Query 023354
Match_columns 283
No_of_seqs 364 out of 2127
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 05:23:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4.4E-29 1.5E-33 230.1 10.2 188 53-240 23-253 (366)
2 4g1u_C Hemin import ATP-bindin 100.0 3.5E-28 1.2E-32 216.1 13.3 198 54-254 11-251 (266)
3 3gfo_A Cobalt import ATP-bindi 100.0 2E-28 6.9E-33 218.5 11.3 186 55-241 8-234 (275)
4 3nh6_A ATP-binding cassette SU 99.9 8.1E-28 2.8E-32 217.5 10.2 186 52-240 51-277 (306)
5 3fvq_A Fe(3+) IONS import ATP- 99.9 1.9E-27 6.4E-32 219.0 11.3 181 58-240 8-228 (359)
6 1z47_A CYSA, putative ABC-tran 99.9 1.9E-27 6.4E-32 219.0 10.8 184 54-240 14-235 (355)
7 3tif_A Uncharacterized ABC tra 99.9 1.9E-27 6.6E-32 207.6 9.8 178 59-236 6-230 (235)
8 2olj_A Amino acid ABC transpor 99.9 3.9E-27 1.4E-31 208.9 11.3 183 55-239 25-247 (263)
9 3rlf_A Maltose/maltodextrin im 99.9 2.5E-27 8.6E-32 219.6 10.1 170 69-240 16-223 (381)
10 2ihy_A ABC transporter, ATP-bi 99.9 7.6E-27 2.6E-31 208.8 12.0 195 55-251 22-263 (279)
11 1vpl_A ABC transporter, ATP-bi 99.9 3.9E-27 1.3E-31 208.2 9.4 187 50-239 11-234 (256)
12 1ji0_A ABC transporter; ATP bi 99.9 6.2E-27 2.1E-31 205.0 10.3 184 55-240 7-228 (240)
13 1g6h_A High-affinity branched- 99.9 1.3E-26 4.4E-31 205.0 12.2 181 55-237 8-239 (257)
14 2ixe_A Antigen peptide transpo 99.9 2.9E-26 9.9E-31 204.2 14.2 187 53-240 15-245 (271)
15 4f4c_A Multidrug resistance pr 99.9 1.1E-26 3.8E-31 245.2 11.9 191 50-240 1072-1304(1321)
16 2yyz_A Sugar ABC transporter, 99.9 3.1E-26 1.1E-30 211.2 12.5 169 70-240 17-223 (359)
17 1v43_A Sugar-binding transport 99.9 4.7E-26 1.6E-30 210.9 13.6 182 55-240 12-231 (372)
18 1b0u_A Histidine permease; ABC 99.9 1.5E-26 5E-31 205.2 9.7 183 55-239 7-241 (262)
19 2ff7_A Alpha-hemolysin translo 99.9 1.3E-26 4.4E-31 203.9 9.2 180 55-239 8-231 (247)
20 3d31_A Sulfate/molybdate ABC t 99.9 1.3E-26 4.5E-31 213.0 9.0 166 71-240 15-217 (348)
21 2it1_A 362AA long hypothetical 99.9 9.8E-27 3.4E-31 214.8 8.1 179 58-240 7-223 (362)
22 2yz2_A Putative ABC transporte 99.9 3E-26 1E-30 203.6 9.2 169 69-240 20-227 (266)
23 2pcj_A ABC transporter, lipopr 99.9 2.4E-26 8.4E-31 199.2 8.0 176 57-234 7-222 (224)
24 1oxx_K GLCV, glucose, ABC tran 99.9 4.7E-26 1.6E-30 209.8 10.4 168 71-240 20-230 (353)
25 2qi9_C Vitamin B12 import ATP- 99.9 1.2E-25 4.2E-30 197.8 11.9 167 70-240 14-222 (249)
26 1mv5_A LMRA, multidrug resista 99.9 9.7E-26 3.3E-30 197.7 10.7 179 57-240 4-226 (243)
27 3qf4_A ABC transporter, ATP-bi 99.9 7E-26 2.4E-30 221.8 10.5 189 51-241 338-567 (587)
28 1g29_1 MALK, maltose transport 99.9 5.9E-26 2E-30 210.5 8.8 170 69-240 16-229 (372)
29 2onk_A Molybdate/tungstate ABC 99.9 2.3E-25 7.8E-30 195.1 12.0 165 71-239 14-215 (240)
30 3gd7_A Fusion complex of cysti 99.9 4.2E-26 1.4E-30 212.5 7.4 182 53-240 18-242 (390)
31 4a82_A Cystic fibrosis transme 99.9 1.4E-25 4.9E-30 219.3 9.8 184 52-240 337-564 (578)
32 2ghi_A Transport protein; mult 99.9 3.2E-25 1.1E-29 196.4 11.1 183 53-240 16-242 (260)
33 4f4c_A Multidrug resistance pr 99.9 5.5E-25 1.9E-29 232.3 13.9 189 51-240 412-641 (1321)
34 3b60_A Lipid A export ATP-bind 99.9 8.3E-25 2.8E-29 214.0 12.9 185 52-240 339-567 (582)
35 3b5x_A Lipid A export ATP-bind 99.9 8.9E-25 3.1E-29 213.8 12.9 185 52-240 339-567 (582)
36 2nq2_C Hypothetical ABC transp 99.9 4.1E-25 1.4E-29 194.9 8.9 181 57-252 7-229 (253)
37 3qf4_B Uncharacterized ABC tra 99.9 7.5E-25 2.6E-29 214.9 10.0 183 52-240 352-578 (598)
38 2zu0_C Probable ATP-dependent 99.9 2.2E-24 7.4E-29 191.7 10.9 184 54-239 20-253 (267)
39 2cbz_A Multidrug resistance-as 99.9 4.4E-24 1.5E-28 186.5 10.5 169 56-240 5-217 (237)
40 2d2e_A SUFC protein; ABC-ATPas 99.9 2.5E-24 8.5E-29 189.5 7.4 178 57-236 6-229 (250)
41 2yl4_A ATP-binding cassette SU 99.9 2.6E-24 8.8E-29 211.1 8.2 185 52-240 338-570 (595)
42 1sgw_A Putative ABC transporte 99.9 1.7E-24 5.8E-29 186.4 4.0 145 54-208 10-167 (214)
43 2pze_A Cystic fibrosis transme 99.9 1.4E-23 4.7E-28 182.5 8.3 167 55-240 7-218 (229)
44 3g5u_A MCG1178, multidrug resi 99.9 3.6E-23 1.2E-27 218.0 12.6 189 52-240 1028-1258(1284)
45 3g5u_A MCG1178, multidrug resi 99.9 2.4E-23 8.2E-28 219.4 11.1 186 51-240 384-613 (1284)
46 2pjz_A Hypothetical protein ST 99.9 9.1E-24 3.1E-28 187.3 6.0 165 70-241 19-216 (263)
47 2bbs_A Cystic fibrosis transme 99.8 1.2E-21 4.1E-26 175.9 8.6 167 53-240 39-247 (290)
48 3bk7_A ABC transporter ATP-bin 99.8 2.5E-19 8.6E-24 175.6 9.7 151 72-241 372-564 (607)
49 1yqt_A RNAse L inhibitor; ATP- 99.8 1.1E-19 3.7E-24 176.2 6.7 151 72-241 302-494 (538)
50 3ozx_A RNAse L inhibitor; ATP 99.8 1E-18 3.4E-23 169.2 9.9 137 76-226 288-461 (538)
51 2qm8_A GTPase/ATPase; G protei 99.7 1.1E-18 3.7E-23 159.9 7.6 202 71-275 44-260 (337)
52 3j16_B RLI1P; ribosome recycli 99.7 3E-18 1E-22 167.9 10.2 160 70-229 92-299 (608)
53 3j16_B RLI1P; ribosome recycli 99.7 2.9E-18 1E-22 168.0 8.9 155 71-241 362-560 (608)
54 2iw3_A Elongation factor 3A; a 99.7 2.6E-18 8.9E-23 174.9 8.1 62 54-115 671-734 (986)
55 1yqt_A RNAse L inhibitor; ATP- 99.7 3.5E-18 1.2E-22 165.5 8.1 166 58-227 25-234 (538)
56 3bk7_A ABC transporter ATP-bin 99.7 3.4E-18 1.2E-22 167.6 7.6 166 58-227 95-304 (607)
57 3ux8_A Excinuclease ABC, A sub 99.7 5.3E-18 1.8E-22 168.4 7.3 173 68-240 30-298 (670)
58 3ozx_A RNAse L inhibitor; ATP 99.7 1.5E-17 5.2E-22 160.9 7.1 155 71-228 15-214 (538)
59 3ux8_A Excinuclease ABC, A sub 99.7 3.6E-17 1.2E-21 162.4 8.9 82 158-239 523-639 (670)
60 2iw3_A Elongation factor 3A; a 99.6 7.4E-16 2.5E-20 157.0 10.2 161 59-240 440-635 (986)
61 2www_A Methylmalonic aciduria 99.6 5.7E-16 2E-20 142.4 7.1 189 80-275 73-278 (349)
62 2r6f_A Excinuclease ABC subuni 99.6 7.4E-16 2.5E-20 156.1 8.5 83 158-240 825-942 (972)
63 2ygr_A Uvrabc system protein A 99.6 1.9E-15 6.5E-20 153.6 9.1 83 158-240 843-960 (993)
64 2vf7_A UVRA2, excinuclease ABC 99.6 5.5E-16 1.9E-20 156.3 4.8 84 157-240 709-827 (842)
65 3p32_A Probable GTPase RV1496/ 99.6 2.5E-14 8.7E-19 131.6 14.3 189 79-276 77-284 (355)
66 3b9q_A Chloroplast SRP recepto 99.6 1E-15 3.4E-20 138.1 3.3 176 74-265 92-287 (302)
67 3b85_A Phosphate starvation-in 99.5 2.6E-17 9.1E-22 140.8 -7.2 109 79-204 20-134 (208)
68 2og2_A Putative signal recogni 99.5 2.4E-15 8.1E-20 138.6 4.3 177 74-266 149-345 (359)
69 2v9p_A Replication protein E1; 99.5 1E-16 3.6E-21 144.5 -4.7 152 54-238 101-264 (305)
70 3sop_A Neuronal-specific septi 99.5 4.6E-17 1.6E-21 144.7 -9.1 139 82-231 3-155 (270)
71 3pih_A Uvrabc system protein A 99.5 8.1E-14 2.8E-18 141.6 13.0 84 157-240 784-902 (916)
72 1rj9_A FTSY, signal recognitio 99.5 7.4E-14 2.5E-18 125.9 11.3 164 80-265 101-288 (304)
73 2npi_A Protein CLP1; CLP1-PCF1 99.5 1.5E-16 5E-21 151.3 -7.5 152 74-238 130-336 (460)
74 2p67_A LAO/AO transport system 99.5 3E-14 1E-18 130.4 6.7 198 72-275 46-260 (341)
75 2wsm_A Hydrogenase expression/ 99.4 3.4E-14 1.2E-18 121.0 4.3 186 80-277 29-215 (221)
76 1tq4_A IIGP1, interferon-induc 99.4 2.9E-15 1E-19 140.3 -3.8 168 71-275 38-252 (413)
77 3aez_A Pantothenate kinase; tr 99.4 3.2E-14 1.1E-18 128.8 1.0 135 78-227 87-227 (312)
78 4aby_A DNA repair protein RECN 99.4 9.6E-14 3.3E-18 129.7 4.3 35 71-106 50-85 (415)
79 2yhs_A FTSY, cell division pro 99.4 5.8E-13 2E-17 126.7 7.9 171 73-266 284-480 (503)
80 3e70_C DPA, signal recognition 99.4 1.2E-12 4E-17 119.3 9.0 166 79-266 127-310 (328)
81 4gp7_A Metallophosphoesterase; 99.4 9.2E-14 3.2E-18 114.7 1.5 113 75-208 2-117 (171)
82 1ye8_A Protein THEP1, hypothet 99.4 2.5E-13 8.7E-18 113.1 3.5 105 83-207 2-116 (178)
83 2hf9_A Probable hydrogenase ni 99.3 7.1E-13 2.4E-17 113.2 5.6 185 80-276 37-224 (226)
84 2qnr_A Septin-2, protein NEDD5 99.3 4.7E-14 1.6E-18 127.0 -1.9 186 70-274 12-212 (301)
85 1z6g_A Guanylate kinase; struc 99.3 3.2E-13 1.1E-17 115.8 0.3 67 71-140 12-80 (218)
86 2pt7_A CAG-ALFA; ATPase, prote 99.3 4.8E-13 1.6E-17 122.0 0.3 88 71-203 160-251 (330)
87 1nij_A Hypothetical protein YJ 99.2 1.8E-12 6E-17 117.6 2.2 159 80-256 3-186 (318)
88 1udx_A The GTP-binding protein 99.2 1.7E-12 5.6E-17 121.8 2.0 207 31-277 100-326 (416)
89 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 3.1E-11 1.1E-15 111.4 9.9 59 173-231 275-364 (365)
90 1mky_A Probable GTP-binding pr 99.2 2.2E-11 7.4E-16 115.0 7.1 88 190-277 262-356 (439)
91 1e69_A Chromosome segregation 99.2 3.8E-11 1.3E-15 108.8 7.1 36 172-207 214-256 (322)
92 2f1r_A Molybdopterin-guanine d 99.2 2.8E-13 9.5E-18 112.3 -6.4 103 82-193 3-120 (171)
93 3iev_A GTP-binding protein ERA 99.1 6.9E-11 2.4E-15 106.5 7.8 163 81-275 10-181 (308)
94 2rcn_A Probable GTPase ENGC; Y 99.1 2.3E-11 7.8E-16 111.8 3.7 115 72-192 206-329 (358)
95 1ky3_A GTP-binding protein YPT 99.1 1.3E-10 4.6E-15 94.6 7.1 83 193-276 83-178 (182)
96 2jeo_A Uridine-cytidine kinase 99.1 9.8E-12 3.4E-16 108.2 -0.8 117 68-200 11-140 (245)
97 2qag_C Septin-7; cell cycle, c 99.0 2.4E-11 8.1E-16 114.0 -0.3 192 54-273 11-224 (418)
98 2dy1_A Elongation factor G; tr 99.0 3E-10 1E-14 112.5 7.0 123 79-229 7-139 (665)
99 2f7s_A C25KG, RAS-related prot 99.0 1.5E-09 5E-14 91.7 10.2 103 172-276 85-199 (217)
100 3q72_A GTP-binding protein RAD 99.0 1.1E-09 3.9E-14 87.9 9.1 83 192-276 73-164 (166)
101 1f6b_A SAR1; gtpases, N-termin 99.0 1.1E-10 3.6E-15 98.0 2.8 79 192-272 93-195 (198)
102 3dz8_A RAS-related protein RAB 99.0 1.2E-09 4E-14 90.6 9.0 153 81-276 23-186 (191)
103 2e87_A Hypothetical protein PH 99.0 3.7E-10 1.3E-14 103.7 6.3 160 79-276 165-336 (357)
104 1m2o_B GTP-binding protein SAR 99.0 3.9E-10 1.3E-14 93.8 5.8 79 192-272 91-188 (190)
105 4dcu_A GTP-binding protein ENG 99.0 1.4E-09 4.7E-14 103.1 10.2 89 190-278 276-371 (456)
106 1pui_A ENGB, probable GTP-bind 99.0 1.7E-10 5.8E-15 96.9 3.5 83 193-276 110-199 (210)
107 3pqc_A Probable GTP-binding pr 99.0 7.7E-10 2.6E-14 91.2 7.3 81 193-275 106-193 (195)
108 2dpy_A FLII, flagellum-specifi 99.0 1.1E-10 3.9E-15 110.1 2.5 82 53-136 130-221 (438)
109 2hjg_A GTP-binding protein ENG 99.0 9.9E-10 3.4E-14 103.5 8.8 88 190-277 256-350 (436)
110 1yrb_A ATP(GTP)binding protein 99.0 1.8E-09 6.3E-14 93.9 9.5 192 80-276 13-257 (262)
111 3clv_A RAB5 protein, putative; 99.0 2E-09 6.8E-14 88.9 9.2 102 171-275 93-203 (208)
112 1svi_A GTP-binding protein YSX 99.0 1.7E-09 5.8E-14 89.4 8.7 80 193-274 107-193 (195)
113 1znw_A Guanylate kinase, GMP k 99.0 2.2E-10 7.4E-15 97.0 3.2 69 67-140 7-76 (207)
114 2eyu_A Twitching motility prot 99.0 4.5E-10 1.6E-14 98.9 5.3 49 70-119 15-65 (261)
115 2gj8_A MNME, tRNA modification 99.0 3.8E-10 1.3E-14 92.4 4.3 78 191-277 83-167 (172)
116 2nzj_A GTP-binding protein REM 99.0 8.2E-10 2.8E-14 89.4 6.3 84 192-277 78-170 (175)
117 2erx_A GTP-binding protein DI- 99.0 1.5E-09 5.2E-14 87.3 7.8 83 191-275 74-166 (172)
118 1kao_A RAP2A; GTP-binding prot 98.9 1.7E-09 5.7E-14 86.5 7.9 83 192-276 75-166 (167)
119 4dhe_A Probable GTP-binding pr 98.9 3.4E-09 1.2E-13 89.7 10.0 85 193-277 117-212 (223)
120 2bov_A RAla, RAS-related prote 98.9 3.3E-09 1.1E-13 88.3 9.8 82 192-275 86-176 (206)
121 3tkl_A RAS-related protein RAB 98.9 2E-09 6.7E-14 89.0 8.3 84 192-277 89-180 (196)
122 1tf7_A KAIC; homohexamer, hexa 98.9 1.5E-09 5E-14 104.7 8.5 102 79-206 279-384 (525)
123 1u8z_A RAS-related protein RAL 98.9 3.3E-09 1.1E-13 84.8 9.3 82 192-275 76-166 (168)
124 2g6b_A RAS-related protein RAB 98.9 2E-09 6.9E-14 87.6 8.0 83 192-276 84-174 (180)
125 1z08_A RAS-related protein RAB 98.9 1.6E-09 5.6E-14 87.2 7.3 81 193-275 80-168 (170)
126 1z0j_A RAB-22, RAS-related pro 98.9 1.5E-09 5.1E-14 87.3 7.0 81 192-274 79-167 (170)
127 3bc1_A RAS-related protein RAB 98.9 5E-09 1.7E-13 86.0 10.1 83 192-276 94-185 (195)
128 3q85_A GTP-binding protein REM 98.9 1.5E-09 5.3E-14 87.4 6.7 83 192-276 76-167 (169)
129 2wji_A Ferrous iron transport 98.9 4.7E-10 1.6E-14 91.0 3.6 80 192-274 82-163 (165)
130 2qu8_A Putative nucleolar GTP- 98.9 1.1E-09 3.7E-14 93.7 6.1 83 193-275 110-204 (228)
131 1r2q_A RAS-related protein RAB 98.9 1.7E-09 5.7E-14 86.9 6.8 81 192-274 79-167 (170)
132 2lkc_A Translation initiation 98.9 5.5E-10 1.9E-14 90.8 4.0 83 193-278 80-173 (178)
133 2oil_A CATX-8, RAS-related pro 98.9 1.6E-09 5.6E-14 89.6 6.9 83 192-276 98-188 (193)
134 2hup_A RAS-related protein RAB 98.9 2.4E-09 8.1E-14 89.8 7.9 83 192-276 102-193 (201)
135 3ihw_A Centg3; RAS, centaurin, 98.9 6.9E-09 2.4E-13 85.7 10.7 85 191-276 85-180 (184)
136 1ega_A Protein (GTP-binding pr 98.9 8.2E-10 2.8E-14 99.2 5.3 160 80-273 7-172 (301)
137 1htw_A HI0065; nucleotide-bind 98.9 2.1E-10 7.3E-15 93.6 1.2 47 71-118 22-70 (158)
138 2a9k_A RAS-related protein RAL 98.9 3.2E-09 1.1E-13 86.7 8.4 85 191-277 89-182 (187)
139 3gee_A MNME, tRNA modification 98.9 6.9E-10 2.4E-14 105.8 4.8 79 192-275 313-397 (476)
140 2fg5_A RAB-22B, RAS-related pr 98.9 1.9E-09 6.7E-14 89.4 7.0 82 192-275 96-185 (192)
141 1wms_A RAB-9, RAB9, RAS-relate 98.9 8.7E-10 3E-14 89.6 4.8 81 193-275 81-173 (177)
142 1z0f_A RAB14, member RAS oncog 98.9 3E-09 1E-13 86.2 8.0 81 192-274 88-176 (179)
143 2ew1_A RAS-related protein RAB 98.9 1.1E-09 3.9E-14 92.1 5.6 83 192-276 99-189 (201)
144 2il1_A RAB12; G-protein, GDP, 98.9 2.9E-09 9.9E-14 88.4 7.9 84 191-275 98-189 (192)
145 2efe_B Small GTP-binding prote 98.9 5.4E-10 1.8E-14 91.1 3.3 83 192-276 85-175 (181)
146 2qtf_A Protein HFLX, GTP-bindi 98.9 1.8E-09 6.2E-14 99.5 7.1 82 192-276 258-354 (364)
147 2o52_A RAS-related protein RAB 98.9 1.8E-09 6E-14 90.4 6.4 82 192-275 98-187 (200)
148 3tw8_B RAS-related protein RAB 98.9 8E-10 2.7E-14 89.9 4.0 84 192-277 82-172 (181)
149 2p5s_A RAS and EF-hand domain 98.9 1.6E-09 5.5E-14 90.4 5.9 82 192-275 101-196 (199)
150 3kkq_A RAS-related protein M-R 98.9 4.7E-09 1.6E-13 85.9 8.5 82 192-275 90-181 (183)
151 1wf3_A GTP-binding protein; GT 98.9 1.4E-09 4.8E-14 97.7 5.8 79 192-274 87-171 (301)
152 1zd9_A ADP-ribosylation factor 98.9 9E-10 3.1E-14 91.1 4.1 82 192-275 91-184 (188)
153 2fn4_A P23, RAS-related protei 98.9 2.7E-09 9.4E-14 86.6 6.7 84 192-277 81-173 (181)
154 3t1o_A Gliding protein MGLA; G 98.9 5.7E-09 2E-13 85.9 8.5 81 192-276 98-192 (198)
155 1xzp_A Probable tRNA modificat 98.9 1.2E-09 4E-14 104.3 4.9 159 80-274 242-403 (482)
156 4bas_A ADP-ribosylation factor 98.9 2.3E-09 7.8E-14 88.8 6.1 84 192-277 87-190 (199)
157 2a5j_A RAS-related protein RAB 98.9 2.4E-09 8.1E-14 88.7 6.2 83 192-276 94-184 (191)
158 2bme_A RAB4A, RAS-related prot 98.9 1.9E-09 6.5E-14 88.4 5.4 82 193-276 84-173 (186)
159 1c1y_A RAS-related protein RAP 98.9 8.9E-09 3E-13 82.4 9.2 82 192-274 75-165 (167)
160 1g16_A RAS-related protein SEC 98.9 2.5E-09 8.6E-14 86.0 5.7 82 192-276 76-165 (170)
161 3con_A GTPase NRAS; structural 98.9 1.2E-08 4.3E-13 83.9 10.1 82 193-277 94-184 (190)
162 2hjg_A GTP-binding protein ENG 98.8 2.9E-09 1E-13 100.3 6.9 83 188-276 79-165 (436)
163 2dyk_A GTP-binding protein; GT 98.8 1.5E-09 5.2E-14 86.6 4.3 77 192-274 80-160 (161)
164 1zj6_A ADP-ribosylation factor 98.8 6.4E-09 2.2E-13 85.6 8.2 82 192-275 84-177 (187)
165 1ksh_A ARF-like protein 2; sma 98.8 4.1E-09 1.4E-13 86.6 7.0 82 193-276 87-180 (186)
166 2atv_A RERG, RAS-like estrogen 98.8 1.3E-08 4.6E-13 84.4 10.2 85 191-277 98-192 (196)
167 4dsu_A GTPase KRAS, isoform 2B 98.8 7.8E-09 2.7E-13 84.6 8.4 82 192-276 76-166 (189)
168 3k53_A Ferrous iron transport 98.8 9.4E-11 3.2E-15 103.4 -3.6 82 192-276 82-166 (271)
169 2gf9_A RAS-related protein RAB 98.8 2.6E-09 8.7E-14 88.2 5.3 83 192-276 95-185 (189)
170 1zbd_A Rabphilin-3A; G protein 98.8 7.8E-09 2.7E-13 86.2 8.4 82 192-275 81-170 (203)
171 2bcg_Y Protein YP2, GTP-bindin 98.8 1.5E-09 5.1E-14 90.9 3.9 83 192-276 81-171 (206)
172 3geh_A MNME, tRNA modification 98.8 3E-09 1E-13 101.0 6.4 79 192-276 304-384 (462)
173 1z2a_A RAS-related protein RAB 98.8 7.2E-10 2.5E-14 89.0 1.8 81 192-274 78-165 (168)
174 2y8e_A RAB-protein 6, GH09086P 98.8 4E-09 1.4E-13 85.5 6.2 81 192-274 87-175 (179)
175 1s96_A Guanylate kinase, GMP k 98.8 2E-09 7E-14 92.3 4.6 58 78-139 13-73 (219)
176 1z06_A RAS-related protein RAB 98.8 3.6E-09 1.2E-13 87.3 5.9 82 192-275 94-187 (189)
177 1upt_A ARL1, ADP-ribosylation 98.8 3.4E-09 1.2E-13 85.4 5.5 83 192-276 75-169 (171)
178 1cr0_A DNA primase/helicase; R 98.8 1E-08 3.4E-13 91.3 9.1 59 70-131 23-84 (296)
179 3tr0_A Guanylate kinase, GMP k 98.8 1.9E-09 6.4E-14 90.3 3.9 58 80-140 6-63 (205)
180 3th5_A RAS-related C3 botulinu 98.3 4.4E-10 1.5E-14 94.1 0.0 30 74-103 23-52 (204)
181 1r8s_A ADP-ribosylation factor 98.8 6.5E-09 2.2E-13 83.2 6.9 82 192-275 68-161 (164)
182 1vg8_A RAS-related protein RAB 98.8 2.2E-09 7.5E-14 89.6 4.2 82 192-275 81-174 (207)
183 2f9l_A RAB11B, member RAS onco 98.8 6.7E-09 2.3E-13 86.7 7.0 56 218-275 112-167 (199)
184 2wjg_A FEOB, ferrous iron tran 98.8 1E-09 3.6E-14 90.2 2.0 83 192-277 86-170 (188)
185 1fzq_A ADP-ribosylation factor 98.8 1.1E-08 3.8E-13 84.1 8.2 81 192-274 84-176 (181)
186 3b1v_A Ferrous iron uptake tra 98.8 9.9E-10 3.4E-14 97.3 1.8 80 192-274 81-162 (272)
187 1moz_A ARL1, ADP-ribosylation 98.8 1.9E-09 6.7E-14 88.0 3.5 82 193-276 87-180 (183)
188 2ce2_X GTPase HRAS; signaling 98.8 1.3E-08 4.4E-13 81.0 8.2 82 191-275 74-164 (166)
189 3iby_A Ferrous iron transport 98.8 1.2E-09 4.2E-14 95.8 2.3 78 192-273 84-164 (256)
190 2gf0_A GTP-binding protein DI- 98.8 2.2E-08 7.6E-13 82.8 9.7 82 191-275 79-170 (199)
191 2h57_A ADP-ribosylation factor 98.8 2.3E-09 7.7E-14 88.6 3.4 83 192-276 91-187 (190)
192 1x3s_A RAS-related protein RAB 98.8 1E-08 3.6E-13 84.4 7.4 82 192-276 88-178 (195)
193 2fu5_C RAS-related protein RAB 98.8 6.4E-09 2.2E-13 85.0 5.8 82 193-276 82-171 (183)
194 3cph_A RAS-related protein SEC 98.8 4.4E-09 1.5E-13 88.1 4.9 82 192-276 93-182 (213)
195 1mky_A Probable GTP-binding pr 98.8 1.3E-08 4.5E-13 95.9 8.6 162 82-277 2-167 (439)
196 1ek0_A Protein (GTP-binding pr 98.8 2.5E-09 8.7E-14 85.8 3.2 80 192-273 76-166 (170)
197 2b6h_A ADP-ribosylation factor 98.8 2.2E-09 7.4E-14 89.4 2.8 82 191-274 96-189 (192)
198 3kl4_A SRP54, signal recogniti 98.8 3.4E-09 1.2E-13 99.7 4.4 165 79-263 95-277 (433)
199 2iwr_A Centaurin gamma 1; ANK 98.8 2.1E-08 7.2E-13 81.5 8.6 84 192-276 73-169 (178)
200 3a1s_A Iron(II) transport prot 98.8 3.8E-09 1.3E-13 92.7 4.3 81 192-275 84-166 (258)
201 2yc2_C IFT27, small RAB-relate 98.8 2.3E-09 7.8E-14 89.3 2.4 101 173-275 75-191 (208)
202 2j1l_A RHO-related GTP-binding 98.8 1.3E-08 4.5E-13 86.0 7.1 84 192-276 106-209 (214)
203 4djt_A GTP-binding nuclear pro 98.7 1.9E-09 6.3E-14 91.1 1.7 84 192-277 85-176 (218)
204 3reg_A RHO-like small GTPase; 98.7 3.1E-09 1.1E-13 88.1 3.0 84 192-276 95-188 (194)
205 1u0l_A Probable GTPase ENGC; p 98.7 1.9E-09 6.5E-14 96.7 1.8 59 79-137 167-229 (301)
206 3sjy_A Translation initiation 98.7 2.1E-08 7.1E-13 93.5 8.9 82 192-275 99-191 (403)
207 3oes_A GTPase rhebl1; small GT 98.7 1.1E-09 3.9E-14 91.5 0.3 84 192-277 96-188 (201)
208 2hxs_A RAB-26, RAS-related pro 98.7 8.7E-09 3E-13 83.6 5.6 82 192-275 80-172 (178)
209 2gza_A Type IV secretion syste 98.7 5.2E-10 1.8E-14 103.0 -2.0 62 73-136 166-230 (361)
210 2fh5_B SR-beta, signal recogni 98.7 1.5E-08 5.1E-13 85.2 7.2 26 80-105 6-31 (214)
211 3cbq_A GTP-binding protein REM 98.7 4.8E-08 1.6E-12 81.4 10.2 84 191-276 96-188 (195)
212 3t5g_A GTP-binding protein RHE 98.7 3.4E-09 1.2E-13 86.5 2.9 84 192-277 78-170 (181)
213 3cpj_B GTP-binding protein YPT 98.7 3.7E-09 1.3E-13 90.0 3.0 81 193-275 87-175 (223)
214 4dkx_A RAS-related protein RAB 98.7 1.3E-08 4.4E-13 87.0 6.1 97 174-274 65-174 (216)
215 4dcu_A GTP-binding protein ENG 98.7 1.2E-08 4.2E-13 96.5 6.5 82 188-275 99-184 (456)
216 2i3b_A HCR-ntpase, human cance 98.7 1.2E-09 4.1E-14 91.7 -0.5 53 81-136 1-53 (189)
217 2g3y_A GTP-binding protein GEM 98.7 3.2E-08 1.1E-12 84.1 8.3 82 193-276 113-203 (211)
218 1lnz_A SPO0B-associated GTP-bi 98.7 1.4E-08 4.7E-13 92.9 6.2 80 192-276 237-330 (342)
219 4gzl_A RAS-related C3 botulinu 98.7 3.7E-09 1.3E-13 88.8 2.3 81 192-273 102-202 (204)
220 1oix_A RAS-related protein RAB 98.7 2.5E-09 8.6E-14 89.0 1.2 53 219-273 137-189 (191)
221 2q3h_A RAS homolog gene family 98.7 9.1E-09 3.1E-13 85.6 4.4 86 192-278 92-197 (201)
222 1vma_A Cell division protein F 98.7 4.1E-08 1.4E-12 88.3 8.8 42 79-120 102-144 (306)
223 2ehv_A Hypothetical protein PH 98.7 5.4E-09 1.9E-13 89.9 2.9 58 78-136 27-87 (251)
224 1tf7_A KAIC; homohexamer, hexa 98.7 3.4E-09 1.2E-13 102.2 1.8 69 69-138 25-98 (525)
225 3thx_B DNA mismatch repair pro 98.7 1.9E-09 6.4E-14 109.8 -0.0 36 69-104 660-696 (918)
226 1lw7_A Transcriptional regulat 98.7 1.3E-09 4.5E-14 100.2 -1.1 55 81-137 170-233 (365)
227 3bwd_D RAC-like GTP-binding pr 98.7 7.3E-09 2.5E-13 84.4 3.5 82 192-274 80-179 (182)
228 1wb1_A Translation elongation 98.7 5.4E-08 1.8E-12 92.9 10.0 102 172-275 74-188 (482)
229 1zu4_A FTSY; GTPase, signal re 98.7 2.4E-08 8.1E-13 90.5 6.8 169 73-264 96-294 (320)
230 2cxx_A Probable GTP-binding pr 98.7 1.3E-08 4.5E-13 83.5 4.7 58 217-277 123-185 (190)
231 3dm5_A SRP54, signal recogniti 98.7 1.6E-08 5.5E-13 95.2 5.8 165 80-264 99-279 (443)
232 1mh1_A RAC1; GTP-binding, GTPa 98.7 1E-08 3.5E-13 83.7 3.9 83 192-275 77-179 (186)
233 1ewq_A DNA mismatch repair pro 98.7 5.7E-09 1.9E-13 104.6 2.8 98 69-206 566-672 (765)
234 3o47_A ADP-ribosylation factor 98.7 9.8E-09 3.4E-13 93.2 4.0 82 192-275 233-326 (329)
235 2fv8_A H6, RHO-related GTP-bin 98.7 1.4E-08 4.8E-13 85.2 4.5 83 192-275 97-199 (207)
236 3euj_A Chromosome partition pr 98.7 8.9E-09 3.1E-13 98.0 3.5 50 71-120 19-69 (483)
237 2h17_A ADP-ribosylation factor 98.7 8.3E-09 2.8E-13 84.6 2.9 79 192-272 89-179 (181)
238 1nlf_A Regulatory protein REPA 98.6 6.2E-08 2.1E-12 85.5 8.5 29 79-107 28-56 (279)
239 2atx_A Small GTP binding prote 98.6 2.3E-08 8E-13 82.6 5.4 82 192-274 90-191 (194)
240 3c5c_A RAS-like protein 12; GD 98.6 2.6E-08 8.8E-13 82.3 5.4 81 192-274 92-184 (187)
241 3i8s_A Ferrous iron transport 98.6 2.5E-09 8.7E-14 94.6 -1.0 80 192-274 86-167 (274)
242 2yv5_A YJEQ protein; hydrolase 98.6 7.1E-09 2.4E-13 93.1 1.6 58 79-137 163-224 (302)
243 2gco_A H9, RHO-related GTP-bin 98.6 6.9E-09 2.4E-13 86.7 1.3 82 192-274 97-198 (201)
244 2ffh_A Protein (FFH); SRP54, s 98.6 7E-08 2.4E-12 90.5 7.9 170 73-264 91-277 (425)
245 3q3j_B RHO-related GTP-binding 98.6 1.9E-08 6.6E-13 85.1 3.8 83 192-275 99-202 (214)
246 1sq5_A Pantothenate kinase; P- 98.6 3.8E-08 1.3E-12 88.5 5.8 54 79-133 78-134 (308)
247 2o8b_B DNA mismatch repair pro 98.6 2E-08 6.7E-13 103.6 4.3 102 69-206 769-882 (1022)
248 3lvq_E ARF-GAP with SH3 domain 98.6 2.2E-08 7.6E-13 95.5 4.0 84 192-277 390-485 (497)
249 4eun_A Thermoresistant glucoki 98.5 9.8E-08 3.4E-12 80.0 6.6 55 79-137 27-81 (200)
250 1odf_A YGR205W, hypothetical 3 98.5 8.7E-09 3E-13 92.1 -0.1 122 79-206 29-166 (290)
251 1lvg_A Guanylate kinase, GMP k 98.5 3E-08 1E-12 83.4 3.1 27 80-106 3-29 (198)
252 2x77_A ADP-ribosylation factor 98.5 1.5E-08 5E-13 83.5 1.1 84 192-277 90-185 (189)
253 3thx_A DNA mismatch repair pro 98.5 9.9E-08 3.4E-12 97.4 7.4 34 69-102 649-683 (934)
254 2j37_W Signal recognition part 98.5 2.6E-08 8.8E-13 95.4 2.7 181 80-273 100-310 (504)
255 2zej_A Dardarin, leucine-rich 98.5 7.4E-08 2.5E-12 79.2 5.0 24 82-105 3-26 (184)
256 1m7b_A RND3/RHOE small GTP-bin 98.5 3E-08 1E-12 81.4 2.6 82 192-274 79-181 (184)
257 2obl_A ESCN; ATPase, hydrolase 98.5 4.2E-08 1.4E-12 89.8 3.7 61 55-117 46-108 (347)
258 1gwn_A RHO-related GTP-binding 98.5 3.2E-08 1.1E-12 83.3 2.5 82 192-274 100-202 (205)
259 2j0v_A RAC-like GTP-binding pr 98.5 2.4E-08 8.2E-13 83.8 1.7 83 192-275 81-179 (212)
260 2cjw_A GTP-binding protein GEM 98.5 3.4E-07 1.1E-11 76.1 8.4 83 191-275 80-171 (192)
261 1wb9_A DNA mismatch repair pro 98.5 4E-08 1.4E-12 99.0 3.1 37 69-105 595-631 (800)
262 1zp6_A Hypothetical protein AT 98.5 5.7E-08 2E-12 80.3 3.4 55 79-137 7-62 (191)
263 1jwy_B Dynamin A GTPase domain 98.5 1.5E-07 5E-12 84.1 6.2 84 192-276 168-262 (315)
264 3qkt_A DNA double-strand break 98.5 3.5E-07 1.2E-11 83.2 8.8 23 81-103 23-45 (339)
265 3c8u_A Fructokinase; YP_612366 98.5 6.5E-08 2.2E-12 81.7 3.6 31 78-108 19-49 (208)
266 3a00_A Guanylate kinase, GMP k 98.5 6.5E-08 2.2E-12 80.2 3.5 28 81-108 1-28 (186)
267 1j8m_F SRP54, signal recogniti 98.5 8E-08 2.7E-12 86.1 4.3 171 75-266 92-281 (297)
268 1t9h_A YLOQ, probable GTPase E 98.5 1.2E-08 4.2E-13 91.8 -1.1 57 79-137 171-232 (307)
269 1p9r_A General secretion pathw 98.5 8.4E-08 2.9E-12 89.9 4.3 47 72-119 159-206 (418)
270 1qhl_A Protein (cell division 98.5 5.3E-09 1.8E-13 90.2 -3.7 43 75-119 23-66 (227)
271 3t34_A Dynamin-related protein 98.5 5.1E-08 1.7E-12 89.4 2.7 87 180-269 158-254 (360)
272 1pzn_A RAD51, DNA repair and r 98.4 9E-08 3.1E-12 87.6 4.0 39 79-117 129-175 (349)
273 2qag_B Septin-6, protein NEDD5 98.4 1.9E-08 6.5E-13 94.3 -0.5 34 72-105 30-66 (427)
274 3dpu_A RAB family protein; roc 98.4 1.7E-08 5.8E-13 97.4 -1.2 83 192-276 122-208 (535)
275 4e22_A Cytidylate kinase; P-lo 98.4 4.1E-08 1.4E-12 85.7 1.4 58 79-136 25-95 (252)
276 2aka_B Dynamin-1; fusion prote 98.4 2.8E-07 9.6E-12 81.5 6.8 57 217-273 193-250 (299)
277 3asz_A Uridine kinase; cytidin 98.4 1.4E-07 5E-12 79.3 4.2 38 79-118 4-41 (211)
278 2ewv_A Twitching motility prot 98.4 5.6E-08 1.9E-12 89.8 1.5 55 78-136 133-189 (372)
279 3lnc_A Guanylate kinase, GMP k 98.4 7.9E-08 2.7E-12 82.4 2.2 37 71-107 16-54 (231)
280 2cvh_A DNA repair and recombin 98.4 7.3E-07 2.5E-11 75.0 8.1 37 79-117 18-54 (220)
281 3gj0_A GTP-binding nuclear pro 98.4 3.6E-08 1.2E-12 83.5 -0.1 80 192-275 88-174 (221)
282 2ywe_A GTP-binding protein LEP 98.4 4.6E-07 1.6E-11 88.5 7.4 83 190-275 95-183 (600)
283 3j2k_7 ERF3, eukaryotic polype 98.4 1.1E-06 3.8E-11 82.8 9.8 98 171-268 95-217 (439)
284 3cb4_D GTP-binding protein LEP 98.4 3.9E-07 1.3E-11 89.0 6.5 83 190-275 93-181 (599)
285 3lxx_A GTPase IMAP family memb 98.4 4.3E-07 1.5E-11 78.0 6.0 27 80-106 28-54 (239)
286 3szr_A Interferon-induced GTP- 98.4 3.5E-08 1.2E-12 96.7 -1.0 58 80-137 44-106 (608)
287 4a74_A DNA repair and recombin 98.4 2.6E-07 8.8E-12 78.3 4.4 29 79-107 23-51 (231)
288 2kjq_A DNAA-related protein; s 98.3 1.7E-07 5.8E-12 75.3 2.9 30 80-109 35-64 (149)
289 2wkq_A NPH1-1, RAS-related C3 98.3 1.8E-07 6.3E-12 83.6 3.4 82 192-274 227-328 (332)
290 3p26_A Elongation factor 1 alp 98.3 1.7E-07 5.7E-12 89.4 3.2 95 171-265 111-227 (483)
291 2xtp_A GTPase IMAP family memb 98.3 1.2E-07 4E-12 82.6 2.0 82 192-276 106-208 (260)
292 3t5d_A Septin-7; GTP-binding p 98.3 2.9E-07 9.8E-12 81.1 4.4 79 193-275 117-203 (274)
293 3tr5_A RF-3, peptide chain rel 98.3 5.1E-07 1.7E-11 87.0 6.5 26 251-276 252-277 (528)
294 2w0m_A SSO2452; RECA, SSPF, un 98.3 2.3E-07 7.8E-12 78.5 3.6 48 71-118 11-61 (235)
295 3lxw_A GTPase IMAP family memb 98.3 2.4E-07 8.3E-12 80.5 3.7 26 80-105 20-45 (247)
296 2x8a_A Nuclear valosin-contain 98.3 2.2E-07 7.4E-12 82.2 3.1 63 71-136 35-98 (274)
297 3llu_A RAS-related GTP-binding 98.3 1.7E-07 6E-12 77.8 2.4 81 192-273 96-194 (196)
298 1kk1_A EIF2gamma; initiation o 98.3 9.3E-07 3.2E-11 82.4 7.6 101 173-275 85-199 (410)
299 1s0u_A EIF-2-gamma, translatio 98.3 1.7E-06 5.9E-11 80.6 9.3 103 173-275 83-197 (408)
300 1kgd_A CASK, peripheral plasma 98.3 4E-07 1.4E-11 75.1 4.3 35 80-114 4-40 (180)
301 2j69_A Bacterial dynamin-like 98.3 1.9E-06 6.4E-11 85.7 9.4 27 78-104 66-92 (695)
302 3izy_P Translation initiation 98.3 2E-08 6.9E-13 96.8 -5.0 81 192-275 76-167 (537)
303 2c78_A Elongation factor TU-A; 98.3 1.7E-07 5.8E-12 87.3 1.2 25 81-105 11-35 (405)
304 3jvv_A Twitching mobility prot 98.2 6.1E-07 2.1E-11 82.3 4.5 39 78-116 120-160 (356)
305 3l0i_B RAS-related protein RAB 98.2 4.7E-09 1.6E-13 87.5 -8.9 82 192-275 106-195 (199)
306 2elf_A Protein translation elo 98.2 1.1E-06 3.8E-11 81.0 6.2 83 190-276 82-180 (370)
307 3uie_A Adenylyl-sulfate kinase 98.2 3.4E-07 1.2E-11 76.7 2.4 46 73-118 16-64 (200)
308 1rz3_A Hypothetical protein rb 98.2 9E-07 3.1E-11 74.2 4.8 44 79-122 20-64 (201)
309 2bdt_A BH3686; alpha-beta prot 98.2 4.8E-07 1.6E-11 74.8 2.9 36 81-118 2-37 (189)
310 1dar_A EF-G, elongation factor 98.2 2E-06 6.8E-11 85.5 7.7 27 250-276 256-282 (691)
311 2oap_1 GSPE-2, type II secreti 98.2 7.5E-07 2.6E-11 85.5 4.5 45 73-117 251-297 (511)
312 1d2e_A Elongation factor TU (E 98.2 1.2E-06 4.1E-11 81.4 5.8 104 171-275 66-194 (397)
313 1g7s_A Translation initiation 98.2 2.5E-06 8.7E-11 83.2 8.1 84 192-275 94-217 (594)
314 2j41_A Guanylate kinase; GMP, 98.2 1.1E-06 3.8E-11 73.2 4.1 30 79-108 4-33 (207)
315 2x2e_A Dynamin-1; nitration, h 98.2 1.3E-07 4.5E-12 86.4 -1.8 55 218-272 199-254 (353)
316 3tau_A Guanylate kinase, GMP k 98.2 1.2E-06 4E-11 73.9 4.2 29 79-107 6-34 (208)
317 3qq5_A Small GTP-binding prote 98.1 1.1E-07 3.7E-12 89.3 -2.8 80 192-275 114-195 (423)
318 2bbw_A Adenylate kinase 4, AK4 98.1 5.6E-07 1.9E-11 77.8 1.9 35 80-114 26-64 (246)
319 2px0_A Flagellar biosynthesis 98.1 2.5E-06 8.4E-11 76.3 6.0 161 77-263 101-278 (296)
320 2vp4_A Deoxynucleoside kinase; 98.1 1.4E-06 4.8E-11 74.6 4.1 37 79-118 18-54 (230)
321 2rdo_7 EF-G, elongation factor 98.1 7.7E-06 2.6E-10 81.4 9.7 26 250-275 262-287 (704)
322 2qag_A Septin-2, protein NEDD5 98.1 9.7E-07 3.3E-11 81.0 2.9 25 82-106 38-62 (361)
323 1knq_A Gluconate kinase; ALFA/ 98.1 1.9E-06 6.6E-11 70.1 4.5 53 79-136 6-59 (175)
324 3ney_A 55 kDa erythrocyte memb 98.1 1.6E-06 5.4E-11 73.0 3.7 27 80-106 18-44 (197)
325 2xex_A Elongation factor G; GT 98.1 3.6E-06 1.2E-10 83.6 6.5 27 250-276 254-280 (693)
326 3izq_1 HBS1P, elongation facto 98.1 5.9E-07 2E-11 88.1 0.8 95 172-266 246-362 (611)
327 3tqc_A Pantothenate kinase; bi 98.1 3.9E-06 1.3E-10 75.8 5.7 44 81-124 92-138 (321)
328 1zo1_I IF2, translation initia 98.1 1.6E-07 5.6E-12 89.8 -3.6 81 192-272 75-163 (501)
329 1n0w_A DNA repair protein RAD5 98.1 2.2E-06 7.6E-11 73.1 3.9 58 79-136 22-88 (243)
330 3mca_A HBS1, elongation factor 98.0 7.6E-07 2.6E-11 87.0 0.9 24 81-104 177-200 (592)
331 1ls1_A Signal recognition part 98.0 3.3E-06 1.1E-10 75.4 5.0 47 73-120 91-138 (295)
332 3r7w_A Gtpase1, GTP-binding pr 98.0 2.1E-06 7.2E-11 76.9 3.5 24 81-104 3-26 (307)
333 3vaa_A Shikimate kinase, SK; s 98.0 2.4E-06 8.1E-11 71.4 3.3 39 67-105 10-49 (199)
334 3zvr_A Dynamin-1; hydrolase, D 98.0 2.7E-06 9.2E-11 85.0 4.1 79 193-272 189-274 (772)
335 3c5h_A Glucocorticoid receptor 98.0 6.9E-06 2.4E-10 71.4 6.1 80 192-274 163-253 (255)
336 3avx_A Elongation factor TS, e 98.0 5.2E-06 1.8E-10 86.0 6.0 103 171-274 359-484 (1289)
337 2v3c_C SRP54, signal recogniti 98.0 4.1E-08 1.4E-12 92.4 -9.0 40 81-120 99-139 (432)
338 1zun_B Sulfate adenylate trans 98.0 1.9E-06 6.6E-11 80.9 2.3 93 173-265 106-213 (434)
339 3kta_A Chromosome segregation 98.0 4.2E-06 1.4E-10 68.5 4.0 26 83-108 28-53 (182)
340 3pih_A Uvrabc system protein A 98.0 1.1E-05 3.6E-10 82.3 7.7 84 157-240 443-560 (916)
341 1kag_A SKI, shikimate kinase I 98.0 3.5E-06 1.2E-10 68.2 3.3 26 81-106 4-29 (173)
342 1ni3_A YCHF GTPase, YCHF GTP-b 97.9 5.1E-06 1.7E-10 77.1 4.3 25 79-103 18-42 (392)
343 2h5e_A Peptide chain release f 97.9 9.2E-06 3.2E-10 78.3 5.9 26 250-275 252-277 (529)
344 1ixz_A ATP-dependent metallopr 97.9 1.8E-06 6.1E-11 74.8 0.8 44 72-118 41-85 (254)
345 3vqt_A RF-3, peptide chain rel 97.9 4.8E-06 1.6E-10 80.6 3.9 26 250-275 269-294 (548)
346 1iy2_A ATP-dependent metallopr 97.9 1.9E-06 6.5E-11 75.8 0.9 44 72-118 65-109 (278)
347 3cr8_A Sulfate adenylyltranfer 97.9 4.7E-06 1.6E-10 80.6 3.2 37 79-115 367-405 (552)
348 3j25_A Tetracycline resistance 97.9 6E-06 2.1E-10 81.3 3.9 27 249-275 212-238 (638)
349 3ec2_A DNA replication protein 97.9 3.4E-06 1.2E-10 69.1 1.7 28 80-107 37-64 (180)
350 1jny_A EF-1-alpha, elongation 97.9 5.5E-06 1.9E-10 77.8 3.3 96 170-265 83-202 (435)
351 2dr3_A UPF0273 protein PH0284; 97.9 7.3E-06 2.5E-10 69.9 3.8 58 79-136 21-79 (247)
352 2yvu_A Probable adenylyl-sulfa 97.8 9.9E-06 3.4E-10 66.6 4.0 43 73-115 5-48 (186)
353 3nwj_A ATSK2; P loop, shikimat 97.8 3.1E-06 1.1E-10 73.9 0.3 51 54-105 17-72 (250)
354 2ygr_A Uvrabc system protein A 97.8 5.8E-05 2E-09 77.1 9.3 81 160-240 503-617 (993)
355 2pez_A Bifunctional 3'-phospho 97.8 1.2E-05 4.1E-10 65.7 3.5 31 79-109 3-33 (179)
356 2xxa_A Signal recognition part 97.8 0.00019 6.5E-09 67.4 11.7 141 80-231 99-255 (433)
357 2r6f_A Excinuclease ABC subuni 97.7 3.1E-05 1.1E-09 78.9 6.6 81 160-240 486-600 (972)
358 1f60_A Elongation factor EEF1A 97.7 9.1E-06 3.1E-10 76.9 1.9 94 172-265 86-201 (458)
359 1r5b_A Eukaryotic peptide chai 97.7 4.6E-05 1.6E-09 72.2 6.4 95 172-266 122-242 (467)
360 2vf7_A UVRA2, excinuclease ABC 97.7 6.2E-05 2.1E-09 76.1 7.5 80 161-240 362-475 (842)
361 2qt1_A Nicotinamide riboside k 97.7 2.2E-05 7.6E-10 65.6 3.5 36 79-117 19-54 (207)
362 1cke_A CK, MSSA, protein (cyti 97.7 2.2E-05 7.4E-10 66.4 3.4 25 81-105 5-29 (227)
363 1sxj_E Activator 1 40 kDa subu 97.7 2.1E-05 7.1E-10 71.1 3.3 55 81-137 36-92 (354)
364 3lda_A DNA repair protein RAD5 97.6 2E-05 7E-10 73.2 3.2 57 79-135 176-241 (400)
365 3m6a_A ATP-dependent protease 97.6 2.2E-05 7.6E-10 75.8 3.5 42 72-113 99-141 (543)
366 1np6_A Molybdopterin-guanine d 97.6 4.1E-05 1.4E-09 63.0 4.4 39 81-119 6-45 (174)
367 4eaq_A DTMP kinase, thymidylat 97.6 6.5E-05 2.2E-09 64.3 5.5 29 79-107 24-52 (229)
368 1w1w_A Structural maintenance 97.6 3.3E-05 1.1E-09 72.3 3.8 28 80-107 25-52 (430)
369 3hr8_A Protein RECA; alpha and 97.6 4.6E-05 1.6E-09 69.7 4.3 56 79-136 59-115 (356)
370 1jjv_A Dephospho-COA kinase; P 97.6 3.7E-05 1.3E-09 64.1 3.3 23 82-104 3-25 (206)
371 2qor_A Guanylate kinase; phosp 97.6 3.7E-05 1.3E-09 64.3 3.3 28 79-106 10-37 (204)
372 2if2_A Dephospho-COA kinase; a 97.5 4.5E-05 1.5E-09 63.4 3.2 21 83-103 3-23 (204)
373 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 6.5E-05 2.2E-09 60.0 3.9 24 81-104 23-46 (149)
374 1svm_A Large T antigen; AAA+ f 97.5 3.7E-05 1.3E-09 70.9 2.6 60 71-137 158-218 (377)
375 4fn5_A EF-G 1, elongation fact 97.5 0.00016 5.5E-09 72.0 7.4 44 188-231 105-152 (709)
376 2o5v_A DNA replication and rep 97.5 5.7E-05 2E-09 69.2 3.8 60 178-237 267-353 (359)
377 3t61_A Gluconokinase; PSI-biol 97.5 7.4E-05 2.5E-09 62.1 3.9 35 81-118 18-52 (202)
378 1xjc_A MOBB protein homolog; s 97.4 9.3E-05 3.2E-09 60.6 4.2 39 81-119 4-43 (169)
379 1m7g_A Adenylylsulfate kinase; 97.4 5.3E-05 1.8E-09 63.6 2.4 31 79-109 23-54 (211)
380 2r6a_A DNAB helicase, replicat 97.4 0.00053 1.8E-08 64.6 9.3 41 79-119 201-243 (454)
381 3ice_A Transcription terminati 97.4 9.2E-05 3.1E-09 68.4 3.9 55 52-106 131-199 (422)
382 1in4_A RUVB, holliday junction 97.4 5.5E-05 1.9E-09 68.4 2.1 24 82-105 52-75 (334)
383 3cm0_A Adenylate kinase; ATP-b 97.4 8.3E-05 2.8E-09 60.7 2.9 26 80-105 3-28 (186)
384 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00017 5.8E-09 68.9 5.2 61 72-135 56-117 (499)
385 3kb2_A SPBC2 prophage-derived 97.3 0.00011 3.9E-09 58.8 3.2 24 82-105 2-25 (173)
386 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00012 4.2E-09 67.8 3.2 26 79-104 20-45 (396)
387 1y63_A LMAJ004144AAA protein; 97.2 0.0002 6.7E-09 58.8 3.9 25 80-104 9-33 (184)
388 2plr_A DTMP kinase, probable t 97.2 0.00036 1.2E-08 57.8 5.3 32 80-111 3-34 (213)
389 1qhx_A CPT, protein (chloramph 97.2 0.00021 7.3E-09 57.8 3.6 26 81-106 3-28 (178)
390 1q3t_A Cytidylate kinase; nucl 97.2 0.0002 6.8E-09 61.2 3.5 28 78-105 13-40 (236)
391 2z0h_A DTMP kinase, thymidylat 97.2 0.00033 1.1E-08 57.5 4.6 36 83-118 2-37 (197)
392 3qks_A DNA double-strand break 97.2 0.0002 7E-09 60.0 3.3 25 81-105 23-47 (203)
393 2v54_A DTMP kinase, thymidylat 97.1 0.00028 9.5E-09 58.3 4.0 26 80-105 3-28 (204)
394 1kht_A Adenylate kinase; phosp 97.1 0.00026 8.8E-09 57.7 3.6 27 81-107 3-29 (192)
395 3lw7_A Adenylate kinase relate 97.1 0.00024 8.1E-09 56.7 3.2 20 82-101 2-21 (179)
396 2jaq_A Deoxyguanosine kinase; 97.1 0.00025 8.6E-09 58.4 3.2 24 83-106 2-25 (205)
397 2rhm_A Putative kinase; P-loop 97.1 0.00025 8.7E-09 57.9 3.2 26 80-105 4-29 (193)
398 1uf9_A TT1252 protein; P-loop, 97.1 0.00031 1E-08 57.9 3.5 26 79-104 6-31 (203)
399 1gtv_A TMK, thymidylate kinase 97.1 0.00012 4.2E-09 61.0 1.0 26 83-108 2-27 (214)
400 2ged_A SR-beta, signal recogni 97.1 0.00038 1.3E-08 56.7 3.9 26 80-105 47-72 (193)
401 2zr9_A Protein RECA, recombina 97.1 0.0005 1.7E-08 62.6 5.0 55 79-135 59-114 (349)
402 2c95_A Adenylate kinase 1; tra 97.0 0.00033 1.1E-08 57.4 3.4 27 79-105 7-33 (196)
403 1via_A Shikimate kinase; struc 97.0 0.00027 9.2E-09 57.3 2.7 23 83-105 6-28 (175)
404 1vht_A Dephospho-COA kinase; s 97.0 0.00039 1.3E-08 58.4 3.7 24 80-103 3-26 (218)
405 3k1j_A LON protease, ATP-depen 97.0 0.00048 1.6E-08 67.2 4.8 48 72-119 50-100 (604)
406 4edh_A DTMP kinase, thymidylat 97.0 0.00067 2.3E-08 57.4 5.2 41 79-120 4-45 (213)
407 1ly1_A Polynucleotide kinase; 97.0 0.00036 1.2E-08 56.2 3.3 22 82-103 3-24 (181)
408 2wwf_A Thymidilate kinase, put 97.0 0.00036 1.2E-08 58.0 3.3 28 79-106 8-35 (212)
409 2p5t_B PEZT; postsegregational 97.0 0.0003 1E-08 60.9 2.8 39 79-118 30-68 (253)
410 1aky_A Adenylate kinase; ATP:A 97.0 0.00043 1.5E-08 58.3 3.5 27 79-105 2-28 (220)
411 1ex7_A Guanylate kinase; subst 97.0 0.0004 1.4E-08 57.7 3.2 24 83-106 3-26 (186)
412 1nn5_A Similar to deoxythymidy 97.0 0.00041 1.4E-08 57.7 3.3 27 80-106 8-34 (215)
413 3trf_A Shikimate kinase, SK; a 97.0 0.00042 1.4E-08 56.4 3.3 25 81-105 5-29 (185)
414 2pbr_A DTMP kinase, thymidylat 97.0 0.00065 2.2E-08 55.4 4.4 27 83-109 2-28 (195)
415 2ze6_A Isopentenyl transferase 97.0 0.00041 1.4E-08 60.2 3.3 24 82-105 2-25 (253)
416 3iij_A Coilin-interacting nucl 96.9 0.00041 1.4E-08 56.4 3.1 26 80-105 10-35 (180)
417 4ag6_A VIRB4 ATPase, type IV s 96.9 0.0005 1.7E-08 63.3 3.9 36 80-115 34-70 (392)
418 1tev_A UMP-CMP kinase; ploop, 96.9 0.00048 1.6E-08 56.2 3.4 25 81-105 3-27 (196)
419 4tmk_A Protein (thymidylate ki 96.9 0.00073 2.5E-08 57.2 4.6 45 80-124 2-47 (213)
420 1nks_A Adenylate kinase; therm 96.9 0.00041 1.4E-08 56.5 2.9 26 83-108 3-28 (194)
421 1n0u_A EF-2, elongation factor 96.9 0.00032 1.1E-08 71.1 2.7 24 81-104 19-42 (842)
422 1jal_A YCHF protein; nucleotid 96.9 0.00059 2E-08 62.5 3.6 24 81-104 2-25 (363)
423 2cdn_A Adenylate kinase; phosp 96.8 0.00068 2.3E-08 56.1 3.7 26 80-105 19-44 (201)
424 2bwj_A Adenylate kinase 5; pho 96.8 0.00056 1.9E-08 56.1 3.1 25 81-105 12-36 (199)
425 2vli_A Antibiotic resistance p 96.8 0.00046 1.6E-08 55.9 2.4 26 80-105 4-29 (183)
426 3r20_A Cytidylate kinase; stru 96.8 0.00062 2.1E-08 58.6 3.3 26 80-105 8-33 (233)
427 1zd8_A GTP:AMP phosphotransfer 96.8 0.00065 2.2E-08 57.5 3.3 26 80-105 6-31 (227)
428 1nrj_B SR-beta, signal recogni 96.8 0.00083 2.8E-08 55.9 3.8 26 80-105 11-36 (218)
429 3fb4_A Adenylate kinase; psych 96.8 0.00064 2.2E-08 56.8 3.1 23 83-105 2-24 (216)
430 1gvn_B Zeta; postsegregational 96.8 0.00064 2.2E-08 60.1 3.1 26 80-105 32-57 (287)
431 3dl0_A Adenylate kinase; phosp 96.8 0.00072 2.5E-08 56.5 3.3 23 83-105 2-24 (216)
432 4a9a_A Ribosome-interacting GT 96.8 0.00056 1.9E-08 63.0 2.7 26 79-104 69-95 (376)
433 1zak_A Adenylate kinase; ATP:A 96.7 0.00068 2.3E-08 57.1 3.0 26 80-105 4-29 (222)
434 1ukz_A Uridylate kinase; trans 96.7 0.00088 3E-08 55.4 3.6 26 80-105 14-39 (203)
435 3ake_A Cytidylate kinase; CMP 96.7 0.00073 2.5E-08 55.8 3.1 23 83-105 4-26 (208)
436 3lv8_A DTMP kinase, thymidylat 96.7 0.0012 4.2E-08 56.8 4.5 41 80-120 26-67 (236)
437 2iyv_A Shikimate kinase, SK; t 96.7 0.00065 2.2E-08 55.3 2.7 24 82-105 3-26 (184)
438 3v9p_A DTMP kinase, thymidylat 96.7 0.00079 2.7E-08 57.6 3.2 29 79-107 23-51 (227)
439 3umf_A Adenylate kinase; rossm 96.7 0.0009 3.1E-08 56.9 3.4 26 80-105 28-53 (217)
440 1ypw_A Transitional endoplasmi 96.7 0.00058 2E-08 68.9 2.3 41 79-120 236-276 (806)
441 2dby_A GTP-binding protein; GD 96.7 0.00075 2.6E-08 61.9 2.8 22 83-104 3-24 (368)
442 1qf9_A UMP/CMP kinase, protein 96.7 0.00085 2.9E-08 54.5 2.9 25 81-105 6-30 (194)
443 1f2t_B RAD50 ABC-ATPase; DNA d 96.7 0.0011 3.6E-08 53.0 3.3 36 172-207 52-96 (148)
444 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.00092 3.1E-08 58.0 3.2 27 80-106 3-29 (260)
445 1e6c_A Shikimate kinase; phosp 96.6 0.00085 2.9E-08 53.8 2.8 24 82-105 3-26 (173)
446 2pt5_A Shikimate kinase, SK; a 96.6 0.001 3.4E-08 53.2 3.1 23 83-105 2-24 (168)
447 3tlx_A Adenylate kinase 2; str 96.6 0.001 3.6E-08 57.1 3.4 27 79-105 27-53 (243)
448 1zuh_A Shikimate kinase; alpha 96.6 0.0011 3.6E-08 53.2 3.2 25 81-105 7-31 (168)
449 3be4_A Adenylate kinase; malar 96.6 0.0009 3.1E-08 56.3 2.9 26 80-105 4-29 (217)
450 4a1f_A DNAB helicase, replicat 96.6 0.0042 1.4E-07 56.3 7.4 40 79-118 44-84 (338)
451 1sxj_C Activator 1 40 kDa subu 96.6 0.00071 2.4E-08 60.9 2.2 38 80-117 43-83 (340)
452 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0011 3.7E-08 60.5 3.3 27 80-106 21-49 (359)
453 4ad8_A DNA repair protein RECN 96.6 0.00055 1.9E-08 65.5 1.4 30 178-207 399-432 (517)
454 1lv7_A FTSH; alpha/beta domain 96.6 0.001 3.6E-08 57.2 2.9 24 83-106 47-70 (257)
455 1ak2_A Adenylate kinase isoenz 96.5 0.0014 4.8E-08 55.7 3.6 29 77-105 12-40 (233)
456 2w58_A DNAI, primosome compone 96.5 0.0022 7.4E-08 52.9 4.6 27 82-108 55-81 (202)
457 3auy_A DNA double-strand break 96.5 0.0012 4.1E-08 60.4 3.2 21 82-102 26-46 (371)
458 1fnn_A CDC6P, cell division co 96.5 0.0043 1.5E-07 56.0 6.9 26 83-108 46-71 (389)
459 2xb4_A Adenylate kinase; ATP-b 96.5 0.0013 4.4E-08 55.6 3.1 23 83-105 2-24 (223)
460 3sr0_A Adenylate kinase; phosp 96.5 0.0013 4.6E-08 55.3 3.1 23 83-105 2-24 (206)
461 1uj2_A Uridine-cytidine kinase 96.5 0.0014 4.8E-08 56.4 3.3 25 81-105 22-46 (252)
462 1puj_A YLQF, conserved hypothe 96.5 0.0016 5.4E-08 57.5 3.6 26 80-105 119-144 (282)
463 2o5v_A DNA replication and rep 96.5 0.0011 3.7E-08 60.6 2.6 30 73-103 18-48 (359)
464 1e4v_A Adenylate kinase; trans 96.5 0.0013 4.4E-08 55.0 2.8 23 83-105 2-24 (214)
465 3bos_A Putative DNA replicatio 96.5 0.0021 7E-08 53.9 4.1 29 80-108 51-79 (242)
466 2ius_A DNA translocase FTSK; n 96.4 0.0026 8.7E-08 60.8 4.9 41 80-120 166-209 (512)
467 2grj_A Dephospho-COA kinase; T 96.4 0.0018 6E-08 53.9 3.3 26 80-105 11-36 (192)
468 3cnl_A YLQF, putative uncharac 96.4 0.0016 5.5E-08 56.8 3.1 25 82-106 100-124 (262)
469 4fcw_A Chaperone protein CLPB; 96.4 0.0028 9.7E-08 55.7 4.7 35 81-115 47-82 (311)
