 (188)
T ss_dssp TSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHH--HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTT
T ss_pred ccccceeeeecccccccccccccccccccccceEEeeeeccchhh--hHHHHHHHHHHHhccccccCccccceEEEEecC
Confidence 457899999998875432211 01123345899999999833 22222221 2222221 3579999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 023354 259 HGLGVEEIVNHILQAWE 275 (283)
Q Consensus 259 ~g~gi~~l~~~l~~~~~ 275 (283)
+|.|+++|+++|...+|
T Consensus 171 ~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 171 TGDGIDELLEALVELLP 187 (188)
T ss_dssp TTBTHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHhCc
Confidence 99999999999988765
No 500
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.80 E-value=3.7e-08 Score=82.03 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=59.4
Q ss_pred CcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHh
Q 023354 173 LLLCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 173 ~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
..++++.||.+...+.... ++..+++.|++... ++.... ...-...-.+|.||.|+........+...
T Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~ 144 (180)
T cd04127 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK 144 (180)
T ss_pred EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH
Confidence 3455666766544444433 35789999987642 111110 00012234789999998754222223332
Q ss_pred HHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354 241 RDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 241 ~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
..... .+.+++++|+++|.|+++++++|....
T Consensus 145 ~~~~~--~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 145 ALADK--YGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHH--cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22222 356899999999999999999997643
Done!