470 3def_A T7I23.11 protein; chlor 96.4 0.0017 5.9E-08 56.2 3.2 24 81-104 36-59 (262)
471 1h65_A Chloroplast outer envel 96.4 0.0017 5.9E-08 56.5 3.1 25 81-105 39-63 (270)
472 1a7j_A Phosphoribulokinase; tr 96.4 0.00097 3.3E-08 59.1 1.5 38 80-117 4-42 (290)
473 3ld9_A DTMP kinase, thymidylat 96.3 0.0017 5.7E-08 55.5 2.8 43 79-121 19-63 (223)
474 4hlc_A DTMP kinase, thymidylat 96.3 0.0044 1.5E-07 52.0 5.3 43 81-124 2-44 (205)
475 3tmk_A Thymidylate kinase; pho 96.3 0.0053 1.8E-07 52.0 5.7 29 79-107 3-31 (216)
476 1wxq_A GTP-binding protein; st 96.3 0.0019 6.4E-08 59.9 3.0 22 83-104 2-23 (397)
477 2f6r_A COA synthase, bifunctio 96.3 0.0025 8.4E-08 56.1 3.7 24 80-103 74-97 (281)
478 2orw_A Thymidine kinase; TMTK, 96.3 0.0037 1.3E-07 51.4 4.5 36 80-115 2-38 (184)
479 3cf0_A Transitional endoplasmi 96.2 0.0027 9.3E-08 56.2 3.7 27 80-106 48-74 (301)
480 1jbk_A CLPB protein; beta barr 96.2 0.0032 1.1E-07 50.4 3.6 27 80-106 42-68 (195)
481 2h92_A Cytidylate kinase; ross 96.1 0.0027 9.2E-08 53.0 3.1 25 81-105 3-27 (219)
482 2ocp_A DGK, deoxyguanosine kin 96.1 0.003 1E-07 53.8 3.4 27 80-106 1-27 (241)
483 1ltq_A Polynucleotide kinase; 96.1 0.003 1E-07 55.5 3.3 23 82-104 3-25 (301)
484 3b9p_A CG5977-PA, isoform A; A 96.1 0.0037 1.3E-07 54.7 3.9 26 80-105 53-78 (297)
485 2qby_A CDC6 homolog 1, cell di 96.1 0.0026 8.9E-08 57.2 2.9 29 79-107 43-71 (386)
486 3hjn_A DTMP kinase, thymidylat 96.1 0.0051 1.7E-07 51.2 4.4 43 83-125 2-44 (197)
487 1p5z_B DCK, deoxycytidine kina 96.0 0.0023 8E-08 55.3 2.1 28 79-106 22-49 (263)
488 3a8t_A Adenylate isopentenyltr 96.0 0.0042 1.4E-07 56.2 3.8 26 80-105 39-64 (339)
489 3zvl_A Bifunctional polynucleo 96.0 0.0044 1.5E-07 57.6 4.0 27 79-105 256-282 (416)
490 1l8q_A Chromosomal replication 96.0 0.0043 1.5E-07 55.2 3.7 27 81-107 37-63 (324)
491 1f5n_A Interferon-induced guan 95.9 0.0029 1E-07 61.5 2.7 27 79-105 36-62 (592)
492 1v5w_A DMC1, meiotic recombina 95.9 0.0071 2.4E-07 54.7 5.1 40 79-118 120-166 (343)
493 2qmh_A HPR kinase/phosphorylas 95.9 0.0039 1.3E-07 52.3 3.0 34 71-104 24-57 (205)
494 3d3q_A TRNA delta(2)-isopenten 95.9 0.0042 1.4E-07 56.3 3.3 25 82-106 8-32 (340)
495 2p65_A Hypothetical protein PF 95.9 0.0042 1.4E-07 49.7 3.1 27 80-106 42-68 (187)
496 2qpt_A EH domain-containing pr 95.9 0.0035 1.2E-07 60.5 3.0 24 81-104 65-88 (550)
497 2z43_A DNA repair and recombin 95.9 0.0063 2.1E-07 54.5 4.5 40 79-118 105-151 (324)
498 3llm_A ATP-dependent RNA helic 95.9 0.0049 1.7E-07 52.3 3.6 24 80-103 75-98 (235)
499 4ad8_A DNA repair protein RECN 95.9 0.0049 1.7E-07 58.8 3.9 22 83-104 62-83 (517)
500 3exa_A TRNA delta(2)-isopenten 95.9 0.0054 1.8E-07 55.0 3.8 25 81-105 3-27 (322)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=4.4e-29 Score=230.13 Aligned_cols=188 Identities=15% Similarity=0.066 Sum_probs=143.8
Q ss_pred CccccccCCCCCCCCC--CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---
Q 023354 53 PHSHEPIYSPGYFSRR--APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE--- 125 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~--- 125 (283)
+.+...+++..|.... ..++++++|..+ |++++|+||||||||||+|+|+|+++|+ |+|.+.+.++...+..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4566777777775432 357899999854 9999999999999999999999999998 99999999998776544
Q ss_pred HHHhccccCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354 126 FLMRNGALPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 126 ~~~~ig~v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~ 194 (283)
+++.+||+||++. +.+.++.... ....+....+.+.|+.+++....+..+.+ ||||+||++|||+|+ +|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P 182 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 182 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 3568999999863 2222221111 11223334567788888888888888888 999999999999999 48
Q ss_pred cEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 195 IIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 195 ~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.|+|+| ||+++|.. ++.+.++ .+||+|++++.|++++.|++.+++.
T Consensus 183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 888888 99997632 2223221 6799999999999999998887764
No 2
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=3.5e-28 Score=216.07 Aligned_cols=198 Identities=15% Similarity=0.118 Sum_probs=150.2
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.....++++.|. ...++++++|.. +|++++|+||||||||||+|+|+|+++|+ |+|.+.+.++......++++.++
T Consensus 11 ~l~~~~l~~~~~--~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQ--QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeC--CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 344455555553 345789999985 59999999999999999999999999998 99999999998877778888899
Q ss_pred ccCCchH--------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-------CCc
Q 023354 132 ALPEERI--------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYI 195 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-------~~~ 195 (283)
|++|++. +.+.++.... ...+....+.+.++.+++....+..+.+ ||||+||++|||+|+ +|.
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPY-GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPR 167 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTS-CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred EEecCCccCCCCCHHHHHHhhhhhc-CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 9999752 3333332222 1112233456678888877777877777 999999999999998 789
Q ss_pred EEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC
Q 023354 196 IYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGG 250 (283)
Q Consensus 196 l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~ 250 (283)
++|+| ||++.|.. ++.+.++ .+||+|++++.|++++.|++.+++........+..
T Consensus 168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~l~~~~~~ 247 (266)
T 4g1u_C 168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQA 247 (266)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCHHHHHHHCCS
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCcHHHHHHhCC
Confidence 99998 99997632 1112121 58999999999999999999888877666666666
Q ss_pred CeEE
Q 023354 251 PFIF 254 (283)
Q Consensus 251 ~i~~ 254 (283)
++..
T Consensus 248 ~~~~ 251 (266)
T 4g1u_C 248 DLGV 251 (266)
T ss_dssp CEEE
T ss_pred CcEE
Confidence 5543
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.95 E-value=2e-28 Score=218.53 Aligned_cols=186 Identities=16% Similarity=0.044 Sum_probs=139.0
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC--CHHHHHHhc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRN 130 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~--~~~~~~~~i 130 (283)
+...++++.|... ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ...++++.+
T Consensus 8 l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 8 LKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 4455666666432 34889999985 59999999999999999999999999998 9999999988422 234567789
Q ss_pred cccCCchH---------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354 131 GALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (283)
Q Consensus 131 g~v~q~~~---------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l 198 (283)
||+||++. +.+.++.... ....+....+.+.|+.+++....+..+.+ ||||+||++||++|+ +|.++|
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLl 166 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLI 166 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999762 1222221111 11223334566788888888888888887 999999999999999 588888
Q ss_pred Ee-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 199 ID-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 199 lD-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+| ||++.|.. ++.+.+ ..+||+|++++.|++++.|++.+++..
T Consensus 167 LDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 167 LDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred EECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 88 99997531 111222 167999999999999999998887664
No 4
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.95 E-value=8.1e-28 Score=217.52 Aligned_cols=186 Identities=15% Similarity=0.208 Sum_probs=136.1
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.++++.|+.. .+++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus 51 ~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~ 129 (306)
T 3nh6_A 51 KGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH 129 (306)
T ss_dssp SCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcc
Confidence 4668888999998743 458999999855 9999999999999999999999999998 999999999988888888999
Q ss_pred ccccCCchH-------HHHHhCCCCCCChHHHHHHHHHH--HHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-
Q 023354 130 NGALPEERI-------RAVETGGCPHAAIREDISINLGP--LEELS--NLFKADLLLCE-----SGGDNLAANFSRELA- 192 (283)
Q Consensus 130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~--l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~- 192 (283)
+|||||++. +.+.++. .... .+....+.+. +..+. ...+++..+.+ ||||+||++|||+|+
T Consensus 130 i~~v~Q~~~lf~~Tv~eNi~~~~-~~~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 130 IGVVPQDTVLFNDTIADNIRYGR-VTAG-NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTS-TTCC-HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred eEEEecCCccCcccHHHHHHhhc-ccCC-HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 999999864 2333332 2222 1112111111 11111 11133444433 999999999999998
Q ss_pred CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 193 DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 193 ~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|.|+|+| ||++.|...+ ...+ +..||+|++++.|++++.|+..+++.
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 68888888 9999763211 1111 25699999999999999999887765
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.94 E-value=1.9e-27 Score=219.04 Aligned_cols=181 Identities=20% Similarity=0.162 Sum_probs=135.9
Q ss_pred ccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhcccc
Q 023354 58 PIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGAL 133 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v 133 (283)
.+++..|. ...++++++|..+ |++++|+||||||||||||+|+|+++|+ |+|.+.+.++.. ......++.+|||
T Consensus 8 ~~ls~~y~--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~v 85 (359)
T 3fvq_A 8 GHLSKSFQ--NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYL 85 (359)
T ss_dssp EEEEEEET--TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEE
T ss_pred EeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEE
Confidence 34444442 2457899999855 9999999999999999999999999998 999999988732 1112234679999
Q ss_pred CCchH--------HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354 134 PEERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (283)
Q Consensus 134 ~q~~~--------~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p 201 (283)
||++. +.+.++..... ...+....+.+.|+.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |
T Consensus 86 fQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 86 VQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEP 165 (359)
T ss_dssp CTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred eCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99853 33444432221 2233334667788888888888888888 999999999999999 58888888 9
Q ss_pred CCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 202 SGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 202 t~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+++.|.. ++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 166 ts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 166 FSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 9997632 111222 26899999999999999999988765
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.94 E-value=1.9e-27 Score=218.98 Aligned_cols=184 Identities=17% Similarity=0.101 Sum_probs=137.8
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.+...+.+..|.. ...++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++....+. ++.+|
T Consensus 14 ~l~~~~l~~~y~g-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 90 (355)
T 1z47_A 14 TIEFVGVEKIYPG-GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVG 90 (355)
T ss_dssp EEEEEEEEECCTT-STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSSEE
T ss_pred eEEEEEEEEEEcC-CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChh--hCcEE
Confidence 4556667777732 245789999985 59999999999999999999999999998 9999999888654432 46799
Q ss_pred ccCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 132 ALPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
||||+.. +.+.++.... ....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+|
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 170 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD 170 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999752 2222221100 11122233566788888888888888887 999999999999998 58888888
Q ss_pred -CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 -VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 -pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|.. ++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 171 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 171 EPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp STTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99997632 111222 16799999999999999898888765
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.94 E-value=1.9e-27 Score=207.65 Aligned_cols=178 Identities=16% Similarity=0.060 Sum_probs=128.6
Q ss_pred cCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhc
Q 023354 59 IYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRN 130 (283)
Q Consensus 59 ~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~i 130 (283)
++++.|.... ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..++ ++.+
T Consensus 6 ~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i 85 (235)
T 3tif_A 6 NVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI 85 (235)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHE
T ss_pred EEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccE
Confidence 3444454332 24789999985 49999999999999999999999999998 999999999887765443 3469
Q ss_pred cccCCchH--------HHHHhCCC----CCCChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354 131 GALPEERI--------RAVETGGC----PHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 131 g~v~q~~~--------~~i~~~g~----~~~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~~ 195 (283)
||+||++. +.+.++.. ......+....+.+.++.++.... .+..+.+ ||||+||++|||+++ +|.
T Consensus 86 ~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 165 (235)
T 3tif_A 86 GFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPP 165 (235)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999863 22222210 011222333456677888776654 3777777 999999999999999 488
Q ss_pred EEEEe-CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChH
Q 023354 196 IYIID-VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADL 236 (283)
Q Consensus 196 l~llD-pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~ 236 (283)
++++| ||++.|.. ++.+.+ ..+||+|++++.|++...++..
T Consensus 166 llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 88888 99997632 111222 2689999999999998765543
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.94 E-value=3.9e-27 Score=208.91 Aligned_cols=183 Identities=13% Similarity=0.066 Sum_probs=134.6
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC--CCCHHHHHHhc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRN 130 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~--~~~~~~~~~~i 130 (283)
+...++++.|.. ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++. ......+++.+
T Consensus 25 l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 25 IDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred EEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 555666666632 35789999985 59999999999999999999999999998 99999998874 22334567789
Q ss_pred cccCCchH--------HHHHhCC--CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354 131 GALPEERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (283)
Q Consensus 131 g~v~q~~~--------~~i~~~g--~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l 198 (283)
||+||++. +.+.++. .......+....+.+.++.+++....+..+.+ ||||+||++||++++ +|.+++
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll 182 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML 182 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 99999752 2222211 11111122233556788888887777887777 999999999999999 488888
Q ss_pred Ee-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 199 ID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 199 lD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+| |+++.|... +.+.++ .+||++++++.|++.+.|++.+++
T Consensus 183 LDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 183 FDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 88 999976321 112221 579999999999999888876654
No 9
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.94 E-value=2.5e-27 Score=219.64 Aligned_cols=170 Identities=16% Similarity=0.098 Sum_probs=131.6
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (283)
..++++++|..+ |++++|+||||||||||||+|+|+++|+ |+|.+.+.++...++. .+.+|||||++.
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVA 93 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTSCHH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCCCHH
Confidence 357899999854 9999999999999999999999999998 9999999998766554 367999999853
Q ss_pred HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch------
Q 023354 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP------ 208 (283)
Q Consensus 139 ~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~------ 208 (283)
+.+.++.... ....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.|+|+| |++++|..
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~ 173 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 2222221111 11122234566788888888888888888 999999999999998 68888888 99997632
Q ss_pred -------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 209 -------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 209 -------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 174 ~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 121222 26899999999999999999988765
No 10
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=7.6e-27 Score=208.77 Aligned_cols=195 Identities=13% Similarity=0.011 Sum_probs=141.0
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC--CCCHHHHHHhc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRN 130 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~--~~~~~~~~~~i 130 (283)
+...++++.|.. ..++++++|.. +|++++|+||||||||||+|+|+|+++|+ |+|.+.+.++. .....++++.+
T Consensus 22 l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 22 IQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred EEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 555666666643 35789999985 59999999999999999999999999998 99999998876 55556677789
Q ss_pred cccCCchH----------HHHHhCCCCC-----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354 131 GALPEERI----------RAVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 131 g~v~q~~~----------~~i~~~g~~~-----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~ 193 (283)
||++|++. +.+.++.... ....+....+.+.++.+++....+..+.+ |+||+||++|||+++ +
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~ 179 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ 179 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence 99999752 1222322110 01122233556778888887777888877 999999999999998 5
Q ss_pred CcEEEEe-CCCCCCch-------------hhcCCc--c----------cccCEEEEEcCCcccccCChHHHHhHHHHhhc
Q 023354 194 YIIYIID-VSGGDKIP-------------RKGGPG--I----------TQADLLVINKTDLASAIGADLAVMERDALRMR 247 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~-------------~~~~~~--i----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~ 247 (283)
|.++|+| ||++.|.. ++.... + .+||++++++.|++.+.|++.+++........
T Consensus 180 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 259 (279)
T 2ihy_A 180 PQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRF 259 (279)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCSHHHHHHH
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhccHHHHHH
Confidence 8888888 99997531 111122 2 57999999999999988887777655434333
Q ss_pred CCCC
Q 023354 248 DGGP 251 (283)
Q Consensus 248 ~~~~ 251 (283)
+..+
T Consensus 260 ~~~~ 263 (279)
T 2ihy_A 260 FQKN 263 (279)
T ss_dssp HTSC
T ss_pred hCCc
Confidence 4433
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=3.9e-27 Score=208.21 Aligned_cols=187 Identities=15% Similarity=0.057 Sum_probs=134.9
Q ss_pred CCCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354 50 GLAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL 127 (283)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~ 127 (283)
..-+.+...++++.|. ...++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....++
T Consensus 11 ~~~~~l~i~~l~~~y~--~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~ 87 (256)
T 1vpl_A 11 HHMGAVVVKDLRKRIG--KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR 87 (256)
T ss_dssp ---CCEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHH
T ss_pred ccCCeEEEEEEEEEEC--CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHh
Confidence 3345567777777774 245789999985 59999999999999999999999999998 999999988754 345567
Q ss_pred HhccccCCchH--------HHHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354 128 MRNGALPEERI--------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII 196 (283)
Q Consensus 128 ~~ig~v~q~~~--------~~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l 196 (283)
+.+||+||++. +.+.++.. ......+....+.+.++.+++....+..+.+ |+||+||++||++++ +|.|
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 78999999752 22222110 0011111123455678888777777777777 999999999999999 4888
Q ss_pred EEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 197 YIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 197 ~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+++| |+++.|... +.+.++ .+||++++++.|++.+.|++.+++
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 8888 999976321 112221 579999999999999877766553
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=6.2e-27 Score=205.01 Aligned_cols=184 Identities=17% Similarity=0.096 Sum_probs=132.4
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH-Hhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~-~~ig 131 (283)
+...++++.|.. ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......+++ +.+|
T Consensus 7 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 7 LEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred EEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 344455555533 35789999985 59999999999999999999999999998 9999999888765555443 4599
Q ss_pred ccCCchH--------HHHHhCCCCCCChHHHHHHHHHHHHHcc-ccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 132 ALPEERI--------RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~-~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
|+||++. +.+.++........+....+.+.++.+. .....+..+.+ |+||+||++||++++ +|.++++|
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 164 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD 164 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 9999752 3333432111111122233445667773 66666777777 999999999999999 48888888
Q ss_pred -CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 -VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 -pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|... +.+.+ ..+||++++++.|++.+.|++.+++.
T Consensus 165 EPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999976321 11222 16799999999999988887766654
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.94 E-value=1.3e-26 Score=204.99 Aligned_cols=181 Identities=18% Similarity=0.086 Sum_probs=133.8
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhcc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNG 131 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig 131 (283)
+...++++.|.. ..++++++|.. +|++++|+||||||||||+|+|+|+++|+ |+|.+.+.++...... ..++.+|
T Consensus 8 l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 8 LRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 444555555532 35789999985 59999999999999999999999999998 9999999888655443 3456799
Q ss_pred ccCCchH--------HHHHhCCCC-C-------------CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHH
Q 023354 132 ALPEERI--------RAVETGGCP-H-------------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFS 188 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~-~-------------~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia 188 (283)
|+||++. +.+.++... . ....+....+.+.++.+++....+..+.+ |+||+||++||
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA 165 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 165 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence 9999853 233333221 1 11122233556788888887777888877 99999999999
Q ss_pred HHhc-CCcEEEEe-CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHH
Q 023354 189 RELA-DYIIYIID-VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLA 237 (283)
Q Consensus 189 ~al~-~~~l~llD-pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e 237 (283)
++++ +|.++++| |+++.|... +.+.+ ..+||++++++.|++.+.|++.+
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9998 58888888 999976321 11222 26899999999999998887766
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=2.9e-26 Score=204.25 Aligned_cols=187 Identities=15% Similarity=0.137 Sum_probs=134.6
Q ss_pred CccccccCCCCCCCC-CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 53 PHSHEPIYSPGYFSR-RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
+.+...++++.|... ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 457777888887642 346899999985 59999999999999999999999999998 999999988866556667788
Q ss_pred ccccCCchH-------HHHHhCCCCCCChHHHHH------HHHHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-
Q 023354 130 NGALPEERI-------RAVETGGCPHAAIREDIS------INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA- 192 (283)
Q Consensus 130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~------~~~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~- 192 (283)
+||+||++. +.+.++. ......+... .+.+.++.+ +.....+..+.+ |+||+||++|||+|+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTC-SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccccccHHHHHhhhc-ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 999999853 2333332 1111101111 122345554 344445666666 999999999999999
Q ss_pred CCcEEEEe-CCCCCCchh-------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 193 DYIIYIID-VSGGDKIPR-------------KGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 193 ~~~l~llD-pt~g~~l~~-------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|.|+|+| |+++.|... +.+.+ +..||+|++++.|++.+.|++.+++.
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 48888888 999975321 11222 25699999999999998888776654
No 15
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=1.1e-26 Score=245.25 Aligned_cols=191 Identities=15% Similarity=0.136 Sum_probs=148.5
Q ss_pred CCCCccccccCCCCCCCCCC-CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH
Q 023354 50 GLAPHSHEPIYSPGYFSRRA-PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF 126 (283)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~ 126 (283)
...|.+.+.+++|.|+++.. ++|++++|..+ |++|||+||+|||||||+++|+|++.|+ |+|.+++.|+.+.+...+
T Consensus 1072 ~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1072 KLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHH
T ss_pred CCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHH
Confidence 34578999999999997754 68999999965 9999999999999999999999999997 999999999999999999
Q ss_pred HHhccccCCchH------H-HHHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHH
Q 023354 127 LMRNGALPEERI------R-AVETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRE 190 (283)
Q Consensus 127 ~~~ig~v~q~~~------~-~i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~a 190 (283)
|+++++|||++. + .+.+|..+.....+++..+.+ .+.++ .+..++|..++| ||||+||++||||
T Consensus 1152 R~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp HTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred HhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 999999999985 2 233333332222222222211 12222 124578998987 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh----------c-----------CCcccccCEEEEEcCCcccccCChHHHHh
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK----------G-----------GPGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~----------~-----------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++ +|.|+++| ||+..|...+ . ..++..||+|++++.|++++.|++.+++.
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 98 58888887 9988653211 0 12357899999999999999999988775
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.93 E-value=3.1e-26 Score=211.24 Aligned_cols=169 Identities=15% Similarity=0.076 Sum_probs=130.6
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~ 139 (283)
.++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++...++. ++.+|||||+.. +
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e 94 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFE 94 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCCCCTTSCHHH
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHH
Confidence 4788999985 59999999999999999999999999998 9999999888665443 467999999752 3
Q ss_pred HHHhCCCCCCChH-HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------
Q 023354 140 AVETGGCPHAAIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP------- 208 (283)
Q Consensus 140 ~i~~~g~~~~~~~-~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~------- 208 (283)
.+.++........ +....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |+++.|..
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 174 (359)
T 2yyz_A 95 NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRA 174 (359)
T ss_dssp HHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 3334322111111 1223566788888888888888887 999999999999999 58888888 99997632
Q ss_pred ------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 209 ------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 209 ------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 175 EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 111222 16799999999999999999888775
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.93 E-value=4.7e-26 Score=210.94 Aligned_cols=182 Identities=12% Similarity=-0.004 Sum_probs=135.0
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...+++..|. ...++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++....+. ++.+||
T Consensus 12 l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 87 (372)
T 1v43_A 12 VKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87 (372)
T ss_dssp EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred EEEEEEEEEEC--CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEE
Confidence 34445555553 235788999985 59999999999999999999999999998 9999999888655443 467999
Q ss_pred cCCchH--------HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 133 LPEERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 133 v~q~~~--------~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
|||+.. +.+.++..... ...+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+|
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999853 22333322111 1122234567788888888888888888 999999999999998 58888888
Q ss_pred CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 201 VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 201 pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|+++.|.. ++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99997632 121222 26799999999999999999888765
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.93 E-value=1.5e-26 Score=205.19 Aligned_cols=183 Identities=12% Similarity=0.074 Sum_probs=131.9
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC----------CC
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----------KE 122 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~----------~~ 122 (283)
+...++++.|. ...++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ..
T Consensus 7 l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 7 LHVIDLHKRYG--GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred EEEeeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 44455555553 235789999985 59999999999999999999999999998 999999888751 22
Q ss_pred H---HHHHHhccccCCchH--------HHHHhCC--CCCCChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHH
Q 023354 123 D---GEFLMRNGALPEERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANF 187 (283)
Q Consensus 123 ~---~~~~~~ig~v~q~~~--------~~i~~~g--~~~~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~i 187 (283)
. ..+++.+||+||++. +.+.++. .......+....+.+.++.+++... .+..+.+ ||||+||++|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 2 245678999999752 2222211 1111112222355677888877766 6777777 9999999999
Q ss_pred HHHhc-CCcEEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 188 SRELA-DYIIYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 188 a~al~-~~~l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
|++++ +|.|+|+| |+++.|... +.+.++ .+||++++++.|++.+.|++.+++
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 165 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99998 58888888 999976321 112221 579999999999999888776654
No 19
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.93 E-value=1.3e-26 Score=203.89 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=128.4
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+.+.++++.|+.....++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~ 87 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence 5666777777433346789999985 59999999999999999999999999998 999999998877666677788999
Q ss_pred cCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccccc-----------cCCCcccC-CchHHHHHHHHHHhc-
Q 023354 133 LPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA- 192 (283)
Q Consensus 133 v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-----------~~d~~i~e-SgGq~q~~~ia~al~- 192 (283)
+||++. +.+.++ ..... .+ .+.+.++.+.... ..+..+.+ ||||+||++|||+++
T Consensus 88 v~Q~~~l~~~tv~enl~~~-~~~~~-~~---~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 88 VLQDNVLLNRSIIDNISLA-NPGMS-VE---KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp ECSSCCCTTSBHHHHHTTT-CTTCC-HH---HHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EeCCCccccccHHHHHhcc-CCCCC-HH---HHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 999863 222232 11111 11 1223333332221 22233344 999999999999999
Q ss_pred CCcEEEEe-CCCCCCchh-----------hcCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354 193 DYIIYIID-VSGGDKIPR-----------KGGPG----------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 193 ~~~l~llD-pt~g~~l~~-----------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+|.++++| |+++.|... ..+.+ +..||++++++.|++.+.|++.+++
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 48888888 999976321 11111 2569999999999999888776654
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.93 E-value=1.3e-26 Score=213.00 Aligned_cols=166 Identities=16% Similarity=0.096 Sum_probs=126.9
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HH
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~ 140 (283)
++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++....+ .++.+|||||+.. +.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCHHHH
Confidence 789999985 59999999999999999999999999998 999999988865443 3578999999752 12
Q ss_pred HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch---------
Q 023354 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP--------- 208 (283)
Q Consensus 141 i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~--------- 208 (283)
+.++........ . ..+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |+++.|..
T Consensus 93 l~~~~~~~~~~~-~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l 170 (348)
T 3d31_A 93 LEFGMRMKKIKD-P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170 (348)
T ss_dssp HHHHHHHHCCCC-H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCH-H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 222110000000 1 3456678888887778888877 999999999999999 58888888 99997632
Q ss_pred ----hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 209 ----RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 209 ----~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 171 ~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 121222 26799999999999999899888765
No 21
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.93 E-value=9.8e-27 Score=214.79 Aligned_cols=179 Identities=13% Similarity=0.063 Sum_probs=133.3
Q ss_pred ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
.+.+..|. ...++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++....+. ++.+|||||
T Consensus 7 ~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q 82 (362)
T 2it1_A 7 ENIVKKFG--NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQ 82 (362)
T ss_dssp EEEEEESS--SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECT
T ss_pred EeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEec
Confidence 34444452 235789999985 59999999999999999999999999998 9999999888665443 367999999
Q ss_pred chH--------HHHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354 136 ERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (283)
Q Consensus 136 ~~~--------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~ 203 (283)
+.. +.+.++... .....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |++
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 752 222222100 011122223566788888888778888887 999999999999998 58888888 999
Q ss_pred CCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 204 GDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 204 g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.|.. ++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 87532 111222 26799999999999999999888765
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.93 E-value=3e-26 Score=203.57 Aligned_cols=169 Identities=14% Similarity=0.070 Sum_probs=125.3
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (283)
..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ..+++.+||++|++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---YEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---HHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---HHhhhhEEEEeccchhhcCCCcH
Confidence 35788999985 59999999999999999999999999998 999998887643 256678999999851
Q ss_pred -HHHHhCCCCCCChHHHHHHHHHHHHHcccc--ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---
Q 023354 139 -RAVETGGCPHAAIREDISINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR--- 209 (283)
Q Consensus 139 -~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~--~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~--- 209 (283)
+.+.++........+....+.+.++.+++. ...+..+.+ |+||+||++||++++ +|.++++| |+++.|...
T Consensus 97 ~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 176 (266)
T 2yz2_A 97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176 (266)
T ss_dssp HHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHH
Confidence 233333211111111123455678888777 667777777 999999999999999 58888888 999976321
Q ss_pred ---------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 210 ---------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 210 ---------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.+.+ ..+||++++++.|++.+.|++.+++.
T Consensus 177 l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 11222 15799999999999998887766653
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.93 E-value=2.4e-26 Score=199.24 Aligned_cols=176 Identities=16% Similarity=0.068 Sum_probs=126.5
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HH-Hhc
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRN 130 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~-~~i 130 (283)
..+.++.|.. ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..+ ++ +.+
T Consensus 7 ~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 7 AENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 3444555532 35788999985 59999999999999999999999999998 99999998886655432 33 679
Q ss_pred cccCCchH--------HHHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 131 GALPEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 131 g~v~q~~~--------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
||+||++. +.+.++... .....+....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFA 164 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999752 122221100 011112223456778888877777777777 999999999999999 4888888
Q ss_pred e-CCCCCCchh------------hcCCc----------ccccCEEEEEcCCcccccCC
Q 023354 200 D-VSGGDKIPR------------KGGPG----------ITQADLLVINKTDLASAIGA 234 (283)
Q Consensus 200 D-pt~g~~l~~------------~~~~~----------i~~ad~ivi~K~g~i~~~g~ 234 (283)
| |+++.|... +.+.+ +.+||++++++.|++.+.|+
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 8 999976321 11222 26799999999999887653
No 24
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.93 E-value=4.7e-26 Score=209.83 Aligned_cols=168 Identities=15% Similarity=0.063 Sum_probs=129.1
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC-----CCHHHHHHhccccCCchH-----
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-----KEDGEFLMRNGALPEERI----- 138 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~-----~~~~~~~~~ig~v~q~~~----- 138 (283)
++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++.. ..+ .++.+|||||+..
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~--~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP--EDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG--GGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh--hhCCEEEEeCCCccCCCC
Confidence 788999985 49999999999999999999999999998 999998887643 222 3467999999752
Q ss_pred ---HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch---
Q 023354 139 ---RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP--- 208 (283)
Q Consensus 139 ---~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~--- 208 (283)
+.+.++..... ...+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |+++.|..
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~ 177 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 33444322111 1122234567788888888888888887 999999999999998 58888888 99997632
Q ss_pred ----------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 209 ----------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 209 ----------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 178 ~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 111222 16799999999999999899888765
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.93 E-value=1.2e-25 Score=197.83 Aligned_cols=167 Identities=13% Similarity=0.086 Sum_probs=128.6
Q ss_pred CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchH--------HH
Q 023354 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (283)
Q Consensus 70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~ 140 (283)
..+++++|.. +|++++|+||||||||||+++|+|+++|+|+|.+.+.++......++++.+||++|++. +.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 4788899984 59999999999999999999999999877999999888766666677788999999753 22
Q ss_pred HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc-------EEEEe-CCCCCCchh-
Q 023354 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI-------IYIID-VSGGDKIPR- 209 (283)
Q Consensus 141 i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~-------l~llD-pt~g~~l~~- 209 (283)
+.++...... ...+.+.++.+++....+..+.+ |+||+||++||++++ +|. ++++| |+++.|...
T Consensus 94 l~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~ 169 (249)
T 2qi9_C 94 LTLHQHDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 169 (249)
T ss_dssp HHTTCSSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHH
T ss_pred HHHhhccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHH
Confidence 3333221111 23455678888877777777777 999999999999998 477 88888 999976321
Q ss_pred -----------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354 210 -----------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 210 -----------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+.+.++ .+||++++++.|++.+.|++.+++.
T Consensus 170 ~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 170 SALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 112221 6799999999999998888777665
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.93 E-value=9.7e-26 Score=197.73 Aligned_cols=179 Identities=14% Similarity=0.117 Sum_probs=125.2
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (283)
..++++.|. .....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+++.+||+|
T Consensus 4 ~~~l~~~y~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 82 (243)
T 1mv5_A 4 ARHVDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS 82 (243)
T ss_dssp EEEEEECSS-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred EEEEEEEeC-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence 344555663 2346889999985 59999999999999999999999999998 99999998886554444567899999
Q ss_pred CchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCC-----------cccC-CchHHHHHHHHHHhc-CC
Q 023354 135 EERI-------RAVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCE-SGGDNLAANFSRELA-DY 194 (283)
Q Consensus 135 q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~-----------~i~e-SgGq~q~~~ia~al~-~~ 194 (283)
|++. +.+.++..... ..+ .+.+.++.+......+. .+.+ |+||+||++|||+++ +|
T Consensus 83 q~~~l~~~tv~enl~~~~~~~~-~~~---~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 83 QDSAIMAGTIRENLTYGLEGDY-TDE---DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp CSSCCCCEEHHHHTTSCTTSCS-CHH---HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCccccccHHHHHhhhccCCC-CHH---HHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 9863 12222211111 111 23344555444333222 2334 999999999999998 58
Q ss_pred cEEEEe-CCCCCCchh-----------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 195 IIYIID-VSGGDKIPR-----------KGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 195 ~l~llD-pt~g~~l~~-----------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.++++| |+++.|... ..+.+ +..||++++++.|++.+.|++.+++.
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 888888 999865321 01222 25699999999999998888877654
No 27
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=7e-26 Score=221.82 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=140.2
Q ss_pred CCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354 51 LAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM 128 (283)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~ 128 (283)
..+.+.+.++++.|+....+++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++
T Consensus 338 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 338 VEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred CCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh
Confidence 346788999999998777789999999855 9999999999999999999999999998 99999999998888888899
Q ss_pred hccccCCchH-------HHHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354 129 RNGALPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA 192 (283)
Q Consensus 129 ~ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~ 192 (283)
+++||||++. +.+.+ +.+.... +......+ .+.++. ...+++..+.+ ||||+||+++||+++
T Consensus 418 ~i~~v~Q~~~lf~~tv~eni~~-~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 418 HISAVPQETVLFSGTIKENLKW-GREDATD-DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp HEEEECSSCCCCSEEHHHHHTT-TCSSCCH-HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred heEEECCCCcCcCccHHHHHhc-cCCCCCH-HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999874 22323 2222222 11111111 111110 11244444443 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 193 -DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+|.++++| ||++.|...+ .+.+ +..||+|++++.|++++.|+..+++..
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 58887777 9998763211 1111 368999999999999999999887653
No 28
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.92 E-value=5.9e-26 Score=210.48 Aligned_cols=170 Identities=12% Similarity=0.048 Sum_probs=128.0
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC------CCHHHHHHhccccCCchH--
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERI-- 138 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~------~~~~~~~~~ig~v~q~~~-- 138 (283)
..++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++.. ..+. ++.+|||||+..
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--~r~ig~v~Q~~~l~ 93 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--DRDIAMVFQSYALY 93 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--GSSEEEECSCCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh--HCCEEEEeCCCccC
Confidence 34788999985 59999999999999999999999999998 999999887654 3332 467999999752
Q ss_pred ------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354 139 ------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (283)
Q Consensus 139 ------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~ 208 (283)
+.+.++.... ....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |+++.|..
T Consensus 94 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 173 (372)
T 1g29_1 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173 (372)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 2222221100 11112223556788888888878888887 999999999999998 58888888 99997632
Q ss_pred -------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 209 -------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 209 -------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++.+.+ ..+||+|++++.|++.+.|++.+++.
T Consensus 174 ~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 111222 16799999999999999999888765
No 29
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.92 E-value=2.3e-25 Score=195.09 Aligned_cols=165 Identities=18% Similarity=0.124 Sum_probs=122.9
Q ss_pred Cccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HH
Q 023354 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (283)
Q Consensus 71 ~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~ 140 (283)
.+++++|. .+ ++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... .++.+||+||++. +.
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP--ERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT--TTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCch--hhCcEEEEcCCCccCCCCcHHHH
Confidence 38888887 56 999999999999999999999999998 999999988754322 2467999999752 23
Q ss_pred HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCch---------
Q 023354 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIP--------- 208 (283)
Q Consensus 141 i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~--------- 208 (283)
+.++... .........+.+.++.+++....+..+.+ ||||+||++||++++. |.++++| |+++.|..
T Consensus 91 l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l 169 (240)
T 2onk_A 91 IAYGLRN-VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169 (240)
T ss_dssp HHTTCTT-SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 3333211 11122233556788888877777777777 9999999999999994 7777777 99997632
Q ss_pred ----hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354 209 ----RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 209 ----~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
++.+.++ .+||++++++.|++.+.|++.+++
T Consensus 170 ~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 170 RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 1112221 679999999999999888876654
No 30
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.2e-26 Score=212.50 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=136.4
Q ss_pred CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhcc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
+.+...++++.|......++++++|..+ |++++|+|||||||||||++|+|+++.+|+|.+.+.++...+..++++.+|
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig 97 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFG 97 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEE
Confidence 4567778888887666678999999855 999999999999999999999999984499999999998888878888999
Q ss_pred ccCCchHH-------HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCccc------------CCchHHHHHHHHHHhc
Q 023354 132 ALPEERIR-------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLC------------ESGGDNLAANFSRELA 192 (283)
Q Consensus 132 ~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~------------eSgGq~q~~~ia~al~ 192 (283)
||||++.. .+...+ .... ..+.+.++.+.+....++.+. -||||+||++|||+|+
T Consensus 98 ~v~Q~~~lf~~tv~enl~~~~---~~~~---~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 98 VIPQKVFIFSGTFRKNLDPNA---AHSD---QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp EESCCCCCCSEEHHHHHCTTC---CSCH---HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred EEcCCcccCccCHHHHhhhcc---ccCH---HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 99998631 111111 1111 233455666555443333332 2999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 193 -DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|.|+|+| |+++.|...+ .+.+ +..||+|++++.|++.+.|++.+++.
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 58888888 9888653210 0111 36799999999999999999988875
No 31
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.92 E-value=1.4e-25 Score=219.30 Aligned_cols=184 Identities=20% Similarity=0.201 Sum_probs=139.3
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.++++.|+....+.+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 45688889999998777789999999854 9999999999999999999999999998 999999999988888888999
Q ss_pred ccccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccc-------cccCCCcccC-----CchHHHHHHHHHH
Q 023354 130 NGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSRE 190 (283)
Q Consensus 130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~-------~~~~d~~i~e-----SgGq~q~~~ia~a 190 (283)
+||+||++. +.+.++ .+.... +. +.+.++.... ..+++..+.+ ||||+||+++||+
T Consensus 417 i~~v~Q~~~l~~~tv~eni~~~-~~~~~~-~~---~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra 491 (578)
T 4a82_A 417 IGLVQQDNILFSDTVKENILLG-RPTATD-EE---VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491 (578)
T ss_dssp EEEECSSCCCCSSBHHHHHGGG-CSSCCH-HH---HHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred eEEEeCCCccCcccHHHHHhcC-CCCCCH-HH---HHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 999999863 223333 222221 11 2222222211 2244444443 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++ +|.++++| ||++.|...+ .+. .+..||+|++++.|++.+.|++.+++.
T Consensus 492 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 98 68888877 9998763211 011 136799999999999999999887764
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.92 E-value=3.2e-25 Score=196.37 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=128.6
Q ss_pred CccccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+.+...++++.|.... ..++++++|.. +|++++|+||||||||||+++|+|++++.|+|.+.+.++.......+++.+
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence 3466677777776442 46889999985 599999999999999999999999998779999999888665566677889
Q ss_pred cccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHcccc-------ccC----CCcccC-CchHHHHHHHHHHh
Q 023354 131 GALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL-------FKA----DLLLCE-SGGDNLAANFSREL 191 (283)
Q Consensus 131 g~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-------~~~----d~~i~e-SgGq~q~~~ia~al 191 (283)
+|+||++. +.+.++. .... .+. +.+.++.+... ..+ +..+.+ |+||+||++|||++
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~-~~~~-~~~---~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL 170 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGK-LDAT-DEE---VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL 170 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTC-TTCC-HHH---HHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred EEEcCCCcccccCHHHHHhccC-CCCC-HHH---HHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 99999863 2333332 1111 111 22233322211 111 223334 99999999999999
Q ss_pred c-CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 192 A-DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+ +|.|+++| |+++.|.... .+.+ +..||++++++.|++.+.|++.+++.
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8 68888888 9999763210 1111 25699999999999998888766653
No 33
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.92 E-value=5.5e-25 Score=232.34 Aligned_cols=189 Identities=17% Similarity=0.166 Sum_probs=147.0
Q ss_pred CCCccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354 51 LAPHSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL 127 (283)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~ 127 (283)
..|.+.+.+++|.|+... .+.+++++|..+ |++++|+||+|||||||+++|+|++.|+ |+|.+++.++...+...++
T Consensus 412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 356799999999999765 578999999855 9999999999999999999999999998 9999999999999999999
Q ss_pred HhccccCCchH------HHHHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354 128 MRNGALPEERI------RAVETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA 192 (283)
Q Consensus 128 ~~ig~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~ 192 (283)
++++||+|++. ..+...|.+..+. +.+..+.+ .+.++ .+.++++..++| |||||||++||||+.
T Consensus 492 ~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~-~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNCTIEENISLGKEGITR-EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHEEEECSSCCCCSEEHHHHHHTTCTTCCH-HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hcccccCCcceeeCCchhHHHhhhcccchH-HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 99999999985 2333334444332 22221111 11111 134678888888 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchhh-----------c----------CCcccccCEEEEEcCCcccccCChHHHHh
Q 023354 193 -DYIIYIID-VSGGDKIPRK-----------G----------GPGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~-----------~----------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|.|+++| ||+..|...+ . ..+++.||+|++++.|++++.|+..+++.
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 57777766 9998663211 0 12358999999999999999999888764
No 34
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.91 E-value=8.3e-25 Score=214.03 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=137.4
Q ss_pred CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.++++.|+.+..+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 4568888999998754457899999985 59999999999999999999999999998 999999999987777788889
Q ss_pred ccccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHcccc-------ccCCCcccC-----CchHHHHHHHHHH
Q 023354 130 NGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCE-----SGGDNLAANFSRE 190 (283)
Q Consensus 130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-------~~~d~~i~e-----SgGq~q~~~ia~a 190 (283)
++|+||++. +.+.++..+... .+. +.+.++.++.. .+++..+.+ ||||+||+++||+
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~-~~~---~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra 494 (582)
T 3b60_A 419 VALVSQNVHLFNDTVANNIAYARTEEYS-REQ---IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCC-HHH---HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred CeEEccCCcCCCCCHHHHHhccCCCCCC-HHH---HHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 999999863 333343212222 222 22333333221 234444443 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++ +|.++++| ||++.|...+ .+. .+..||+|++++.|++.+.|++.+.+.
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 98 68888887 9998763211 111 136799999999999999898877654
No 35
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.91 E-value=8.9e-25 Score=213.81 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=136.4
Q ss_pred CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.++++.|+....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 3568888999999754456899999985 49999999999999999999999999998 999999999887777778889
Q ss_pred ccccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHcccc-------ccCCCcccC-----CchHHHHHHHHHH
Q 023354 130 NGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCE-----SGGDNLAANFSRE 190 (283)
Q Consensus 130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-------~~~d~~i~e-----SgGq~q~~~ia~a 190 (283)
+||+||++. +.+.++..+... .+ .+.+.++.++.. ++++..+.+ ||||+||+++||+
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~-~~---~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 419 FALVSQNVHLFNDTIANNIAYAAEGEYT-RE---QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred eEEEcCCCccccccHHHHHhccCCCCCC-HH---HHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 999999874 222232212211 22 222333333221 234444443 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++ +|.++++| ||++.|...+ .+.+ +..||+|++++.|++.+.|+..+++.
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 98 58777777 9998653211 1111 26799999999999999898876653
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.91 E-value=4.1e-25 Score=194.88 Aligned_cols=181 Identities=16% Similarity=0.160 Sum_probs=127.3
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (283)
..++++.|.. ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|. +++.+||+|
T Consensus 7 i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~ 72 (253)
T 2nq2_C 7 VENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVP 72 (253)
T ss_dssp EEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEEC
T ss_pred EeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEc
Confidence 3444555531 245789999985 59999999999999999999999999998 9887 124689999
Q ss_pred CchH--------HHHHhCCCCC-----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354 135 EERI--------RAVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (283)
Q Consensus 135 q~~~--------~~i~~~g~~~-----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll 199 (283)
|++. +.+.++.... .........+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++
T Consensus 73 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 152 (253)
T 2nq2_C 73 QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILL 152 (253)
T ss_dssp SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8752 2333332111 01122234556778888877777777777 999999999999998 5888888
Q ss_pred e-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCe
Q 023354 200 D-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPF 252 (283)
Q Consensus 200 D-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i 252 (283)
| |+++.|... +.+.++ .+||++++++.|+ .+.|++.+++........++.++
T Consensus 153 DEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~~~~~~~~~~~~ 229 (253)
T 2nq2_C 153 DEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTSENLTALFHLPM 229 (253)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCHHHHHHHHTSCE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCcHHHHHHhCCCc
Confidence 8 999976321 112221 6799999999999 87787777665433333344444
No 37
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=7.5e-25 Score=214.95 Aligned_cols=183 Identities=18% Similarity=0.230 Sum_probs=136.3
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354 52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR 129 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ 129 (283)
.+.+.+.++++.|.. ..+++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus 352 ~~~i~~~~v~~~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDK-KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CCCEEEEEEECCSSS-SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CCeEEEEEEEEECCC-CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 466888999999864 3468999999865 9999999999999999999999999998 999999999988888889999
Q ss_pred ccccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccc-------cccCCCcccC-----CchHHHHHHHHHH
Q 023354 130 NGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSRE 190 (283)
Q Consensus 130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~-------~~~~d~~i~e-----SgGq~q~~~ia~a 190 (283)
++|+||++. +.+.++ .+..... .. .+.++.... ..+++..+.+ ||||+||++|||+
T Consensus 431 i~~v~Q~~~lf~~tv~eni~~~-~~~~~~~-~~---~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra 505 (598)
T 3qf4_B 431 IGIVLQDTILFSTTVKENLKYG-NPGATDE-EI---KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505 (598)
T ss_dssp EEEECTTCCCCSSBHHHHHHSS-STTCCTT-HH---HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred eEEEeCCCccccccHHHHHhcC-CCCCCHH-HH---HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 999999874 223332 2222111 11 122222111 1234444433 9999999999999
Q ss_pred hc-CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
++ +|.++++| ||++.|...+ .+.+ +..||+|++++.|++.+.|++.+.+.
T Consensus 506 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 98 58888888 9998763211 1111 36799999999999999999887654
No 38
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.91 E-value=2.2e-24 Score=191.73 Aligned_cols=184 Identities=13% Similarity=0.004 Sum_probs=129.4
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhc--ccCC-CcEEEEeecCCCCCHHHH-HH
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEF-LM 128 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~--~~~~-g~i~i~~~d~~~~~~~~~-~~ 128 (283)
.+...++++.|. ...++++++|.. +|++++|+||||||||||+|+|+|+ ++|+ |+|.+.+.++.......+ ++
T Consensus 20 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 355666776663 245789999985 5999999999999999999999998 4576 999999988765555444 34
Q ss_pred hccccCCchH--------HHHHhC--------CCCCCChHHHHHHHHHHHHHcccc-ccCCCccc-C-CchHHHHHHHHH
Q 023354 129 RNGALPEERI--------RAVETG--------GCPHAAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSR 189 (283)
Q Consensus 129 ~ig~v~q~~~--------~~i~~~--------g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~-e-SgGq~q~~~ia~ 189 (283)
.++|++|++. +++.+. +.......+....+.+.++.+++. ...+..+. + |+||+||++||+
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 5899999862 112111 111111112223456678888775 35566664 3 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchh------------hcCCc----------c-cc-cCEEEEEcCCcccccCChHHHH
Q 023354 190 ELA-DYIIYIID-VSGGDKIPR------------KGGPG----------I-TQ-ADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~------------~~~~~----------i-~~-ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
+|+ +|.|+++| |+++.|... +.+.+ + .. ||++++++.|++.+.|++.++.
T Consensus 178 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 998 68888888 999976321 11111 1 33 8999999999999888776543
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.90 E-value=4.4e-24 Score=186.53 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=113.8
Q ss_pred ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354 56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (283)
...++++.|.....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+ .+||+
T Consensus 5 ~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v 71 (237)
T 2cbz_A 5 TVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYV 71 (237)
T ss_dssp EEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEE
T ss_pred EEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEE
Confidence 344555566433456899999985 59999999999999999999999999987 9998866 37888
Q ss_pred CCchH-------HHHHhCCCCCCChHHHHHHHHHH---HHHcccc-----ccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354 134 PEERI-------RAVETGGCPHAAIREDISINLGP---LEELSNL-----FKADLLLCE-SGGDNLAANFSRELA-DYII 196 (283)
Q Consensus 134 ~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~---l~~l~~~-----~~~d~~i~e-SgGq~q~~~ia~al~-~~~l 196 (283)
||++. +.+.++..... +....+.+. ++.+... ...+..+.+ |+||+||++|||+++ +|.+
T Consensus 72 ~Q~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 148 (237)
T 2cbz_A 72 PQQAWIQNDSLRENILFGCQLEE---PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 148 (237)
T ss_dssp CSSCCCCSEEHHHHHHTTSCCCT---THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred cCCCcCCCcCHHHHhhCccccCH---HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 88752 23333221111 111111111 1122111 112344455 999999999999998 6888
Q ss_pred EEEe-CCCCCCchh--------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 197 YIID-VSGGDKIPR--------------KGGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 197 ~llD-pt~g~~l~~--------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+++| |+++.|... ..+.+ +..||++++++.|++.+.|++.+++.
T Consensus 149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 8888 999865311 01111 25699999999999998888776553
No 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=2.5e-24 Score=189.54 Aligned_cols=178 Identities=15% Similarity=0.025 Sum_probs=121.4
Q ss_pred cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhc--ccCC-CcEEEEeecCCCCCHHHHH-Hhcc
Q 023354 57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFL-MRNG 131 (283)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~--~~~~-g~i~i~~~d~~~~~~~~~~-~~ig 131 (283)
..++++.|.. ..++++++|.. +|++++|+||||||||||+++|+|+ ++|+ |+|.+.+.++......++. ..++
T Consensus 6 ~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 83 (250)
T 2d2e_A 6 IRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLF 83 (250)
T ss_dssp EEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBC
T ss_pred EEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEE
Confidence 3445555532 35788999985 5999999999999999999999998 6777 9999999888766554443 3589
Q ss_pred ccCCchH--------HHHHhCCC---C-CCChHHHHHHHHHHHHHccc-cccCCCcccC--CchHHHHHHHHHHhc-CCc
Q 023354 132 ALPEERI--------RAVETGGC---P-HAAIREDISINLGPLEELSN-LFKADLLLCE--SGGDNLAANFSRELA-DYI 195 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~---~-~~~~~~~~~~~~~~l~~l~~-~~~~d~~i~e--SgGq~q~~~ia~al~-~~~ 195 (283)
|++|++. +.+.++.. . .....+....+.+.++.++. ....++.+.+ |+||+||++||++|+ +|.
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ 163 (250)
T 2d2e_A 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPT 163 (250)
T ss_dssp CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCS
T ss_pred EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCC
Confidence 9999753 12221110 0 00111222345567777776 3555666654 999999999999998 688
Q ss_pred EEEEe-CCCCCCchh------------hcCCc----------c-cc-cCEEEEEcCCcccccCChH
Q 023354 196 IYIID-VSGGDKIPR------------KGGPG----------I-TQ-ADLLVINKTDLASAIGADL 236 (283)
Q Consensus 196 l~llD-pt~g~~l~~------------~~~~~----------i-~~-ad~ivi~K~g~i~~~g~~~ 236 (283)
++++| |+++.|... +.+.+ + .+ ||++++++.|++.+.|++.
T Consensus 164 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 164 YAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp EEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 88888 999976321 11111 1 35 5999999999998877764
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.90 E-value=2.6e-24 Score=211.06 Aligned_cols=185 Identities=16% Similarity=0.192 Sum_probs=134.7
Q ss_pred CCc-cccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354 52 APH-SHEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL 127 (283)
Q Consensus 52 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~ 127 (283)
.+. +.+.++++.|+... .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..+++
T Consensus 338 ~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 338 FQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp CCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHH
Confidence 345 77888888887543 45889999985 49999999999999999999999999998 9999999999877777888
Q ss_pred HhccccCCchH-------HHHHhCCCCCC--ChHHHHHHHHHHHHHccc-------cccCCCcccC-----CchHHHHHH
Q 023354 128 MRNGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAAN 186 (283)
Q Consensus 128 ~~ig~v~q~~~-------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~-------~~~~d~~i~e-----SgGq~q~~~ 186 (283)
+.++|+||++. +.+.++ .+.. ...+. +.+.++.++. ..+++..+.+ ||||+||++
T Consensus 418 ~~i~~v~Q~~~l~~~tv~eni~~~-~~~~~~~~~~~---~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~ 493 (595)
T 2yl4_A 418 SKIGTVSQEPILFSCSIAENIAYG-ADDPSSVTAEE---IQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIA 493 (595)
T ss_dssp HSEEEECSSCCCCSSBHHHHHHTT-SSSTTTSCHHH---HHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHH
T ss_pred hceEEEccCCcccCCCHHHHHhhc-CCCccccCHHH---HHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 89999999863 233333 2220 11222 2333443322 2234555533 999999999
Q ss_pred HHHHhc-CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 187 FSRELA-DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 187 ia~al~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+||+++ +|.++++| ||++.|...+ .+.+ +..||+|++++.|++.+.|+..+++.
T Consensus 494 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 494 IARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC---
T ss_pred HHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999998 68777777 9998763211 1112 26799999999999999888766654
No 42
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.89 E-value=1.7e-24 Score=186.40 Aligned_cols=145 Identities=21% Similarity=0.171 Sum_probs=106.6
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (283)
.....++++.|.. ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++. .+++.++
T Consensus 10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 3566677777743 6789999985 59999999999999999999999999998 99999887764 2457799
Q ss_pred ccCCchH--------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354 132 ALPEERI--------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (283)
Q Consensus 132 ~v~q~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD- 200 (283)
|+||++. +.+.++...... ......+.+.++.++.... +..+.+ |+||+||++||++++ +|.++++|
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDE 159 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDD 159 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCC-chHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999752 122221000000 0011234567777776655 666766 999999999999999 58888888
Q ss_pred CCCCCCch
Q 023354 201 VSGGDKIP 208 (283)
Q Consensus 201 pt~g~~l~ 208 (283)
|+++.|..
T Consensus 160 Pts~LD~~ 167 (214)
T 1sgw_A 160 PVVAIDED 167 (214)
T ss_dssp TTTTSCTT
T ss_pred CCcCCCHH
Confidence 99997753
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.89 E-value=1.4e-23 Score=182.48 Aligned_cols=167 Identities=16% Similarity=0.118 Sum_probs=113.2
Q ss_pred cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (283)
+...++++.|.....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+ .++|
T Consensus 7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~ 73 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISF 73 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEE
T ss_pred EEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEE
Confidence 4555666777544557899999985 59999999999999999999999999998 9998865 3788
Q ss_pred cCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccccc-----------cCCCcccC-CchHHHHHHHHHHhc-
Q 023354 133 LPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA- 192 (283)
Q Consensus 133 v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-----------~~d~~i~e-SgGq~q~~~ia~al~- 192 (283)
+||++. +.+.++. ... ..... +.++.+.... ..+..+.+ |+||+||++|||+++
T Consensus 74 v~q~~~~~~~tv~enl~~~~-~~~--~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~ 147 (229)
T 2pze_A 74 CSQFSWIMPGTIKENIIFGV-SYD--EYRYR---SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 147 (229)
T ss_dssp ECSSCCCCSBCHHHHHHTTS-CCC--HHHHH---HHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS
T ss_pred EecCCcccCCCHHHHhhccC-CcC--hHHHH---HHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc
Confidence 888752 2233321 111 11111 1111111111 11122334 999999999999998
Q ss_pred CCcEEEEe-CCCCCCchh----------h--cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 193 DYIIYIID-VSGGDKIPR----------K--GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 193 ~~~l~llD-pt~g~~l~~----------~--~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|.++++| |+++.|... + .+.+ +..||++++++.|++.+.|++.+++.
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 58888888 999865321 0 0111 14699999999999998887766543
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.89 E-value=3.6e-23 Score=217.99 Aligned_cols=189 Identities=17% Similarity=0.178 Sum_probs=140.1
Q ss_pred CCccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354 52 APHSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM 128 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~ 128 (283)
.|.+.+.++++.|+... .+.+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 46788899999998653 468999999855 9999999999999999999999999998 99999999999888888899
Q ss_pred hccccCCchH------HHHHhCCCCC-CChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354 129 RNGALPEERI------RAVETGGCPH-AAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA 192 (283)
Q Consensus 129 ~ig~v~q~~~------~~i~~~g~~~-~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~ 192 (283)
.++||||++. ..+...+.+. ....+.+....+ .+.++. ...+++..+.| ||||+||++|||+++
T Consensus 1108 ~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A 1108 QLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp SCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence 9999999973 1222222221 111222221111 122221 23356666665 999999999999998
Q ss_pred -CCcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354 193 -DYIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 193 -~~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+|.|+++| ||++.|...+ .+. .+..||+|++++.|++.+.|++.+.+.
T Consensus 1188 ~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1188 RQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 57777777 9999764211 111 236799999999999999999887664
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.89 E-value=2.4e-23 Score=219.36 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=140.2
Q ss_pred CCCccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354 51 LAPHSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL 127 (283)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~ 127 (283)
..|.+.+.++++.|+... .+++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...++
T Consensus 384 ~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHH
Confidence 357789999999998754 478999999855 9999999999999999999999999998 9999999999988888999
Q ss_pred HhccccCCchH-------HHHHhCCCCCCChHHHHHHHH------HHHHHccccccCCCcccC-----CchHHHHHHHHH
Q 023354 128 MRNGALPEERI-------RAVETGGCPHAAIREDISINL------GPLEELSNLFKADLLLCE-----SGGDNLAANFSR 189 (283)
Q Consensus 128 ~~ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~------~~l~~l~~~~~~d~~i~e-----SgGq~q~~~ia~ 189 (283)
+.+|||+|++. +.+.++. +.... +.+.... +.+..+ ..+++..+.| ||||+||++|||
T Consensus 464 ~~i~~v~Q~~~l~~~ti~eNi~~g~-~~~~~-~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~QriaiAR 539 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFATTIAENIRYGR-EDVTM-DEIEKAVKEANAYDFIMKL--PHQFDTLVGERGAQLSGGQKQRIAIAR 539 (1284)
T ss_dssp HHEEEECSSCCCCSSCHHHHHHHHC-SSCCH-HHHHHHHHHTTCHHHHHHS--TTGGGCCCSSSSCSSCHHHHHHHHHHH
T ss_pred hheEEEcCCCccCCccHHHHHhcCC-CCCCH-HHHHHHHHHhCcHHHHHhc--cccccccccCCCCccCHHHHHHHHHHH
Confidence 99999999874 2333332 22221 1111111 112221 2345555554 999999999999
Q ss_pred Hhc-CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
+++ +|.|+++| ||++.|...+ .+.+ +..||+|++++.|++++.|+..+.+.
T Consensus 540 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 540 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 998 68777777 9998763211 1111 36799999999999999999887764
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=9.1e-24 Score=187.27 Aligned_cols=165 Identities=19% Similarity=0.069 Sum_probs=120.4
Q ss_pred CCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc-ccCCchHH------HH
Q 023354 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG-ALPEERIR------AV 141 (283)
Q Consensus 70 ~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~~------~i 141 (283)
..+++++|..+|++++|+||||||||||+++|+|++ |+ |+|.+.+.++... .. ++.++ |+||++.. .+
T Consensus 19 ~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l~~tv~enl 94 (263)
T 2pjz_A 19 FSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEIGVTVNDIV 94 (263)
T ss_dssp EEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCTTSBHHHHH
T ss_pred eeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCccCCcHHHHH
Confidence 468888888449999999999999999999999999 98 9999988776533 22 56799 99997521 11
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh--------
Q 023354 142 ETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-------- 209 (283)
Q Consensus 142 ~~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-------- 209 (283)
.++...... ....+.+.++.+++. ...+..+.+ |+||+||+++|++++ +|.++++| |+++.|...
T Consensus 95 ~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 171 (263)
T 2pjz_A 95 YLYEELKGL---DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI 171 (263)
T ss_dssp HHHHHHTCC---CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHhhhhcch---HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHH
Confidence 111000000 112345677777776 666777777 999999999999998 58888888 999976421
Q ss_pred -hcCCc-----------ccccC-EEEEEcCCcccccCChHHHHhH
Q 023354 210 -KGGPG-----------ITQAD-LLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 210 -~~~~~-----------i~~ad-~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
+...+ ..+|| ++++++.|++.+.|++.+++..
T Consensus 172 ~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 172 KEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp HHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred HHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 11102 26799 9999999999988888776643
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.85 E-value=1.2e-21 Score=175.90 Aligned_cols=167 Identities=16% Similarity=0.145 Sum_probs=103.7
Q ss_pred CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i 130 (283)
+.+...++++.+ ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+ .+
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 345555555542 46889999985 59999999999999999999999999987 9998764 37
Q ss_pred cccCCchH-------HHHHhCCCCCCChHHHHHHHHH------HHHHccccc--cCCCcccC-CchHHHHHHHHHHhc-C
Q 023354 131 GALPEERI-------RAVETGGCPHAAIREDISINLG------PLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-D 193 (283)
Q Consensus 131 g~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~------~l~~l~~~~--~~d~~i~e-SgGq~q~~~ia~al~-~ 193 (283)
+|+||++. +.+. +.... ........+ .+..+.... ..+..+.+ ||||+||++|||+++ +
T Consensus 102 ~~v~Q~~~l~~~tv~enl~--~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII--GVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH--TTCCC--HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEeCCCccCcccHHHHhh--Ccccc--hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 88888752 2222 22111 111111111 111111000 11122334 999999999999998 4
Q ss_pred CcEEEEe-CCCCCCchh----------hc--CCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354 194 YIIYIID-VSGGDKIPR----------KG--GPG----------ITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 194 ~~l~llD-pt~g~~l~~----------~~--~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
|.++++| |+++.|... +. +.+ +..||++++++.|++.+.|++.+++.
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 8888888 999865321 10 111 25699999999999998888877654
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.78 E-value=2.5e-19 Score=175.65 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=107.4
Q ss_pred ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC
Q 023354 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149 (283)
Q Consensus 72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~ 149 (283)
+...+|. .+|++++|+||||||||||+++|+|+++|+ |+|.+ ...+||+||++... ...
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~------~~~ 432 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAE------YEG 432 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCC------CSS
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCC------CCC
Confidence 4444444 469999999999999999999999999987 88864 13589999875210 001
Q ss_pred ChHH-----------HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchh------
Q 023354 150 AIRE-----------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPR------ 209 (283)
Q Consensus 150 ~~~~-----------~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~------ 209 (283)
++.+ ....+.+.|+.++.....++.+.+ ||||+||++||++|+. |.|+|+| ||++.|...
T Consensus 433 tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~ 512 (607)
T 3bk7_A 433 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 512 (607)
T ss_dssp BHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHH
Confidence 1110 112344567777777777888877 9999999999999994 8888888 999976431
Q ss_pred -------hcCCcc-----------cccCEEEEEcC--CcccccCChHHHHhH
Q 023354 210 -------KGGPGI-----------TQADLLVINKT--DLASAIGADLAVMER 241 (283)
Q Consensus 210 -------~~~~~i-----------~~ad~ivi~K~--g~i~~~g~~~e~~~~ 241 (283)
+.+.++ .+||+|++++. +.+...|++.+++..
T Consensus 513 ~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 513 AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 112221 67999999984 555567888776653
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.78 E-value=1.1e-19 Score=176.17 Aligned_cols=151 Identities=19% Similarity=0.127 Sum_probs=105.8
Q ss_pred ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC
Q 023354 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149 (283)
Q Consensus 72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~ 149 (283)
+...+|. .+|++++|+||||||||||+++|+|+++|+ |+|.+ ...+||+||++... +..
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~------~~~ 362 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKAD------YEG 362 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCC------CSS
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCC------CCC
Confidence 3344443 469999999999999999999999999987 88864 13588999875210 111
Q ss_pred ChHHH-----------HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354 150 AIRED-----------ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------ 209 (283)
Q Consensus 150 ~~~~~-----------~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------ 209 (283)
++.+. ...+.+.++.++.....++.+.+ ||||+||+.||++|+ +|.|+|+| ||++.|+..
T Consensus 363 tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~ 442 (538)
T 1yqt_A 363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 442 (538)
T ss_dssp BHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11111 11234456666666667777777 999999999999999 48888888 999976431
Q ss_pred -------hcCCcc-----------cccCEEEEEcC--CcccccCChHHHHhH
Q 023354 210 -------KGGPGI-----------TQADLLVINKT--DLASAIGADLAVMER 241 (283)
Q Consensus 210 -------~~~~~i-----------~~ad~ivi~K~--g~i~~~g~~~e~~~~ 241 (283)
+.+.++ .+||+|++++. +.+...|++.+++..
T Consensus 443 ~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 443 AIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 112221 68999999984 566667887776653
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.76 E-value=1e-18 Score=169.22 Aligned_cols=137 Identities=18% Similarity=0.127 Sum_probs=95.2
Q ss_pred ccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHhCC
Q 023354 76 NFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGG 145 (283)
Q Consensus 76 ~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~~g 145 (283)
+|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+ ..++|++|+.. +.+....
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~~~q~~~~~~~~tv~~~l~~~~ 355 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSYKPQRIFPNYDGTVQQYLENAS 355 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEEECSSCCCCCSSBHHHHHHHHC
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEeechhcccccCCCHHHHHHHhh
Confidence 443 469999999999999999999999999998 9987533 24566666431 1122111
Q ss_pred CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------------
Q 023354 146 CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------------- 209 (283)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------------- 209 (283)
...... ....+.+.++.+.+....++.+.+ ||||+||++||++|+ +|.|+|+| ||++.|...
T Consensus 356 ~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~ 433 (538)
T 3ozx_A 356 KDALST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR 433 (538)
T ss_dssp SSTTCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhccch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 111000 011234566777777777888887 999999999999998 48888888 999976431
Q ss_pred hcCCc-----------ccccCEEEEEcC
Q 023354 210 KGGPG-----------ITQADLLVINKT 226 (283)
Q Consensus 210 ~~~~~-----------i~~ad~ivi~K~ 226 (283)
+.+.+ ..+||+|++++.
T Consensus 434 ~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 434 ERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 11222 167999999985
No 51
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.75 E-value=1.1e-18 Score=159.86 Aligned_cols=202 Identities=18% Similarity=0.185 Sum_probs=129.1
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHHHHhccccCCchHHHHHhC
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIRAVETG 144 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~~~~ig~v~q~~~~~i~~~ 144 (283)
.+.+++|.. +|++++|+||||||||||+++|+|++.|+ |+|.+.+.++.+... ...++++++++|++..++..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~- 122 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRP- 122 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEEC-
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccccc-
Confidence 566777764 59999999999999999999999999886 999999998864321 12356799999975433221
Q ss_pred CCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEE
Q 023354 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVIN 224 (283)
Q Consensus 145 g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~ 224 (283)
-..+|........+.+.+..+ ....++.+++|+.|..+........++..++++|+..++++........+.++.+++|
T Consensus 123 ~~~~~~l~G~tr~~~e~~~~~-~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlN 201 (337)
T 2qm8_A 123 SPSSGTLGGVAAKTRETMLLC-EAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVN 201 (337)
T ss_dssp CCCCSSHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEE
T ss_pred CcccccccchHHHHHHHHHHH-hcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEE
Confidence 111233333333333444222 3457888899988876543333445678889999876654321111123568899999
Q ss_pred cCCcccccCChHHHHhHHH---HhhcC------CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 225 KTDLASAIGADLAVMERDA---LRMRD------GGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 225 K~g~i~~~g~~~e~~~~~~---~~~~~------~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
|+|+.... .......+.+ ..... ..+++++|++++.|+++|+++|.+..+
T Consensus 202 K~Dl~~~~-~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99975321 0111111111 11111 467899999999999999999988765
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3e-18 Score=167.90 Aligned_cols=160 Identities=13% Similarity=-0.008 Sum_probs=96.4
Q ss_pred CCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee------cCCCCCHHH-----HHHhccc--cCC
Q 023354 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN------DIFTKEDGE-----FLMRNGA--LPE 135 (283)
Q Consensus 70 ~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~------d~~~~~~~~-----~~~~ig~--v~q 135 (283)
..+.+.....+|++++|+||||||||||||+|+|+++|+ |+|..... .+....... +...+.+ .+|
T Consensus 92 ~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (608)
T 3j16_B 92 FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ 171 (608)
T ss_dssp CEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECC
T ss_pred eeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchh
Confidence 345566666789999999999999999999999999998 88621000 000000000 0011111 111
Q ss_pred chHHHHHhCCCCCCChHH--------HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 136 ERIRAVETGGCPHAAIRE--------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 136 ~~~~~i~~~g~~~~~~~~--------~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
...........+.....+ ....+.+.++.+++....++.+.+ ||||+||++||++|+ +|.++++| ||++
T Consensus 172 ~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~ 251 (608)
T 3j16_B 172 YVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY 251 (608)
T ss_dssp CTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTT
T ss_pred hhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccC
Confidence 110000000000001110 113455678888887778888888 999999999999998 58888888 9999
Q ss_pred CCchh------------hcCCcc-----------cccCEEEEEcCCcc
Q 023354 205 DKIPR------------KGGPGI-----------TQADLLVINKTDLA 229 (283)
Q Consensus 205 ~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i 229 (283)
+|... +.+.++ .+||+|++++.+..
T Consensus 252 LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 252 LDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp CCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 76421 111221 57999999986543
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.9e-18 Score=167.95 Aligned_cols=155 Identities=17% Similarity=0.069 Sum_probs=107.5
Q ss_pred CcccccccCC-C-----cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-----
Q 023354 71 PILSRNFNER-A-----FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (283)
Q Consensus 71 ~~~~~~~~~~-g-----~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (283)
.+.+++|... | ++++|+||||||||||+++|+|+++|+ |+. +. ...++|++|+..
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCCCS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccCCc
Confidence 4556666532 4 889999999999999999999999998 752 11 124667776521
Q ss_pred ---HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---
Q 023354 139 ---RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR--- 209 (283)
Q Consensus 139 ---~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~--- 209 (283)
+.+... ...... ......+.++.+.+....+..+.+ ||||+||++||++|+ +|.|+|+| ||++.|...
T Consensus 429 tv~e~~~~~-~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~ 505 (608)
T 3j16_B 429 TVRQLFFKK-IRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRII 505 (608)
T ss_dssp BHHHHHHHH-CSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHH
T ss_pred cHHHHHHHH-hhcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHH
Confidence 111111 110000 112234567777777778888888 999999999999999 48888888 999976421
Q ss_pred ----------hcCCc-----------ccccCEEEEEcC--CcccccCChHHHHhH
Q 023354 210 ----------KGGPG-----------ITQADLLVINKT--DLASAIGADLAVMER 241 (283)
Q Consensus 210 ----------~~~~~-----------i~~ad~ivi~K~--g~i~~~g~~~e~~~~ 241 (283)
+.+.+ ..+||+|++++. |.+.+.|++.+++..
T Consensus 506 i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 506 CSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 11222 167999999985 888888988888775
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.73 E-value=2.6e-18 Score=174.93 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=51.8
Q ss_pred ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~ 115 (283)
.+...++++.|+....+.+++++|.. +|++++|+||||||||||+|+|+|+++|+ |+|.+.+
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 35566777777654456789999985 59999999999999999999999999998 9998753
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.73 E-value=3.5e-18 Score=165.53 Aligned_cols=166 Identities=17% Similarity=0.104 Sum_probs=104.0
Q ss_pred ccCCCCCCCCCCCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee----cCCCCCHH----H-H-
Q 023354 58 PIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDG----E-F- 126 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~----d~~~~~~~----~-~- 126 (283)
.++++.|.. ...++.+++...+|++++|+||||||||||+|+|+|+++|+ |++..... .+...... . .
T Consensus 25 ~~ls~~yg~-~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (538)
T 1yqt_A 25 EDCVHRYGV-NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103 (538)
T ss_dssp CCEEEECST-TCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred cCcEEEECC-ccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence 345555532 22467777722679999999999999999999999999987 87310000 01111111 1 1
Q ss_pred -HHhccccCCchHHHHHhCCCCCCChHHHH------HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354 127 -LMRNGALPEERIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (283)
Q Consensus 127 -~~~ig~v~q~~~~~i~~~g~~~~~~~~~~------~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ 197 (283)
...+++++|........ .. .+..+.+ ..+.+.|+.+++....++.+.+ ||||+||++||++|+ +|.|+
T Consensus 104 ~~~~~~~~~q~~~~~~~~--~~-~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lL 180 (538)
T 1yqt_A 104 GEIRPVVKPQYVDLIPKA--VK-GKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFY 180 (538)
T ss_dssp TSCCCEEECSCGGGSGGG--CC-SBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred Hhhhhhhhhhhhhhcchh--hh-ccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 12356666653211110 00 1122211 1345678888877777888887 999999999999998 58888
Q ss_pred EEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCC
Q 023354 198 IID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTD 227 (283)
Q Consensus 198 llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g 227 (283)
|+| ||+++|... +.+.++ .+||+|++++.+
T Consensus 181 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 181 FFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 888 999976431 112221 579999998754
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.73 E-value=3.4e-18 Score=167.64 Aligned_cols=166 Identities=20% Similarity=0.137 Sum_probs=104.4
Q ss_pred ccCCCCCCCCCCCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee----cCCCCCHH----HH--
Q 023354 58 PIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDG----EF-- 126 (283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~----d~~~~~~~----~~-- 126 (283)
.+++..|.. ....+.+++...+|++++|+|||||||||||++|+|+++|+ |++..... .+...... ..
T Consensus 95 ~~ls~~yg~-~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGV-NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECST-TCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECC-CCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 345555532 22467777723679999999999999999999999999987 88410000 01111111 11
Q ss_pred -HHhccccCCchHHHHHhCCCCCCChHHHH------HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354 127 -LMRNGALPEERIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (283)
Q Consensus 127 -~~~ig~v~q~~~~~i~~~g~~~~~~~~~~------~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ 197 (283)
...+++++|........ .. .+..+.+ ..+.+.|+.+++....++.+.+ ||||+||++||++|+ +|.|+
T Consensus 174 ~~~~i~~~~q~~~~~~~~--~~-~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lL 250 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKA--VK-GKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY 250 (607)
T ss_dssp TSCCCEEECSCGGGGGGT--CC-SBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhcceEEeechhhhchhh--cc-ccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 12356666653211110 00 0222211 1345678888877777888877 999999999999998 58888
Q ss_pred EEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCC
Q 023354 198 IID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTD 227 (283)
Q Consensus 198 llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g 227 (283)
|+| ||+++|... +.+.++ .+||+|++++.+
T Consensus 251 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 888 999976431 112221 579999999854
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.71 E-value=5.3e-18 Score=168.36 Aligned_cols=173 Identities=20% Similarity=0.188 Sum_probs=96.4
Q ss_pred CCCCcccccccC-CCcEEEEEcCCCCcHHHHH---------------------HHHHhcccCC-CcEEEEeecCC--CCC
Q 023354 68 RAPPILSRNFNE-RAFTVGIGGPVGTGKTALM---------------------LALCKFLRDK-YSLAAVTNDIF--TKE 122 (283)
Q Consensus 68 ~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl---------------------~~L~g~~~~~-g~i~i~~~d~~--~~~ 122 (283)
...++++++|.. +|++++|+||||||||||+ +.+.++..|+ +.+......+. ...
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 345799999985 5999999999999999998 7777777776 44432211110 000
Q ss_pred -HHHHHHhccccCCchHHH---------------------------HHhC-CCCCCChHH--------HHHHHHHHHHHc
Q 023354 123 -DGEFLMRNGALPEERIRA---------------------------VETG-GCPHAAIRE--------DISINLGPLEEL 165 (283)
Q Consensus 123 -~~~~~~~ig~v~q~~~~~---------------------------i~~~-g~~~~~~~~--------~~~~~~~~l~~l 165 (283)
....+..+|+++|....+ +.+. +........ ........|+.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 111123455555532110 0000 000000000 000112235556
Q ss_pred ccccc-CCCcccC-CchHHHHHHHHHHhcC-Cc--EEEEe-CCCCCCchh------------hcCCc----------ccc
Q 023354 166 SNLFK-ADLLLCE-SGGDNLAANFSRELAD-YI--IYIID-VSGGDKIPR------------KGGPG----------ITQ 217 (283)
Q Consensus 166 ~~~~~-~d~~i~e-SgGq~q~~~ia~al~~-~~--l~llD-pt~g~~l~~------------~~~~~----------i~~ 217 (283)
++.+. .++.+.+ ||||+||++|||+|+. |. |+|+| ||++.|... +.+.+ +..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 55443 4677777 9999999999999984 55 77777 999976421 11222 256
Q ss_pred cCEEEEE------cCCcccccCChHHHHh
Q 023354 218 ADLLVIN------KTDLASAIGADLAVME 240 (283)
Q Consensus 218 ad~ivi~------K~g~i~~~g~~~e~~~ 240 (283)
||+|+++ +.|++++.|++.+++.
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhc
Confidence 9999999 8999999888877654
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.69 E-value=1.5e-17 Score=160.95 Aligned_cols=155 Identities=14% Similarity=0.020 Sum_probs=96.1
Q ss_pred CcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEE-----------EEeecCCCCCHHHHHHhcc--ccCCc
Q 023354 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFLMRNG--ALPEE 136 (283)
Q Consensus 71 ~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~-----------i~~~d~~~~~~~~~~~~ig--~v~q~ 136 (283)
.+.+..+..+|++++|+||||||||||+|+|+|+++|+ |++. +.+.++............+ ...|.
T Consensus 15 ~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 94 (538)
T 3ozx_A 15 KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQY 94 (538)
T ss_dssp EEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSC
T ss_pred eecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccch
Confidence 45566777889999999999999999999999999997 8762 1111111000000001111 11111
Q ss_pred hHHHHHhCCCCCCChHHHH------HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354 137 RIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (283)
Q Consensus 137 ~~~~i~~~g~~~~~~~~~~------~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l 207 (283)
... ..........+.+ ..+.+.++.++.....++.+.+ ||||+||++||++|+ +|.|+++| ||+++|.
T Consensus 95 ~~~---~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~ 171 (538)
T 3ozx_A 95 VEY---ASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDV 171 (538)
T ss_dssp TTG---GGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred hhh---hhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 100 0000001111111 1244577788877788888888 999999999999998 58888888 9999764
Q ss_pred hh---------hc--CCcc-----------cccCEEEEEcCCc
Q 023354 208 PR---------KG--GPGI-----------TQADLLVINKTDL 228 (283)
Q Consensus 208 ~~---------~~--~~~i-----------~~ad~ivi~K~g~ 228 (283)
.. +. +.++ ..||+|++++.+.
T Consensus 172 ~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 172 RERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 31 11 2221 6799999997543
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.68 E-value=3.6e-17 Score=162.38 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=58.5
Q ss_pred HHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC-C---cEEEEe-CCCCCCchh------------hcCCc----
Q 023354 158 NLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD-Y---IIYIID-VSGGDKIPR------------KGGPG---- 214 (283)
Q Consensus 158 ~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~-~---~l~llD-pt~g~~l~~------------~~~~~---- 214 (283)
..+.|..+.+.. ..+..+.+ ||||+||++|||+|+. | .|+|+| ||++.|... +.+.+
T Consensus 523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~v 602 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 602 (670)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 344566665543 34566666 9999999999999974 4 477777 999976321 11222
Q ss_pred ------ccccCEEEEE------cCCcccccCChHHHH
Q 023354 215 ------ITQADLLVIN------KTDLASAIGADLAVM 239 (283)
Q Consensus 215 ------i~~ad~ivi~------K~g~i~~~g~~~e~~ 239 (283)
+..||+|+++ +.|++++.|++.++.
T Consensus 603 tHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 603 EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp CCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred eCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 2679999999 899999999887764
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.62 E-value=7.4e-16 Score=156.97 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=105.2
Q ss_pred cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354 59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
+.+..|. ....+++++|.. +|++++|+|||||||||||++|+| |.+ .+.+... . .+++|++|+.
T Consensus 440 ~ls~~yg--~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~----~--~~~~~v~q~~ 504 (986)
T 2iw3_A 440 EFSLAYG--AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQE----E--CRTVYVEHDI 504 (986)
T ss_dssp EEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTT----T--SCEEETTCCC
T ss_pred eEEEEEC--CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCcccc----c--eeEEEEcccc
Confidence 3444443 235788899985 599999999999999999999996 222 1111100 0 1246666542
Q ss_pred ---------HHHHHhCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 138 ---------IRAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 138 ---------~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
.+++.. ... .. ...+.+.|+.++.. ...++.+.+ ||||+||+.||++++ +|.|+|+| ||++
T Consensus 505 ~~~~~~ltv~e~l~~-~~~--~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~ 578 (986)
T 2iw3_A 505 DGTHSDTSVLDFVFE-SGV--GT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNH 578 (986)
T ss_dssp CCCCTTSBHHHHHHT-TCS--SC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTT
T ss_pred cccccCCcHHHHHHH-hhc--CH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 122222 110 01 23445677777763 455666666 999999999999998 58888888 9999
Q ss_pred CCchh---------hcCCcc-----------cccCEEEEEcCCccc-ccCChHHHHh
Q 023354 205 DKIPR---------KGGPGI-----------TQADLLVINKTDLAS-AIGADLAVME 240 (283)
Q Consensus 205 ~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~-~~g~~~e~~~ 240 (283)
.|... +.+.++ .+||+|++++.|++. +.|+..+.+.
T Consensus 579 LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 579 LDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 76431 122221 679999999999986 5677766543
No 61
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.61 E-value=5.7e-16 Score=142.39 Aligned_cols=189 Identities=18% Similarity=0.218 Sum_probs=101.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-------HHHHHhccccCCchHHHH-Hh-CCCCCC
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-------GEFLMRNGALPEERIRAV-ET-GGCPHA 149 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-------~~~~~~ig~v~q~~~~~i-~~-~g~~~~ 149 (283)
++.+|+|+|+||||||||+|.|++.+.+. +++.+.+.|+.+... ..+.+..+. .+..++ .+ .+|.++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~---~~~~~v~~~~~~~~lg 149 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSR---DMNAYIRPSPTRGTLG 149 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTT---CTTEEEECC-------
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcC---CCCEEEEecCCccccc
Confidence 48899999999999999999999988876 899999999875421 111111110 000000 00 111111
Q ss_pred ChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcc
Q 023354 150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 229 (283)
Q Consensus 150 ~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i 229 (283)
....+ ..+.+..+ ....++.++.++.|..+........++.+++|+|++.+...+......++.++.+++||+|+.
T Consensus 150 g~tr~---~~~~~~~~-~~~~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 150 GVTRT---TNEAILLC-EGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGD 225 (349)
T ss_dssp --CTT---HHHHHHHH-HHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGG
T ss_pred cchHH---HHHHHHhh-ccCCCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCC
Confidence 00001 11222222 234678888888886543322234567889999988765432111123466889999999986
Q ss_pred cccCC--hHHHHhHHHHhhcC-----CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 230 SAIGA--DLAVMERDALRMRD-----GGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 230 ~~~g~--~~e~~~~~~~~~~~-----~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
...+. ..+.+...+....+ ..+++++|+++|.|+++|+++|....+
T Consensus 226 ~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 226 LIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp GHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 43110 01111111111121 357889999999999999999987654
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.61 E-value=7.4e-16 Score=156.11 Aligned_cols=83 Identities=24% Similarity=0.336 Sum_probs=61.1
Q ss_pred HHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchh------------hcCCc----
Q 023354 158 NLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPR------------KGGPG---- 214 (283)
Q Consensus 158 ~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~------------~~~~~---- 214 (283)
..+.|+.+++.. ..+..+.+ ||||+||+.||++|+. +.|+|+| ||+|.|... ..+.+
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 904 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 904 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 345677777665 45666666 9999999999999984 4788887 999976421 11222
Q ss_pred ------ccccCEEEEE------cCCcccccCChHHHHh
Q 023354 215 ------ITQADLLVIN------KTDLASAIGADLAVME 240 (283)
Q Consensus 215 ------i~~ad~ivi~------K~g~i~~~g~~~e~~~ 240 (283)
+..||+|+++ +.|++++.|++.+++.
T Consensus 905 sHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 905 EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp CCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred cCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 2679999999 7899999888876653
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.59 E-value=1.9e-15 Score=153.58 Aligned_cols=83 Identities=20% Similarity=0.256 Sum_probs=61.5
Q ss_pred HHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchh------------hcCCc----
Q 023354 158 NLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPR------------KGGPG---- 214 (283)
Q Consensus 158 ~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~------------~~~~~---- 214 (283)
..+.|+.+++.. ..+..+.+ ||||+||+.||++|+. +.|+|+| ||+|.+... ..+.+
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 922 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVI 922 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 345677777765 45666666 9999999999999984 4788888 999976421 11222
Q ss_pred ------ccccCEEEEE------cCCcccccCChHHHHh
Q 023354 215 ------ITQADLLVIN------KTDLASAIGADLAVME 240 (283)
Q Consensus 215 ------i~~ad~ivi~------K~g~i~~~g~~~e~~~ 240 (283)
+..||+|+++ +.|++++.|++.+++.
T Consensus 923 sHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 923 EHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp CCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred cCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 2679999999 7899999888877653
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.58 E-value=5.5e-16 Score=156.30 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=61.7
Q ss_pred HHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchh------------hcCCc---
Q 023354 157 INLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPR------------KGGPG--- 214 (283)
Q Consensus 157 ~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~------------~~~~~--- 214 (283)
.+.+.|+.+++.. ..+..+.+ ||||+||+.||++|+. +.|+|+| ||+|.|... +.+.+
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3456677777665 34666666 9999999999999985 5788888 999976421 11222
Q ss_pred -------ccccCEEEEE------cCCcccccCChHHHHh
Q 023354 215 -------ITQADLLVIN------KTDLASAIGADLAVME 240 (283)
Q Consensus 215 -------i~~ad~ivi~------K~g~i~~~g~~~e~~~ 240 (283)
+..||+|+++ +.|++++.|++.+++.
T Consensus 789 isHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 789 VEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp ECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 2679999999 7899998888876543
No 65
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.57 E-value=2.5e-14 Score=131.59 Aligned_cols=189 Identities=19% Similarity=0.228 Sum_probs=112.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCC---------
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH--------- 148 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~--------- 148 (283)
.+..+|+|+|++|+|||||++.|+..+... .++.++..|+..... .|.+.++.......+..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~------~g~~l~d~~~~~~~~~~~~~~i~~~~~~ 150 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRT------GGSILGDKTRMARLAVHPNAYIRPSPTS 150 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------------CHHHHTCTTEEEECCC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcc------cchhccchhhHHhhccCCCeeEEECCCC
Confidence 346799999999999999999999877655 588888888765321 1111111111111110000
Q ss_pred CChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCc
Q 023354 149 AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL 228 (283)
Q Consensus 149 ~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~ 228 (283)
+..........+.+..+ ....++.+++++.|..+........+|.+++++||+.++.+........+.++.+|+||+|+
T Consensus 151 ~~~~~~~~~t~d~i~~~-~~~~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 151 GTLGGVTRATRETVVLL-EAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADG 229 (355)
T ss_dssp CCHHHHHHHHHHHHHHH-HHTTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCG
T ss_pred ccccchhHHHHHHHHHH-hhCCCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCC
Confidence 01111112223334322 33567888889777655544444567889999999877655332223456789999999998
Q ss_pred ccccCChHHHHhHHHHhh---c------CCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 229 ASAIGADLAVMERDALRM---R------DGGPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 229 i~~~g~~~e~~~~~~~~~---~------~~~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
.... ..+.....+... . ...|++.+||++|.|+++|+++|...++.
T Consensus 230 ~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 230 EHHK--EARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGHH--HHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cChh--HHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7442 111122222221 1 14789999999999999999999887654
No 66
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.55 E-value=1e-15 Score=138.09 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=100.6
Q ss_pred ccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHH--HHhccccCCchHHHHHhCC
Q 023354 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERIRAVETGG 145 (283)
Q Consensus 74 ~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~--~~~ig~v~q~~~~~i~~~g 145 (283)
.++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.|+..... ..+ +..++|++|++. ..
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-----~~ 166 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-----KA 166 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-------CC
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-----cc
Confidence 45664 459999999999999999999999999887 999999988754321 122 346899988642 01
Q ss_pred CCCCChHHHHHHHHH------HHHHccccccCCCcccC-CchHHHHHHHHHHhcC-Cc--EEEEeCCCCCCchhhcCCcc
Q 023354 146 CPHAAIREDISINLG------PLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YI--IYIIDVSGGDKIPRKGGPGI 215 (283)
Q Consensus 146 ~~~~~~~~~~~~~~~------~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~--l~llDpt~g~~l~~~~~~~i 215 (283)
.+.....+.+..... .++.+++....+..+.+ | +||+.+|++++. |. ++++||+++.+.........
T Consensus 167 ~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~~ 243 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFN 243 (302)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHHH
Confidence 111111111110000 00001111111111222 3 789999999984 87 99999999876543221110
Q ss_pred --cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354 216 --TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 216 --~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~ 265 (283)
.-...|+++|.|....-|....... ..+.|+.++. +|+.+++
T Consensus 244 ~~~g~t~iiiThlD~~~~~g~~l~~~~------~~~~pi~~i~--~Ge~~~d 287 (302)
T 3b9q_A 244 EVVGITGLILTKLDGSARGGCVVSVVE------ELGIPVKFIG--VGEAVED 287 (302)
T ss_dssp HHTCCCEEEEECCSSCSCTHHHHHHHH------HHCCCEEEEE--CSSSGGG
T ss_pred HhcCCCEEEEeCCCCCCccChheehHH------HHCCCEEEEe--CCCChhh
Confidence 1245799999776533222222211 1256777775 4555543
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.55 E-value=2.6e-17 Score=140.77 Aligned_cols=109 Identities=18% Similarity=0.111 Sum_probs=66.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHH-HhCCCCCCChH--HH
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ETGGCPHAAIR--ED 154 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i-~~~g~~~~~~~--~~ 154 (283)
.+|++++|+||||||||||+++|+|+ +|+ |+|.... +.. ....+++.+||+||++.+.+ .+......... ..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~--~~~-~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~ 95 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRII--LTR-PAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVE 95 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEE--EEE-CSCCTTCCCCSSCC------CTTTHHHHHHHTTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEE--ecC-CchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhcc
Confidence 56999999999999999999999999 886 8884321 111 11123567999999863222 11000000000 00
Q ss_pred HHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354 155 ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGG 204 (283)
Q Consensus 155 ~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g 204 (283)
...+.+.++. ..||+||++|||+++ +|.++++| |+++
T Consensus 96 ~~~~~~~l~~-------------glGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 96 PEVIPKLMEA-------------GIVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp TTHHHHHHHT-------------TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHHh-------------CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0011112221 129999999999998 58888888 9988
No 68
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.54 E-value=2.4e-15 Score=138.55 Aligned_cols=177 Identities=16% Similarity=0.152 Sum_probs=102.7
Q ss_pred ccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHH--HHhccccCCchHHHHHhCC
Q 023354 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERIRAVETGG 145 (283)
Q Consensus 74 ~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~--~~~ig~v~q~~~~~i~~~g 145 (283)
.++|. .+|++++|+||||||||||++.|+|+++|+ |+|.+.+.|+..... ..+ +..+++++|++.. .
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-----~ 223 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-----A 223 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-----C
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-----c
Confidence 35554 459999999999999999999999999887 999999988754211 112 3468999886310 0
Q ss_pred CCCCChHHHHHHHHH------HHHHccccccCCCcccC-CchHHHHHHHHHHhcC-Cc--EEEEeCCCCCCchhhcCCcc
Q 023354 146 CPHAAIREDISINLG------PLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YI--IYIIDVSGGDKIPRKGGPGI 215 (283)
Q Consensus 146 ~~~~~~~~~~~~~~~------~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~--l~llDpt~g~~l~~~~~~~i 215 (283)
.+.....+.+..... .++.+++....+..+.| | +||+.+|++++. |. ++++||+++.+.........
T Consensus 224 ~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDpttglD~~~~~~~~~ 300 (359)
T 2og2_A 224 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFN 300 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred ChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHHHHH
Confidence 111111111110000 00001111111111222 4 789999999984 77 99999999876543211100
Q ss_pred --cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354 216 --TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI 266 (283)
Q Consensus 216 --~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l 266 (283)
.-...|+++|.|....-|....... ..+.|+.++. .|+.+++|
T Consensus 301 ~~~g~t~iiiThlD~~~~gG~~lsi~~------~~~~pI~~ig--~Ge~~~Dl 345 (359)
T 2og2_A 301 EVVGITGLILTKLDGSARGGCVVSVVE------ELGIPVKFIG--VGEAVEDL 345 (359)
T ss_dssp HHTCCCEEEEESCTTCSCTHHHHHHHH------HHCCCEEEEE--CSSSGGGE
T ss_pred HhcCCeEEEEecCcccccccHHHHHHH------HhCCCEEEEe--CCCChHhc
Confidence 1246899999876544333322221 1256887776 56666543
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.54 E-value=1e-16 Score=144.48 Aligned_cols=152 Identities=11% Similarity=-0.053 Sum_probs=93.0
Q ss_pred ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHH-hcc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNG 131 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~-~ig 131 (283)
.+.+.++++.|+ .+++++++|..+ |++++|+||||||||||+++|+|++ .|+|..........-...++. +++
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~ 175 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAA 175 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCE
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhc
Confidence 366778888876 457888899855 9999999999999999999999998 688743221111000011111 222
Q ss_pred ccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEeCCCCCCchh
Q 023354 132 ALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIPR 209 (283)
Q Consensus 132 ~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llDpt~g~~l~~ 209 (283)
+.++ .. . .+.+.+..+ +...++ ... |+||+|| ||+++ +|.|+| |++.|...
T Consensus 176 ~~~~-------------~~--~---~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl---Ts~LD~~~ 228 (305)
T 2v9p_A 176 LVDD-------------AT--H---ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV---TSNIDVQA 228 (305)
T ss_dssp EEEE-------------EC--H---HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE---EESSCSTT
T ss_pred cCcc-------------cc--H---HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---ECCCCHHH
Confidence 2110 00 1 112333432 222333 233 9999999 88888 477777 55544322
Q ss_pred hc--------CCcccccCEEEEEcCCcccccCChHHH
Q 023354 210 KG--------GPGITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 210 ~~--------~~~i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+. ...+..||+| +++.|++++.|+..+.
T Consensus 229 ~~~i~~ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 229 EDRYLYLHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp CGGGGGGTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred HHHHHHHhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 11 1235789999 9999999999988776
No 70
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.51 E-value=4.6e-17 Score=144.66 Aligned_cols=139 Identities=17% Similarity=0.057 Sum_probs=73.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-----HHHhCCCCCCCh-HHH
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-----AVETGGCPHAAI-RED 154 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-----~i~~~g~~~~~~-~~~ 154 (283)
..++|+||||||||||+|+|+|+..|+ |++.+.+.++... ..++.+++++|+... ++++.++..... ...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 479999999999999999999999987 9999888766432 123578999997531 122222211100 000
Q ss_pred HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcCCcEEEEeCC-CCCCchh-----hcCCcccccCEEEEEcCC
Q 023354 155 ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVS-GGDKIPR-----KGGPGITQADLLVINKTD 227 (283)
Q Consensus 155 ~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~~~l~llDpt-~g~~l~~-----~~~~~i~~ad~ivi~K~g 227 (283)
...+.+.+. ....+....+ |+||+||+.+||+++ .++++||+ .+.+... .... ...-++|++|.|
T Consensus 80 ~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~--~lllldep~~gL~~lD~~~l~~L~~--~~~vI~Vi~K~D 151 (270)
T 3sop_A 80 WEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHC--CLYFISPTGHSLRPLDLEFMKHLSK--VVNIIPVIAKAD 151 (270)
T ss_dssp SHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCE--EEEEECCCSSSCCHHHHHHHHHHHT--TSEEEEEETTGG
T ss_pred HHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeee--eeEEEecCCCcCCHHHHHHHHHHHh--cCcEEEEEeccc
Confidence 001111111 1111222333 999999999998765 48888854 6654221 1111 134578899999
Q ss_pred cccc
Q 023354 228 LASA 231 (283)
Q Consensus 228 ~i~~ 231 (283)
.+..
T Consensus 152 ~lt~ 155 (270)
T 3sop_A 152 TMTL 155 (270)
T ss_dssp GSCH
T ss_pred cCCH
Confidence 8865
No 71
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.51 E-value=8.1e-14 Score=141.61 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=61.9
Q ss_pred HHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchh------------hcCCc---
Q 023354 157 INLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPR------------KGGPG--- 214 (283)
Q Consensus 157 ~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~------------~~~~~--- 214 (283)
...+.|+.+++.+. .+....+ ||||+||+.||++|+. +.|+|+| ||+|++... ..+.+
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 34556777776542 4555656 9999999999999984 4588887 999976421 11222
Q ss_pred -------ccccCEEEEE------cCCcccccCChHHHHh
Q 023354 215 -------ITQADLLVIN------KTDLASAIGADLAVME 240 (283)
Q Consensus 215 -------i~~ad~ivi~------K~g~i~~~g~~~e~~~ 240 (283)
+..||+|+++ +.|++++.|++.+++.
T Consensus 864 I~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 864 IEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp ECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 2679999999 9999999999988764
No 72
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.50 E-value=7.4e-14 Score=125.95 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=100.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HH-----HHHhccccCCchHHHHHhCCCCCCChH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GE-----FLMRNGALPEERIRAVETGGCPHAAIR 152 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~-----~~~~ig~v~q~~~~~i~~~g~~~~~~~ 152 (283)
+|++++|+||||||||||+++|+|+++|+ |+|.+.+.|+..... .+ .+..+++++|... ..+.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~------~~p~~~v~ 174 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG------TDSAALAY 174 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT------CCHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC------CCHHHHHH
Confidence 68999999999999999999999999987 999999998765331 11 1346899998642 11111111
Q ss_pred HHHHHHHHHHHHccccccCCCcccC------------CchHHHHHHHHHHhcC-Cc--EEEEeCCCCCCchhhcCCcc--
Q 023354 153 EDISINLGPLEELSNLFKADLLLCE------------SGGDNLAANFSRELAD-YI--IYIIDVSGGDKIPRKGGPGI-- 215 (283)
Q Consensus 153 ~~~~~~~~~l~~l~~~~~~d~~i~e------------SgGq~q~~~ia~al~~-~~--l~llDpt~g~~l~~~~~~~i-- 215 (283)
+.+.. ... ..++..+.+ +...+||+.+||+++. |. ++++||+++.+.........
T Consensus 175 ~~v~~---~~~-----~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~ 246 (304)
T 1rj9_A 175 DAVQA---MKA-----RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA 246 (304)
T ss_dssp HHHHH---HHH-----HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHH
T ss_pred HHHHH---HHh-----CCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 11110 110 011221211 3345789999999985 54 78899998865432211000
Q ss_pred cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354 216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 216 ~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~ 265 (283)
.-...|+++|.+....-|....+... .+.|+.++. .|+++++
T Consensus 247 ~~~t~iivTh~d~~a~gg~~l~i~~~------~~~pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 247 VGLTGVIVTKLDGTAKGGVLIPIVRT------LKVPIKFVG--VGEGPDD 288 (304)
T ss_dssp HCCSEEEEECTTSSCCCTTHHHHHHH------HCCCEEEEE--CSSSTTC
T ss_pred cCCcEEEEECCcccccccHHHHHHHH------HCCCeEEEe--CCCChhh
Confidence 12468999999876544443322211 357888876 5666554
No 73
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.5e-16 Score=151.26 Aligned_cols=152 Identities=16% Similarity=-0.031 Sum_probs=92.7
Q ss_pred cccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-C-c-EEEEeecCCCCCHHHHHHhccccCCchHH--------HH
Q 023354 74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-S-LAAVTNDIFTKEDGEFLMRNGALPEERIR--------AV 141 (283)
Q Consensus 74 ~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g-~-i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------~i 141 (283)
+++|.. +|++++|+||||||||||+|+|+|++.|+ | + |.+++ ++ ++.++++||.... ..
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~--------~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DP--------QQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CT--------TSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Cc--------cCCeeeeccchhhcccccccchh
Confidence 355554 59999999999999999999999999987 8 8 88776 21 3578999997521 00
Q ss_pred --HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHH--hc-CCcE----EEEe--CCCCCCch-
Q 023354 142 --ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRE--LA-DYII----YIID--VSGGDKIP- 208 (283)
Q Consensus 142 --~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~a--l~-~~~l----~llD--pt~g~~l~- 208 (283)
.++....... .....+...++.++.....+ ..+ |+||+||+++|++ |+ +|.+ +|+| |++++|..
T Consensus 201 eni~~~~~~~~~-~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~ 277 (460)
T 2npi_A 201 LPTWGQSLTSGA-TLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENL 277 (460)
T ss_dssp CTTCSCBCBSSC-CSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSC
T ss_pred hhhcccccccCc-chHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhH
Confidence 0111100000 00000111222333222222 223 9999999999999 87 5555 5555 67765432
Q ss_pred -------hhcCCc-----------------ccccCE-----EEEEc-CCcccccCChHHH
Q 023354 209 -------RKGGPG-----------------ITQADL-----LVINK-TDLASAIGADLAV 238 (283)
Q Consensus 209 -------~~~~~~-----------------i~~ad~-----ivi~K-~g~i~~~g~~~e~ 238 (283)
.+.+.+ ..+||+ |++++ .|+++ .+++.+.
T Consensus 278 ~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 278 AELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 111111 146787 88887 89988 7776554
No 74
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.48 E-value=3e-14 Score=130.39 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=108.1
Q ss_pred ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HHHHHhccccCCchHHHHHhCCCCC
Q 023354 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGCPH 148 (283)
Q Consensus 72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~i~~~g~~~ 148 (283)
+.++++. .++.+++|+|+||||||||++.|++.+.+. +++.+++.++.+... ..+......+.+ . .....++.+
T Consensus 46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~--~-~~~~~~~i~ 122 (341)
T 2p67_A 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMND--L-ARAEAAFIR 122 (341)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CT--T-TTCTTEEEE
T ss_pred HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHh--h-ccCCCceee
Confidence 3444554 458999999999999999999999998866 789999998875421 111000000000 0 000001111
Q ss_pred CCh-----HHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEE
Q 023354 149 AAI-----REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVI 223 (283)
Q Consensus 149 ~~~-----~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi 223 (283)
+.. ........+.+..+ ....++..++++.|..+........+|.+++++|++.+..+..........+..+++
T Consensus 123 ~~~~~~~l~g~~~~~~~~~~~~-~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~ 201 (341)
T 2p67_A 123 PVPSSGHLGGASQRARELMLLC-EAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVI 201 (341)
T ss_dssp EECC-----CHHHHHHHHHHHH-HHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEE
T ss_pred cCccccccchhHHHHHHHHHHh-hccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEE
Confidence 000 00111122222221 134678888888885544444445668899999998765432111011245789999
Q ss_pred EcCCcccccCChHHHHhHHHH---hh-cC-----CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 224 NKTDLASAIGADLAVMERDAL---RM-RD-----GGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 224 ~K~g~i~~~g~~~e~~~~~~~---~~-~~-----~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
||.|+.... ......+.+. .. .+ ..+++++|+++|.|+++++++|.....
T Consensus 202 NK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 202 NKDDGDNHT--NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCCCTTCHH--HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ECCCCCChH--HHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999986431 1111111121 12 21 356889999999999999999987654
No 75
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.45 E-value=3.4e-14 Score=121.02 Aligned_cols=186 Identities=29% Similarity=0.386 Sum_probs=111.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL 159 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~ 159 (283)
+..+++|+|++|||||||++.|++......++.++..++....+....+..+. ....+..++. ++.......
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~--- 100 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGI----KAEAISTGKE-CHLDAHMIY--- 100 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTC----EEEECCCTTC-SSCCHHHHH---
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCC----cEEEecCCce-eecccHHHH---
Confidence 45689999999999999999999876444577777777754323222222121 0011222222 222111111
Q ss_pred HHHHHccccccCCCcccCCchH-HHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHH
Q 023354 160 GPLEELSNLFKADLLLCESGGD-NLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV 238 (283)
Q Consensus 160 ~~l~~l~~~~~~d~~i~eSgGq-~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~ 238 (283)
+.+. ....++.+++|+.|+ ..+..+.. -.+..++++|++.+..........+..+..+++||+|+........+.
T Consensus 101 ~~~~---~~~~~d~iiidt~G~~~~~~~~~~-~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 101 HRLK---KFSDCDLLLIENVGNLICPVDFDL-GENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp TTGG---GGTTCSEEEEEEEEBSSGGGGCCC-SCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHHH
T ss_pred HHHH---hcCCCCEEEEeCCCCCCCCchhcc-ccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHHH
Confidence 1111 234578888887774 10000000 123678999987765332222223456789999999987542234455
Q ss_pred HhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 239 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 239 ~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
+.+.+....+..+++.+|+++|.|+++++++|...+..+
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 555555556678899999999999999999998876544
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.43 E-value=2.9e-15 Score=140.29 Aligned_cols=168 Identities=10% Similarity=0.036 Sum_probs=99.8
Q ss_pred CcccccccC-CCc--------------------EEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354 71 PILSRNFNE-RAF--------------------TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM 128 (283)
Q Consensus 71 ~~~~~~~~~-~g~--------------------~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~ 128 (283)
++++++|.. +|+ +++|+||||||||||+|+|+|+++|+ |.|.+.+.+..
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t--------- 108 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--------- 108 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------------
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---------
Confidence 577788864 488 99999999999999999999999987 98877664431
Q ss_pred hccccCCchH----HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCch--HHHHHHHHHHhcC---------
Q 023354 129 RNGALPEERI----RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG--DNLAANFSRELAD--------- 193 (283)
Q Consensus 129 ~ig~v~q~~~----~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgG--q~q~~~ia~al~~--------- 193 (283)
+.++++|.+. .+.++.++.... ..+.+.++.+..... +..+.-|+| |+|++.+|++++.
T Consensus 109 ~~~~v~q~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~~L~~~-~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~ 182 (413)
T 1tq4_A 109 MERHPYKHPNIPNVVFWDLPGIGSTN-----FPPDTYLEKMKFYEY-DFFIIISATRFKKNDIDIAKAISMMKKEFYFVR 182 (413)
T ss_dssp CCCEEEECSSCTTEEEEECCCGGGSS-----CCHHHHHHHTTGGGC-SEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred eeEEeccccccCCeeehHhhcccchH-----HHHHHHHHHcCCCcc-CCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence 1266776531 111222221110 123345666654433 332335888 9999999999864
Q ss_pred --CcEEEEe-CCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHHHhHHH----Hhh-cCCCCeEEEEe--ccCCCH
Q 023354 194 --YIIYIID-VSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDA----LRM-RDGGPFIFAQV--KHGLGV 263 (283)
Q Consensus 194 --~~l~llD-pt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~----~~~-~~~~~i~~isa--~~g~gi 263 (283)
+.++++| |+++.|...+. ...+.+.+.. .+. .....++.+|+ ..+.|+
T Consensus 183 tkpdlllLDEPtsgLD~~~~~----------------------~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~ 240 (413)
T 1tq4_A 183 TKVDSDITNEADGEPQTFDKE----------------------KVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 240 (413)
T ss_dssp CCHHHHHHHHHTTCCTTCCHH----------------------HHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTH
T ss_pred ecCcccccCcccccCCHHHHH----------------------HHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCH
Confidence 2233344 66665543211 0111122111 121 23346788888 666679
Q ss_pred HHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWE 275 (283)
Q Consensus 264 ~~l~~~l~~~~~ 275 (283)
+++.+.+...++
T Consensus 241 e~L~d~I~~~Lp 252 (413)
T 1tq4_A 241 PVLMDKLISDLP 252 (413)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhCc
Confidence 999888876653
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.40 E-value=3.2e-14 Score=128.75 Aligned_cols=135 Identities=16% Similarity=0.069 Sum_probs=81.7
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C--cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHH
Q 023354 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED 154 (283)
Q Consensus 78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~ 154 (283)
..+|++++|+||||||||||+++|+|+++|. | .+.++..+..-... ..+..+++.. .-+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~--------~~g~~~~~---d 154 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMH--------RKGFPESY---N 154 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTT--------CTTSGGGB---C
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHH--------hcCCChHH---H
Confidence 3569999999999999999999999999875 4 45555544332222 2223332210 01222211 1
Q ss_pred HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhhcCCcccccCEEEEEcCC
Q 023354 155 ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGPGITQADLLVINKTD 227 (283)
Q Consensus 155 ~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~~~~~i~~ad~ivi~K~g 227 (283)
...+.+.|+.+. ....+..+.+ |+||+||+.+|++++ ++.|+|+| |+...+... .......|..|+...+
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--~~l~~~~D~~I~V~a~ 227 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--LMVSDLFDFSLYVDAR 227 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--CCGGGGCSEEEEEEEC
T ss_pred HHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--HHHHHhcCcEEEEECC
Confidence 223345566654 2333344445 999999999998887 48888888 777643211 1122456777776554
No 78
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.40 E-value=9.6e-14 Score=129.66 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.6
Q ss_pred CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
.+.+++|.-. | +++|+|+|||||||||++|++++.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 5667777755 7 999999999999999999977664
No 79
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.38 E-value=5.8e-13 Score=126.69 Aligned_cols=171 Identities=16% Similarity=0.188 Sum_probs=100.8
Q ss_pred ccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC------HHHHHHhccccCCchHHHHHhC
Q 023354 73 LSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE------DGEFLMRNGALPEERIRAVETG 144 (283)
Q Consensus 73 ~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~------~~~~~~~ig~v~q~~~~~i~~~ 144 (283)
.+++|.. +|++++|+|+||||||||+++|+|+++++ |+|.+.+.+..... ....++.++|++|...
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~------ 357 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG------ 357 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT------
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC------
Confidence 3556654 59999999999999999999999999887 89999888765421 1113556899988631
Q ss_pred CCCCCChHHHHHHHHHHHHHccccccCCCcccCCchH-----------HHHHHHHHHhc--C--CcEEEEeCCCCCCchh
Q 023354 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD-----------NLAANFSRELA--D--YIIYIIDVSGGDKIPR 209 (283)
Q Consensus 145 g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq-----------~q~~~ia~al~--~--~~l~llDpt~g~~l~~ 209 (283)
..+... +.+.+... ....+|.+++++.|. .+++.+++++. . .+++++|+++|.+...
T Consensus 358 ~~p~~t-------V~e~l~~a-~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~ 429 (503)
T 2yhs_A 358 ADSASV-------IFDAIQAA-KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS 429 (503)
T ss_dssp CCHHHH-------HHHHHHHH-HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH
T ss_pred cCHHHH-------HHHHHHHH-HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH
Confidence 111011 11112111 224567777775542 23444555442 1 3588999998843221
Q ss_pred ---hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354 210 ---KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI 266 (283)
Q Consensus 210 ---~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l 266 (283)
.+...+ -.+.+|++|.|....-|....++. ..+.|+.++. +|+++++|
T Consensus 430 ~ak~f~~~~-~itgvIlTKLD~takgG~~lsi~~------~~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 430 QAKLFHEAV-GLTGITLTKLDGTAKGGVIFSVAD------QFGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp HHHHHHHHT-CCSEEEEECGGGCSCCTHHHHHHH------HHCCCEEEEE--CSSSGGGE
T ss_pred HHHHHHhhc-CCCEEEEEcCCCcccccHHHHHHH------HHCCCEEEEe--cCCChhhc
Confidence 111111 135799999886433333222221 1257888765 67777543
No 80
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.36 E-value=1.2e-12 Score=119.27 Aligned_cols=166 Identities=21% Similarity=0.377 Sum_probs=98.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH----HHHhcc--ccCCchHHHHHhCCCCCCCh
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNG--ALPEERIRAVETGGCPHAAI 151 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~----~~~~ig--~v~q~~~~~i~~~g~~~~~~ 151 (283)
.+|++++|+||||||||||+++|+|+++|+ |+|.+.+.|+......+ +++++| +++|.. +..+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~------~~~p~~~v 200 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY------GADPAAVA 200 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT------TCCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc------cCCHHHHH
Confidence 469999999999999999999999999987 89999999987654332 234455 566542 11111111
Q ss_pred HHHHHHHHHHHHHccccccCCCcccCCch--------HHHHHHHHHHhc-CCcEEEEeCCCCCCchhhcCCc--ccccCE
Q 023354 152 REDISINLGPLEELSNLFKADLLLCESGG--------DNLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPG--ITQADL 220 (283)
Q Consensus 152 ~~~~~~~~~~l~~l~~~~~~d~~i~eSgG--------q~q~~~ia~al~-~~~l~llDpt~g~~l~~~~~~~--i~~ad~ 220 (283)
.+. +.. .....++.++.++.| ..+...+++++. ++.++++|++++.+........ ..-.+.
T Consensus 201 ~e~-------l~~-~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~ 272 (328)
T 3e70_C 201 YDA-------IQH-AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDG 272 (328)
T ss_dssp HHH-------HHH-HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCE
T ss_pred HHH-------HHH-HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCE
Confidence 111 111 111234444444222 123344667766 6889999988876443221100 012468
Q ss_pred EEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354 221 LVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI 266 (283)
Q Consensus 221 ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l 266 (283)
|+++|.|.-...|...... . ..+.|+.+++ +|++++++
T Consensus 273 iilTKlD~~a~~G~~l~~~----~--~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 273 IILTKLDADARGGAALSIS----Y--VIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp EEEECGGGCSCCHHHHHHH----H--HHTCCEEEEE--CSSSTTCE
T ss_pred EEEeCcCCccchhHHHHHH----H--HHCCCEEEEe--CCCCcccc
Confidence 9999988743323222111 1 1367898887 77777543
No 81
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.36 E-value=9.2e-14 Score=114.72 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=63.4
Q ss_pred cccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHH
Q 023354 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRE 153 (283)
Q Consensus 75 ~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~ 153 (283)
++|. .+|++++|+||||||||||++++.+- ...+ .. ..+ .|+++|++...... + ...+
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~-----~~~~-~~-------d~~---~g~~~~~~~~~~~~-~----~~~~ 60 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKP-----TEVI-SS-------DFC---RGLMSDDENDQTVT-G----AAFD 60 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCG-----GGEE-EH-------HHH---HHHHCSSTTCGGGH-H----HHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccC-----CeEE-cc-------HHH---HHHhcCcccchhhH-H----HHHH
Confidence 4555 46999999999999999999986542 1111 11 111 25566653110000 0 0011
Q ss_pred HHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcC-CcEEEEe-CCCCCCch
Q 023354 154 DISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELAD-YIIYIID-VSGGDKIP 208 (283)
Q Consensus 154 ~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~ 208 (283)
............+.....+.....|+|++||+++|++++. |.++++| |+++.+..
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 61 VLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER 117 (171)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence 1111111111222222223333349999999999999984 8888888 88876544
No 82
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.35 E-value=2.5e-13 Score=113.13 Aligned_cols=105 Identities=18% Similarity=0.009 Sum_probs=60.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHHHH
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l 162 (283)
+++|+||||||||||+++|+|++. +.+.+.+..........+.+||++|+.. +.... .. . +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~~-~-------~ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-FS-S-------K 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETT------CCEEE-EE-E-------T
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCc------HHHHH-HH-h-------h
Confidence 689999999999999999999885 3333333211111134567899988641 10000 00 0 0
Q ss_pred HHccccccCCCcccC-CchHHHHHHHHHH-----hc-CCcEEEEe---CCCCCCc
Q 023354 163 EELSNLFKADLLLCE-SGGDNLAANFSRE-----LA-DYIIYIID---VSGGDKI 207 (283)
Q Consensus 163 ~~l~~~~~~d~~i~e-SgGq~q~~~ia~a-----l~-~~~l~llD---pt~g~~l 207 (283)
.+......+..+.+ |+||+||+++|++ ++ +|.++++| |+++.+.
T Consensus 63 -~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~ 116 (178)
T 1ye8_A 63 -FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSK 116 (178)
T ss_dssp -TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCH
T ss_pred -cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCH
Confidence 00000122334444 9999999999996 66 57666666 6776653
No 83
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.34 E-value=7.1e-13 Score=113.17 Aligned_cols=185 Identities=32% Similarity=0.452 Sum_probs=108.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHh-CCCCCCChHHHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET-GGCPHAAIREDISIN 158 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~-~g~~~~~~~~~~~~~ 158 (283)
+..+++|+|++|||||||++.++........+.+++.++....+.......+. . .+.. .++.++....+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~----~--~~~~~~~~~~~l~~~~~--- 107 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA----K--VVPLNTGKECHLDAHLV--- 107 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTC----E--EEEEECTTCSSCCHHHH---
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCC----c--EEEecCCceEeccHHHH---
Confidence 45789999999999999999999875544567777777753223222222111 0 1111 133333222222
Q ss_pred HHHHHHccccccCCCcccCCchH-HHHHHHHHHhc-CCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChH
Q 023354 159 LGPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADL 236 (283)
Q Consensus 159 ~~~l~~l~~~~~~d~~i~eSgGq-~q~~~ia~al~-~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~ 236 (283)
.+.+..+. ...++.++.++.|. ..+..+ ... ...+.++|+..+...+......+..++.+++||+|+........
T Consensus 108 ~~~~~~l~-~~~~d~~~id~~g~i~~~~s~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~ 184 (226)
T 2hf9_A 108 GHALEDLN-LDEIDLLFIENVGNLICPADF--DLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADI 184 (226)
T ss_dssp HHHHTTSC-GGGCSEEEEECCSCSSGGGGC--CCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCH
T ss_pred HHHHHHHh-cCCCCEEEEeCCCCccCcchh--hhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHHHH
Confidence 23333332 33567777776552 000000 011 23466777544433332222235678899999999875422234
Q ss_pred HHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 237 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 237 e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
+.+.+.+....+..+++.+|+++|.|++++++++...+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 4444555555567889999999999999999999876653
No 84
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.34 E-value=4.7e-14 Score=127.02 Aligned_cols=186 Identities=18% Similarity=0.112 Sum_probs=77.7
Q ss_pred CCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhc-ccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-----HHHH
Q 023354 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF-LRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----RAVE 142 (283)
Q Consensus 70 ~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~-~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----~~i~ 142 (283)
.++++.+| .++|+|+||||||||+++|+|. +.|+ | +.+.+.++.... ..+.+++++|... .+++
T Consensus 12 ~~l~~~~~-----~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~---~~~~~~~~~q~~~~~~~ltv~D 82 (301)
T 2qnr_A 12 SVKKGFEF-----TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV---QIEASTVEIEERGVKLRLTVVD 82 (301)
T ss_dssp ------CE-----EEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEE
T ss_pred EEEcCCCE-----EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc---eEeeEEEEecCCCcccCcchhh
Confidence 35555554 5699999999999999999997 6665 6 665554443211 1245677776432 2233
Q ss_pred hCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcCCcEEEEeCCCC-CCchhh-cCCcc--c
Q 023354 143 TGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVSGG-DKIPRK-GGPGI--T 216 (283)
Q Consensus 143 ~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~~~l~llDpt~g-~~l~~~-~~~~i--~ 216 (283)
+.|...... .+........+.. ..+..+.+ |+|++|++.+|++++ ++++++|+.+ .+.... ....+ .
T Consensus 83 t~g~~~~~~~~e~~~~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~--ll~ldePt~~~Ld~~~~~~l~~l~~~ 155 (301)
T 2qnr_A 83 TPGYGDAINCRDCFKTIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC--CFYFISPFGHGLKPLDVAFMKAIHNK 155 (301)
T ss_dssp EC-----------CTTHHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE--EEEEECSSSSSCCHHHHHHHHHHTTT
T ss_pred hhhhhhhcCcHHHHHHHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh--eeeeecCcccCCCHHHHHHHHHHHhc
Confidence 333311000 0000111111111 11222333 999999887776654 5556668763 443221 00000 1
Q ss_pred ccCEEEEEcCCcccccCChHHHHhHHHHh--hcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354 217 QADLLVINKTDLASAIGADLAVMERDALR--MRDGGPFIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~--~~~~~~i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
..-.+|++|.|.+.. .....+.+.+.+ ...+.+++.+|++++ ++++++.++....
T Consensus 156 ~~iilV~~K~Dl~~~--~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 156 VNIVPVIAKADTLTL--KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp SCEEEEECCGGGSCH--HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred CCEEEEEEeCCCCCH--HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 234789999998643 112222222211 123578999999999 9999988887655
No 85
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.28 E-value=3.2e-13 Score=115.84 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=44.7
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCH-HHHHHhccccCCchHHH
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRA 140 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~ 140 (283)
.+++++|.. +|++++|+||||||||||+++|+|++ | |.+.+ +.++.+..+ ...+..++|++|++..+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIF 80 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE-eecccCCCCCcccccCCeEEECCHHHH
Confidence 567888875 49999999999999999999999988 6 88888 665543221 12345789999987544
No 86
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.27 E-value=4.8e-13 Score=121.99 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=63.7
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCC
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~ 148 (283)
.+..+++.. +|++++|+||||||||||+++|+|+++|+ |.|.+.+.+...... .++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~--~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKH--HKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSS--CSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccccc--chhEEEEEe--------------
Confidence 456677764 49999999999999999999999999987 888887643211100 001111110
Q ss_pred CChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354 149 AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSG 203 (283)
Q Consensus 149 ~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~ 203 (283)
.+||+|++.++++|. +|.++++| |++
T Consensus 224 -----------------------------ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 224 -----------------------------GGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp -----------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred -----------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 178999999999998 58888887 766
No 87
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.23 E-value=1.8e-12 Score=117.55 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=95.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc--------cCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCC
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL--------RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA 150 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~--------~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~ 150 (283)
+-++++|+|+||||||||||.|+|+. .++ |.|.+++..+..... .+ ....+||.||+
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~-------~~-------~el~~gCicc~ 68 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRAT-------QI-------KTLTNGCICCS 68 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSC-------EE-------EEETTSCEEEC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCC-------CE-------EEECCCceEEc
Confidence 35789999999999999999999986 445 666666655532111 00 11257999998
Q ss_pred hHHHHHHHHHHH-HHccccc-cCCCcccCCchHHHHHHHHHH-----------hcCCcEEEEeCCCCCCchh---hcCCc
Q 023354 151 IREDISINLGPL-EELSNLF-KADLLLCESGGDNLAANFSRE-----------LADYIIYIIDVSGGDKIPR---KGGPG 214 (283)
Q Consensus 151 ~~~~~~~~~~~l-~~l~~~~-~~d~~i~eSgGq~q~~~ia~a-----------l~~~~l~llDpt~g~~l~~---~~~~~ 214 (283)
.+.++......+ ..+.... .++..+.|+.|......+++. -++..+.++|.....+... ....+
T Consensus 69 ~~~~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q 148 (318)
T 1nij_A 69 RSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQ 148 (318)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHH
T ss_pred ccHHHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHH
Confidence 766554333222 1111111 358888885553211111111 1245677888765422111 11234
Q ss_pred ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEE
Q 023354 215 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 256 (283)
Q Consensus 215 i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~is 256 (283)
...||+++++|.+.+.+ + +.+.+.+...++++.++.+|
T Consensus 149 ~~~ad~ill~k~dl~de---~-~~l~~~l~~l~~~~~ii~~s 186 (318)
T 1nij_A 149 VGYADRILLTKTDVAGE---A-EKLHERLARINARAPVYTVT 186 (318)
T ss_dssp HHTCSEEEEECTTTCSC---T-HHHHHHHHHHCSSSCEEECC
T ss_pred HHhCCEEEEECcccCCH---H-HHHHHHHHHhCCCCeEEEec
Confidence 56899999999998844 2 55556666677777777665
No 88
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=1.7e-12 Score=121.82 Aligned_cols=207 Identities=14% Similarity=0.154 Sum_probs=106.1
Q ss_pred CccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCC-CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHh
Q 023354 31 DSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAP-PILSRNFNER-AFTVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g 103 (283)
...+.-+..+..+......+..|.....+.+.. +....++ ...++++.-+ ++.++|+|+|||||||||++|++
T Consensus 100 ~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg 179 (416)
T 1udx_A 100 GELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTR 179 (416)
T ss_dssp CCEEEEECSTTCEEEEECCCCCCCCGGGGCCSSCSSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred CcEEeeccCCCceEEEecCCCCCcccceeecccccCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence 345666777777777777776555443333322 1111112 2345666644 89999999999999999999999
Q ss_pred cccCCCcEEEEeecCCCCCHHHHHHhccccCCch---HHHHHhCCCCCC-----ChHHHHHHHHHHHHHcc-ccccC---
Q 023354 104 FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER---IRAVETGGCPHA-----AIREDISINLGPLEELS-NLFKA--- 171 (283)
Q Consensus 104 ~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~---~~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~-~~~~~--- 171 (283)
..+ .+.+.++.+.. ..+|++++.. ..+.++.+.... .+...+ ...++... .....
T Consensus 180 ~~~-----~i~~~~ftTl~-----p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f---l~~~era~~lL~vvDls 246 (416)
T 1udx_A 180 AHP-----KIAPYPFTTLS-----PNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF---LRHIARTRVLLYVLDAA 246 (416)
T ss_dssp SCC-----EECCCTTCSSC-----CEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH---HHHHTSSSEEEEEEETT
T ss_pred CCc-----cccCcccceec-----ceeeEEEecCcceEEEEeccccccchhhhhhhhHHH---HHHHHHHHhhhEEeCCc
Confidence 732 12222222221 1344444321 112233332110 000000 00000000 00000
Q ss_pred CCcccC-CchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC
Q 023354 172 DLLLCE-SGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGG 250 (283)
Q Consensus 172 d~~i~e-SgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~ 250 (283)
+.++.+ |.|++|++.++++++ ..+..+++||.|.... ...+.+.+.+. ..+.
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~-----------------------~~P~ILVlNKlDl~~~--~~~~~l~~~l~--~~g~ 299 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALL-----------------------RRPSLVALNKVDLLEE--EAVKALADALA--REGL 299 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHH-----------------------HSCEEEEEECCTTSCH--HHHHHHHHHHH--TTTS
T ss_pred cCCHHHHHHHHHHHHHHhHHhh-----------------------cCCEEEEEECCChhhH--HHHHHHHHHHH--hcCC
Confidence 111111 455555555544433 2334666688886543 12222222221 1356
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 251 PFIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 251 ~i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
+++.+||+++.|+++++++|.+.+...
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 899999999999999999999887643
No 89
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.22 E-value=3.1e-11 Score=111.40 Aligned_cols=59 Identities=14% Similarity=0.004 Sum_probs=42.6
Q ss_pred CcccC-CchHHHHHHHHHHhc-------CCcEEEEe-CCCCCCchhh------------cCCc----------ccccCEE
Q 023354 173 LLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKIPRK------------GGPG----------ITQADLL 221 (283)
Q Consensus 173 ~~i~e-SgGq~q~~~ia~al~-------~~~l~llD-pt~g~~l~~~------------~~~~----------i~~ad~i 221 (283)
..+.+ ||||+||++||++++ +|.++++| |+++.|.... .+.+ ...||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 34445 999999999999987 68888888 9999763211 1112 2668899
Q ss_pred EEEcCCcccc
Q 023354 222 VINKTDLASA 231 (283)
Q Consensus 222 vi~K~g~i~~ 231 (283)
++++.|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9998888764
No 90
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.18 E-value=2.2e-11 Score=115.00 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=57.5
Q ss_pred HhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHh---hcCCCCeEEEEeccCCC
Q 023354 190 ELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 190 al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~---~~~~~~i~~isa~~g~g 262 (283)
..++.+++++|++.+....... ......+-.+++||+|++.......+.+.+.+.. ...+.|++++||++|.|
T Consensus 262 ~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 341 (439)
T 1mky_A 262 EKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWN 341 (439)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBS
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCC
Confidence 4467888999988764322110 0011345689999999875432223333333322 23568999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 023354 263 VEEIVNHILQAWEAS 277 (283)
Q Consensus 263 i~~l~~~l~~~~~~~ 277 (283)
++++++.+...++.+
T Consensus 342 v~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 342 IDRMIDAMNLAYASY 356 (439)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887654
No 91
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.16 E-value=3.8e-11 Score=108.83 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=27.7
Q ss_pred CCcccC-CchHHHHHHHHHHhc-----CCcEEEEe-CCCCCCc
Q 023354 172 DLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKI 207 (283)
Q Consensus 172 d~~i~e-SgGq~q~~~ia~al~-----~~~l~llD-pt~g~~l 207 (283)
+..+.+ |+||+|+++||++++ ++.++++| |+++.+.
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~ 256 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD 256 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCH
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCH
Confidence 344445 999999999999985 46677776 9998763
No 92
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.16 E-value=2.8e-13 Score=112.25 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=63.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCC----CcEEEEeecCCCCC---HHHHH-Hhcc----ccCCchHHHHHhCCCCCC
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKE---DGEFL-MRNG----ALPEERIRAVETGGCPHA 149 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~----g~i~i~~~d~~~~~---~~~~~-~~ig----~v~q~~~~~i~~~g~~~~ 149 (283)
++++|+|++|||||||+++|+++++++ |.|.+++.++...+ ...++ +.+| +++|+...++.- +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~-~---- 77 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR-V---- 77 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE-C----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec-C----
Confidence 589999999999999999999999864 67888777755443 23444 4678 677765322100 0
Q ss_pred ChHHHHHHHHHHHHH-ccccccCCCcccC--CchHHHHHHHHHHhcC
Q 023354 150 AIREDISINLGPLEE-LSNLFKADLLLCE--SGGDNLAANFSRELAD 193 (283)
Q Consensus 150 ~~~~~~~~~~~~l~~-l~~~~~~d~~i~e--SgGq~q~~~ia~al~~ 193 (283)
. .+......+.+.. + . .+|..+.| |+||+||+++||++..
T Consensus 78 ~-~~~~a~l~~~i~~~l--~-g~dt~i~EglSgGq~qri~lARall~ 120 (171)
T 2f1r_A 78 S-EEEGNDLDWIYERYL--S-DYDLVITEGFSKAGKDRIVVVKKPEE 120 (171)
T ss_dssp C-HHHHTCHHHHHHHHT--T-TCSEEEEESCGGGCCCEEEECSSGGG
T ss_pred C-hhhhhCHHHHHHhhC--C-CCCEEEECCcCCCCCcEEEEEecccC
Confidence 0 1100011223333 2 2 68888888 9999999999998863
No 93
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.14 E-value=6.9e-11 Score=106.50 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=90.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccC---CchHHHHHhCCCCCCChHHHHHH
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP---EERIRAVETGGCPHAAIREDISI 157 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~---q~~~~~i~~~g~~~~~~~~~~~~ 157 (283)
--+|+|+|++|||||||+|.|+|.-. .+......++.. ...+.+. .....+++++|.........+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~-----~i~s~~~~tT~~----~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~- 79 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKV-----SIISPKAGTTRM----RVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLG- 79 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCC-----SCCCSSSCCCCS----CEEEEEEETTTEEEEEEECCCCCCCCTTCHHH-
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCc-----cccCCCCCceee----EEEEEEecCCCCeEEEEECcCCCccccchhHH-
Confidence 35899999999999999999998521 111112222111 0111111 1112345566653211000000
Q ss_pred HHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhh-----cCCcccccCEEEEEcCCccccc
Q 023354 158 NLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRK-----GGPGITQADLLVINKTDLASAI 232 (283)
Q Consensus 158 ~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~-----~~~~i~~ad~ivi~K~g~i~~~ 232 (283)
+.+ ...+..+..-+|.+++++|++.+...... .......+..+++||+|++...
T Consensus 80 --~~~-------------------~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~ 138 (308)
T 3iev_A 80 --HSM-------------------VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPA 138 (308)
T ss_dssp --HHH-------------------HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSG
T ss_pred --HHH-------------------HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCH
Confidence 000 11111222345789999998875432111 1111245678999999987321
Q ss_pred CChHHHHhHHHHhhc-CCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 233 GADLAVMERDALRMR-DGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 233 g~~~e~~~~~~~~~~-~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.........+.+.. ...+++++||++|.|++++++++...++
T Consensus 139 -~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 139 -KNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp -GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 22222333444444 4678999999999999999999988764
No 94
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.11 E-value=2.3e-11 Score=111.79 Aligned_cols=115 Identities=15% Similarity=-0.013 Sum_probs=67.0
Q ss_pred cccccccCCCcEEEEEcCCCCcHHHHHHHHHhccc-CC-CcEEEE-eecCCCCCHHHHHHhccccCCchH-----HHHHh
Q 023354 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAV-TNDIFTKEDGEFLMRNGALPEERI-----RAVET 143 (283)
Q Consensus 72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~-g~i~i~-~~d~~~~~~~~~~~~ig~v~q~~~-----~~i~~ 143 (283)
+..+.+..+|++++|+||||||||||+|+|+|++. +. |.|.+. +....+ .....+++++|... .+..+
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHh
Confidence 44555556899999999999999999999999998 87 998876 433221 12345788887642 12222
Q ss_pred CCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc
Q 023354 144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA 192 (283)
Q Consensus 144 ~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~ 192 (283)
+ .......+....+.+.++.++.....+..... | |++|++++|++++
T Consensus 282 ~-l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 282 G-LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp C-CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred h-hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 2 11111111112233445555555555555554 8 9999999998764
No 95
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.10 E-value=1.3e-10 Score=94.62 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=52.7
Q ss_pred CCcEEEEeCCCCCC---chhhc-------C--CcccccCEEEEEcCCcccccCC-hHHHHhHHHHhhcCCCCeEEEEecc
Q 023354 193 DYIIYIIDVSGGDK---IPRKG-------G--PGITQADLLVINKTDLASAIGA-DLAVMERDALRMRDGGPFIFAQVKH 259 (283)
Q Consensus 193 ~~~l~llDpt~g~~---l~~~~-------~--~~i~~ad~ivi~K~g~i~~~g~-~~e~~~~~~~~~~~~~~i~~isa~~ 259 (283)
+..++++|++.... +.... . ......-.+++||+|+...... ..+... .+.......+++++|+++
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~-~~~~~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 83 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ-ELAKSLGDIPLFLTSAKN 161 (182)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH-HHHHHTTSCCEEEEBTTT
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHH-HHHHhcCCCeEEEEecCC
Confidence 57899999876421 11100 0 0012345899999998644221 222222 233335677899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAWEA 276 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~~ 276 (283)
|.|+++++++|......
T Consensus 162 ~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 162 AINVDTAFEEIARSALQ 178 (182)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999876643
No 96
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.07 E-value=9.8e-12 Score=108.17 Aligned_cols=117 Identities=10% Similarity=0.075 Sum_probs=57.7
Q ss_pred CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchH-------H
Q 023354 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (283)
Q Consensus 68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~ 139 (283)
...++++++|..+ |++++|+||||||||||+++|+|++ |.+.+. ..++.+++++|+.. .
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 3457889999855 9999999999999999999999976 222111 11233444444321 1
Q ss_pred HHH--hCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354 140 AVE--TGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (283)
Q Consensus 140 ~i~--~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD 200 (283)
.+. .+....... ..+.....+.|+.+ ....+..+.+ |+|++||+.+ ++++ ++.++|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilD 140 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFE 140 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEE
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEe
Confidence 111 111111000 00112223444443 2334444555 9999998866 3444 57788888
No 97
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=2.4e-11 Score=114.01 Aligned_cols=192 Identities=13% Similarity=-0.004 Sum_probs=77.8
Q ss_pred ccccccCCCCCCCCCCCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C--cEEEEeecCCCCCHHHHHHhc
Q 023354 54 HSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRN 130 (283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g--~i~i~~~d~~~~~~~~~~~~i 130 (283)
.+.+.+....|.. ..++.+++|. ++|+|+||||||||+++|+|...+. + .+.+.. ..+. .+..+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~--~~t~----~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVYR--KSVKRGFEFT-----LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI--KKTV----QVEQS 77 (418)
T ss_dssp ----CCCCCCTTT--TTCC-CCCEE-----EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CC----EEEEE
T ss_pred cEEEEecceeECC--EEEecCCCEE-----EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCC--ccce----eeeeE
Confidence 4555566666542 3567777764 5999999999999999999987642 3 211110 0000 12346
Q ss_pred cccCCchHH-----HHHhCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCc---EEEEe
Q 023354 131 GALPEERIR-----AVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYI---IYIID 200 (283)
Q Consensus 131 g~v~q~~~~-----~i~~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~---l~llD 200 (283)
++++|.... ++++.|+..... ......+.+.+... + +.++++++.++++++ ++. ++++|
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~-----~------~~~l~qr~~IaRal~~d~~~~vlL~ld 146 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSK-----F------EDYLNAESRVNRRQMPDNRVQCCLYFI 146 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHHHHHHHHHH-----H------HHHTTTSCC-CCCCCCCC-CCEEEEEC
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHH-----H------HHHHHHHHHHHHHhccCCCeeEEEEEe
Confidence 777664321 222333321100 00001111111110 0 123345667777776 443 44444
Q ss_pred -CC-CCCCchh-----hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhh--cCCCCeEEEEeccCCCHHHHHHHHH
Q 023354 201 -VS-GGDKIPR-----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVKHGLGVEEIVNHIL 271 (283)
Q Consensus 201 -pt-~g~~l~~-----~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~--~~~~~i~~isa~~g~gi~~l~~~l~ 271 (283)
|+ .+.+... .... ...-++|+||+|++.. .....+...+.+. ..+.+++.+|++++.++++++..+.
T Consensus 147 ePt~~~L~~~d~~~lk~L~~--~v~iIlVinK~Dll~~--~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~ 222 (418)
T 2qag_C 147 APSGHGLKPLDIEFMKRLHE--KVNIIPLIAKADTLTP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIK 222 (418)
T ss_dssp CC-CCSCCHHHHHHHHHHTT--TSEEEEEEESTTSSCH--HHHHHHHHHHHHHHHHHTCCCCCCC---------------
T ss_pred cCcccCCCHHHHHHHHHHhc--cCcEEEEEEcccCccH--HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHH
Confidence 87 4543221 1111 3345899999998753 1222222222221 1367888999999999888776666
Q ss_pred HH
Q 023354 272 QA 273 (283)
Q Consensus 272 ~~ 273 (283)
..
T Consensus 223 ~~ 224 (418)
T 2qag_C 223 DR 224 (418)
T ss_dssp --
T ss_pred hh
Confidence 54
No 98
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.01 E-value=3e-10 Score=112.54 Aligned_cols=123 Identities=17% Similarity=0.101 Sum_probs=72.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccC---CCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHH
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDI 155 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~ 155 (283)
.++.+++|+|++|||||||+++|++...+ .|+| ..+..+..+.+.++.+.+.+.++..... .
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~--~------------ 71 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLL--F------------ 71 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEE--E------------
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEe--e------------
Confidence 45889999999999999999999986543 3666 3444444555666666777766542100 0
Q ss_pred HHHHHHHHHccccccCCCcccCCchHHH---HHHHHHHhcCCcEEEEeCCCCCCchhhcC----CcccccCEEEEEcCCc
Q 023354 156 SINLGPLEELSNLFKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPRKGG----PGITQADLLVINKTDL 228 (283)
Q Consensus 156 ~~~~~~l~~l~~~~~~d~~i~eSgGq~q---~~~ia~al~~~~l~llDpt~g~~l~~~~~----~~i~~ad~ivi~K~g~ 228 (283)
......++++.|+.. .+.-+...++..++++|++.+.+.+.... ......-.+++||.|+
T Consensus 72 -------------~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 72 -------------RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp -------------TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred -------------CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCch
Confidence 001111222333321 12222334688899999888754322110 0113445788999998
Q ss_pred c
Q 023354 229 A 229 (283)
Q Consensus 229 i 229 (283)
.
T Consensus 139 ~ 139 (665)
T 2dy1_A 139 G 139 (665)
T ss_dssp C
T ss_pred h
Confidence 6
No 99
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.01 E-value=1.5e-09 Score=91.72 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=61.8
Q ss_pred CCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhcCCc------ccccCEEEEEcCCcccccCChHHHH
Q 023354 172 DLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKGGPG------ITQADLLVINKTDLASAIGADLAVM 239 (283)
Q Consensus 172 d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~~~~------i~~ad~ivi~K~g~i~~~g~~~e~~ 239 (283)
...++++.|+.....+.... ++.+|+++|++....+ ....... -...-.||+||+|+........+..
T Consensus 85 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~ 164 (217)
T 2f7s_A 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA 164 (217)
T ss_dssp EEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH
T ss_pred EEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHH
Confidence 34455566655443333333 3688999998764221 1111000 1234489999999875432223333
Q ss_pred hHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 240 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 240 ~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
...... .+.+++++|++++.|+++++++|...+..
T Consensus 165 ~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 165 RELADK--YGIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp HHHHHH--TTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHH--CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 332222 35689999999999999999999876543
No 100
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.01 E-value=1.1e-09 Score=87.89 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=52.6
Q ss_pred cCCcEEEEeCCCCCCc---hhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI---PRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+....+ ... ....-..+-.+|+||+|+........+...... ...+.+++++|+++|.|
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~g 150 (166)
T 3q72_A 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA--VVFDCKFIETSAALHHN 150 (166)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH--HHTTCEEEECBGGGTBS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH--HHhCCcEEEeccCCCCC
Confidence 4678899998754211 110 000112345899999998765333333332222 22457899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWEA 276 (283)
Q Consensus 263 i~~l~~~l~~~~~~ 276 (283)
+++++++|......
T Consensus 151 i~~l~~~l~~~~~~ 164 (166)
T 3q72_A 151 VQALFEGVVRQIRL 164 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 101
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.00 E-value=1.1e-10 Score=97.98 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=49.6
Q ss_pred cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhh---------------c
Q 023354 192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDALRM---------------R 247 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---------------~ 247 (283)
++..++++|.+....+.. .. . .....+-.+++||+|+... ...+.+.+.+... .
T Consensus 93 ~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 93 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--CCHHHHHHHhCcccccccccccccccccC
Confidence 467899999877532211 00 0 0113345899999998653 2334443332211 1
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHH
Q 023354 248 DGGPFIFAQVKHGLGVEEIVNHILQ 272 (283)
Q Consensus 248 ~~~~i~~isa~~g~gi~~l~~~l~~ 272 (283)
...+++++||++|.|+++++++|.+
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 102
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=1.2e-09 Score=90.57 Aligned_cols=153 Identities=16% Similarity=0.116 Sum_probs=85.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHH
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~ 160 (283)
-..|+|+|+.|+|||||++.|++...........+.+... ..+ ..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-------~~~-----------~~----------------- 67 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV-------KTV-----------YR----------------- 67 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE-------EEE-----------EE-----------------
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE-------EEE-----------EE-----------------
Confidence 4689999999999999999999853221111111100000 000 00
Q ss_pred HHHHccccccCCCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcc
Q 023354 161 PLEELSNLFKADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLA 229 (283)
Q Consensus 161 ~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i 229 (283)
........++++.|+.....+.... ++..++++|.+.... +..... ..-...-.+|+||.|+.
T Consensus 68 ------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 68 ------HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp ------TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred ------CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 0011123344455544333333322 367899999876421 111100 00123347899999986
Q ss_pred cccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 230 SAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 230 ~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
.......+........ .+.+++++|+++|.|+++++++|......
T Consensus 142 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 142 EERVVPTEKGQLLAEQ--LGFDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp GGCCSCHHHHHHHHHH--HTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHH--cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5533333333332222 25689999999999999999999887654
No 103
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.99 E-value=3.7e-10 Score=103.70 Aligned_cols=160 Identities=24% Similarity=0.244 Sum_probs=89.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCc--hHHHHHhCCCCCCChHHHHH
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE--RIRAVETGGCPHAAIREDIS 156 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~--~~~~i~~~g~~~~~~~~~~~ 156 (283)
.....++|+|++|||||||++.|++... .+......+... .++.+.+. ...+++++|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-----~~~~~~~~t~~~-----~~~~~~~~~~~~~l~Dt~G~~--------- 225 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-----EIASYPFTTRGI-----NVGQFEDGYFRYQIIDTPGLL--------- 225 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-----EEECCTTCSSCE-----EEEEEEETTEEEEEEECTTTS---------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----ccCCCCCeeece-----eEEEEEecCceEEEEeCCCcc---------
Confidence 3567999999999999999999998532 111111111110 11111111 11223344431
Q ss_pred HHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcCCcEEEEeCCCCC--Cchhh------cCCcc-cccCEEEEEcC
Q 023354 157 INLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVSGGD--KIPRK------GGPGI-TQADLLVINKT 226 (283)
Q Consensus 157 ~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~~~l~llDpt~g~--~l~~~------~~~~i-~~ad~ivi~K~ 226 (283)
+....+ +.++++.+......++..++|+|++... ++... ..... ..+-.+|+||.
T Consensus 226 ---------------~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~ 290 (357)
T 2e87_A 226 ---------------DRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKI 290 (357)
T ss_dssp ---------------SSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCT
T ss_pred ---------------ccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 111222 6666665542222357899999976543 32211 00001 34457999999
Q ss_pred CcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 227 DLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 227 g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
|+.... ..+.....+. ....+++++||++|+|++++++++...+..
T Consensus 291 Dl~~~~--~~~~~~~~~~--~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 291 DVADEE--NIKRLEKFVK--EKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTCCHH--HHHHHHHHHH--HTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred ccCChH--HHHHHHHHHH--hcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 986541 1121222222 245789999999999999999999876643
No 104
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.99 E-value=3.9e-10 Score=93.77 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=49.3
Q ss_pred cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhh----------cCCCCe
Q 023354 192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDALRM----------RDGGPF 252 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~----------~~~~~i 252 (283)
++..++++|.+....+.. .. . .....+-.+++||+|+... ...+.+.+.+... ....++
T Consensus 91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC--CCHHHHHHHhCCccccccccccccceEEE
Confidence 367899999887532211 00 0 0113345899999998753 2333333322211 134578
Q ss_pred EEEEeccCCCHHHHHHHHHH
Q 023354 253 IFAQVKHGLGVEEIVNHILQ 272 (283)
Q Consensus 253 ~~isa~~g~gi~~l~~~l~~ 272 (283)
+++||++|.|+++++++|.+
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHT
T ss_pred EEeECCcCCCHHHHHHHHHh
Confidence 99999999999999999864
No 105
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.99 E-value=1.4e-09 Score=103.10 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=61.7
Q ss_pred HhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhc---CCCCeEEEEeccCCC
Q 023354 190 ELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVKHGLG 262 (283)
Q Consensus 190 al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~---~~~~i~~isa~~g~g 262 (283)
.-++..|+++|++.+....... ......+-.+|+||+|++.......+.+.+.+.+.. .+++++++||++|.|
T Consensus 276 ~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 355 (456)
T 4dcu_A 276 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKR 355 (456)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcC
Confidence 3467899999988763221110 001134558999999998765445555555555443 468999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 023354 263 VEEIVNHILQAWEAST 278 (283)
Q Consensus 263 i~~l~~~l~~~~~~~~ 278 (283)
++++++++...++.+.
T Consensus 356 v~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 356 IHTLMPAIIKASENHS 371 (456)
T ss_dssp GGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998876543
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.99 E-value=1.7e-10 Score=96.91 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=47.0
Q ss_pred CCcEEEEeCCCCCCchh-hc---CCcccccCEEEEEcCCcccccCCh---HHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354 193 DYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAIGAD---LAVMERDALRMRDGGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~~-~~---~~~i~~ad~ivi~K~g~i~~~g~~---~e~~~~~~~~~~~~~~i~~isa~~g~gi~~ 265 (283)
+..+++.|.+.+..... +. .........++.||.|.+.. |.. .+.+...+.+.....+.+++|++++.|+++
T Consensus 110 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~ 188 (210)
T 1pui_A 110 QGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS-GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 188 (210)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH-HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHH
T ss_pred cEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc-hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHH
Confidence 45677888765432211 10 00123344677999997643 111 111222222211235678899999999999
Q ss_pred HHHHHHHHHHH
Q 023354 266 IVNHILQAWEA 276 (283)
Q Consensus 266 l~~~l~~~~~~ 276 (283)
++++|.+....
T Consensus 189 l~~~l~~~~~~ 199 (210)
T 1pui_A 189 LRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 107
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.98 E-value=7.7e-10 Score=91.18 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=52.4
Q ss_pred CCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccCCCHHH
Q 023354 193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g~gi~~ 265 (283)
+.+++++|++........ .......+..+|+||.|+... ...+...+.+... ....+++++|+++|.|+++
T Consensus 106 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 106 QMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM--SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISE 183 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG--GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHH
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh--HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 567888998765321110 001124456899999998754 2333333333222 2446899999999999999
Q ss_pred HHHHHHHHHH
Q 023354 266 IVNHILQAWE 275 (283)
Q Consensus 266 l~~~l~~~~~ 275 (283)
++++|.+..+
T Consensus 184 l~~~l~~~l~ 193 (195)
T 3pqc_A 184 LLDLISTLLK 193 (195)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999987764
No 108
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.98 E-value=1.1e-10 Score=110.06 Aligned_cols=82 Identities=10% Similarity=0.055 Sum_probs=60.3
Q ss_pred CccccccCCCCCCCCCCCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee---cCCCC-----C
Q 023354 53 PHSHEPIYSPGYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTK-----E 122 (283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~---d~~~~-----~ 122 (283)
+......+++.|.. ...+++.+ |. .+|++++|+||||||||||+++|+|++.++ |.+.+.+. ++... .
T Consensus 130 ~~l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 34555666666643 23477778 76 459999999999999999999999999988 88888876 33221 1
Q ss_pred HHHHHHhccccCCc
Q 023354 123 DGEFLMRNGALPEE 136 (283)
Q Consensus 123 ~~~~~~~ig~v~q~ 136 (283)
...+.+.++|++|.
T Consensus 208 ~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 208 PDGRARSVVIAAPA 221 (438)
T ss_dssp HHHHHTEEEEEECT
T ss_pred ccccCceEEEEECC
Confidence 23355678999885
No 109
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.98 E-value=9.9e-10 Score=103.50 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=59.3
Q ss_pred HhcCCcEEEEeCCCCCCchhhcC----CcccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccCCC
Q 023354 190 ELADYIIYIIDVSGGDKIPRKGG----PGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHGLG 262 (283)
Q Consensus 190 al~~~~l~llDpt~g~~l~~~~~----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g~g 262 (283)
.-++..++++|++.+...+.... .....+-.+++||+|++.......+.+.+.+.+. ..++|++++||++|.|
T Consensus 256 ~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~ 335 (436)
T 2hjg_A 256 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKR 335 (436)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTT
T ss_pred HhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCC
Confidence 34688999999988643222110 0013456899999999865433333343333333 3578999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 023354 263 VEEIVNHILQAWEAS 277 (283)
Q Consensus 263 i~~l~~~l~~~~~~~ 277 (283)
++++++++...+..+
T Consensus 336 v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 336 IHTLMPAIIKASENH 350 (436)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887654
No 110
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.97 E-value=1.8e-09 Score=93.92 Aligned_cols=192 Identities=18% Similarity=0.168 Sum_probs=102.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc--ccCCchHHHHH----hCCCCCCC--
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG--ALPEERIRAVE----TGGCPHAA-- 150 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig--~v~q~~~~~i~----~~g~~~~~-- 150 (283)
+..+++++|+.|||||||++.|+..+. . .++.++..|+...... +..... -... ....+. .+++.++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP-YEPSIDVREFVT-VEEIMREGYGPNGAIVESYD 89 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS-SCCSEEGGGTCC-HHHHHTTTCCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC-CCCCCChhhccc-HHHHhhccCCCCCcEEecHH
Confidence 457899999999999999999998776 6 4888888887632100 000000 0000 000000 00000000
Q ss_pred hH-HHHHHHHHHHHHccccccCCCcccCCchHHHHHHH-------HHHhcC-CcEEEEeCCCCCCchhh---------cC
Q 023354 151 IR-EDISINLGPLEELSNLFKADLLLCESGGDNLAANF-------SRELAD-YIIYIIDVSGGDKIPRK---------GG 212 (283)
Q Consensus 151 ~~-~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~i-------a~al~~-~~l~llDpt~g~~l~~~---------~~ 212 (283)
.. .......+.++.+ ...++.+++++.|+.....+ ..++++ .+|+++|++...+.... ..
T Consensus 90 ~~~~~~~~l~~~l~~~--~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 90 RLMEKFNEYLNKILRL--EKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HHHTTHHHHHHHHHHH--HHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHH--hhcCCEEEEeCCCccchhhhhhhHHHHHHHHhhceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 00 0011122233333 23578889998887554322 122334 55667886554321110 00
Q ss_pred CcccccCEEEEEcCCcccccCC--hHHH------HhHH------------------HHhhcCCCCeEEEEeccCCCHHHH
Q 023354 213 PGITQADLLVINKTDLASAIGA--DLAV------MERD------------------ALRMRDGGPFIFAQVKHGLGVEEI 266 (283)
Q Consensus 213 ~~i~~ad~ivi~K~g~i~~~g~--~~e~------~~~~------------------~~~~~~~~~i~~isa~~g~gi~~l 266 (283)
.....+..+|+||+|+...... ..+. +.+. +.+..+..+++++|++++.|++++
T Consensus 168 ~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l 247 (262)
T 1yrb_A 168 LRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL 247 (262)
T ss_dssp HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred cccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence 1124567899999998643110 0010 0011 122234458999999999999999
Q ss_pred HHHHHHHHHH
Q 023354 267 VNHILQAWEA 276 (283)
Q Consensus 267 ~~~l~~~~~~ 276 (283)
+++|.+.++.
T Consensus 248 ~~~i~~~~~~ 257 (262)
T 1yrb_A 248 ETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999887754
No 111
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.96 E-value=2e-09 Score=88.93 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=60.7
Q ss_pred CCCcccCCchHHHHHHHHHH---hcCCcEEEEeCCCCCCchh---hcCCc---ccccCEEEEEcCCcccccCChHHHHhH
Q 023354 171 ADLLLCESGGDNLAANFSRE---LADYIIYIIDVSGGDKIPR---KGGPG---ITQADLLVINKTDLASAIGADLAVMER 241 (283)
Q Consensus 171 ~d~~i~eSgGq~q~~~ia~a---l~~~~l~llDpt~g~~l~~---~~~~~---i~~ad~ivi~K~g~i~~~g~~~e~~~~ 241 (283)
....++++.|+.....+... -++..++++|++....+.. ..... ....-.+|+||+| ........+...+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~~~~~~~~~~~~~ 171 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID-KNKFQVDILEVQK 171 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-CC-CCSCHHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-cccccCCHHHHHH
Confidence 34445667775433223322 2468899999887532111 10000 1134589999999 4322233344444
Q ss_pred HHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 242 DALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 242 ~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.+.. .+.+++++||+++.|+++++++|.....
T Consensus 172 ~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 172 YAQD--NNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp HHHH--TTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHH--cCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3333 3568999999999999999999987654
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.96 E-value=1.7e-09 Score=89.42 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=51.8
Q ss_pred CCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCChHHHHhHHHHh---hcCCCCeEEEEeccCCCHHH
Q 023354 193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~---~~~~~~i~~isa~~g~gi~~ 265 (283)
+..++++|++........ .......+..+|+||+|+.... ..+...+.+.+ .....+++++|++++.|+++
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 184 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKG--KWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE 184 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGG--GHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChH--HHHHHHHHHHHHHcccCCCceEEEEccCCCCHHH
Confidence 578899998775332211 0001234568999999987642 22222222322 23467899999999999999
Q ss_pred HHHHHHHHH
Q 023354 266 IVNHILQAW 274 (283)
Q Consensus 266 l~~~l~~~~ 274 (283)
++++|.+.+
T Consensus 185 l~~~l~~~l 193 (195)
T 1svi_A 185 AWGAIKKMI 193 (195)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 113
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.96 E-value=2.2e-10 Score=97.02 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=39.1
Q ss_pred CCCCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCH-HHHHHhccccCCchHHH
Q 023354 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRA 140 (283)
Q Consensus 67 ~~~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~ 140 (283)
...+.+++ .-..+|++++|+||||||||||+++|+|+++. +.+.. ++....+ ...++.++|++|++..+
T Consensus 7 ~~~~~~~~-~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~ 76 (207)
T 1znw_A 7 DTKPTARG-QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSV-SATTRAPRPGEVDGVDYHFIDPTRF 76 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECC-CEESSCCCTTCCBTTTBEECCHHHH
T ss_pred CCCcCCCC-CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcc-cccccCCcccccCCCeeEecCHHHH
Confidence 33445555 22356999999999999999999999999852 22221 1111111 11245689999987543
No 114
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.96 E-value=4.5e-10 Score=98.93 Aligned_cols=49 Identities=16% Similarity=0.418 Sum_probs=41.4
Q ss_pred CCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccC--CCcEEEEeecCC
Q 023354 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIF 119 (283)
Q Consensus 70 ~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~g~i~i~~~d~~ 119 (283)
+.+++++ ..+|++++|+||||||||||+++|+|+++| .|+|.+++.++.
T Consensus 15 ~vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 15 DKVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE 65 (261)
T ss_dssp THHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred HHHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence 3566777 567999999999999999999999999976 489988887653
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.95 E-value=3.8e-10 Score=92.41 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=47.8
Q ss_pred hcCCcEEEEeCCCCCCchhh--cC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 191 LADYIIYIIDVSGGDKIPRK--GG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~~~--~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
-++..++++|.+........ .. .....+-.+|+||+|+.... .. . ......+++++||++|.|+
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~--~------~~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET-LG--M------SEVNGHALIRLSARTGEGV 153 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC-CE--E------EEETTEEEEECCTTTCTTH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcch-hh--h------hhccCCceEEEeCCCCCCH
Confidence 34688999998765321110 00 00123458999999985321 10 0 0113457899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023354 264 EEIVNHILQAWEAS 277 (283)
Q Consensus 264 ~~l~~~l~~~~~~~ 277 (283)
++++++|.+.+...
T Consensus 154 ~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 154 DVLRNHLKQSMGFD 167 (172)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHhhhc
Confidence 99999998876543
No 116
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.95 E-value=8.2e-10 Score=89.42 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=51.6
Q ss_pred cCCcEEEEeCCCCCCc---hh------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI---PR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+....+ .. .....-..+-.+|+||+|+.....-..+........ .+.+++++||++|.|
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 78 GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV--FDCKFIETSATLQHN 155 (175)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH--HTSEEEECBTTTTBS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH--cCCeEEEEecCCCCC
Confidence 3578899998763211 11 000011234589999999875432223322222222 246899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 023354 263 VEEIVNHILQAWEAS 277 (283)
Q Consensus 263 i~~l~~~l~~~~~~~ 277 (283)
+++++++|.......
T Consensus 156 i~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 156 VAELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876544
No 117
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.95 E-value=1.5e-09 Score=87.29 Aligned_cols=83 Identities=17% Similarity=0.106 Sum_probs=51.3
Q ss_pred hcCCcEEEEeCCCCC---Cchhhc-------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354 191 LADYIIYIIDVSGGD---KIPRKG-------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG 260 (283)
Q Consensus 191 l~~~~l~llDpt~g~---~l~~~~-------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g 260 (283)
-++..++++|++... .+.... ...-..+-.+++||.|+........+........ .+.+++++|+++|
T Consensus 74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~ 151 (172)
T 2erx_A 74 KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART--WKCAFMETSAKLN 151 (172)
T ss_dssp HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTCEEEECBTTTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHH--hCCeEEEecCCCC
Confidence 357889999987632 111100 0001234589999999876532222222222222 3468899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWE 275 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~ 275 (283)
.|+++++++|.....
T Consensus 152 ~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 152 HNVKELFQELLNLEK 166 (172)
T ss_dssp BSHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999987553
No 118
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.95 E-value=1.7e-09 Score=86.51 Aligned_cols=83 Identities=19% Similarity=0.111 Sum_probs=52.2
Q ss_pred cCCcEEEEeCCCCCCc---hhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI---PRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+....+ ... ........-.+|+||.|+........+........ .+.+++++|+++|.|
T Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~g 152 (167)
T 1kao_A 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE--WGCPFMETSAKSKTM 152 (167)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTSCEEEECTTCHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH--hCCCEEEecCCCCcC
Confidence 4688999998764211 110 00011234589999999875432223333322222 256899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWEA 276 (283)
Q Consensus 263 i~~l~~~l~~~~~~ 276 (283)
+++++++|.....+
T Consensus 153 i~~l~~~l~~~~~~ 166 (167)
T 1kao_A 153 VDELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999877653
No 119
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.94 E-value=3.4e-09 Score=89.69 Aligned_cols=85 Identities=8% Similarity=-0.043 Sum_probs=52.1
Q ss_pred CCcEEEEeCCCCCCchh-hc---CCcccccCEEEEEcCCcccccCC--hHHHHhHHHHhh-----cCCCCeEEEEeccCC
Q 023354 193 DYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAIGA--DLAVMERDALRM-----RDGGPFIFAQVKHGL 261 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~~-~~---~~~i~~ad~ivi~K~g~i~~~g~--~~e~~~~~~~~~-----~~~~~i~~isa~~g~ 261 (283)
+.+++++|++.+..... .. .........+|+||+|++..... ..+.+.+.+... ....+++.+|+++|.
T Consensus 117 d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~ 196 (223)
T 4dhe_A 117 CGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRT 196 (223)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTB
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCc
Confidence 45899999876532111 00 01123456899999998754110 111122222222 356789999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 023354 262 GVEEIVNHILQAWEAS 277 (283)
Q Consensus 262 gi~~l~~~l~~~~~~~ 277 (283)
|+++++++|...++..
T Consensus 197 gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 197 GLDDAHALIESWLRPA 212 (223)
T ss_dssp SHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHhcCcc
Confidence 9999999999877543
No 120
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.94 E-value=3.3e-09 Score=88.32 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=52.6
Q ss_pred cCCcEEEEeCCCCCCc---hh------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI---PR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+....+ .. .........-.+|+||.|+........+........ .+.+++++|+++|.|
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ--WNVNYVETSAKTRAN 163 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEEECTTTCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH--hCCeEEEEeCCCCCC
Confidence 5788999998764211 11 001111234589999999876533333333333332 246899999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWE 275 (283)
Q Consensus 263 i~~l~~~l~~~~~ 275 (283)
+++++++|.....
T Consensus 164 i~~l~~~l~~~i~ 176 (206)
T 2bov_A 164 VDKVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 121
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.94 E-value=2e-09 Score=89.01 Aligned_cols=84 Identities=24% Similarity=0.209 Sum_probs=53.6
Q ss_pred cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++.... +..... ..-...-.+|+||+|+........+...... ...+.+++++|+++|.|+
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA--DSLGIPFLETSAKNATNV 166 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHH--HHTTCCEEEECTTTCTTH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHH--HHcCCcEEEEeCCCCCCH
Confidence 467899999876421 111100 0012345899999998765433333332222 224578999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023354 264 EEIVNHILQAWEAS 277 (283)
Q Consensus 264 ~~l~~~l~~~~~~~ 277 (283)
++++++|...+...
T Consensus 167 ~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 167 EQSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876543
No 122
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.94 E-value=1.5e-09 Score=104.73 Aligned_cols=102 Identities=16% Similarity=0.013 Sum_probs=65.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCc-E-EEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHH
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYS-L-AAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS 156 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~-i-~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~ 156 (283)
.+|++++|+|+||||||||++.+++...+.|. + .+...+ ...++..+. ..+ +. ..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee----~~~~l~~~~----------~~~-g~---~~----- 335 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE----SRAQLLRNA----------YSW-GM---DF----- 335 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS----CHHHHHHHH----------HTT-SC---CH-----
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC----CHHHHHHHH----------HHc-CC---CH-----
Confidence 46999999999999999999999999887764 3 333322 122222211 011 11 11
Q ss_pred HHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEeCCCCCC
Q 023354 157 INLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDK 206 (283)
Q Consensus 157 ~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llDpt~g~~ 206 (283)
+.+...+.....+....+ |+|++|++.+|+++. +|.++++||+++.+
T Consensus 336 ---~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 336 ---EEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp ---HHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred ---HHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 012222223333444444 999999999999987 59999999888644
No 123
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.94 E-value=3.3e-09 Score=84.80 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=52.4
Q ss_pred cCCcEEEEeCCCCCCch---hh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKIP---RK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|++....+. .. ........-.+++||+|+........+........ .+.+++++|+++|.|
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~g 153 (168)
T 1u8z_A 76 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ--WNVNYVETSAKTRAN 153 (168)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTCEEEECCTTTCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH--cCCeEEEeCCCCCCC
Confidence 57889999987642111 10 00001234589999999876533333333333322 246899999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWE 275 (283)
Q Consensus 263 i~~l~~~l~~~~~ 275 (283)
++++++++.....
T Consensus 154 i~~l~~~l~~~i~ 166 (168)
T 1u8z_A 154 VDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 124
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.93 E-value=2e-09 Score=87.60 Aligned_cols=83 Identities=24% Similarity=0.180 Sum_probs=52.5
Q ss_pred cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++.... +..... ......-.+++||+|+........+........ .+.+++++||+++.|+
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKE--YGLPFMETSAKTGLNV 161 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH--HTCCEEECCTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHH--cCCeEEEEeCCCCCCH
Confidence 367899999876421 111100 001234589999999875432233333332222 2468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
+++++++......
T Consensus 162 ~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 162 DLAFTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 125
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.93 E-value=1.6e-09 Score=87.21 Aligned_cols=81 Identities=20% Similarity=0.176 Sum_probs=51.0
Q ss_pred CCcEEEEeCCCCCCch---hhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 193 DYIIYIIDVSGGDKIP---RKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~---~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
+..++++|++....+. ..... .-...-.+++||.|+........+........ .+.+++++|+++|.|++
T Consensus 80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 80 NGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES--VGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH--TTCEEEEEBTTTTBSHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH--cCCeEEEecCCCCCCHH
Confidence 5788999987642111 10000 01233489999999876432333333333222 35789999999999999
Q ss_pred HHHHHHHHHHH
Q 023354 265 EIVNHILQAWE 275 (283)
Q Consensus 265 ~l~~~l~~~~~ 275 (283)
+++++|.....
T Consensus 158 ~l~~~l~~~~~ 168 (170)
T 1z08_A 158 ELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 126
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.93 E-value=1.5e-09 Score=87.31 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=49.5
Q ss_pred cCCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++....+. .... ..-...-.+++||+|+........+........ .+.+++++|++++.|+
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 79 SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS--IHAIFVETSAKNAINI 156 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHH--cCCEEEEEeCCCCcCH
Confidence 35788999987642111 1000 001223367789999976532233333332222 3568999999999999
Q ss_pred HHHHHHHHHHH
Q 023354 264 EEIVNHILQAW 274 (283)
Q Consensus 264 ~~l~~~l~~~~ 274 (283)
++++++|....
T Consensus 157 ~~l~~~i~~~i 167 (170)
T 1z0j_A 157 NELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 127
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.92 E-value=5e-09 Score=85.97 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=52.8
Q ss_pred cCCcEEEEeCCCCCCc---hhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI---PRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..|+++|++....+ ... .......+-.+|+||.|+........+........ .+.+++++|++++.|
T Consensus 94 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~ 171 (195)
T 3bc1_A 94 AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK--YGIPYFETSAANGTN 171 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCCEEECCTTTCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH--cCCCEEEEECCCCCC
Confidence 3578999998764211 110 00001334589999999876432333333333222 246899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWEA 276 (283)
Q Consensus 263 i~~l~~~l~~~~~~ 276 (283)
+++++++|......
T Consensus 172 v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 172 ISHAIEMLLDLIMK 185 (195)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 128
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.92 E-value=1.5e-09 Score=87.38 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=53.6
Q ss_pred cCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+... .+.... ...-..+-.+|+||.|+........+........ .+.+++++|++++.|
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~ 153 (169)
T 3q85_A 76 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT--LSCKHIETSAALHHN 153 (169)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECBTTTTBS
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHH--cCCcEEEecCccCCC
Confidence 57889999987632 111110 0001234589999999875433343443333222 356899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWEA 276 (283)
Q Consensus 263 i~~l~~~l~~~~~~ 276 (283)
++++++++......
T Consensus 154 v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 154 TRELFEGAVRQIRL 167 (169)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876643
No 129
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.92 E-value=4.7e-10 Score=90.98 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=48.0
Q ss_pred cCCcEEEEeCCCCCCchhhcC--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRKGG--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
++..++++|+++......... .....+-.++.||.|+........+ . ..+.+. .+.+++++||++|.|+++++++
T Consensus 82 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~-~~~~~~-~~~~~~~~SA~~~~~v~~l~~~ 158 (165)
T 2wji_A 82 PDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEID-V-DKLEKI-LGVKVVPLSAAKKMGIEELKKA 158 (165)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCC-H-HHHHHH-HTSCEEECBGGGTBSHHHHHHH
T ss_pred CCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhH-H-HHHHHH-hCCCEEEEEcCCCCCHHHHHHH
Confidence 467888999876322111000 0013345899999998643221111 1 111121 2468999999999999999999
Q ss_pred HHHHH
Q 023354 270 ILQAW 274 (283)
Q Consensus 270 l~~~~ 274 (283)
+....
T Consensus 159 l~~~~ 163 (165)
T 2wji_A 159 ISIAV 163 (165)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87643
No 130
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.92 E-value=1.1e-09 Score=93.68 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=49.7
Q ss_pred CCcEEEEeCCCCCCch--h------hcCCc-ccccCEEEEEcCCcccccCChHHH--HhHHHHhhc-CCCCeEEEEeccC
Q 023354 193 DYIIYIIDVSGGDKIP--R------KGGPG-ITQADLLVINKTDLASAIGADLAV--MERDALRMR-DGGPFIFAQVKHG 260 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~--~------~~~~~-i~~ad~ivi~K~g~i~~~g~~~e~--~~~~~~~~~-~~~~i~~isa~~g 260 (283)
+.+|+++|++....+. . ..... -...-.+|+||+|+.....-..+. ....+.... ...+++++||++|
T Consensus 110 d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 189 (228)
T 2qu8_A 110 GVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTG 189 (228)
T ss_dssp EEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTC
T ss_pred cEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccC
Confidence 5788999987653221 1 00000 134458999999987543222221 111222222 2268899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWE 275 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~ 275 (283)
.|+++++++|...+.
T Consensus 190 ~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 190 VGVEQAKITACELLK 204 (228)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 131
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.92 E-value=1.7e-09 Score=86.90 Aligned_cols=81 Identities=22% Similarity=0.187 Sum_probs=49.2
Q ss_pred cCCcEEEEeCCCCCCchh---hcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++....+.. ... ..-...-.++.||+|+........+....... ..+.+++++|+++|.|+
T Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNV 156 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEECCTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHH--HcCCeEEEEeCCCCCCH
Confidence 467899999876422111 000 00122335667999987543222333333222 24568899999999999
Q ss_pred HHHHHHHHHHH
Q 023354 264 EEIVNHILQAW 274 (283)
Q Consensus 264 ~~l~~~l~~~~ 274 (283)
++++++|...+
T Consensus 157 ~~l~~~i~~~~ 167 (170)
T 1r2q_A 157 NEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 132
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.92 E-value=5.5e-10 Score=90.83 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=51.1
Q ss_pred CCcEEEEeCCCCCCchh----hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcC-------CCCeEEEEeccCC
Q 023354 193 DYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRD-------GGPFIFAQVKHGL 261 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~~----~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~-------~~~i~~isa~~g~ 261 (283)
+..++++|.+....... .........-.+|+||.|+... .. +.+...+..... ..+++++||++|.
T Consensus 80 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 80 DIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA--NP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS--CH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC--CH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 56788999776421110 0000113445899999998754 22 222222221111 1478999999999
Q ss_pred CHHHHHHHHHHHHHHhh
Q 023354 262 GVEEIVNHILQAWEAST 278 (283)
Q Consensus 262 gi~~l~~~l~~~~~~~~ 278 (283)
|+++++++|........
T Consensus 157 gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 157 GLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhhhhc
Confidence 99999999998876544
No 133
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.92 E-value=1.6e-09 Score=89.63 Aligned_cols=83 Identities=22% Similarity=0.114 Sum_probs=52.3
Q ss_pred cCCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..|+++|++....+ .... .......-.+|+||+|+........+....... ..+.+++.+|++++.|+
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAE--NNGLLFLETSALDSTNV 175 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEEECTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHH--HcCCEEEEEeCCCCCCH
Confidence 4678899998764211 1110 001123458999999997643223333333222 24568999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
++++++|......
T Consensus 176 ~~l~~~l~~~i~~ 188 (193)
T 2oil_A 176 ELAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876543
No 134
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.91 E-value=2.4e-09 Score=89.78 Aligned_cols=83 Identities=23% Similarity=0.152 Sum_probs=51.9
Q ss_pred cCCcEEEEeCCCCCC---chhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC-CeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGG-PFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~-~i~~isa~~g~g 262 (283)
++..|+++|++.... +...... .....-.+|+||.|+........+...+.. +.. +. +++++||+++.|
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-~~~-~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLA-EHY-DILCAIETSAKDSSN 179 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-HHT-TCSEEEECBTTTTBS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHH-HHc-CCCEEEEEeCCCCCC
Confidence 468899999876421 1111000 012344789999998754222333333322 222 44 889999999999
Q ss_pred HHHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWEA 276 (283)
Q Consensus 263 i~~l~~~l~~~~~~ 276 (283)
+++++++|......
T Consensus 180 i~~l~~~l~~~i~~ 193 (201)
T 2hup_A 180 VEEAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 135
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.91 E-value=6.9e-09 Score=85.75 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=52.4
Q ss_pred hcCCcEEEEeCCCCCCch---hh------cCCcccccCEEEEEcCCccccc--CChHHHHhHHHHhhcCCCCeEEEEecc
Q 023354 191 LADYIIYIIDVSGGDKIP---RK------GGPGITQADLLVINKTDLASAI--GADLAVMERDALRMRDGGPFIFAQVKH 259 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~---~~------~~~~i~~ad~ivi~K~g~i~~~--g~~~e~~~~~~~~~~~~~~i~~isa~~ 259 (283)
-++..++++|.+....+. .. ........-.++.||+|+.... .-..+.... +.......+++.+||++
T Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~-~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 85 WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARK-LSTDLKRCTYYETCATY 163 (184)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHH-HHHHTTTCEEEEEBTTT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHH-HHHHcCCCeEEEecCCC
Confidence 357889999987642111 11 0001123447889999985221 112222222 33334457899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAWEA 276 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~~ 276 (283)
|.|++++++++......
T Consensus 164 ~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999876644
No 136
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.91 E-value=8.2e-10 Score=99.15 Aligned_cols=160 Identities=17% Similarity=0.104 Sum_probs=83.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCch--HHHHHhCCCCCCChHHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER--IRAVETGGCPHAAIREDISI 157 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~--~~~i~~~g~~~~~~~~~~~~ 157 (283)
++.+|+|+|++|||||||+|.|+|. ++.+....+.++.. +..|++++.. ..+++++|... ...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~-----~~~i~s~~~~tTr~----~~~gi~~~~~~~i~~iDTpG~~~----~~~-- 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ-----KISITSRKAQTTRH----RIVGIHTEGAYQAIYVDTPGLHM----EEK-- 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC-----SEEECCCCSSCCSS----CEEEEEEETTEEEEEESSSSCCH----HHH--
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC-----CccccCCCCCccee----eEEEEEEECCeeEEEEECcCCCc----cch--
Confidence 4568999999999999999999995 23333322322211 2234444322 23445555420 000
Q ss_pred HHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhh-c---CCcccccCEEEEEcCCcccccC
Q 023354 158 NLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINKTDLASAIG 233 (283)
Q Consensus 158 ~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~-~---~~~i~~ad~ivi~K~g~i~~~g 233 (283)
..+....... ... +...++..++++|++. ..-..+ . ......+..+++||.|+.....
T Consensus 72 --~~l~~~~~~~-~~~--------------~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~ 133 (301)
T 1ega_A 72 --RAINRLMNKA-ASS--------------SIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKA 133 (301)
T ss_dssp --HHHHHHHTCC-TTS--------------CCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHH
T ss_pred --hhHHHHHHHH-HHH--------------HHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHH
Confidence 0111000000 000 0011346788899765 221111 0 0011346689999999864100
Q ss_pred ChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354 234 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 234 ~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~ 273 (283)
...+.+ ..+.+.....+++++|++++.|++++++++...
T Consensus 134 ~~~~~l-~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 134 DLLPHL-QFLASQMNFLDIVPISAETGLNVDTIAAIVRKH 172 (301)
T ss_dssp HHHHHH-HHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTT
T ss_pred HHHHHH-HHHHHhcCcCceEEEECCCCCCHHHHHHHHHHh
Confidence 111111 222233333468999999999999999998864
No 137
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.91 E-value=2.1e-10 Score=93.55 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=40.1
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~ 118 (283)
+++.++|.. +|++++|+||||||||||+++|+|++ |. |.|.+.+.++
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 566777774 59999999999999999999999999 76 9988776655
No 138
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.91 E-value=3.2e-09 Score=86.66 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=54.0
Q ss_pred hcCCcEEEEeCCCCCCch---hh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354 191 LADYIIYIIDVSGGDKIP---RK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL 261 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~---~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~ 261 (283)
-++..++++|++....+. .. ........-.+|+||+|+........+........ .+.+++++|++++.
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 89 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ--WNVNYVETSAKTRA 166 (187)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH--TTCEEEECCTTTCT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH--cCCeEEEeCCCCCC
Confidence 357889999987642111 10 00001234489999999876433333333333322 35689999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 023354 262 GVEEIVNHILQAWEAS 277 (283)
Q Consensus 262 gi~~l~~~l~~~~~~~ 277 (283)
|+++++++|.......
T Consensus 167 gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 167 NVDKVFFDLMREIRAR 182 (187)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998876543
No 139
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.91 E-value=6.9e-10 Score=105.78 Aligned_cols=79 Identities=23% Similarity=0.240 Sum_probs=52.0
Q ss_pred cCCcEEEEeCCCCCCch---h---hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354 192 ADYIIYIIDVSGGDKIP---R---KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~---~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~ 265 (283)
++.+|+|+|++...... . .....-.....+|+||+|+.... ..+. +.+.+. ...+++.+||++|.|+++
T Consensus 313 aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~--~~~~--~~l~~~-~~~~~i~vSAktg~GI~e 387 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANA--DALI--RAIADG-TGTEVIGISALNGDGIDT 387 (476)
T ss_dssp CSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTT--HHHH--HHHHHH-HTSCEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCcc--chhH--HHHHhc-CCCceEEEEECCCCCHHH
Confidence 35789999988764331 0 00000134568999999987652 2221 222222 236899999999999999
Q ss_pred HHHHHHHHHH
Q 023354 266 IVNHILQAWE 275 (283)
Q Consensus 266 l~~~l~~~~~ 275 (283)
++++|.+.+.
T Consensus 388 L~~~i~~~~~ 397 (476)
T 3gee_A 388 LKQHMGDLVK 397 (476)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988776
No 140
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.91 E-value=1.9e-09 Score=89.38 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=52.1
Q ss_pred cCCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++....+. .... ..-...-.+|+||+|+........+...+.... .+.+++++|++++.|+
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES--IGAIVVETSAKNAINI 173 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT--TTCEEEECBTTTTBSH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH--cCCEEEEEeCCCCcCH
Confidence 46789999987653211 1000 001234478999999975432333333333322 3578999999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWE 275 (283)
Q Consensus 264 ~~l~~~l~~~~~ 275 (283)
++++++|.....
T Consensus 174 ~~l~~~l~~~i~ 185 (192)
T 2fg5_A 174 EELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
No 141
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.91 E-value=8.7e-10 Score=89.57 Aligned_cols=81 Identities=11% Similarity=0.089 Sum_probs=51.3
Q ss_pred CCcEEEEeCCCCCC---chhhc-------C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354 193 DYIIYIIDVSGGDK---IPRKG-------G--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG 260 (283)
Q Consensus 193 ~~~l~llDpt~g~~---l~~~~-------~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g 260 (283)
+..++++|.+.... +.... . ......-.+++||+|+.... ...+...+ +.......+++++|+++|
T Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~-~~~~~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEEAQA-WCRDNGDYPYFETSAKDA 158 (177)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHHHHH-HHHHTTCCCEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHHHHH-HHHhcCCceEEEEeCCCC
Confidence 57888999876421 11100 0 00123458999999987322 22333333 223355678999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWE 275 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~ 275 (283)
.|++++++++.....
T Consensus 159 ~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 159 TNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 142
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.91 E-value=3e-09 Score=86.24 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=51.6
Q ss_pred cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++.... +..... ......-.+|+||+|+........+...+.... .+.+++++|++++.|+
T Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 88 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE--NGLLFLEASAKTGENV 165 (179)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECCTTTCTTH
T ss_pred CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence 468899999876421 111000 001233489999999875433333333333322 3568999999999999
Q ss_pred HHHHHHHHHHH
Q 023354 264 EEIVNHILQAW 274 (283)
Q Consensus 264 ~~l~~~l~~~~ 274 (283)
++++++|....
T Consensus 166 ~~l~~~l~~~i 176 (179)
T 1z0f_A 166 EDAFLEAAKKI 176 (179)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 143
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.90 E-value=1.1e-09 Score=92.14 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=51.5
Q ss_pred cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|.+.... +..... ......-.+|+||+|+........+........ .+.+++++||++|.|+
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA--QDMYYLETSAKESDNV 176 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH--HTCCEEECCTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence 357899999876421 111100 001233478899999875432233333332222 3468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
++++++|......
T Consensus 177 ~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 177 EKLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876643
No 144
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.90 E-value=2.9e-09 Score=88.41 Aligned_cols=84 Identities=23% Similarity=0.184 Sum_probs=53.5
Q ss_pred hcCCcEEEEeCCCCCCc---hhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 191 LADYIIYIIDVSGGDKI---PRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l---~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
-++.+|+++|.+....+ ..... ..-...-.||+||+|+.....-..+.... +.+...+.+++.+|+++|.|
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEK-FAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHTSTTCEEEECBTTTTBS
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHH-HHHhcCCCeEEEEeCCCCCC
Confidence 35788999998774221 11100 00123458999999987543222333322 33333467899999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWE 275 (283)
Q Consensus 263 i~~l~~~l~~~~~ 275 (283)
+++++++|.....
T Consensus 177 i~~l~~~l~~~i~ 189 (192)
T 2il1_A 177 VDEIFLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 145
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.90 E-value=5.4e-10 Score=91.14 Aligned_cols=83 Identities=22% Similarity=0.144 Sum_probs=51.6
Q ss_pred cCCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++....+. .... ..-...-.+++||.|+........+........ .+.+++++|+++|.|+
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE--NGLFFMETSAKTATNV 162 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH--TTCEEEECCSSSCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH--cCCEEEEEECCCCCCH
Confidence 46789999987642211 1000 001233478999999875432233333333222 4568999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
++++++|...+..
T Consensus 163 ~~l~~~l~~~~~~ 175 (181)
T 2efe_B 163 KEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876543
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.89 E-value=1.8e-09 Score=99.51 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=48.6
Q ss_pred cCCcEEEEeCCCCCC-ch----------hhcCCcccccCEEEEEcCCcccccCChHH---HHhHHHHhh-cCCCCeEEEE
Q 023354 192 ADYIIYIIDVSGGDK-IP----------RKGGPGITQADLLVINKTDLASAIGADLA---VMERDALRM-RDGGPFIFAQ 256 (283)
Q Consensus 192 ~~~~l~llDpt~g~~-l~----------~~~~~~i~~ad~ivi~K~g~i~~~g~~~e---~~~~~~~~~-~~~~~i~~is 256 (283)
++.+++++|.+.... .. .... .....-.+|.||.|++.. ...+ .+....... .+..+++++|
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~-~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIG-VSGKPILVTLNKIDKING--DLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT-CCSCCEEEEEECGGGCCS--CHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhC-cCCCCEEEEEECCCCCCc--hHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 466788888765420 10 0100 013345889999998643 2222 111111222 2234678999
Q ss_pred eccCCCHHHHHHHHHHHHHH
Q 023354 257 VKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 257 a~~g~gi~~l~~~l~~~~~~ 276 (283)
++++.|+++++++|.+.+..
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999886643
No 147
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.89 E-value=1.8e-09 Score=90.41 Aligned_cols=82 Identities=17% Similarity=0.092 Sum_probs=51.6
Q ss_pred cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..|+++|++.... +..... ..-...-.+|+||+|+........+....... ..+.+++++||++|.|+
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ--ENELMFLETSALTGENV 175 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEEECTTTCTTH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHH--HcCCEEEEEeCCCCCCH
Confidence 468899999876421 111100 00123448999999987543222222222222 24578999999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWE 275 (283)
Q Consensus 264 ~~l~~~l~~~~~ 275 (283)
++++++|.....
T Consensus 176 ~~l~~~l~~~i~ 187 (200)
T 2o52_A 176 EEAFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 148
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.89 E-value=8e-10 Score=89.87 Aligned_cols=84 Identities=19% Similarity=0.087 Sum_probs=52.9
Q ss_pred cCCcEEEEeCCCCCCchh---hcC----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGG----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
++..++++|++....+.. ... ..-..+-.+|+||+|+........+........ .+.+++.+|+++|.|++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQ--MGIQLFETSAKENVNVE 159 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCCEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHH--cCCeEEEEECCCCCCHH
Confidence 357899999877422111 000 000234489999999876533333333322222 24689999999999999
Q ss_pred HHHHHHHHHHHHh
Q 023354 265 EIVNHILQAWEAS 277 (283)
Q Consensus 265 ~l~~~l~~~~~~~ 277 (283)
+++++|.......
T Consensus 160 ~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 160 EMFNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876544
No 149
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.89 E-value=1.6e-09 Score=90.41 Aligned_cols=82 Identities=24% Similarity=0.204 Sum_probs=50.0
Q ss_pred cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccc------cCChHHHHhHHHHhhcCCCCeEEEEe
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASA------IGADLAVMERDALRMRDGGPFIFAQV 257 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~------~g~~~e~~~~~~~~~~~~~~i~~isa 257 (283)
++..|+++|++.... +..... ..-...-.+|+||.|+... ..-..+........ .+.+++++||
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~SA 178 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT--YGALFCETSA 178 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH--HTCEEEECCT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHH--cCCeEEEeeC
Confidence 578999999876421 111100 0012345899999998632 11122222222222 2568999999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 023354 258 KHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 258 ~~g~gi~~l~~~l~~~~~ 275 (283)
++|.|+++++++|.....
T Consensus 179 ~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TTCTTHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987653
No 150
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.88 E-value=4.7e-09 Score=85.86 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=53.0
Q ss_pred cCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEec-cCC
Q 023354 192 ADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK-HGL 261 (283)
Q Consensus 192 ~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~-~g~ 261 (283)
++..++++|.+... .+.... ......+-.+|+||.|+........+......... +.+++++|++ ++.
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY--NIPYIETSAKDPPL 167 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH--TCCEEEEBCSSSCB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh--CCeEEEeccCCCCC
Confidence 57889999987642 111110 00112345899999998754333334333333332 4789999999 999
Q ss_pred CHHHHHHHHHHHHH
Q 023354 262 GVEEIVNHILQAWE 275 (283)
Q Consensus 262 gi~~l~~~l~~~~~ 275 (283)
|+++++++|.+.+.
T Consensus 168 ~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 168 NVDKTFHDLVRVIR 181 (183)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987664
No 151
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.88 E-value=1.4e-09 Score=97.71 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=50.6
Q ss_pred cCCcEEEEeCCCCCCchhhc----CCcc--cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRKG----GPGI--TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~----~~~i--~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~ 265 (283)
+|.+++++|++.+....... .... ..+-.+++||+|+.... . + +.+.+....+..+++++||++|.|+++
T Consensus 87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~--~-~-~~~~~~~~~~~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP--E-E-AMKAYHELLPEAEPRMLSALDERQVAE 162 (301)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH--H-H-HHHHHHHTSTTSEEEECCTTCHHHHHH
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCch--H-H-HHHHHHHhcCcCcEEEEeCCCCCCHHH
Confidence 46889999988753221110 0011 34568999999987431 1 1 222233334456789999999999999
Q ss_pred HHHHHHHHH
Q 023354 266 IVNHILQAW 274 (283)
Q Consensus 266 l~~~l~~~~ 274 (283)
+++++....
T Consensus 163 l~~~l~~~l 171 (301)
T 1wf3_A 163 LKADLLALM 171 (301)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999997643
No 152
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.88 E-value=9e-10 Score=91.13 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=50.5
Q ss_pred cCCcEEEEeCCCCCCchh---h---c-CC--cccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDKIPR---K---G-GP--GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~---~-~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~ 259 (283)
++.+++++|.+....+.. . . .. .....-.+|+||+|+.... ..+.+...+... ....+++++||++
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 467899999876432211 0 0 00 1133458999999987542 222222222111 1345789999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAWE 275 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~ 275 (283)
|.|+++++++|...+.
T Consensus 169 g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSK 184 (188)
T ss_dssp CTTHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987654
No 153
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.87 E-value=2.7e-09 Score=86.63 Aligned_cols=84 Identities=15% Similarity=0.091 Sum_probs=53.4
Q ss_pred cCCcEEEEeCCCCCCc---hhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI---PRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+....+ .... .......-.+|+||.|+.....-..+...... ...+.+++++|+++|.|
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~--~~~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG--ASHHVAYFEASAKLRLN 158 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH--HHTTCEEEECBTTTTBS
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH--HHcCCeEEEecCCCCCC
Confidence 5788999998764211 1100 00112345899999998764322233332222 22466899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 023354 263 VEEIVNHILQAWEAS 277 (283)
Q Consensus 263 i~~l~~~l~~~~~~~ 277 (283)
+++++++|.......
T Consensus 159 v~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 159 VDEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877544
No 154
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.87 E-value=5.7e-09 Score=85.95 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=51.6
Q ss_pred cCCcEEEEeCCCCC---------Cchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC-CeEEEEe
Q 023354 192 ADYIIYIIDVSGGD---------KIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGG-PFIFAQV 257 (283)
Q Consensus 192 ~~~~l~llDpt~g~---------~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~-~i~~isa 257 (283)
++..|+++|++... .+.... ...-..+-.+|+||.|+... ...+...+. .+. .+. +++++||
T Consensus 98 ~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~~-~~~~~~~~~Sa 173 (198)
T 3t1o_A 98 VDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEMVRAV-VDP-EGKFPVLEAVA 173 (198)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHHHHHH-HCT-TCCSCEEECBG
T ss_pred CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHHHHHH-HHh-cCCceEEEEec
Confidence 46789999987431 111110 01113345899999998654 333333332 222 344 8999999
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q 023354 258 KHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 258 ~~g~gi~~l~~~l~~~~~~ 276 (283)
++|.|+++++++|......
T Consensus 174 ~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 174 TEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp GGTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999876644
No 155
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.87 E-value=1.2e-09 Score=104.33 Aligned_cols=159 Identities=22% Similarity=0.202 Sum_probs=85.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC-CCChHHHHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP-HAAIREDISIN 158 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~-~~~~~~~~~~~ 158 (283)
++..|+|+|++|+|||||+|.|++...+. ......++.+.. ...+- +...+..+++++|.. ...
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~-----vs~~~gTT~d~~-~~~i~-~~g~~~~l~DTaG~~~~~~-------- 306 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI-----VTDIPGTTRDVI-SEEIV-IRGILFRIVDTAGVRSETN-------- 306 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCC-----CCCSSCCSSCSC-CEEEE-ETTEEEEEEESSCCCSSCC--------
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCc-----cCCCCCeeeeeE-EEEEe-cCCeEEEEEECCCccccch--------
Confidence 35789999999999999999999963211 111111111100 00000 001112344555542 100
Q ss_pred HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhc-CCc-ccccCEEEEEcCCcccccCChH
Q 023354 159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG-GPG-ITQADLLVINKTDLASAIGADL 236 (283)
Q Consensus 159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~-~~~-i~~ad~ivi~K~g~i~~~g~~~ 236 (283)
+ ..|.-|.+ +..-...-++.+|+|+|++......... ... -...-.+|+||+|+... ...
T Consensus 307 -------------~--~ve~~gi~-~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~--~~~ 368 (482)
T 1xzp_A 307 -------------D--LVERLGIE-RTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK--INE 368 (482)
T ss_dssp -------------T--TCCCCCHH-HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC--CCH
T ss_pred -------------h--hHHHHHHH-HHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccc--cCH
Confidence 0 01112211 2122233468899999987764322110 000 12345899999998643 122
Q ss_pred HHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354 237 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 237 e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
+.+.+. .....+++++||++|.|+++++++|.+.+
T Consensus 369 ~~~~~~---~~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 369 EEIKNK---LGTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp HHHHHH---HTCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred HHHHHH---hcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 222221 11236899999999999999999998753
No 156
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.87 E-value=2.3e-09 Score=88.83 Aligned_cols=84 Identities=19% Similarity=0.091 Sum_probs=53.7
Q ss_pred cCCcEEEEeCCCCCCchh---hc----CC-c--------ccccCEEEEEcCCcccccCChHHHHhHHH-Hh---hcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR---KG----GP-G--------ITQADLLVINKTDLASAIGADLAVMERDA-LR---MRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~----~~-~--------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~-~~---~~~~~~ 251 (283)
++.+|+++|++....+.. .. .. . -...-.||+||+|+.... ..+.+...+ .. .....+
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeE
Confidence 367899999887532211 00 00 0 034558999999987652 223232222 11 224568
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 252 FIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 252 i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
++.+|+++|.|+++++++|...+...
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 89999999999999999998877544
No 157
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.87 E-value=2.4e-09 Score=88.69 Aligned_cols=83 Identities=19% Similarity=0.111 Sum_probs=51.8
Q ss_pred cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..|+++|++.... +..... ..-...-.+|+||+|+........+........ .+.+++++|++++.|+
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE--HGLIFMETSAKTACNV 171 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEEECTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence 467899999876421 111100 001233488999999875432233333333222 2468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
++++++|......
T Consensus 172 ~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 172 EEAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999776543
No 158
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.86 E-value=1.9e-09 Score=88.35 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=51.3
Q ss_pred CCcEEEEeCCCCCC---chhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 193 DYIIYIIDVSGGDK---IPRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 193 ~~~l~llDpt~g~~---l~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
+..++++|++.... +.... .......-.+++||+|+........+....... ..+.+++.+|+++|.|++
T Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 84 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ--ENELMFLETSALTGENVE 161 (186)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH--HcCCEEEEecCCCCCCHH
Confidence 57899999876421 11110 001123458999999987543222232222222 245789999999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 265 EIVNHILQAWEA 276 (283)
Q Consensus 265 ~l~~~l~~~~~~ 276 (283)
++++++......
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 159
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.86 E-value=8.9e-09 Score=82.45 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=52.4
Q ss_pred cCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+... .+.... ...-..+-.+++||.|+........+.... ..+..+..+++++|+++|.|
T Consensus 75 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~g 153 (167)
T 1c1y_A 75 GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LARQWCNCAFLESSAKSKIN 153 (167)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHHTTSCEEEECBTTTTBS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH-HHHHccCCcEEEecCCCCCC
Confidence 57888999977632 111100 001123458999999997643223333333 23334467899999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAW 274 (283)
Q Consensus 263 i~~l~~~l~~~~ 274 (283)
+++++++|....
T Consensus 154 i~~l~~~l~~~i 165 (167)
T 1c1y_A 154 VNEIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997654
No 160
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.85 E-value=2.5e-09 Score=85.97 Aligned_cols=82 Identities=26% Similarity=0.195 Sum_probs=50.8
Q ss_pred cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++.... +..... ..-...-.+++||+|+.... ...+........ .+.+++++|+++|.|+
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 76 AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKE--LGIPFIESSAKNDDNV 152 (170)
T ss_dssp EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SCHHHHHHHHHH--HTCCEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-cCHHHHHHHHHH--cCCeEEEEECCCCCCH
Confidence 357899999876421 111100 00123448999999984322 222333322222 2468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
++++++|.....+
T Consensus 153 ~~l~~~l~~~~~~ 165 (170)
T 1g16_A 153 NEIFFTLAKLIQE 165 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 161
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.85 E-value=1.2e-08 Score=83.91 Aligned_cols=82 Identities=21% Similarity=0.194 Sum_probs=51.4
Q ss_pred CCcEEEEeCCCCCC---chhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 193 DYIIYIIDVSGGDK---IPRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 193 ~~~l~llDpt~g~~---l~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
+..++++|.+.... +... ....-...-.+|+||+|+.... ...+...+.... .+.+++.+|++++.|+
T Consensus 94 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 94 EGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-VDTKQAHELAKS--YGIPFIETSAKTRQGV 170 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCHHHHHHHHHH--HTCCEEECCTTTCTTH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-CCHHHHHHHHHH--cCCeEEEEeCCCCCCH
Confidence 57888999776421 1110 0000123458999999987532 222333333222 2458999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023354 264 EEIVNHILQAWEAS 277 (283)
Q Consensus 264 ~~l~~~l~~~~~~~ 277 (283)
++++++|...+...
T Consensus 171 ~~l~~~l~~~~~~~ 184 (190)
T 3con_A 171 EDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877543
No 162
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.85 E-value=2.9e-09 Score=100.26 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=50.9
Q ss_pred HHHhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 188 SRELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 188 a~al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
+..-++.+|+++|++.+....... .......-.+++||+|........ .+ ..+ ....+++.+||++|.|+
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~----~~-~~~-lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANI----YD-FYS-LGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CC----CS-SGG-GSSCCCEECBTTTTBTH
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhH----HH-HHH-cCCCCeEEEeCcCCCCh
Confidence 334568899999988764322110 011234558999999986432111 11 111 12237899999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
+++++++...++.
T Consensus 153 ~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 153 GDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHTGGG
T ss_pred HHHHHHHHHhcCc
Confidence 9999999887753
No 163
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.85 E-value=1.5e-09 Score=86.59 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=48.6
Q ss_pred cCCcEEEEeCCCCCCchh-hcC---CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPR-KGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 267 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~-~~~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~ 267 (283)
++..++++|++....... ... .....+-.+|+||+|+.... +...+. . .....+++++|+++|.|+++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~~~-~-~~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE----LYLGPL-Y-GLGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG----GGCGGG-G-GGSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch----HhHHHH-H-hCCCCCeEEEecccCCChHHHH
Confidence 357899999877532211 100 00134458999999987542 111111 1 2223378999999999999999
Q ss_pred HHHHHHH
Q 023354 268 NHILQAW 274 (283)
Q Consensus 268 ~~l~~~~ 274 (283)
+++.+.+
T Consensus 154 ~~l~~~l 160 (161)
T 2dyk_A 154 EAIWERL 160 (161)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9987653
No 164
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.85 E-value=6.4e-09 Score=85.65 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=52.2
Q ss_pred cCCcEEEEeCCCCCCchh---h---c-CC--cccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDKIPR---K---G-GP--GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~---~-~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~ 259 (283)
++..++++|++....+.. . . .. .....-.+|+||.|+... ...+.+.+.+... ..+.+++++||++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 468899999887643221 0 0 00 113345899999998753 2233333322211 1345789999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAWE 275 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~ 275 (283)
|.|+++++++|.+...
T Consensus 162 g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLK 177 (187)
T ss_dssp TBTHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987664
No 165
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.85 E-value=4.1e-09 Score=86.55 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=51.5
Q ss_pred CCcEEEEeCCCCCCchh---hc----CC--cccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccC
Q 023354 193 DYIIYIIDVSGGDKIPR---KG----GP--GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHG 260 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~~---~~----~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g 260 (283)
+..++++|.+....+.. .. .. ....+-.+|+||.|+... ...+.+.+.+... ....+++++|+++|
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTG 164 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCC
Confidence 57899999876532211 00 00 112345899999998764 2223332222111 23457899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWEA 276 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~~ 276 (283)
.|+++++++|.....+
T Consensus 165 ~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 165 EDLLPGIDWLLDDISS 180 (186)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999876643
No 166
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.85 E-value=1.3e-08 Score=84.42 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=53.5
Q ss_pred hcCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354 191 LADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL 261 (283)
Q Consensus 191 l~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~ 261 (283)
-++..++++|++... .+.... ......+-.+|+||.|+........+........ .+.+++++|+++|.
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE--LACAFYECSACTGE 175 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTSEEEECCTTTCT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH--hCCeEEEECCCcCC
Confidence 357889999987632 111100 0011234589999999876432233333332222 25689999999999
Q ss_pred -CHHHHHHHHHHHHHHh
Q 023354 262 -GVEEIVNHILQAWEAS 277 (283)
Q Consensus 262 -gi~~l~~~l~~~~~~~ 277 (283)
|+++++++|.......
T Consensus 176 ~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 176 GNITEIFYELCREVRRR 192 (196)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 9999999998876543
No 167
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.84 E-value=7.8e-09 Score=84.61 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=51.8
Q ss_pred cCCcEEEEeCCCCCCc---hhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI---PRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+....+ ... .......+-.+|+||.|+.... ...+........ .+.+++++|+++|.|
T Consensus 76 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~g~g 152 (189)
T 4dsu_A 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-VDTKQAQDLARS--YGIPFIETSAKTRQG 152 (189)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-SCHHHHHHHHHH--HTCCEEECCTTTCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc-cCHHHHHHHHHH--cCCeEEEEeCCCCCC
Confidence 5788999998764211 110 0011123458999999987442 222333332222 246899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWEA 276 (283)
Q Consensus 263 i~~l~~~l~~~~~~ 276 (283)
+++++++|...+..
T Consensus 153 i~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 153 VDDAFYTLVREIRK 166 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 168
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.84 E-value=9.4e-11 Score=103.43 Aligned_cols=82 Identities=29% Similarity=0.267 Sum_probs=51.8
Q ss_pred cCCcEEEEeCCCCCCchhhcC--Cccc-ccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRKGG--PGIT-QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN 268 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~~--~~i~-~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~ 268 (283)
++.+++++|+++......... .... .+..+++||.|+....+...+ ...+.+ ..+.|++++|+++|.|++++++
T Consensus 82 ~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~--~~~l~~-~lg~~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 82 ADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKID--IKKMRK-ELGVPVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCC--HHHHHH-HHSSCEEECBGGGTBTHHHHHH
T ss_pred CcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHH--HHHHHH-HcCCcEEEEEeCCCCCHHHHHH
Confidence 467889999877521110000 0012 456899999997654332221 112222 2357899999999999999999
Q ss_pred HHHHHHHH
Q 023354 269 HILQAWEA 276 (283)
Q Consensus 269 ~l~~~~~~ 276 (283)
++......
T Consensus 159 ~i~~~~~~ 166 (271)
T 3k53_A 159 MIALMAEG 166 (271)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99887653
No 169
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.84 E-value=2.6e-09 Score=88.23 Aligned_cols=83 Identities=18% Similarity=0.119 Sum_probs=52.2
Q ss_pred cCCcEEEEeCCCCCC---chhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++.... +...... .-...-.+|+||+|+........+...+.... .+.+++++|+++|.|+
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADD--LGFEFFEASAKENINV 172 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHH--cCCeEEEEECCCCCCH
Confidence 357889999876421 1111000 01234489999999876432233333333222 2468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
++++++|.....+
T Consensus 173 ~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 173 KQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
No 170
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.84 E-value=7.8e-09 Score=86.15 Aligned_cols=82 Identities=18% Similarity=0.102 Sum_probs=51.0
Q ss_pred cCCcEEEEeCCCCCCc---hhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKI---PRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..|+++|.+....+ ..... ..-...-.+|+||+|+........+........ .+.+++.+|+++|.|+
T Consensus 81 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 81 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINV 158 (203)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH--HTCEEEECBTTTTBSS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHH--CCCeEEEEECCCCCCH
Confidence 3678999998764221 11000 001234589999999875432233333332222 2468999999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWE 275 (283)
Q Consensus 264 ~~l~~~l~~~~~ 275 (283)
++++++|.....
T Consensus 159 ~~l~~~l~~~i~ 170 (203)
T 1zbd_A 159 KQTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 171
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.83 E-value=1.5e-09 Score=90.88 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=52.3
Q ss_pred cCCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++.+|+++|++....+. .... ..-...-.+|+||.|+........+....... ..+.+++++|+++|.|+
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD--ANKMPFLETSALDSTNV 158 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH--HTTCCEEECCTTTCTTH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH--HcCCeEEEEeCCCCCCH
Confidence 35789999987742211 1000 00123348999999997543223333333222 24578999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
++++++|......
T Consensus 159 ~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 159 EDAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876643
No 172
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.83 E-value=3e-09 Score=101.01 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=51.0
Q ss_pred cCCcEEEEeCCCCCCchhh-cCCc-ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRK-GGPG-ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~-~~~~-i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
+|.+++++|++........ .... -.....+|+||+|+....... .+.......+++.+|+++|.|+++++++
T Consensus 304 aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~------~~~~~~~~~~~i~iSAktg~Gi~eL~~~ 377 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLIT------SLEYPENITQIVHTAAAQKQGIDSLETA 377 (462)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGST------TCCCCTTCCCEEEEBTTTTBSHHHHHHH
T ss_pred CCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhH------HHHHhccCCcEEEEECCCCCCHHHHHHH
Confidence 3578999998875332111 0000 123568999999987552111 1111123568999999999999999999
Q ss_pred HHHHHHH
Q 023354 270 ILQAWEA 276 (283)
Q Consensus 270 l~~~~~~ 276 (283)
|.+.+..
T Consensus 378 i~~~~~~ 384 (462)
T 3geh_A 378 ILEIVQT 384 (462)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9887653
No 173
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.83 E-value=7.2e-10 Score=89.01 Aligned_cols=81 Identities=21% Similarity=0.117 Sum_probs=51.4
Q ss_pred cCCcEEEEeCCCCC---CchhhcCCc----ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 192 ADYIIYIIDVSGGD---KIPRKGGPG----ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 192 ~~~~l~llDpt~g~---~l~~~~~~~----i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
++..++++|++... .+....... ...+-.+|+||.|+........+........ .+.+++++|++++.|++
T Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 78 AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKR--LKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHH--HTCEEEECBTTTTBSSH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHH--cCCeEEEEecCCCCCHH
Confidence 46789999987642 111110000 1345589999999876432223333332222 24689999999999999
Q ss_pred HHHHHHHHHH
Q 023354 265 EIVNHILQAW 274 (283)
Q Consensus 265 ~l~~~l~~~~ 274 (283)
+++++|....
T Consensus 156 ~l~~~l~~~~ 165 (168)
T 1z2a_A 156 EVFKYLAEKH 165 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997654
No 174
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.83 E-value=4e-09 Score=85.48 Aligned_cols=81 Identities=22% Similarity=0.223 Sum_probs=50.8
Q ss_pred cCCcEEEEeCCCCCC---chhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..++++|++.... +...... .-...-.+|+||.|+........+........ .+.+++.+|++++.|+
T Consensus 87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 87 STVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE--LNVMFIETSAKAGYNV 164 (179)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH--HTCEEEEEBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHH--cCCeEEEEeCCCCCCH
Confidence 467899999876321 1111000 01223489999999875433233333333322 2468999999999999
Q ss_pred HHHHHHHHHHH
Q 023354 264 EEIVNHILQAW 274 (283)
Q Consensus 264 ~~l~~~l~~~~ 274 (283)
++++++|...+
T Consensus 165 ~~l~~~l~~~~ 175 (179)
T 2y8e_A 165 KQLFRRVAAAL 175 (179)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99999997654
No 175
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.83 E-value=2e-09 Score=92.30 Aligned_cols=58 Identities=17% Similarity=0.077 Sum_probs=43.8
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHhcccC--C-CcEEEEeecCCCCCHHHHHHhccccCCchHH
Q 023354 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR 139 (283)
Q Consensus 78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~ 139 (283)
..+|++++|+||||||||||+++|+|+++| . |.|.+.+.++.. ..+..++|+||.+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~ 73 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDE 73 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHH
Confidence 467999999999999999999999999885 3 777776655432 123468999997643
No 176
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.82 E-value=3.6e-09 Score=87.29 Aligned_cols=82 Identities=21% Similarity=0.202 Sum_probs=49.4
Q ss_pred cCCcEEEEeCCCCC---Cchhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC--
Q 023354 192 ADYIIYIIDVSGGD---KIPRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG-- 260 (283)
Q Consensus 192 ~~~~l~llDpt~g~---~l~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g-- 260 (283)
++..|+++|++... .+... ........-.+|+||+|+........+....... ..+.+++++|++++
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~~Sa~~~~~ 171 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD--THSMPLFETSAKNPND 171 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH--HTTCCEEECCSSSGGG
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH--HcCCEEEEEeCCcCCc
Confidence 46889999987642 11111 0001123458999999987543223333332222 24568999999999
Q ss_pred -CCHHHHHHHHHHHHH
Q 023354 261 -LGVEEIVNHILQAWE 275 (283)
Q Consensus 261 -~gi~~l~~~l~~~~~ 275 (283)
.|+++++++|...+.
T Consensus 172 ~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 172 NDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GSCHHHHHHHHC----
T ss_pred ccCHHHHHHHHHHHHh
Confidence 999999999876543
No 177
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.82 E-value=3.4e-09 Score=85.38 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=52.0
Q ss_pred cCCcEEEEeCCCCCCchh---hc----CC--cccccCEEEEEcCCcccccCChHHHHhHHHHh-h--cCCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDKIPR---KG----GP--GITQADLLVINKTDLASAIGADLAVMERDALR-M--RDGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~----~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~-~--~~~~~i~~isa~~ 259 (283)
++..++++|++....+.. .. .. .....-.+|+||.|+... ...+.+...+.. . ....+++++|+++
T Consensus 75 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 75 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANSLGLPALKDRKWQIFKTSATK 152 (171)
T ss_dssp CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHHhCchhccCCceEEEECcCCC
Confidence 367899999877543221 10 00 013345899999998754 222333332211 1 1244789999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAWEA 276 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~~ 276 (283)
|.|+++++++|......
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 153 GTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999877643
No 178
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.82 E-value=1e-08 Score=91.28 Aligned_cols=59 Identities=8% Similarity=-0.038 Sum_probs=45.5
Q ss_pred CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C-cEEEEeecCCCCCHHHHHHhcc
Q 023354 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNG 131 (283)
Q Consensus 70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g-~i~i~~~d~~~~~~~~~~~~ig 131 (283)
+.++++++. .+|++++|+||||||||||++.|++.+.+. | .+.+.+.+. ...++++++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~ 84 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLI 84 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHH
Confidence 467777776 459999999999999999999999998876 7 787777654 2344444443
No 179
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.82 E-value=1.9e-09 Score=90.31 Aligned_cols=58 Identities=22% Similarity=0.151 Sum_probs=41.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRA 140 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~ 140 (283)
+|++++|+||||||||||+++|+|+++ .+.+.+.+.........+..++|++|++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRF 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHH
Confidence 699999999999999999999999864 4555444443322222245688999886533
No 180
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.31 E-value=4.4e-10 Score=94.11 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=24.7
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354 74 SRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 74 ~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g 103 (283)
...+..+...|+|+|++|+|||||++.+++
T Consensus 23 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 334445677899999999999999999976
No 181
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.81 E-value=6.5e-09 Score=83.22 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=49.7
Q ss_pred cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhh-c--CCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDALRM-R--DGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~-~--~~~~i~~isa~~ 259 (283)
++..++++|.+....+.. .. . ..-..+-.+++||.|+... ...+.+....... . ...+++++|+++
T Consensus 68 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 145 (164)
T 1r8s_A 68 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATS 145 (164)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCC
Confidence 357899999876532211 10 0 0012345899999998654 2222222222111 1 234689999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAWE 275 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~ 275 (283)
|.|+++++++|.....
T Consensus 146 ~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 146 GDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TBTHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999987653
No 182
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.81 E-value=2.2e-09 Score=89.60 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=51.7
Q ss_pred cCCcEEEEeCCCCCC---chhhc-------C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDK---IPRKG-------G--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~-------~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~ 259 (283)
++..|+++|++.... +.... . ......-.+|+||.|+.... ...+.... +.......+++.+||++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~-~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKRAQA-WCYSKNNIPYFETSAKE 158 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHHHHH-HHHHTTSCCEEECBTTT
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cCHHHHHH-HHHhcCCceEEEEeCCC
Confidence 367899999876421 11100 0 00123458999999987322 22233322 22324567899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAWE 275 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~ 275 (283)
|.|+++++++|.....
T Consensus 159 g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 159 AINVEQAFQTIARNAL 174 (207)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
No 183
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.81 E-value=6.7e-09 Score=86.67 Aligned_cols=56 Identities=23% Similarity=0.155 Sum_probs=38.7
Q ss_pred cCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 218 ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.-.+++||.|+........+..... ...+..+++.+|++++.|+++++++|.....
T Consensus 112 ~i~~v~nK~Dl~~~~~~~~~~a~~l--~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 112 VIMLVGNKSDLRHLRAVPTDEARAF--AEKNNLSFIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHH--HHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEEECcccccccCcCHHHHHHH--HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3478899999865432232322222 2235677888999999999999999987654
No 184
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.81 E-value=1e-09 Score=90.19 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=50.0
Q ss_pred cCCcEEEEeCCCCCCchhhcC--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRKGG--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
++.+++++|+++......... .....+-.++.||.|+....... +... .+.+. .+.+++++|++++.|+++++++
T Consensus 86 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~-~~~~~-~~~~~~~~Sa~~~~~v~~l~~~ 162 (188)
T 2wjg_A 86 PDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE-IDVD-KLEKI-LGVKVVPLSAAKKMGIEELKKA 162 (188)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCC-CCHH-HHHHH-HTSCEEECBGGGTBSHHHHHHH
T ss_pred CCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccch-HHHH-HHHHH-hCCCeEEEEecCCCCHHHHHHH
Confidence 467788888775322111000 00123458899999986542211 1111 11222 2468999999999999999999
Q ss_pred HHHHHHHh
Q 023354 270 ILQAWEAS 277 (283)
Q Consensus 270 l~~~~~~~ 277 (283)
+.......
T Consensus 163 i~~~~~~~ 170 (188)
T 2wjg_A 163 ISIAVKDK 170 (188)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhc
Confidence 98876543
No 185
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.80 E-value=1.1e-08 Score=84.11 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=49.7
Q ss_pred cCCcEEEEeCCCCCCchh---h---cCC---cccccCEEEEEcCCcccccCChHHHHhHHHHh-h--cCCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDKIPR---K---GGP---GITQADLLVINKTDLASAIGADLAVMERDALR-M--RDGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~---~~~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~-~--~~~~~i~~isa~~ 259 (283)
++..++++|.+....+.. . ... ....+-.++.||+|+.... ..+.+.+.+.. . ....+++++||++
T Consensus 84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCC
Confidence 467899999876432211 1 000 1123458999999987542 22222222111 1 1234689999999
Q ss_pred CCCHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAW 274 (283)
Q Consensus 260 g~gi~~l~~~l~~~~ 274 (283)
|.|+++++++|....
T Consensus 162 g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNV 176 (181)
T ss_dssp CTTHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997654
No 186
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.80 E-value=9.9e-10 Score=97.32 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=49.2
Q ss_pred cCCcEEEEeCCCCCCchhhc--CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~--~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
++.+++++|+++........ ......+-.+++||.|+....+...+ . ..+.+. .+.|++++||++|.|+++++++
T Consensus 81 ~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~-~-~~l~~~-lg~~vi~~SA~~g~gi~el~~~ 157 (272)
T 3b1v_A 81 ADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKIN-V-DKLSYH-LGVPVVATSALKQTGVDQVVKK 157 (272)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCC-H-HHHHHH-HTSCEEECBTTTTBSHHHHHHH
T ss_pred CCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHH-H-HHHHHH-cCCCEEEEEccCCCCHHHHHHH
Confidence 45688899987632111100 00013455899999998754332211 1 111111 2568999999999999999999
Q ss_pred HHHHH
Q 023354 270 ILQAW 274 (283)
Q Consensus 270 l~~~~ 274 (283)
+....
T Consensus 158 i~~~~ 162 (272)
T 3b1v_A 158 AAHTT 162 (272)
T ss_dssp HHHSC
T ss_pred HHHHH
Confidence 97754
No 187
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.80 E-value=1.9e-09 Score=88.05 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=51.3
Q ss_pred CCcEEEEeCCCCCCchh---h---cCC---cccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccC
Q 023354 193 DYIIYIIDVSGGDKIPR---K---GGP---GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHG 260 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~~---~---~~~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g 260 (283)
+..++++|++....+.. . ... .....-.+++||.|+... ...+.+.+.+... ....+++++|+++|
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (183)
T 1moz_A 87 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKG 164 (183)
T ss_dssp EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 57899999876533221 0 000 123345899999998654 2223332222111 12347899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWEA 276 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~~ 276 (283)
.|+++++++|......
T Consensus 165 ~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 165 EGITEGLDWLIDVIKE 180 (183)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999887654
No 188
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.80 E-value=1.3e-08 Score=81.03 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=51.3
Q ss_pred hcCCcEEEEeCCCCCCch---hh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354 191 LADYIIYIIDVSGGDKIP---RK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL 261 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~---~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~ 261 (283)
-++..++++|++....+. .. ........-.+++||.|+.... ...+...+.... .+.+++.+|++++.
T Consensus 74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-VESRQAQDLARS--YGIPYIETSAKTRQ 150 (166)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCHHHHHHHHHH--HTCCEEEECTTTCT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-cCHHHHHHHHHH--cCCeEEEecCCCCC
Confidence 357888999987542111 00 0000123458999999987632 222333332222 24689999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023354 262 GVEEIVNHILQAWE 275 (283)
Q Consensus 262 gi~~l~~~l~~~~~ 275 (283)
|+++++++|.....
T Consensus 151 gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 151 GVEDAFYTLVREIR 164 (166)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 189
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.80 E-value=1.2e-09 Score=95.81 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=50.6
Q ss_pred cCCcEEEEeCCCCCC---chhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN 268 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~ 268 (283)
++.+|+++|+++... +.... ..+..+-.+++||.|.....+.... . ..+.+. .+.|++++||++|.|++++++
T Consensus 84 ~d~vi~VvDas~~~~~~~l~~~l-~~~~~pvilv~NK~Dl~~~~~~~~~-~-~~l~~~-lg~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 84 YDCIINVIDACHLERHLYLTSQL-FELGKPVVVALNMMDIAEHRGISID-T-EKLESL-LGCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHH-TTSCSCEEEEEECHHHHHHTTCEEC-H-HHHHHH-HCSCEEECBGGGTBSHHHHHH
T ss_pred CCEEEEEeeCCCchhHHHHHHHH-HHcCCCEEEEEEChhcCCcCCcHHH-H-HHHHHH-cCCCEEEEECCCCCCHHHHHH
Confidence 467899999876311 11111 1124556899999998765433221 1 122222 257999999999999999999
Q ss_pred HHHHH
Q 023354 269 HILQA 273 (283)
Q Consensus 269 ~l~~~ 273 (283)
++...
T Consensus 160 ~i~~~ 164 (256)
T 3iby_A 160 SLLHC 164 (256)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 99764
No 190
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.79 E-value=2.2e-08 Score=82.79 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=51.2
Q ss_pred hcCCcEEEEeCCCCC---Cchhh-------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354 191 LADYIIYIIDVSGGD---KIPRK-------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG 260 (283)
Q Consensus 191 l~~~~l~llDpt~g~---~l~~~-------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g 260 (283)
-++..++++|++... .+... ........-.+|+||.|+....- ..+........ .+.+++++||++|
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~--~~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 79 KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREV-DTREAQAVAQE--WKCAFMETSAKMN 155 (199)
T ss_dssp HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSS-CHHHHHHHHHH--HTCEEEECBTTTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcccc-CHHHHHHHHHH--hCCeEEEEecCCC
Confidence 357889999987632 11110 00011234589999999875322 22222222222 2467899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWE 275 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~ 275 (283)
.|+++++++|...+.
T Consensus 156 ~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 156 YNVKELFQELLTLET 170 (199)
T ss_dssp BSHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988654
No 191
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.79 E-value=2.3e-09 Score=88.63 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=51.2
Q ss_pred cCCcEEEEeCCCCCCchh---hc-----CCc---ccccCEEEEEcCCcccccCChHHHHhHHHH-hhc--CCCCeEEEEe
Q 023354 192 ADYIIYIIDVSGGDKIPR---KG-----GPG---ITQADLLVINKTDLASAIGADLAVMERDAL-RMR--DGGPFIFAQV 257 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~-----~~~---i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~~--~~~~i~~isa 257 (283)
++.+++++|.+....+.. .. ... ....-.+|+||+|+... ...+.+.+.+. ... .+.+++.+|+
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccC
Confidence 467899999876421111 00 000 13345899999999754 23333333332 221 2557899999
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q 023354 258 KHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 258 ~~g~gi~~l~~~l~~~~~~ 276 (283)
++|.|+++++++|......
T Consensus 169 ~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTBTHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999876643
No 192
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=1e-08 Score=84.39 Aligned_cols=82 Identities=23% Similarity=0.135 Sum_probs=51.0
Q ss_pred cCCcEEEEeCCCCC---Cchh---hcCCc---ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGD---KIPR---KGGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~---~l~~---~~~~~---i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++.+|+++|++... .+.. ..... -...-.+|+||.|+....- ..+........ .+.+++++|++++.|
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~--~~~~~~~~Sa~~~~g 164 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREV-DRNEGLKFARK--HSMLFIEASAKTCDG 164 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCS-CHHHHHHHHHH--TTCEEEECCTTTCTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCccccc-CHHHHHHHHHH--cCCEEEEecCCCCCC
Confidence 46789999987642 1111 11000 1234479999999843321 22222222222 356889999999999
Q ss_pred HHHHHHHHHHHHHH
Q 023354 263 VEEIVNHILQAWEA 276 (283)
Q Consensus 263 i~~l~~~l~~~~~~ 276 (283)
+++++++|...+..
T Consensus 165 i~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 165 VQCAFEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 193
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.78 E-value=6.4e-09 Score=85.04 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=46.4
Q ss_pred CCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 193 DYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
+..++++|++....+. .... ..-...-.+|+||.|+........+........ .+.+++++|+++|.|++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 82 MGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALD--YGIKFMETSAKANINVE 159 (183)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH--HTCEEEECCC---CCHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHH--cCCeEEEEeCCCCCCHH
Confidence 5789999987642211 1000 001234489999999865422223333333222 24689999999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 265 EIVNHILQAWEA 276 (283)
Q Consensus 265 ~l~~~l~~~~~~ 276 (283)
+++++|......
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999876643
No 194
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.78 E-value=4.4e-09 Score=88.14 Aligned_cols=82 Identities=27% Similarity=0.196 Sum_probs=50.4
Q ss_pred cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++.+++++|++.... +..... ......-.+|+||+|+.... ...+........ .+.+++++|++++.|+
T Consensus 93 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 93 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKE--LGIPFIESSAKNDDNV 169 (213)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-SCHHHHHHHHHH--HTCCEEECBTTTTBSS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-cCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence 467899999876421 111100 00123448999999983221 222333222222 2468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
++++++|...+..
T Consensus 170 ~~l~~~l~~~~~~ 182 (213)
T 3cph_A 170 NEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876644
No 195
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.77 E-value=1.3e-08 Score=95.89 Aligned_cols=162 Identities=19% Similarity=0.102 Sum_probs=81.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHHH
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP 161 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~ 161 (283)
++|+|+|.+|+|||||+|.|++.- ..+....++.+.+.. ..........+.+++++|......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~-----~~~v~~~~g~T~d~~--~~~~~~~~~~~~l~DT~G~~~~~~---------- 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKK-----KAIVEDEEGVTRDPV--QDTVEWYGKTFKLVDTCGVFDNPQ---------- 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------CCS--EEEEEETTEEEEEEECTTTTSSGG----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----CceecCCCCCcccee--eEEEEECCeEEEEEECCCcccccc----------
Confidence 479999999999999999999842 122222122111100 000000111123455666422100
Q ss_pred HHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchh-hcCCc---ccccCEEEEEcCCcccccCChHH
Q 023354 162 LEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR-KGGPG---ITQADLLVINKTDLASAIGADLA 237 (283)
Q Consensus 162 l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~-~~~~~---i~~ad~ivi~K~g~i~~~g~~~e 237 (283)
..+ ....+.....+..-+|.+++|+|.+.+..... ..... ....-.+++||+|.... ...
T Consensus 65 -------~~~------~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~---~~~ 128 (439)
T 1mky_A 65 -------DII------SQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE---FER 128 (439)
T ss_dssp -------GCC------CHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH---HHH
T ss_pred -------chH------HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc---cHH
Confidence 000 00012222333344678999999877642211 00000 12345899999997532 011
Q ss_pred HHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 238 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 238 ~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
....... .....+++.+||++|.|++++++++...++..
T Consensus 129 ~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 129 EVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp HTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 1101111 22333789999999999999999998877643
No 196
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.77 E-value=2.5e-09 Score=85.81 Aligned_cols=80 Identities=21% Similarity=0.104 Sum_probs=48.4
Q ss_pred cCCcEEEEeCCCCCCc---hhhcC-----CcccccCEEEEEcCCcccccC---ChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354 192 ADYIIYIIDVSGGDKI---PRKGG-----PGITQADLLVINKTDLASAIG---ADLAVMERDALRMRDGGPFIFAQVKHG 260 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~~~-----~~i~~ad~ivi~K~g~i~~~g---~~~e~~~~~~~~~~~~~~i~~isa~~g 260 (283)
++..++++|++....+ ..... ..-...-.+++||.|+..... -..+........ .+.+++++|+++|
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~ 153 (170)
T 1ek0_A 76 AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE--KGLLFFETSAKTG 153 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH--HTCEEEECCTTTC
T ss_pred CcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHH--cCCEEEEEeCCCC
Confidence 4678999998764211 11000 001233478999999876421 112222222221 3568999999999
Q ss_pred CCHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQA 273 (283)
Q Consensus 261 ~gi~~l~~~l~~~ 273 (283)
.|+++++++|...
T Consensus 154 ~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 154 ENVNDVFLGIGEK 166 (170)
T ss_dssp TTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998754
No 197
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.77 E-value=2.2e-09 Score=89.37 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=50.6
Q ss_pred hcCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEec
Q 023354 191 LADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVK 258 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~ 258 (283)
-++..++++|.+....+.. .. . ..-..+-.+|+||+|+... ...+.+...+... ....+++++||+
T Consensus 96 ~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~ 173 (192)
T 2b6h_A 96 NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCAT 173 (192)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCC
Confidence 3578899999877532221 00 0 0012345899999998654 2223332222111 123468999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 023354 259 HGLGVEEIVNHILQAW 274 (283)
Q Consensus 259 ~g~gi~~l~~~l~~~~ 274 (283)
+|.|+++++++|....
T Consensus 174 ~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 174 QGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTBTHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHH
Confidence 9999999999997654
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.77 E-value=3.4e-09 Score=99.66 Aligned_cols=165 Identities=21% Similarity=0.282 Sum_probs=92.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCC---hHHH
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA---IRED 154 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~---~~~~ 154 (283)
.++.+++++|++||||||++..|+..+.+. +++.+++.|+......+.....+ ...+.+... ....
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~----------~~~gv~~~~~~~~~dp 164 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLG----------NQIGVQVYGEPNNQNP 164 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHH----------HTTTCCEECCTTCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHH----------HhcCCceeeccccCCH
Confidence 357899999999999999999999988876 78999998875422111111100 111111110 0001
Q ss_pred HHHHHHHHHHccccccCCCcccCCch----------HHHHHHHHHHhc-CCcEEEEeCCCCCCchhh---cCCcccccCE
Q 023354 155 ISINLGPLEELSNLFKADLLLCESGG----------DNLAANFSRELA-DYIIYIIDVSGGDKIPRK---GGPGITQADL 220 (283)
Q Consensus 155 ~~~~~~~l~~l~~~~~~d~~i~eSgG----------q~q~~~ia~al~-~~~l~llDpt~g~~l~~~---~~~~i~~ad~ 220 (283)
.......+..+ ....+|.++.++.| ..+...+.+++. +.+++++|++++.+.... +...+ -..-
T Consensus 165 ~~i~~~al~~a-~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-~~~g 242 (433)
T 3kl4_A 165 IEIAKKGVDIF-VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-PIGS 242 (433)
T ss_dssp HHHHHHHHHHT-TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-SSEE
T ss_pred HHHHHHHHHHH-HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-CCcE
Confidence 11122344443 23467777777444 223344445544 478999999887543221 11111 2468
Q ss_pred EEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 221 LVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 221 ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
||+||.|.-...|....... ..+.|+.+++. |+++
T Consensus 243 VIlTKlD~~a~~G~als~~~------~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 243 VIITKMDGTAKGGGALSAVV------ATGATIKFIGT--GEKI 277 (433)
T ss_dssp EEEECGGGCSCHHHHHHHHH------HHTCEEEEEEC--CSSS
T ss_pred EEEecccccccchHHHHHHH------HHCCCEEEEEC--CCCh
Confidence 99999997644332222221 13678888874 6654
No 199
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.77 E-value=2.1e-08 Score=81.53 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=51.1
Q ss_pred cCCcEEEEeCCCCCC---chh---hc----C-CcccccCEEEEEcCCcccc--cCChHHHHhHHHHhhcCCCCeEEEEec
Q 023354 192 ADYIIYIIDVSGGDK---IPR---KG----G-PGITQADLLVINKTDLASA--IGADLAVMERDALRMRDGGPFIFAQVK 258 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~---~~----~-~~i~~ad~ivi~K~g~i~~--~g~~~e~~~~~~~~~~~~~~i~~isa~ 258 (283)
++..++++|.+.... +.. .. . ..-..+-.+|.||.|+... .....+...+ +.....+.+++++||+
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~-~~~~~~~~~~~~~Sa~ 151 (178)
T 2iwr_A 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARA-LXADMKRCSYYETXAT 151 (178)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHH-HHHHHSSEEEEEEBTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHH-HHHhhcCCeEEEEecc
Confidence 578899999876421 111 00 0 0012345789999998421 1112232222 2223345689999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 023354 259 HGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 259 ~g~gi~~l~~~l~~~~~~ 276 (283)
+|.|++++++++......
T Consensus 152 ~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 152 YGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999876543
No 200
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.76 E-value=3.8e-09 Score=92.68 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=51.8
Q ss_pred cCCcEEEEeCCCCCCchhhc--CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~--~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
++.+++++|+++........ ......+-.+++||.|.....+...+ . ..+.+ ..+.|++++||++|.|+++++++
T Consensus 84 ~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~-~-~~l~~-~lg~~vi~~SA~~g~gi~el~~~ 160 (258)
T 3a1s_A 84 ADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKID-R-YELQK-HLGIPVVFTSSVTGEGLEELKEK 160 (258)
T ss_dssp CSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBC-H-HHHHH-HHCSCEEECCTTTCTTHHHHHHH
T ss_pred CCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHH-H-HHHHH-HcCCCEEEEEeeCCcCHHHHHHH
Confidence 46789999988753211100 00113456899999998755432221 1 11222 23579999999999999999999
Q ss_pred HHHHHH
Q 023354 270 ILQAWE 275 (283)
Q Consensus 270 l~~~~~ 275 (283)
+.....
T Consensus 161 i~~~~~ 166 (258)
T 3a1s_A 161 IVEYAQ 166 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987654
No 201
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.75 E-value=2.3e-09 Score=89.34 Aligned_cols=101 Identities=22% Similarity=0.223 Sum_probs=50.6
Q ss_pred CcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhc------CC--cccccCEEEEEcCCccc-ccCChHH
Q 023354 173 LLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKG------GP--GITQADLLVINKTDLAS-AIGADLA 237 (283)
Q Consensus 173 ~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~------~~--~i~~ad~ivi~K~g~i~-~~g~~~e 237 (283)
..++++.|+.....+.... ++..|+++|++....+ .... .. .....-.+|+||+|+.. ...-..+
T Consensus 75 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~ 154 (208)
T 2yc2_C 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD 154 (208)
T ss_dssp EEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH
T ss_pred EEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH
Confidence 3445566655443443333 2578999998775221 1110 00 01234489999999876 3222233
Q ss_pred HHhHHHHhhcCCCCeEEEEecc-CCCHHHHHHHHHHHHH
Q 023354 238 VMERDALRMRDGGPFIFAQVKH-GLGVEEIVNHILQAWE 275 (283)
Q Consensus 238 ~~~~~~~~~~~~~~i~~isa~~-g~gi~~l~~~l~~~~~ 275 (283)
........ .+.+++++|+++ +.|+++++++|.....
T Consensus 155 ~~~~~~~~--~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 155 MAQDWATT--NTLDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp HHHHHHHH--TTCEEEECCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 33333322 246899999999 9999999999987553
No 202
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.75 E-value=1.3e-08 Score=86.02 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=50.1
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccC------------ChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g------------~~~e~~~~~~~~~~~~~~ 251 (283)
++..++++|++....+.. ..... -...-.+|+||+|+..... -..+... .+.+.....+
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~ 184 (214)
T 2j1l_A 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQ-EMARSVGAVA 184 (214)
T ss_dssp EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHH-HHHHHTTCSE
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHH-HHHHhcCCCE
Confidence 357899999876422111 00000 0234588999999875421 0111111 1222223348
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 252 FIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 252 i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
++++||++|.|+++++++|......
T Consensus 185 ~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 185 YLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999877654
No 203
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.75 E-value=1.9e-09 Score=91.13 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=51.7
Q ss_pred cCCcEEEEeCCCCC---CchhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGD---KIPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~---~l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++..|+++|.+... ++...... .-...-.+|+||+|+........+.... .....+.+++.+||++|.|+
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVME--VLKGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHH--HTTTCCCEEEEEBTTTTBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH--HHHHcCCcEEEEecCCCCCH
Confidence 46789999988752 22111000 0023458999999986542222222221 22234678999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023354 264 EEIVNHILQAWEAS 277 (283)
Q Consensus 264 ~~l~~~l~~~~~~~ 277 (283)
++++++|...+...
T Consensus 163 ~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 163 GLPFLHLARIFTGR 176 (218)
T ss_dssp THHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887543
No 204
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.75 E-value=3.1e-09 Score=88.08 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=50.5
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCccccc--CChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI--GADLAVMERDALRMRDGGPFIFAQVKHGL 261 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~--g~~~e~~~~~~~~~~~~~~i~~isa~~g~ 261 (283)
++..++++|.+....+.. ..... -...-.+|+||+|+.... ....+...... +.....+++++||++|.
T Consensus 95 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-QKLGCVAYIEASSVAKI 173 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-HHHTCSCEEECBTTTTB
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHH-HhcCCCEEEEeecCCCC
Confidence 357889999876422111 00000 023458999999987431 12223333222 22223339999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 023354 262 GVEEIVNHILQAWEA 276 (283)
Q Consensus 262 gi~~l~~~l~~~~~~ 276 (283)
|+++++++|......
T Consensus 174 gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 174 GLNEVFEKSVDCIFS 188 (194)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999876643
No 205
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.75 E-value=1.9e-09 Score=96.74 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=38.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEE---EeecCCCCCHHHHHHhccccCCch
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i---~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
..|++++|+||||||||||||+|+|+.+|+ |.|.+ .+.++.........+.+|+++|.+
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p 229 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTP 229 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECc
Confidence 468999999999999999999999999987 99988 666654332111123578888875
No 206
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.75 E-value=2.1e-08 Score=93.47 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=51.6
Q ss_pred cCCcEEEEeCCCCCCchh-h-cC---Cccc-ccCEEEEEcCCcccccCChHHHHhHHHHhhc-----CCCCeEEEEeccC
Q 023354 192 ADYIIYIIDVSGGDKIPR-K-GG---PGIT-QADLLVINKTDLASAIGADLAVMERDALRMR-----DGGPFIFAQVKHG 260 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~-~-~~---~~i~-~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~-----~~~~i~~isa~~g 260 (283)
+|..|+++|++.+..... . .. ..+. ..-.+++||.|++... ..+...+.+.+.. ...+++++||++|
T Consensus 99 ~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~--~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g 176 (403)
T 3sjy_A 99 MDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE--EALSQYRQIKQFTKGTWAENVPIIPVSALHK 176 (403)
T ss_dssp CSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH--HHHHHHHHHHHHHTTSTTTTCCEEECBTTTT
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH--HHHHHHHHHHHHHHhhCCCCCEEEEEECCCC
Confidence 478999999887642211 0 00 0011 1347899999987542 1222222232222 2578999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWE 275 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~ 275 (283)
.|+++|+++|....+
T Consensus 177 ~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 177 INIDSLIEGIEEYIK 191 (403)
T ss_dssp BSHHHHHHHHHHHSC
T ss_pred cChHHHHHHHHHhCC
Confidence 999999999987653
No 207
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.75 E-value=1.1e-09 Score=91.46 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=52.7
Q ss_pred cCCcEEEEeCCCCCCc---hhhc---C---CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI---PRKG---G---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~~---~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+....+ .... . .....+-.+|+||+|+........+........ .+.+++++|+++|.|
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 96 VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES--WGATFMESSARENQL 173 (201)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEECCTTCHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHH--hCCeEEEEeCCCCCC
Confidence 3678999998764211 1110 0 011234589999999875533333333322222 346899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 023354 263 VEEIVNHILQAWEAS 277 (283)
Q Consensus 263 i~~l~~~l~~~~~~~ 277 (283)
+++++++|...+...
T Consensus 174 v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 174 TQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876543
No 208
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.74 E-value=8.7e-09 Score=83.63 Aligned_cols=82 Identities=20% Similarity=0.046 Sum_probs=51.1
Q ss_pred cCCcEEEEeCCCCCCc---hhhcCCc-------cccc-CEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354 192 ADYIIYIIDVSGGDKI---PRKGGPG-------ITQA-DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG 260 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~~~~~-------i~~a-d~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g 260 (283)
++..++++|++....+ ....... -..+ -.+|+||.|+........+........ .+.+++++||++|
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 80 AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE--NGFSSHFVSAKTG 157 (178)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH--HTCEEEEECTTTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH--cCCcEEEEeCCCC
Confidence 4688999998764221 1110000 0123 367899999875432223333332222 2468999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWE 275 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~ 275 (283)
.|+++++++|.....
T Consensus 158 ~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 158 DSVFLCFQKVAAEIL 172 (178)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987664
No 209
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.74 E-value=5.2e-10 Score=103.03 Aligned_cols=62 Identities=16% Similarity=0.016 Sum_probs=45.8
Q ss_pred cccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC-Cc
Q 023354 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP-EE 136 (283)
Q Consensus 73 ~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~-q~ 136 (283)
..++|. .+|++++|+||||||||||+++|+|+++|+ |.|.+.+.. .......+..+++++ |+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~~~~~~~~~v~~v~~q~ 230 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--ELFLPDHPNHVHLFYPSE 230 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CCCCTTCSSEEEEECC--
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--ccCccccCCEEEEeecCc
Confidence 566776 459999999999999999999999999987 888887532 222212345678887 54
No 210
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.74 E-value=1.5e-08 Score=85.22 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+...|+|+|+.|+|||||++.+++..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999999853
No 211
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.74 E-value=4.8e-08 Score=81.45 Aligned_cols=84 Identities=19% Similarity=0.139 Sum_probs=52.8
Q ss_pred hcCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354 191 LADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL 261 (283)
Q Consensus 191 l~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~ 261 (283)
-++..|+++|.+... .+.... ......+-.+|.||+|+.....-..+........ .+.+++++||+++.
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~--~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT--LSCKHIETSAALHH 173 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH--TTCEEEEEBTTTTB
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH--hCCEEEEEcCCCCC
Confidence 357889999987632 111111 0001234579999999875432233333322222 34689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 023354 262 GVEEIVNHILQAWEA 276 (283)
Q Consensus 262 gi~~l~~~l~~~~~~ 276 (283)
|++++++++......
T Consensus 174 ~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 174 NTRELFEGAVRQIRL 188 (195)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999877654
No 212
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.74 E-value=3.4e-09 Score=86.53 Aligned_cols=84 Identities=15% Similarity=0.028 Sum_probs=52.4
Q ss_pred cCCcEEEEeCCCCCCc---hhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354 192 ADYIIYIIDVSGGDKI---PRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l---~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g 262 (283)
++..++++|.+....+ ... .......+-.+|+||.|+........+........ .+.+++++|++++.|
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 78 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES--WNAAFLESSAKENQT 155 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH--TTCEEEECCTTSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH--hCCcEEEEecCCCCC
Confidence 3578889998763211 110 00011234589999999865433333333333222 356899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 023354 263 VEEIVNHILQAWEAS 277 (283)
Q Consensus 263 i~~l~~~l~~~~~~~ 277 (283)
+++++++|.......
T Consensus 156 v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 156 AVDVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877543
No 213
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.73 E-value=3.7e-09 Score=89.97 Aligned_cols=81 Identities=15% Similarity=0.027 Sum_probs=48.3
Q ss_pred CCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 193 DYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
+..|+++|++....+. .... ..-...-.||+||.|+........+........ .+.+++++|++++.|++
T Consensus 87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE--NQLLFTETSALNSENVD 164 (223)
T ss_dssp CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH--TTCEEEECCCC-CCCHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH--cCCEEEEEeCCCCCCHH
Confidence 5688999987642211 1000 001234478899999875432222333332222 45789999999999999
Q ss_pred HHHHHHHHHHH
Q 023354 265 EIVNHILQAWE 275 (283)
Q Consensus 265 ~l~~~l~~~~~ 275 (283)
+++++|.....
T Consensus 165 ~l~~~l~~~i~ 175 (223)
T 3cpj_B 165 KAFEELINTIY 175 (223)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 214
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.72 E-value=1.3e-08 Score=87.01 Aligned_cols=97 Identities=22% Similarity=0.235 Sum_probs=57.9
Q ss_pred cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---Cchhh-------cCCcccccCEEEEEcCCcccccCChHHHHh
Q 023354 174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRK-------GGPGITQADLLVINKTDLASAIGADLAVME 240 (283)
Q Consensus 174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~-------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~ 240 (283)
.+++++||.+--.+.... ++..+++.|.+.-. .+..+ ... ...-.||.||.|+.....-..+...
T Consensus 65 ~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~--~~piilVgNK~Dl~~~r~V~~~e~~ 142 (216)
T 4dkx_A 65 QLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIEEGE 142 (216)
T ss_dssp EEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCC--CCeEEEEeeccchHhcCcccHHHHh
Confidence 345566654332333222 35788888987632 22111 111 2234788899998754333333333
Q ss_pred HHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354 241 RDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 241 ~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
+...+ .+++++++||++|.||+++++.|....
T Consensus 143 ~~a~~--~~~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 143 RKAKE--LNVMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp HHHHH--HTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred hHHHH--hCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 33333 246789999999999999999987654
No 215
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.71 E-value=1.2e-08 Score=96.50 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=46.6
Q ss_pred HHHhcCCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 188 SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 188 a~al~~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
+..-++.+|+++|.+.+...... ........-.+++||+|..... +...+ .. .....+++.+||++|.|+
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~----~~~~e-~~-~lg~~~~~~iSA~~g~gv 172 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR----ANIYD-FY-SLGFGEPYPISGTHGLGL 172 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-------------CC-SG-GGSSSSEEECCTTTCTTH
T ss_pred hHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh----hhHHH-HH-HcCCCceEEeecccccch
Confidence 33446889999997765322111 0011234558999999986431 11111 01 112346789999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWE 275 (283)
Q Consensus 264 ~~l~~~l~~~~~ 275 (283)
.++++++...++
T Consensus 173 ~~L~~~i~~~l~ 184 (456)
T 4dcu_A 173 GDLLDAVAEHFK 184 (456)
T ss_dssp HHHHHHHHTTGG
T ss_pred HHHHHHHHhhcc
Confidence 999999987654
No 216
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.71 E-value=1.2e-09 Score=91.66 Aligned_cols=53 Identities=23% Similarity=0.088 Sum_probs=42.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
|++++|+||||||||||+++|+|+++..| +.+.+.+..... ..++.+|+++|+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~--~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVR--QGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEE--TTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhH--hhhceEEEEEEe
Confidence 67899999999999999999999998338 888776664322 245678998886
No 217
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.71 E-value=3.2e-08 Score=84.15 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=49.4
Q ss_pred CCcEEEEeCCCCCC---chhh---cC---CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 193 DYIIYIIDVSGGDK---IPRK---GG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 193 ~~~l~llDpt~g~~---l~~~---~~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
+..|++.|.+.-.. +... .. ..-..+-.+|.||+|+.....-..+....... ..+.+++++||++|.|+
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~--~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV--VFDCKFIETSAAVQHNV 190 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH--HHTCEEEECBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH--HcCCEEEEEeCCCCCCH
Confidence 57888899775321 1110 00 00123457889999987542222222211111 23468899999999999
Q ss_pred HHHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWEA 276 (283)
Q Consensus 264 ~~l~~~l~~~~~~ 276 (283)
++++++|......
T Consensus 191 ~elf~~l~~~i~~ 203 (211)
T 2g3y_A 191 KELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876643
No 218
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.71 E-value=1.4e-08 Score=92.85 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=51.7
Q ss_pred cCCcEEEEeCCCC--CCc----h---h---hcCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhhcC-CCCeEEEEe
Q 023354 192 ADYIIYIIDVSGG--DKI----P---R---KGGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRD-GGPFIFAQV 257 (283)
Q Consensus 192 ~~~~l~llDpt~g--~~l----~---~---~~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~-~~~i~~isa 257 (283)
++.+|+|+|.+.. .+. . . .+.. .....-.||+||+|+... .+.+. .+.+... ..+++++||
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~-~l~~~l~~~~~v~~iSA 311 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLE-AFKEKLTDDYPVFPISA 311 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHH-HHHHHCCSCCCBCCCSS
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHH-HHHHHhhcCCCEEEEEC
Confidence 5788999998762 111 0 0 1111 123456899999998743 12222 2233332 267899999
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q 023354 258 KHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 258 ~~g~gi~~l~~~l~~~~~~ 276 (283)
+++.|+++++++|...+..
T Consensus 312 ~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 312 VTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CCSSTTHHHHHHHHHHHTS
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999888754
No 219
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.71 E-value=3.7e-09 Score=88.78 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=48.6
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccC------------ChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g------------~~~e~~~~~~~~~~~~~~ 251 (283)
++..++++|.+....+.. ..... -...-.+|+||+|+..... -..+... ...+.....+
T Consensus 102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~ 180 (204)
T 4gzl_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL-AMAKEIGAVK 180 (204)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH-HHHHHTTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHH-HHHHhcCCcE
Confidence 367899999876432111 00000 1334589999999875421 0111111 1223334456
Q ss_pred eEEEEeccCCCHHHHHHHHHHH
Q 023354 252 FIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 252 i~~isa~~g~gi~~l~~~l~~~ 273 (283)
++++||++|.|++++++++.+.
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHT
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999998753
No 220
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.70 E-value=2.5e-09 Score=88.96 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=36.1
Q ss_pred CEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354 219 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 219 d~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~ 273 (283)
-.+++||.|+........+.... +...+...++.+|++++.++++++++|.+.
T Consensus 137 i~~v~nK~Dl~~~~~~~~~~a~~--l~~~~~~~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 137 IMLVGNKSDLRHLRAVPTDEARA--FAEKNGLSFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHH--HHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEECcccccccccCHHHHHH--HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 47788999976432222232222 222356778889999999999999998764
No 221
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.70 E-value=9.1e-09 Score=85.62 Aligned_cols=86 Identities=13% Similarity=0.099 Sum_probs=51.6
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~~ 251 (283)
++..++++|++....+.. ..... -...-.+|+||+|+.... ....+.... +.......+
T Consensus 92 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 170 (201)
T 2q3h_A 92 TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-LAEEIKAAS 170 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-HHHHHTCSE
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-HHHhcCCcE
Confidence 357899999876421111 00000 033458899999987531 111222222 222223347
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHHhh
Q 023354 252 FIFAQVKHGLGVEEIVNHILQAWEAST 278 (283)
Q Consensus 252 i~~isa~~g~gi~~l~~~l~~~~~~~~ 278 (283)
++++||++|.|+++++++|........
T Consensus 171 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 171 YIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 899999999999999999988765443
No 222
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.69 E-value=4.1e-08 Score=88.35 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=37.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~ 120 (283)
.++++++|+|+|||||||+++.|++.+.+. ++|.+++.|...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 458999999999999999999999999876 789999988753
No 223
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.69 E-value=5.4e-09 Score=89.93 Aligned_cols=58 Identities=17% Similarity=0.052 Sum_probs=39.0
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHH--hcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 78 NERAFTVGIGGPVGTGKTALMLALC--KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 78 ~~~g~~v~ilG~nGsGKSTLl~~L~--g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
-.+|++++|+||||||||||+++|+ +++.+. +.+.+.+.+ ......+..+.+|+++|+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~ 87 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE-RARDLRREMASFGWDFEK 87 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-CHHHHHHHHHTTTCCHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC-CHHHHHHHHHHcCCChHH
Confidence 3579999999999999999999999 654555 444444332 211122344567877665
No 224
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.69 E-value=3.4e-09 Score=102.16 Aligned_cols=69 Identities=10% Similarity=-0.001 Sum_probs=54.5
Q ss_pred CCCcccccc-c-CCCcEEEEEcCCCCcHHHHHHH--HHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH
Q 023354 69 APPILSRNF-N-ERAFTVGIGGPVGTGKTALMLA--LCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (283)
Q Consensus 69 ~~~~~~~~~-~-~~g~~v~ilG~nGsGKSTLl~~--L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~ 138 (283)
.+++++++| . .+|++++|+||||||||||+++ ++|+++|+ |.+.+.+.+. .....+.++.+|+++|++.
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence 468899998 5 5699999999999999999999 68999866 8998887662 1122344567999998754
No 225
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.69 E-value=1.9e-09 Score=109.82 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=31.7
Q ss_pred CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
...+++++|.. +|++++|+||||||||||||+++++
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45778999985 5999999999999999999999764
No 226
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.69 E-value=1.3e-09 Score=100.22 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=38.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCC-----CcEEEE----eecCCCCCHHHHHHhccccCCch
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAV----TNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-----g~i~i~----~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
+++++|+||||||||||+++|+|++.|+ |++.+. +.++ .....++ ..+++++|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHH
Confidence 8999999999999999999999999863 555442 2222 2222233 4467766654
No 227
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.69 E-value=7.3e-09 Score=84.38 Aligned_cols=82 Identities=17% Similarity=0.098 Sum_probs=48.6
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccCC----------hHHHHhHHHHhhcCCCCeE
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGA----------DLAVMERDALRMRDGGPFI 253 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g~----------~~e~~~~~~~~~~~~~~i~ 253 (283)
++..++++|++....+.. ..... -...-.+|+||.|+...... ..+.... +.......+++
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~ 158 (182)
T 3bwd_D 80 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-LKKLIGAPAYI 158 (182)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-HHHHHTCSEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-HHHHcCCCEEE
Confidence 357899999876421110 00000 02345889999998654210 1111222 22222234889
Q ss_pred EEEeccCCCHHHHHHHHHHHH
Q 023354 254 FAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 254 ~isa~~g~gi~~l~~~l~~~~ 274 (283)
++||++|.|+++++++|....
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999997654
No 228
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.69 E-value=5.4e-08 Score=92.87 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=62.3
Q ss_pred CCcccCCchHHHHHHHHHH---hcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHH-
Q 023354 172 DLLLCESGGDNLAANFSRE---LADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDA- 243 (283)
Q Consensus 172 d~~i~eSgGq~q~~~ia~a---l~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~- 243 (283)
...++++.|+.+....... .+|..|+++|++.+...+... .........+++||.|++.. ...+...+.+
T Consensus 74 ~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~--~~~~~~~~~l~ 151 (482)
T 1wb1_A 74 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT--EEIKRTEMIMK 151 (482)
T ss_dssp EEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH--HHHHHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc--hhHHHHHHHHH
Confidence 3445667776554333322 246899999998764221110 00112344899999998753 1222222222
Q ss_pred ---Hhh--cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 244 ---LRM--RDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 244 ---~~~--~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
... ....+++++||++|.|+++|+++|....+
T Consensus 152 ~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 152 SILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 221 22578999999999999999999988664
No 229
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.68 E-value=2.4e-08 Score=90.47 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=92.3
Q ss_pred cccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHH-----HHhcccc-CCchHHH
Q 023354 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF-----LMRNGAL-PEERIRA 140 (283)
Q Consensus 73 ~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~-----~~~ig~v-~q~~~~~ 140 (283)
.+++|. .++.+++|+|+|||||||++..|++.+.+. ++|.+++.|+..... ..+ +..++++ +|..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~--- 172 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL--- 172 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST---
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC---
Confidence 355665 458999999999999999999999998876 899999988754221 111 1234444 2210
Q ss_pred HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHH--------HHHHHHh-------cCCcEEEEeCCCCC
Q 023354 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA--------ANFSREL-------ADYIIYIIDVSGGD 205 (283)
Q Consensus 141 i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~--------~~ia~al-------~~~~l~llDpt~g~ 205 (283)
..... ..+.+.+... ....+|.+++++.|..+. ..+.+.+ .+.+++++|++++.
T Consensus 173 -------~~~p~---~~~~~~l~~~-~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~ 241 (320)
T 1zu4_A 173 -------NADPA---SVVFDAIKKA-KEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQ 241 (320)
T ss_dssp -------TCCHH---HHHHHHHHHH-HHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTH
T ss_pred -------CCCHH---HHHHHHHHHH-HhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcH
Confidence 00111 1112223222 345789999985553221 1111222 23458889987653
Q ss_pred Cchh---hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 206 KIPR---KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 206 ~l~~---~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
+... .....+ ...-+|+||.+.-...| ..+ . +.. ..+.|+.++. .|++++
T Consensus 242 ~~l~~~~~~~~~~-~i~GvVltk~d~~~~~g---~~~-~-~~~-~~~~Pi~~i~--~Ge~~~ 294 (320)
T 1zu4_A 242 NGVIQAEEFSKVA-DVSGIILTKMDSTSKGG---IGL-A-IKE-LLNIPIKMIG--VGEKVD 294 (320)
T ss_dssp HHHHHHHHHTTTS-CCCEEEEECGGGCSCTT---HHH-H-HHH-HHCCCEEEEE--CSSSTT
T ss_pred HHHHHHHHHhhcC-CCcEEEEeCCCCCCchh---HHH-H-HHH-HHCcCEEEEe--CCCCcc
Confidence 2111 111111 13468999987643322 111 1 111 2357887775 566654
No 230
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.68 E-value=1.3e-08 Score=83.46 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=39.5
Q ss_pred ccCEEEEEcCCcccccCChHHHHhHHHHhhcC-----CCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354 217 QADLLVINKTDLASAIGADLAVMERDALRMRD-----GGPFIFAQVKHGLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~-----~~~i~~isa~~g~gi~~l~~~l~~~~~~~ 277 (283)
.+-.+|+||+|+.... .+........... ..+++++|+++|.|+++++++|...+...
T Consensus 123 ~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 123 IPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp CCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 4558999999987652 2223222222211 12479999999999999999998877654
No 231
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.67 E-value=1.6e-08 Score=95.17 Aligned_cols=165 Identities=17% Similarity=0.270 Sum_probs=90.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC---ChHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA---AIREDI 155 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~---~~~~~~ 155 (283)
++.+++++|++||||||++..|+..+... .++.++..|+......+..+..+ ...+.+.. ......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~----------~~~gvpv~~~~~~~dp~ 168 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL----------DRYHIEVFGNPQEKDAI 168 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHH----------GGGTCEEECCTTCCCHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHH----------HhcCCcEEecCCCCCHH
Confidence 57899999999999999999999988766 58888888875432211111110 00111110 000011
Q ss_pred HHHHHHHHHccccccCCCcccCCchH-----HHHH---HHHHHh-cCCcEEEEeCCCCCCchhh---cCCcccccCEEEE
Q 023354 156 SINLGPLEELSNLFKADLLLCESGGD-----NLAA---NFSREL-ADYIIYIIDVSGGDKIPRK---GGPGITQADLLVI 223 (283)
Q Consensus 156 ~~~~~~l~~l~~~~~~d~~i~eSgGq-----~q~~---~ia~al-~~~~l~llDpt~g~~l~~~---~~~~i~~ad~ivi 223 (283)
..+...+..+ ....+|.+++++.|. .... .+.++. .+.+++|+|++.+.+.... +...+ ..+-||+
T Consensus 169 ~i~~~al~~a-~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~-~i~gVIl 246 (443)
T 3dm5_A 169 KLAKEGVDYF-KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEAT-PIGSIIV 246 (443)
T ss_dssp HHHHHHHHHH-HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSC-TTEEEEE
T ss_pred HHHHHHHHHH-HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhC-CCeEEEE
Confidence 1122334333 234588888886662 1112 222222 2578999999887543221 11111 2346999
Q ss_pred EcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 224 ~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
||.|.....|.... +. ...+.|+.+++. |++++
T Consensus 247 TKlD~~~~gG~~ls-----~~-~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 247 TKLDGSAKGGGALS-----AV-AATGAPIKFIGT--GEKID 279 (443)
T ss_dssp ECCSSCSSHHHHHH-----HH-HTTCCCEEEEEC--SSSTT
T ss_pred ECCCCcccccHHHH-----HH-HHHCCCEEEEEc--CCChH
Confidence 99997644322211 11 235789988874 66553
No 232
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.67 E-value=1e-08 Score=83.69 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=49.4
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccC------------ChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g------------~~~e~~~~~~~~~~~~~~ 251 (283)
++..++++|++....+.. ..... -...-.+|+||.|+..... -..+.... +.+.....+
T Consensus 77 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 155 (186)
T 1mh1_A 77 TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA-MAKEIGAVK 155 (186)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH-HHHHTTCSE
T ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH-HHHhcCCcE
Confidence 357889999876421111 00000 0334589999999875411 01111111 222222248
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH
Q 023354 252 FIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 252 i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
++++||++|.|++++++++.....
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 156 YLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEecCCCccCHHHHHHHHHHHHh
Confidence 999999999999999999987764
No 233
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.67 E-value=5.7e-09 Score=104.63 Aligned_cols=98 Identities=13% Similarity=-0.028 Sum_probs=64.5
Q ss_pred CCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhccc-CC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCC
Q 023354 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (283)
Q Consensus 69 ~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~ 146 (283)
...+++++|. |++++|+||||||||||||+++|+.. +. |.+. +. ....+|+++|-.
T Consensus 566 ~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa------~~~~i~~v~~i~--------- 623 (765)
T 1ewq_A 566 EFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PA------EEAHLPLFDGIY--------- 623 (765)
T ss_dssp CCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SS------SEEEECCCSEEE---------
T ss_pred ceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----eh------hccceeeHHHhh---------
Confidence 4678899998 99999999999999999999999864 44 6532 00 123466665510
Q ss_pred CCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHh--c-CCcEEEEe-C---CCCCC
Q 023354 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL--A-DYIIYIID-V---SGGDK 206 (283)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al--~-~~~l~llD-p---t~g~~ 206 (283)
......+++ ....|.|+.+++.+++++ + ++.++++| | |++.|
T Consensus 624 ~~~~~~d~l------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 624 TRIGASDDL------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp EECCC------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred ccCCHHHHH------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 000111110 112388899999999888 5 48888888 8 55443
No 234
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.67 E-value=9.8e-09 Score=93.21 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=51.4
Q ss_pred cCCcEEEEeCCCCCCchh---hcC---Cc---ccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGG---PG---ITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~---~~---i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~ 259 (283)
++.+|+++|++....+.. ... .. -..+-.||+||.|+.... ..+.+...+... ....+++.+|+++
T Consensus 233 ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 233 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 468899999876432211 100 00 123458999999987652 233333322211 1345789999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAWE 275 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~ 275 (283)
|.|+++++++|...+.
T Consensus 311 g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 311 GDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TBTHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987654
No 235
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=1.4e-08 Score=85.23 Aligned_cols=83 Identities=22% Similarity=0.172 Sum_probs=48.4
Q ss_pred cCCcEEEEeCCCCCCch---hhcCCcc-----cccCEEEEEcCCcccccC------------ChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIP---RKGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~~~~~~i-----~~ad~ivi~K~g~i~~~g------------~~~e~~~~~~~~~~~~~~ 251 (283)
++..++++|++....+. ......+ ...-.+|+||.|+..... -..+.... +.......+
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 175 (207)
T 2fv8_A 97 TDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA-MAVRIQAYD 175 (207)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-HHHHTTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH-HHHhcCCCE
Confidence 35788889987642111 0000000 234589999999875410 01111111 112222237
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH
Q 023354 252 FIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 252 i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
++++||++|.|+++++++|.+...
T Consensus 176 ~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 176 YLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999987654
No 236
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.66 E-value=8.9e-09 Score=97.96 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=43.3
Q ss_pred CcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (283)
Q Consensus 71 ~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~ 120 (283)
++++++|..+.++++|+|||||||||||++|+|+++|+ |+|.+.+.++..
T Consensus 19 ~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 19 GFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp TEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred cccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 56777777433999999999999999999999999987 999999887764
No 237
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.66 E-value=8.3e-09 Score=84.61 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=48.6
Q ss_pred cCCcEEEEeCCCCCCchh---hc---CC---cccccCEEEEEcCCcccccCChHHHHhHHHHh-h--cCCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDKIPR---KG---GP---GITQADLLVINKTDLASAIGADLAVMERDALR-M--RDGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~---~~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~-~--~~~~~i~~isa~~ 259 (283)
++..++++|.+....+.. .. .. .....-.+|+||.|+... ...+.+.+.+.. . ....+++.+||++
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 367899999887543221 00 00 112344899999998654 222333322211 1 1234789999999
Q ss_pred CCCHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQ 272 (283)
Q Consensus 260 g~gi~~l~~~l~~ 272 (283)
|.|+++++++|.+
T Consensus 167 g~gi~~l~~~l~~ 179 (181)
T 2h17_A 167 GEGLCQGLEWMMS 179 (181)
T ss_dssp TBTHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 9999999999864
No 238
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.65 E-value=6.2e-08 Score=85.54 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
.+|++++|+||||||||||++.+++.+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 47999999999999999999999986653
No 239
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65 E-value=2.3e-08 Score=82.62 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=48.7
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCcc-----cccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~i-----~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~~ 251 (283)
++..++++|++....+.. .....+ ...-.+|+||+|+.... .-..+..... .+.....+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~ 168 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL-AKEIGACC 168 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH-HHHHTCSC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH-HHHcCCcE
Confidence 357889999876421111 000000 23458999999987531 0111222222 22222348
Q ss_pred eEEEEeccCCCHHHHHHHHHHHH
Q 023354 252 FIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 252 i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
++++|+++|.|+++++++|....
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997654
No 240
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.64 E-value=2.6e-08 Score=82.32 Aligned_cols=81 Identities=17% Similarity=0.031 Sum_probs=50.3
Q ss_pred cCCcEEEEeCCCCCCch---hhcCCc--------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEe-cc
Q 023354 192 ADYIIYIIDVSGGDKIP---RKGGPG--------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV-KH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~~~~~~--------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa-~~ 259 (283)
++..++++|.+....+. ...... -...-.+|.||+|+.....-..+...+..... +.+++++|| ++
T Consensus 92 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa~~~ 169 (187)
T 3c5c_A 92 AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF--GCLFFEVSACLD 169 (187)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEECCSSSC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc--CCcEEEEeecCc
Confidence 46788999987642111 110000 12344899999998654322333333333332 458999999 89
Q ss_pred CCCHHHHHHHHHHHH
Q 023354 260 GLGVEEIVNHILQAW 274 (283)
Q Consensus 260 g~gi~~l~~~l~~~~ 274 (283)
+.|++++++++....
T Consensus 170 g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 170 FEHVQHVFHEAVREA 184 (187)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999997765
No 241
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.63 E-value=2.5e-09 Score=94.59 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=49.8
Q ss_pred cCCcEEEEeCCCCCCchhh--cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~--~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
++.+|+++|+++....... .......+-.+++||+|+....+...+ . ..+.+ ..+.|++++||++|.|+++++++
T Consensus 86 ~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~-~-~~l~~-~lg~~~i~~SA~~g~gi~el~~~ 162 (274)
T 3i8s_A 86 ADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIE-I-DALSA-RLGCPVIPLVSTRGRGIEALKLA 162 (274)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEEC-H-HHHHH-HHTSCEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHH-H-HHHHH-hcCCCEEEEEcCCCCCHHHHHHH
Confidence 4678999998763211000 000124456899999998755332111 1 11222 23578999999999999999999
Q ss_pred HHHHH
Q 023354 270 ILQAW 274 (283)
Q Consensus 270 l~~~~ 274 (283)
+....
T Consensus 163 i~~~~ 167 (274)
T 3i8s_A 163 IDRYK 167 (274)
T ss_dssp HHTCC
T ss_pred HHHHH
Confidence 87654
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.62 E-value=7.1e-09 Score=93.08 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEE---EeecCCCCCHHHHHHhccccCCch
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i---~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
..|++++|+||||||||||+|+|+ ++.|. |.|.+ .+.++.........+.+|+++|.+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p 224 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP 224 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECc
Confidence 468999999999999999999999 88887 99998 666654322111112578887764
No 243
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.62 E-value=6.9e-09 Score=86.73 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=47.9
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccC------------ChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g------------~~~e~~~~~~~~~~~~~~ 251 (283)
++..++++|++....+.. ..... -...-.+|+||+|+..... -..+.... ........+
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 175 (201)
T 2gco_A 97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD-MANRISAFG 175 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH-HHHHTTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH-HHHhCCCcE
Confidence 357888999876321110 00000 0334589999999875411 11111111 122222337
Q ss_pred eEEEEeccCCCHHHHHHHHHHHH
Q 023354 252 FIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 252 i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
++++|+++|.|+++++++|.+..
T Consensus 176 ~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 176 YLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999997754
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.60 E-value=7e-08 Score=90.52 Aligned_cols=170 Identities=22% Similarity=0.195 Sum_probs=92.5
Q ss_pred ccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-H---HHhccccCCchHHHHHhCCCC
Q 023354 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-F---LMRNGALPEERIRAVETGGCP 147 (283)
Q Consensus 73 ~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~---~~~ig~v~q~~~~~i~~~g~~ 147 (283)
..++|. ++.+++|+|++||||||++..|++.+.+. +++.+++.|+......+ + ....++ + .+....
T Consensus 91 ~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv-~-------v~~~~~ 161 (425)
T 2ffh_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV-P-------VLEVMD 161 (425)
T ss_dssp CCCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTC-C-------EEECCT
T ss_pred ccccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCc-c-------EEecCC
Confidence 345566 88999999999999999999999999876 79999998875422111 1 111111 0 000001
Q ss_pred CCChHHHHHHHHHHHHHccccccCCCcccCCchH--------HHHHHHHHHhc-CCcEEEEeCCCCCCchhh---cCCcc
Q 023354 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-DYIIYIIDVSGGDKIPRK---GGPGI 215 (283)
Q Consensus 148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq--------~q~~~ia~al~-~~~l~llDpt~g~~l~~~---~~~~i 215 (283)
... ...+ ..+.++.+ ....+|.+++++.|. .+...+++++. +++++++|++++.+.... +...+
T Consensus 162 ~~~-p~~i--~~~~l~~~-~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l 237 (425)
T 2ffh_A 162 GES-PESI--RRRVEEKA-RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV 237 (425)
T ss_dssp TCC-HHHH--HHHHHHHH-HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHT
T ss_pred CCC-HHHH--HHHHHHHH-HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcC
Confidence 011 1111 12233333 235678888885442 22233444443 578999998877433221 11111
Q ss_pred cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 216 ~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
. ..-||+||.|.-...|.... +. ...+.|+.++. .|+.++
T Consensus 238 ~-i~GVIlTKlD~~~~~g~als-----i~-~~~g~PI~flg--~Ge~~~ 277 (425)
T 2ffh_A 238 G-VTGLVLTKLDGDARGGAALS-----AR-HVTGKPIYFAG--VSEKPE 277 (425)
T ss_dssp C-CCEEEEESGGGCSSCHHHHH-----HH-HHHCCCEEEEE--CSSSGG
T ss_pred C-ceEEEEeCcCCcccHHHHHH-----HH-HHHCCCEEEEe--CCCChh
Confidence 1 25789999876433221111 11 12367887765 344443
No 245
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.60 E-value=1.9e-08 Score=85.12 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=50.4
Q ss_pred cCCcEEEEeCCCCCCchh----hcCC----cccccCEEEEEcCCcccc------------cCChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR----KGGP----GITQADLLVINKTDLASA------------IGADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~----~~~~----~i~~ad~ivi~K~g~i~~------------~g~~~e~~~~~~~~~~~~~~ 251 (283)
++.+|+++|.+....+.. .... .-...-.+|.||+|+... ..-..+..... .......+
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~ 177 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI-AKQLGAEI 177 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH-HHHHTCSE
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH-HHHcCCCE
Confidence 367899999887532211 1000 012345889999998752 11122222222 22222338
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHH
Q 023354 252 FIFAQVKHGLG-VEEIVNHILQAWE 275 (283)
Q Consensus 252 i~~isa~~g~g-i~~l~~~l~~~~~ 275 (283)
++++||++|.| ++++++++.....
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCcccHHHHHHHHHHHHh
Confidence 89999999998 9999999987654
No 246
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.60 E-value=3.8e-08 Score=88.48 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=41.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhccc--CC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~--~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (283)
.+|++++|+|+||||||||+++|+|++. |+ |.|.++..+-..... ..++.+|++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~~~~~~~v 134 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QVLKERGLM 134 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HHHHHHTCT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HHHHhCCEe
Confidence 5689999999999999999999999987 76 899885443322222 344567777
No 247
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.60 E-value=2e-08 Score=103.63 Aligned_cols=102 Identities=16% Similarity=0.031 Sum_probs=60.8
Q ss_pred CCCcccccccCC--------CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhcc-ccCCchHH
Q 023354 69 APPILSRNFNER--------AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNG-ALPEERIR 139 (283)
Q Consensus 69 ~~~~~~~~~~~~--------g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~~ 139 (283)
...+++++|... |++++|+||||||||||||.+ |++.+ ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC-
Confidence 457888888643 799999999999999999999 98642 24566 8888642
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCC
Q 023354 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDK 206 (283)
Q Consensus 140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~ 206 (283)
.++.+.... ..++..+....-+.. ++++. +++++++++. +.++|+| |++|.+
T Consensus 828 --~l~v~d~I~------------~rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd 882 (1022)
T 2o8b_B 828 --RLTPIDRVF------------TRLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRGTA 882 (1022)
T ss_dssp --EECCCSBEE------------EECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSC
T ss_pred --CCCHHHHHH------------HHcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCC
Confidence 111111000 000000000000111 44444 4788888874 7777777 988865
No 248
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.58 E-value=2.2e-08 Score=95.53 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=51.1
Q ss_pred cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~ 259 (283)
++.+|+|+|.+....+.. .. . .....+-.||+||+|+.... ..+.+...+... ....+++++||++
T Consensus 390 ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 390 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 367899999887532211 10 0 00123458999999986542 223232222111 1234689999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 023354 260 GLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~~~ 277 (283)
|.|+++++++|.+.+...
T Consensus 468 g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp TBTHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999998876544
No 249
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.55 E-value=9.8e-08 Score=80.00 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=41.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
.+|++++|+||||||||||+++|++.+ |.+.+.+.++... ........|+++|+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~-~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSP-ENIATMQRGIPLTDE 81 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCH-HHHHHHHTTCCCCHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccH-HHHHHHhcCCCCCCc
Confidence 468999999999999999999999976 7788877766421 112233578888764
No 250
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.54 E-value=8.7e-09 Score=92.08 Aligned_cols=122 Identities=17% Similarity=0.168 Sum_probs=64.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC----cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHH
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY----SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED 154 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g----~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~ 154 (283)
.++.+|+|+|++|||||||.+.|.+++.+.| .+.++..|..-.+. ..+.++.+-..+. .....-|++.....+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~-~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTH-EDQLKLNEQFKNN-KLLQGRGLPGTHDMKL 106 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCH-HHHHHHHHHTTTC-GGGSSSCSTTSBCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCCh-HHHHHHhcccccc-chhhhccCcchhHHHH
Confidence 3578999999999999999999999987543 34443444332222 2222221100000 0001112333332222
Q ss_pred HHHHHHHHHHcccc------cc---CCCcccCCchHHHHHHHH--HHhcCCcEEEEe-CCCCCC
Q 023354 155 ISINLGPLEELSNL------FK---ADLLLCESGGDNLAANFS--RELADYIIYIID-VSGGDK 206 (283)
Q Consensus 155 ~~~~~~~l~~l~~~------~~---~d~~i~eSgGq~q~~~ia--~al~~~~l~llD-pt~g~~ 206 (283)
+ .+.+..+... .. ...-...||||+||+.+| +++ .+.|+|+| ++.+.+
T Consensus 107 l---~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 107 L---QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFN 166 (290)
T ss_dssp H---HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCC
T ss_pred H---HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCC
Confidence 2 2344443221 10 111112299999998876 556 78888888 777543
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.54 E-value=3e-08 Score=83.38 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
+|.+++|+||||||||||+++|+|+++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 588999999999999999999999875
No 252
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.53 E-value=1.5e-08 Score=83.50 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=52.4
Q ss_pred cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHH-hh--cCCCCeEEEEecc
Q 023354 192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDAL-RM--RDGGPFIFAQVKH 259 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~--~~~~~i~~isa~~ 259 (283)
++..++++|++....+.. .. . ..-..+-.+|+||.|+.... ..+.+...+. .. ....+++++|+++
T Consensus 90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 90 TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCC
Confidence 467899999877543221 10 0 00133458999999987542 2222222221 11 1234789999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 023354 260 GLGVEEIVNHILQAWEAS 277 (283)
Q Consensus 260 g~gi~~l~~~l~~~~~~~ 277 (283)
+.|+++++++|.......
T Consensus 168 ~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 168 GDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 999999999998877543
No 253
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.53 E-value=9.9e-08 Score=97.45 Aligned_cols=34 Identities=21% Similarity=0.081 Sum_probs=30.1
Q ss_pred CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHH
Q 023354 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALC 102 (283)
Q Consensus 69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~ 102 (283)
...+++++|... |++++|+||||||||||||.++
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 457788999865 9999999999999999999993
No 254
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.53 E-value=2.6e-08 Score=95.39 Aligned_cols=181 Identities=16% Similarity=0.254 Sum_probs=97.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH----hccccCCchHHHHHhCCCCCCChHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM----RNGALPEERIRAVETGGCPHAAIRED 154 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~----~ig~v~q~~~~~i~~~g~~~~~~~~~ 154 (283)
+..+|+|+|++|||||||++.|+..+... .++.++..|+......+..+ +.++ + .++...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i-~-------v~~~~~~~d-p-- 168 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI-P-------FYGSYTEMD-P-- 168 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTC-C-------EEECCCCSC-H--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCc-e-------EEccCCCCC-H--
Confidence 46689999999999999999999776644 47888888875432211111 1110 0 000000011 1
Q ss_pred HHHHHHHHHHccccccCCCcccCCchHHH-----H---HHHHHHh-cCCcEEEEeCCCCCCchhhcCCccc--cc-CEEE
Q 023354 155 ISINLGPLEELSNLFKADLLLCESGGDNL-----A---ANFSREL-ADYIIYIIDVSGGDKIPRKGGPGIT--QA-DLLV 222 (283)
Q Consensus 155 ~~~~~~~l~~l~~~~~~d~~i~eSgGq~q-----~---~~ia~al-~~~~l~llDpt~g~~l~~~~~~~i~--~a-d~iv 222 (283)
.......+..+ ....+|.+++++.|... . ..+++++ .+.+++++|++.+.+..... ..+. .. +.||
T Consensus 169 ~~i~~~al~~~-~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a-~~~~~~~~i~gvV 246 (504)
T 2j37_W 169 VIIASEGVEKF-KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA-KAFKDKVDVASVI 246 (504)
T ss_dssp HHHHHHHHHHH-HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH-HHHHHHHCCCCEE
T ss_pred HHHHHHHHHHH-HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH-HHHHhhcCceEEE
Confidence 11112334433 22467888888555321 1 1122222 35789999998875422111 1111 22 5899
Q ss_pred EEcCCcccccCChHHHHhHH------------HHhhcCCCCeEEEEeccCCC-HHHHHHHHHHH
Q 023354 223 INKTDLASAIGADLAVMERD------------ALRMRDGGPFIFAQVKHGLG-VEEIVNHILQA 273 (283)
Q Consensus 223 i~K~g~i~~~g~~~e~~~~~------------~~~~~~~~~i~~isa~~g~g-i~~l~~~l~~~ 273 (283)
+||.|.....+......... +....+..|.+++|+..|.| +.+|++++.+.
T Consensus 247 lNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 247 VTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99999875433222221100 00111233445678889999 99999988766
No 255
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.52 E-value=7.4e-08 Score=79.25 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.+++|+|++|||||||++.+++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999853
No 256
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.52 E-value=3e-08 Score=81.43 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=47.9
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~~ 251 (283)
++..++++|.+....+.. ..... -..+-.++.||.|+.... .-..+...+ +.+.....+
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 157 (184)
T 1m7b_A 79 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-MAKQIGAAT 157 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-HHHHHTCSE
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH-HHHHcCCcE
Confidence 357889999876421111 00000 023447889999987421 011222222 222233468
Q ss_pred eEEEEec-cCCCHHHHHHHHHHHH
Q 023354 252 FIFAQVK-HGLGVEEIVNHILQAW 274 (283)
Q Consensus 252 i~~isa~-~g~gi~~l~~~l~~~~ 274 (283)
++++||+ ++.|++++++++.+..
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHH
T ss_pred EEEeeecCCCcCHHHHHHHHHHHH
Confidence 8999999 6899999999987654
No 257
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.51 E-value=4.2e-08 Score=89.78 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=46.2
Q ss_pred cccccCCCCCCCCCCCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354 55 SHEPIYSPGYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (283)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d 117 (283)
.........|.. ...+++.+ |. .+|++++|+||||||||||+++|+|++.|+ |.+.+.+.+
T Consensus 46 i~~~~l~~~~~t-g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 46 LLRQVIDQPFIL-GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp TTCCCCCSEECC-SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred eeecccceecCC-CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 444444444432 23567777 66 569999999999999999999999999988 877776643
No 258
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.51 E-value=3.2e-08 Score=83.30 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=47.7
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~~ 251 (283)
++..|+++|.+....+.. ..... -...-.+|.||.|+.... .-..+.... +.+.....+
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 178 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-MAKQIGAAT 178 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-HHHHHTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH-HHHHcCCCE
Confidence 357889999876421111 00000 023447889999987421 011122222 222233457
Q ss_pred eEEEEec-cCCCHHHHHHHHHHHH
Q 023354 252 FIFAQVK-HGLGVEEIVNHILQAW 274 (283)
Q Consensus 252 i~~isa~-~g~gi~~l~~~l~~~~ 274 (283)
++++||+ ++.|++++++++.+..
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHH
Confidence 8999999 6899999999987654
No 259
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.51 E-value=2.4e-08 Score=83.83 Aligned_cols=83 Identities=17% Similarity=0.126 Sum_probs=50.1
Q ss_pred cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccCC--------hHHHHhHHHHhhcCCCCeEEE
Q 023354 192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGA--------DLAVMERDALRMRDGGPFIFA 255 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g~--------~~e~~~~~~~~~~~~~~i~~i 255 (283)
++..|+++|.+....+.. ..... -..+-.||+||.|+...... ..+.... +.......+++++
T Consensus 81 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~ 159 (212)
T 2j0v_A 81 ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEE-LRKQIGAAAYIEC 159 (212)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHH-HHHHHTCSEEEEC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHH-HHHHcCCceEEEc
Confidence 367899999876421111 00000 02345899999998654210 1122222 2222333488999
Q ss_pred EeccCCCHHHHHHHHHHHHH
Q 023354 256 QVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 256 sa~~g~gi~~l~~~l~~~~~ 275 (283)
|+++|.|+++++++|.....
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999987764
No 260
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.49 E-value=3.4e-07 Score=76.07 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=49.3
Q ss_pred hcCCcEEEEeCCCCCCc---hh------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354 191 LADYIIYIIDVSGGDKI---PR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL 261 (283)
Q Consensus 191 l~~~~l~llDpt~g~~l---~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~ 261 (283)
.++..+++.|.+.-..+ .. .....-..+-.++.||.|+.....-..+... ......+.+++++||++|.
T Consensus 80 ~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~--~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 80 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR--AXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH--HHHHHTTCEEEECBTTTTB
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH--HHHHHhCCceEEeccccCC
Confidence 45778899997753211 10 0000012344788999998643211222111 1112235678999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023354 262 GVEEIVNHILQAWE 275 (283)
Q Consensus 262 gi~~l~~~l~~~~~ 275 (283)
|++++++++.....
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 261
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.49 E-value=4e-08 Score=98.96 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=33.2
Q ss_pred CCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 69 ~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
...+++++|..+|++++|+||||||||||||+|+|+.
T Consensus 595 ~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3578889998779999999999999999999999964
No 262
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.48 E-value=5.7e-08 Score=80.32 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=38.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
.+|++++|+||||||||||+++|++. ++ |.|.+.+.++..... ....++|++|..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~ 62 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSH 62 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchh
Confidence 46899999999999999999999997 44 778777655421110 012357777753
No 263
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.48 E-value=1.5e-07 Score=84.13 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=46.8
Q ss_pred cCCcEEEEeCCC-CC---C---chhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhh-cCCCCeEEEEecc---C
Q 023354 192 ADYIIYIIDVSG-GD---K---IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRM-RDGGPFIFAQVKH---G 260 (283)
Q Consensus 192 ~~~~l~llDpt~-g~---~---l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~-~~~~~i~~isa~~---g 260 (283)
++.+++++|+++ +. + +.... ........+|+||+|++.......+.+...+... ..+.++..+|+.+ +
T Consensus 168 ~d~iilvvd~~~~~~~~~~~~~i~~~~-~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~ 246 (315)
T 1jwy_B 168 QNAIIVAVTPANTDLANSDALQLAKEV-DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAK 246 (315)
T ss_dssp TTEEEEEEEESSSCSTTCSHHHHHHHH-CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSS
T ss_pred CCeEEEEEEecCcchhhhHHHHHHHHh-CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccC
Confidence 356888888643 21 1 11111 1123455899999999865322233332110000 1223455566666 8
Q ss_pred CCHHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWEA 276 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~~ 276 (283)
.|+.++++.+..+++.
T Consensus 247 ~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 247 KSIRESLKSEILYFKN 262 (315)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 8999999998888764
No 264
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.48 E-value=3.5e-07 Score=83.17 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHh
Q 023354 81 AFTVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g 103 (283)
..+.+|+||||||||||+.+|+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999998744
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.48 E-value=6.5e-08 Score=81.70 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.2
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (283)
Q Consensus 78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~ 108 (283)
..+|++++|+||||||||||+++|+|++.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3569999999999999999999999999864
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.47 E-value=6.5e-08 Score=80.24 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDK 108 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~ 108 (283)
|++++|+||||||||||+++|++++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 4689999999999999999999998754
No 267
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.47 E-value=8e-08 Score=86.07 Aligned_cols=171 Identities=19% Similarity=0.224 Sum_probs=93.5
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-H---HHhccccCCchHHHHHhCCCCCC
Q 023354 75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-F---LMRNGALPEERIRAVETGGCPHA 149 (283)
Q Consensus 75 ~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~---~~~ig~v~q~~~~~i~~~g~~~~ 149 (283)
+++..++.+++++|++|+||||++..|++.+.+. +++.+.+.|+......+ + ....++- ...+....
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~--------v~~~~~~~ 163 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVP--------VYGEPGEK 163 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCC--------EECCTTCC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeE--------EEecCCCC
Confidence 4555568999999999999999999999998866 78999998876432211 1 1111110 00010001
Q ss_pred ChHHHHHHHHHHHHHccccccCCCcccCCchHHH-----HHH-----HHHHh-cCCcEEEEeCCCCCCchhhcCCcc--c
Q 023354 150 AIREDISINLGPLEELSNLFKADLLLCESGGDNL-----AAN-----FSREL-ADYIIYIIDVSGGDKIPRKGGPGI--T 216 (283)
Q Consensus 150 ~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q-----~~~-----ia~al-~~~~l~llDpt~g~~l~~~~~~~i--~ 216 (283)
. ... ...+.++.+ ....+|.+++++.|... .+. +..++ .+..++++|++++.+...... .+ .
T Consensus 164 ~-p~~--~~~~~l~~~-~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~-~~~~~ 238 (297)
T 1j8m_F 164 D-VVG--IAKRGVEKF-LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLAS-KFNQA 238 (297)
T ss_dssp C-HHH--HHHHHHHHH-HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHH-HHHHT
T ss_pred C-HHH--HHHHHHHHH-HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHH-HHHhh
Confidence 1 111 112334433 22467888887544322 111 12233 367899999877643221110 11 1
Q ss_pred cc-CEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354 217 QA-DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI 266 (283)
Q Consensus 217 ~a-d~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l 266 (283)
.. ..+|+||.|.....| .... .....+.|+.+++ .|++++++
T Consensus 239 ~~i~gvVlnk~D~~~~~g----~~~~--~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 239 SKIGTIIITKMDGTAKGG----GALS--AVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp CTTEEEEEECGGGCTTHH----HHHH--HHHTTTCCEEEEE--CSSSTTCE
T ss_pred CCCCEEEEeCCCCCcchH----HHHH--HHHHHCcCEEEEe--CCCChhhc
Confidence 22 478999988643211 1111 2223467888876 67777543
No 268
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.47 E-value=1.2e-08 Score=91.78 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEE---EeecCCCCCHHHHHH-hccccCCch
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLM-RNGALPEER 137 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i---~~~d~~~~~~~~~~~-~ig~v~q~~ 137 (283)
.+|++++|+||||||||||+|+|+|+.++. |.|.+ .+....... ++.+ .+|+++|.+
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtp 232 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTP 232 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCC
Confidence 368999999999999999999999999876 98887 444433221 1222 267777754
No 269
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.46 E-value=8.4e-08 Score=89.88 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=39.9
Q ss_pred cccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (283)
Q Consensus 72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~ 119 (283)
+.+. +..+|.+++|+|||||||||||++|+|++.+. |+|.+++.++.
T Consensus 159 L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 159 FRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp HHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred HHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 4444 45678999999999999999999999999876 99999887764
No 270
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.46 E-value=5.3e-09 Score=90.22 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=30.9
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354 75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (283)
Q Consensus 75 ~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~ 119 (283)
++|.. ++++|+|||||||||||++|+|++.|+ |.|.+.+.++.
T Consensus 23 ~~~~~--~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 23 FDLDE--LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEA 66 (227)
T ss_dssp ECHHH--HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--------
T ss_pred EEEcC--cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcc
Confidence 44443 789999999999999999999999987 99998887763
No 271
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.46 E-value=5.1e-08 Score=89.37 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhc---CCcEEEEeCCCCCCc-------hhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC
Q 023354 180 GDNLAANFSRELA---DYIIYIIDVSGGDKI-------PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDG 249 (283)
Q Consensus 180 Gq~q~~~ia~al~---~~~l~llDpt~g~~l-------~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~ 249 (283)
...++..+++..+ +.+|+++|+++.... ..... .....-.+|+||+|++.......+.+.. .....+
T Consensus 158 ~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~-~~~~~~i~V~nK~Dl~~~~~~~~~~~~~--~~~~~~ 234 (360)
T 3t34_A 158 IVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD-PSGDRTFGVLTKIDLMDKGTDAVEILEG--RSFKLK 234 (360)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSC-TTCTTEEEEEECGGGCCTTCCSHHHHTT--SSSCCS
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhc-ccCCCEEEEEeCCccCCCcccHHHHHcC--cccccc
Confidence 3455666666654 456777776542211 11111 1123458999999998653333332222 122235
Q ss_pred CCeEEEEeccCCCHHHHHHH
Q 023354 250 GPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 250 ~~i~~isa~~g~gi~~l~~~ 269 (283)
.+++.++++++.++++.+.+
T Consensus 235 ~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 235 YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp SCCEEECCCCHHHHHTTCCH
T ss_pred CCeEEEEECChHHhccCCCH
Confidence 67888999888877654443
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.45 E-value=9e-08 Score=87.61 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-----Cc-EEEEeec
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-----YS-LAAVTND 117 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-----g~-i~i~~~d 117 (283)
.+|+++.|+||||||||||++.|++.. +|+ |+ +.+++.+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 469999999999999999999999987 332 46 5555544
No 273
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.44 E-value=1.9e-08 Score=94.27 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=31.2
Q ss_pred cccccccCC-CcE--EEEEcCCCCcHHHHHHHHHhcc
Q 023354 72 ILSRNFNER-AFT--VGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 72 ~~~~~~~~~-g~~--v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+.+++|..+ |++ ++|+||||||||||||+|+|+.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 888888865 999 9999999999999999999974
No 274
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.44 E-value=1.7e-08 Score=97.42 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=48.7
Q ss_pred cCCcEEEEeCCCCCCchhhcCC----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRKGGP----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 267 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~~~----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~ 267 (283)
++..|+++|+++...+...... .-...-.||+||.|+........+.+.+... ..+.+++.+||++|.|+++++
T Consensus 122 ~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~vSA~~g~gi~eL~ 199 (535)
T 3dpu_A 122 SSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFP--AIENRFHRISCKNGDGVESIA 199 (535)
T ss_dssp SEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCG--GGTTCEEECCC-----CTTHH
T ss_pred CcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHH--hcCCceEEEecCcccCHHHHH
Confidence 4578899998776433221100 0024558999999987654333333332221 234679999999999999999
Q ss_pred HHHHHHHHH
Q 023354 268 NHILQAWEA 276 (283)
Q Consensus 268 ~~l~~~~~~ 276 (283)
+++......
T Consensus 200 ~~l~~~~~~ 208 (535)
T 3dpu_A 200 KSLKSAVLH 208 (535)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 999887643
No 275
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.43 E-value=4.1e-08 Score=85.66 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=45.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHH---hcccCC-CcEE--------EEeecCC-CCCHHHHHHhccccCCc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLA--------AVTNDIF-TKEDGEFLMRNGALPEE 136 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~---g~~~~~-g~i~--------i~~~d~~-~~~~~~~~~~ig~v~q~ 136 (283)
.+|++|+|+||+||||||++++|+ |+..++ |.+. ..+.++. .....++++.+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 568999999999999999999999 877666 7766 5555553 23455677888888864
No 276
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.43 E-value=2.8e-07 Score=81.53 Aligned_cols=57 Identities=23% Similarity=0.157 Sum_probs=36.2
Q ss_pred ccCEEEEEcCCcccccCChHHHHhHHHHhh-cCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354 217 QADLLVINKTDLASAIGADLAVMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~-~~~~~i~~isa~~g~gi~~l~~~l~~~ 273 (283)
..-.+|+||+|++.......+.+...+... ..+.+++.+||++|.|++++++++...
T Consensus 193 ~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 193 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp SSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 345899999999764322223222110000 013467889999999999999988763
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.41 E-value=1.4e-07 Score=79.26 Aligned_cols=38 Identities=34% Similarity=0.557 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~ 118 (283)
.+|++++|+||||||||||+++|+|++.| .+.++..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--~i~~v~~d~ 41 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE--RVALLPMDH 41 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG--GEEEEEGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEecCc
Confidence 46899999999999999999999998765 455555443
No 278
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.40 E-value=5.6e-08 Score=89.78 Aligned_cols=55 Identities=15% Similarity=0.396 Sum_probs=42.9
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHhcccC--CCcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
..+|++++|+||||||||||+++|++++.| .|+|.+++.++.. .++..+++++|.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~----~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY----VFKHKKSIVNQR 189 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS----CCCCSSSEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh----hhccCceEEEee
Confidence 356899999999999999999999999986 4888777765432 123457788774
No 279
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.40 E-value=7.9e-08 Score=82.37 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=20.7
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHH-hcccC
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALC-KFLRD 107 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~-g~~~~ 107 (283)
-...++|.. +|++++|+||||||||||+++|+ +++++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 345677764 59999999999999999999999 98753
No 280
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.39 E-value=7.3e-07 Score=74.98 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeec
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND 117 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d 117 (283)
.+|++++|+||||||||||++.|++ .+.+.+.++..+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 5699999999999999999999999 444566666544
No 281
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.39 E-value=3.6e-08 Score=83.46 Aligned_cols=80 Identities=15% Similarity=0.020 Sum_probs=49.9
Q ss_pred cCCcEEEEeCCCCCC---chhhcCCc----ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354 192 ADYIIYIIDVSGGDK---IPRKGGPG----ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 192 ~~~~l~llDpt~g~~---l~~~~~~~----i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~ 264 (283)
++..++++|.+.... +....... -...-.+|+||+|+....-. +........ .+.+++.+|++++.|++
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~--~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK--AKSIVFHRK--KNLQYYDISAKSNYNFE 163 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSC--GGGCCHHHH--HTCEEEECBGGGTBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccccc--HHHHHHHHH--cCCEEEEEeCCCCCCHH
Confidence 467899999887421 11110000 02345899999998654211 111112222 24689999999999999
Q ss_pred HHHHHHHHHHH
Q 023354 265 EIVNHILQAWE 275 (283)
Q Consensus 265 ~l~~~l~~~~~ 275 (283)
+++++|.....
T Consensus 164 ~l~~~l~~~l~ 174 (221)
T 3gj0_A 164 KPFLWLARKLI 174 (221)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 282
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.38 E-value=4.6e-07 Score=88.48 Aligned_cols=83 Identities=25% Similarity=0.274 Sum_probs=54.7
Q ss_pred HhcCCcEEEEeCCCCCCchhhcC----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC--CCeEEEEeccCCCH
Q 023354 190 ELADYIIYIIDVSGGDKIPRKGG----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDG--GPFIFAQVKHGLGV 263 (283)
Q Consensus 190 al~~~~l~llDpt~g~~l~~~~~----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~--~~i~~isa~~g~gi 263 (283)
..+|..|+|+|++.+...+.... ......-.+++||.|+..+ ...+ ..+.+.+.... .+++++||++|.|+
T Consensus 95 ~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a--~~~~-v~~el~~~lg~~~~~vi~vSAktg~GI 171 (600)
T 2ywe_A 95 AACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA--DVDR-VKKQIEEVLGLDPEEAILASAKEGIGI 171 (600)
T ss_dssp HTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC--CHHH-HHHHHHHTSCCCGGGCEECBTTTTBSH
T ss_pred HhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc--CHHH-HHHHHHHhhCCCcccEEEEEeecCCCc
Confidence 34578999999988754322110 0113345899999999765 2323 23334443321 25899999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWE 275 (283)
Q Consensus 264 ~~l~~~l~~~~~ 275 (283)
+++++++....+
T Consensus 172 ~~Lle~I~~~lp 183 (600)
T 2ywe_A 172 EEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHHHHHSC
T ss_pred hHHHHHHHHhcc
Confidence 999999987664
No 283
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.38 E-value=1.1e-06 Score=82.76 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=54.7
Q ss_pred CCCcccCCchHHHHHHHHH---HhcCCcEEEEeCCCCCC-------chh-hc---CCccccc-CEEEEEcCCcccccC--
Q 023354 171 ADLLLCESGGDNLAANFSR---ELADYIIYIIDVSGGDK-------IPR-KG---GPGITQA-DLLVINKTDLASAIG-- 233 (283)
Q Consensus 171 ~d~~i~eSgGq~q~~~ia~---al~~~~l~llDpt~g~~-------l~~-~~---~~~i~~a-d~ivi~K~g~i~~~g-- 233 (283)
....++++.|+.+...... .-+|..|+++|++.+.. -+. +. ....... -.+++||.|+....-
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 3455667888765443332 23578999999887631 010 00 0011223 368999999864210
Q ss_pred ChHHHHhHHH----HhhcC----CCCeEEEEeccCCCHHHHHH
Q 023354 234 ADLAVMERDA----LRMRD----GGPFIFAQVKHGLGVEEIVN 268 (283)
Q Consensus 234 ~~~e~~~~~~----~~~~~----~~~i~~isa~~g~gi~~l~~ 268 (283)
...+...+.+ ....+ ..+++++||++|.|+.++.+
T Consensus 175 ~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 175 ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1112222222 12211 46899999999999998544
No 284
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.36 E-value=3.9e-07 Score=89.02 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=55.0
Q ss_pred HhcCCcEEEEeCCCCCCchhhcC----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcC--CCCeEEEEeccCCCH
Q 023354 190 ELADYIIYIIDVSGGDKIPRKGG----PGITQADLLVINKTDLASAIGADLAVMERDALRMRD--GGPFIFAQVKHGLGV 263 (283)
Q Consensus 190 al~~~~l~llDpt~g~~l~~~~~----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~--~~~i~~isa~~g~gi 263 (283)
..+|..|+|+|++.+...+.... ......-.+++||.|+..+ ...+.. +.+.+.+. ..+++++||++|.|+
T Consensus 93 ~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a--~~~~v~-~ei~~~lg~~~~~vi~vSAktg~GI 169 (599)
T 3cb4_D 93 AACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA--DPERVA-EEIEDIVGIDATDAVRCSAKTGVGV 169 (599)
T ss_dssp HHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC--CHHHHH-HHHHHHTCCCCTTCEEECTTTCTTH
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccc--cHHHHH-HHHHHHhCCCcceEEEeecccCCCc
Confidence 34588999999988754332110 0113345899999999765 233332 33433332 236899999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWE 275 (283)
Q Consensus 264 ~~l~~~l~~~~~ 275 (283)
+++++++....+
T Consensus 170 ~~Ll~~I~~~lp 181 (599)
T 3cb4_D 170 QDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHHHHSC
T ss_pred hhHHHHHhhcCC
Confidence 999999987764
No 285
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.36 E-value=4.3e-07 Score=78.03 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
+...|+|+|++|||||||++.|+|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 356899999999999999999999654
No 286
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.36 E-value=3.5e-08 Score=96.72 Aligned_cols=58 Identities=10% Similarity=0.014 Sum_probs=37.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccC-C-CcEEEEeecCCC--C-CHHHHHHhccccCCch
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFT--K-EDGEFLMRNGALPEER 137 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~-g~i~i~~~d~~~--~-~~~~~~~~ig~v~q~~ 137 (283)
.-+.++|+|||||||||||++|+|++.| + |.|.+.+.++.. . ....+++.+||++|+.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 106 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI 106 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Confidence 3356999999999999999999999877 5 888887766421 1 1123456799999864
No 287
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.36 E-value=2.6e-07 Score=78.30 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
.+|++++|+||||||||||+++|+|.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999999999996554
No 288
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.34 E-value=1.7e-07 Score=75.34 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY 109 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g 109 (283)
+|+.++|+||||||||||++++++.+.+.|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999887665
No 289
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.34 E-value=1.8e-07 Score=83.59 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=48.6
Q ss_pred cCCcEEEEeCCCCCCchh-------hcCC-cccccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCCC
Q 023354 192 ADYIIYIIDVSGGDKIPR-------KGGP-GITQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGP 251 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~-------~~~~-~i~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~~ 251 (283)
++..++++|.+....+.. .... .-..+-.+|+||+|+.... .-..+.... +.+.....+
T Consensus 227 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 305 (332)
T 2wkq_A 227 TDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA-MAKEIGAVK 305 (332)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH-HHHHTTCSE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHH-HHHHcCCcE
Confidence 357889999877422111 0000 0033458999999986431 011111111 122222248
Q ss_pred eEEEEeccCCCHHHHHHHHHHHH
Q 023354 252 FIFAQVKHGLGVEEIVNHILQAW 274 (283)
Q Consensus 252 i~~isa~~g~gi~~l~~~l~~~~ 274 (283)
++++||++|.|+++++++|....
T Consensus 306 ~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 306 YLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHHH
Confidence 89999999999999999997754
No 290
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.34 E-value=1.7e-07 Score=89.42 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=51.6
Q ss_pred CCCcccCCchHHHHHHHHH---HhcCCcEEEEeCCCCCC-----c--hhhc----CCcccc-cCEEEEEcCCcccccCCh
Q 023354 171 ADLLLCESGGDNLAANFSR---ELADYIIYIIDVSGGDK-----I--PRKG----GPGITQ-ADLLVINKTDLASAIGAD 235 (283)
Q Consensus 171 ~d~~i~eSgGq~q~~~ia~---al~~~~l~llDpt~g~~-----l--~~~~----~~~i~~-ad~ivi~K~g~i~~~g~~ 235 (283)
....++++.|+.+...... .-+|..|+|+|++.+.. + +... ...... .-.|++||+|++.+....
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 3455667777654333322 23478999999887621 1 1000 001121 247789999987642222
Q ss_pred HHHHhHHHHhh----cC---CCCeEEEEeccCCCHHH
Q 023354 236 LAVMERDALRM----RD---GGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 236 ~e~~~~~~~~~----~~---~~~i~~isa~~g~gi~~ 265 (283)
.+...+.+... .. ..+++++||++|.|+++
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 22222222222 11 46789999999999874
No 291
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.34 E-value=1.2e-07 Score=82.57 Aligned_cols=82 Identities=9% Similarity=0.059 Sum_probs=47.2
Q ss_pred cCCcEEEEeCCCCCCchh--------hcCCcccccCEEEEE-cCCcccccCChHHH--------HhHHHHhhcC----CC
Q 023354 192 ADYIIYIIDVSGGDKIPR--------KGGPGITQADLLVIN-KTDLASAIGADLAV--------MERDALRMRD----GG 250 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~--------~~~~~i~~ad~ivi~-K~g~i~~~g~~~e~--------~~~~~~~~~~----~~ 250 (283)
++.+|+|+|++....... ..+.....+..++++ |.|+... ...+. +...+..... ..
T Consensus 106 ~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 183 (260)
T 2xtp_A 106 PHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAACGGRICAFN 183 (260)
T ss_dssp CSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHTTTCEEECC
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHHhCCeEEEec
Confidence 468899999875211111 011111345678888 9998732 22221 1112222111 22
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 251 PFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 251 ~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
+ +.+||+++.|+++++++|......
T Consensus 184 ~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 184 N-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp T-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cccccccHHHHHHHHHHHHHHHHh
Confidence 2 678999999999999999887654
No 292
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.34 E-value=2.9e-07 Score=81.11 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=38.5
Q ss_pred CCcEEEEeCCC-CCCc-----hhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhh--cCCCCeEEEEeccCCCHH
Q 023354 193 DYIIYIIDVSG-GDKI-----PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVKHGLGVE 264 (283)
Q Consensus 193 ~~~l~llDpt~-g~~l-----~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~--~~~~~i~~isa~~g~gi~ 264 (283)
+..+++++++. +... .+.... ...-.+|+||+|++.. ...+.+.+.+.+. ..+.+++.+|++++.|++
T Consensus 117 ~~~l~~i~~~~~~~~~~d~~~l~~l~~--~~pvi~V~nK~D~~~~--~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~ 192 (274)
T 3t5d_A 117 QCCLYFIAPSGHGLKPLDIEFMKRLHE--KVNIIPLIAKADTLTP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN 192 (274)
T ss_dssp CEEEEEECSCCSSCCHHHHHHHHHHTT--TSCEEEEESSGGGSCH--HHHHHHHHHHHHHHHHTTCCCCCC---------
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHhc--cCCEEEEEeccCCCCH--HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHH
Confidence 45788888765 3211 111111 3455899999998744 2223332333322 246678889999999999
Q ss_pred HHHHHHHHHHH
Q 023354 265 EIVNHILQAWE 275 (283)
Q Consensus 265 ~l~~~l~~~~~ 275 (283)
++.++|....+
T Consensus 193 ~l~~~l~~~~p 203 (274)
T 3t5d_A 193 KLVKKIKDRLP 203 (274)
T ss_dssp --CHHHHHTCS
T ss_pred HHHHHHhcCCC
Confidence 99999887543
No 293
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.34 E-value=5.1e-07 Score=87.01 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=23.2
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 251 PFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 251 ~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
|++++||++|.|+++|++++....+.
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~ 277 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPP 277 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred EEEeccccCCccHHHHHHHHHHhCCC
Confidence 78899999999999999999887653
No 294
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.33 E-value=2.3e-07 Score=78.53 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=38.0
Q ss_pred Ccccccc--cCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC
Q 023354 71 PILSRNF--NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (283)
Q Consensus 71 ~~~~~~~--~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~ 118 (283)
.++...+ -.+|++++|+||||||||||++.|++.+.+. +.+.+.+.+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 3444443 2479999999999999999999999877654 7888877654
No 295
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.33 E-value=2.4e-07 Score=80.46 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+...|+|+|++|||||||+|.|+|.-
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999999853
No 296
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.32 E-value=2.2e-07 Score=82.17 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=46.5
Q ss_pred CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
.+.+.++..+ | ++|+||||||||||+++|++.+.+ +.+.+.+.++......+..+.+++++|.
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~ 98 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQR 98 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence 3455566544 5 999999999999999999998765 5777777776554444555667777765
No 297
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.31 E-value=1.7e-07 Score=77.75 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=46.8
Q ss_pred cCCcEEEEeCCCC--CC---chhhcC----CcccccCEEEEEcCCcccccC---ChHHHHhH---HHHhh---cCCCCeE
Q 023354 192 ADYIIYIIDVSGG--DK---IPRKGG----PGITQADLLVINKTDLASAIG---ADLAVMER---DALRM---RDGGPFI 253 (283)
Q Consensus 192 ~~~~l~llDpt~g--~~---l~~~~~----~~i~~ad~ivi~K~g~i~~~g---~~~e~~~~---~~~~~---~~~~~i~ 253 (283)
++..|+++|.+.. .. +..... ..-...-.+|.||+|++.... ...++... .+.+. ..+.+++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 175 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFY 175 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceE
Confidence 5788999998774 11 110000 001334588999999865310 01111111 11111 2356789
Q ss_pred EEEeccCCCHHHHHHHHHHH
Q 023354 254 FAQVKHGLGVEEIVNHILQA 273 (283)
Q Consensus 254 ~isa~~g~gi~~l~~~l~~~ 273 (283)
++||++ .|++++++.+.+.
T Consensus 176 e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 176 LTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp EECTTS-THHHHHHHHHHHH
T ss_pred EEEech-hhHHHHHHHHHHH
Confidence 999999 9999999988653
No 298
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.31 E-value=9.3e-07 Score=82.39 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=58.6
Q ss_pred CcccCCchHHHHHHHH-HH--hcCCcEEEEeCCCCC-Cchhhc----CCcccc-cCEEEEEcCCcccccCChHHHHhHHH
Q 023354 173 LLLCESGGDNLAANFS-RE--LADYIIYIIDVSGGD-KIPRKG----GPGITQ-ADLLVINKTDLASAIGADLAVMERDA 243 (283)
Q Consensus 173 ~~i~eSgGq~q~~~ia-~a--l~~~~l~llDpt~g~-~l~~~~----~~~i~~-ad~ivi~K~g~i~~~g~~~e~~~~~~ 243 (283)
..++++.|+....... +. .+|..|+++|++.+. ..+... ...+.. .-.+++||.|+.... ..+...+.+
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~--~~~~~~~~i 162 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE--KALENYRQI 162 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH--HHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH--HHHHHHHHH
Confidence 3455577765432222 21 247899999998764 211110 001122 235779999987542 111111222
Q ss_pred Hhh-----cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 244 LRM-----RDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 244 ~~~-----~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.+. ....+++++|+++|.|+++|+++|....+
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 222 13578999999999999999999987543
No 299
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.31 E-value=1.7e-06 Score=80.57 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=53.9
Q ss_pred CcccCCchHHHHHHHH-HH--hcCCcEEEEeCCCCC-Cchh-hc---CCcccc-cCEEEEEcCCcccccC--ChHHHHhH
Q 023354 173 LLLCESGGDNLAANFS-RE--LADYIIYIIDVSGGD-KIPR-KG---GPGITQ-ADLLVINKTDLASAIG--ADLAVMER 241 (283)
Q Consensus 173 ~~i~eSgGq~q~~~ia-~a--l~~~~l~llDpt~g~-~l~~-~~---~~~i~~-ad~ivi~K~g~i~~~g--~~~e~~~~ 241 (283)
..++++.|+..-.... +. .+|..|+++|++.+. ..+. +. ...+.. .-.+++||.|+..... ...+.+.+
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 3455577765433222 11 236889999988763 2111 00 001111 2368999999976531 12222222
Q ss_pred HHHhh-cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 242 DALRM-RDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 242 ~~~~~-~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.+... ....+++++||++|.|+++|+++|....+
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22221 23578999999999999999999987543
No 300
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.31 E-value=4e-07 Score=75.07 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEE
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAV 114 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~ 114 (283)
+|++++|+||+|||||||+++|++.+++. +.+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 58899999999999999999999987642 555443
No 301
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.28 E-value=1.9e-06 Score=85.74 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.4
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 78 NERAFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
..++..|+|+|.+|||||||+|+|+|.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999999999985
No 302
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.27 E-value=2e-08 Score=96.83 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=50.5
Q ss_pred cCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhh-------cCCCCeEEEEeccC
Q 023354 192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRM-------RDGGPFIFAQVKHG 260 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~-------~~~~~i~~isa~~g 260 (283)
+|..|+++|++.+...+... .......-.+++||+|+...... . ....+... ....+++++||++|
T Consensus 76 aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~--~-v~~~l~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 76 TDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE--K-VKKELLAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp BSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC--S-SSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH--H-HHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence 57889999988764322110 00112345889999998754211 1 11112211 12347889999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAWE 275 (283)
Q Consensus 261 ~gi~~l~~~l~~~~~ 275 (283)
.|+++|+++|....+
T Consensus 153 ~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 153 ENMMALAEATIALAE 167 (537)
T ss_dssp CSSHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHhhh
Confidence 999999999987764
No 303
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.26 E-value=1.7e-07 Score=87.28 Aligned_cols=25 Identities=40% Similarity=0.417 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
...++|+|..|+|||||++.|++..
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~ 35 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVA 35 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhh
Confidence 5689999999999999999999853
No 304
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.24 E-value=6.1e-07 Score=82.33 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=31.5
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEEee
Q 023354 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTN 116 (283)
Q Consensus 78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~~~ 116 (283)
..++.+++|+|||||||||||++|+|++.++ +.|.....
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed 160 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED 160 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC
Confidence 3567799999999999999999999999875 45544443
No 305
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.24 E-value=4.7e-09 Score=87.54 Aligned_cols=82 Identities=24% Similarity=0.206 Sum_probs=43.2
Q ss_pred cCCcEEEEeCCCCCCch---hhc---CC--cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIP---RKG---GP--GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~---~~~---~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
++.+++++|++....+. ... .. .-...-.+|+||+|+........+...... ...+.+++++|++++.|+
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~--~~~~~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA--DSLGIPFLETSAKNATNV 183 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH--HTTTCCBCCCCC---HHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH--HHcCCeEEEEECCCCCCH
Confidence 35678888987653211 100 00 012344788999998654222212222222 223578999999999999
Q ss_pred HHHHHHHHHHHH
Q 023354 264 EEIVNHILQAWE 275 (283)
Q Consensus 264 ~~l~~~l~~~~~ 275 (283)
++++++|...+.
T Consensus 184 ~~l~~~l~~~l~ 195 (199)
T 3l0i_B 184 EQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHTTTTT
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 306
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.24 E-value=1.1e-06 Score=80.97 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=50.4
Q ss_pred HhcCCcEEEEeCCCCCCchhhc----CCcccccC-EEEEE-cCCcccccCChHHHHhHHHHhhc-----CCCCeEE--EE
Q 023354 190 ELADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVIN-KTDLASAIGADLAVMERDALRMR-----DGGPFIF--AQ 256 (283)
Q Consensus 190 al~~~~l~llDpt~g~~l~~~~----~~~i~~ad-~ivi~-K~g~i~~~g~~~e~~~~~~~~~~-----~~~~i~~--is 256 (283)
..+|..|+++| +.+...+.+. ........ .+++| |.|+ .. ...+...+.+.+.. ...|+++ +|
T Consensus 82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~--~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 82 NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM--HAIDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH--HHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH--HHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 34678899999 6653211110 00112334 78899 9998 32 11122222233222 2468999 99
Q ss_pred ecc---CCCHHHHHHHHHHHHHH
Q 023354 257 VKH---GLGVEEIVNHILQAWEA 276 (283)
Q Consensus 257 a~~---g~gi~~l~~~l~~~~~~ 276 (283)
|++ +.|+++|+++|....+.
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhccc
Confidence 999 99999999999877653
No 307
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.23 E-value=3.4e-07 Score=76.66 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=36.1
Q ss_pred cccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcE--EEEeecC
Q 023354 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSL--AAVTNDI 118 (283)
Q Consensus 73 ~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i--~i~~~d~ 118 (283)
.+..+. .+|++++|+||+|||||||+++|++.+...|.+ .+++.++
T Consensus 16 ~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 16 DRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 344444 469999999999999999999999988744776 6665544
No 308
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.22 E-value=9e-07 Score=74.23 Aligned_cols=44 Identities=30% Similarity=0.377 Sum_probs=36.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE 122 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~ 122 (283)
.++.+++|+|++|||||||++.|++++.+. |.+.+.+.|.....
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 458999999999999999999999998765 78888777665433
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.22 E-value=4.8e-07 Score=74.79 Aligned_cols=36 Identities=25% Similarity=0.134 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~ 118 (283)
|++++|+||||||||||+++|++. ..|.+.+.+.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~--~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ--LDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH--SSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc--cCCeEEEcccch
Confidence 578999999999999999999872 236777776544
No 310
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.21 E-value=2e-06 Score=85.50 Aligned_cols=27 Identities=11% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 250 GPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 250 ~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
.|+++.||.++.|++.|++.+....+.
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs 282 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYLPS 282 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCCC
Confidence 578999999999999999999988753
No 311
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.21 E-value=7.5e-07 Score=85.50 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=36.4
Q ss_pred cccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (283)
Q Consensus 73 ~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d 117 (283)
..+++. .+|..++|+|||||||||||++|+|+++|+ |.+.+.+..
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 344444 458899999999999999999999999987 777776543
No 312
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.21 E-value=1.2e-06 Score=81.35 Aligned_cols=104 Identities=12% Similarity=0.105 Sum_probs=58.7
Q ss_pred CCCcccCCchHHHHHHHHHH-h--cCCcEEEEeCCCCCCchhhc----CCcccccC-EEEEEcCCcccccCChHHHH---
Q 023354 171 ADLLLCESGGDNLAANFSRE-L--ADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGADLAVM--- 239 (283)
Q Consensus 171 ~d~~i~eSgGq~q~~~ia~a-l--~~~~l~llDpt~g~~l~~~~----~~~i~~ad-~ivi~K~g~i~~~g~~~e~~--- 239 (283)
....++++.|+.+....... + +|..|+++|++.+...+... ........ .+++||.|+.... ...+..
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~-~~~~~~~~~ 144 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS-EMVELVELE 144 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH-HHHHHHHHH
Confidence 34445667777553332222 2 46889999998874322110 00112333 5789999987421 111222
Q ss_pred -hHHHHhhcC---CCCeEEEEeccCCC----------HHHHHHHHHHHHH
Q 023354 240 -ERDALRMRD---GGPFIFAQVKHGLG----------VEEIVNHILQAWE 275 (283)
Q Consensus 240 -~~~~~~~~~---~~~i~~isa~~g~g----------i~~l~~~l~~~~~ 275 (283)
.+.+..... ..+++++||++|.+ +.+|+++|....+
T Consensus 145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 222222222 36899999999764 8888888877553
No 313
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.20 E-value=2.5e-06 Score=83.25 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=51.1
Q ss_pred cCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCC-------------hH---HHHh-------HHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGA-------------DL---AVME-------RDAL 244 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~-------------~~---e~~~-------~~~~ 244 (283)
+|..|+++|++.|...+... ......+-.+++||+|+...... .. +.+. ..+.
T Consensus 94 aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~ 173 (594)
T 1g7s_A 94 ADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLH 173 (594)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46889999998874322110 00113345899999999742110 00 1111 1111
Q ss_pred hh-------------cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 245 RM-------------RDGGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 245 ~~-------------~~~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
+. ....|++++||++|.|+++|+++|....+
T Consensus 174 e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 174 EEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11 12247899999999999999999987765
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.16 E-value=1.1e-06 Score=73.18 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~ 108 (283)
.+|++++|+||+|||||||+++|++++.|+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 358999999999999999999999998664
No 315
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.16 E-value=1.3e-07 Score=86.43 Aligned_cols=55 Identities=22% Similarity=0.146 Sum_probs=34.5
Q ss_pred cCEEEEEcCCcccccCChHHHHhHHHHhh-cCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354 218 ADLLVINKTDLASAIGADLAVMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQ 272 (283)
Q Consensus 218 ad~ivi~K~g~i~~~g~~~e~~~~~~~~~-~~~~~i~~isa~~g~gi~~l~~~l~~ 272 (283)
.-.+|+||+|++.......+.+....... ..+.+++.+|++++.|++++++++..
T Consensus 199 ~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 199 RTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 44899999999754221222222110000 11346788999999999999888865
No 316
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.16 E-value=1.2e-06 Score=73.95 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
.+|++++|+||||||||||+++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 56999999999999999999999998875
No 317
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.14 E-value=1.1e-07 Score=89.26 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=50.2
Q ss_pred cCCcEEEEeCCCCCCchhh--cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354 192 ADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~--~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~ 269 (283)
++..|+++|+......... ........-.+|+||.|+...... +... . .....+.+++.+|+++|.|+++++++
T Consensus 114 aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~-~-l~~~~g~~v~~vSAktg~gI~eL~~~ 189 (423)
T 3qq5_A 114 ADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKG-L-YESRYEAKVLLVSALQKKGFDDIGKT 189 (423)
T ss_dssp CSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT--HHHH-H-SSCCTTCCCCCCSSCCTTSTTTHHHH
T ss_pred CCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH--HHHH-H-HHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 5678899998221110000 000113455899999999866322 2211 1 22234678999999999999999999
Q ss_pred HHHHHH
Q 023354 270 ILQAWE 275 (283)
Q Consensus 270 l~~~~~ 275 (283)
|.+..+
T Consensus 190 L~~~l~ 195 (423)
T 3qq5_A 190 ISEILP 195 (423)
T ss_dssp HHHHSC
T ss_pred HHHhhh
Confidence 988763
No 318
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.14 E-value=5.6e-07 Score=77.77 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---hcccCC-CcEEEE
Q 023354 80 RAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLAAV 114 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~---g~~~~~-g~i~i~ 114 (283)
++++++|+||||||||||+++|+ |+..++ |.+.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 47899999999999999999999 877665 665443
No 319
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.14 E-value=2.5e-06 Score=76.28 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=87.6
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHhcccC-CC-cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC--ChH
Q 023354 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA--AIR 152 (283)
Q Consensus 77 ~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~g-~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~--~~~ 152 (283)
+..+|.+++|+|+|||||||+++.|++.+.+ .| +|.+++.|.......+.....+ ...+.+.. ...
T Consensus 101 ~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~----------~~~gl~~~~~~~~ 170 (296)
T 2px0_A 101 EPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYA----------ELLQAPLEVCYTK 170 (296)
T ss_dssp CCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHH----------TTTTCCCCBCSSH
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHH----------HhcCCCeEecCCH
Confidence 3457899999999999999999999999986 47 8999998875433221111100 00111110 111
Q ss_pred HHHHHHHHHHHHccccccCCCcccCCchH-----HHHHHHHHHhc----CCcEEEEeCCCCC-Cchh---hcCCcccccC
Q 023354 153 EDISINLGPLEELSNLFKADLLLCESGGD-----NLAANFSRELA----DYIIYIIDVSGGD-KIPR---KGGPGITQAD 219 (283)
Q Consensus 153 ~~~~~~~~~l~~l~~~~~~d~~i~eSgGq-----~q~~~ia~al~----~~~l~llDpt~g~-~l~~---~~~~~i~~ad 219 (283)
..+ ...+..+ ..+|.++.++.|. .+...+...+. +..++++|.+.+. ++.. ... .+. ..
T Consensus 171 ~~l---~~al~~~---~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~-~~ 242 (296)
T 2px0_A 171 EEF---QQAKELF---SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVP-VN 242 (296)
T ss_dssp HHH---HHHHHHG---GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSC-CC
T ss_pred HHH---HHHHHHh---cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCC-CC
Confidence 111 2333333 4578877774442 12222332232 2458889887662 2221 111 122 35
Q ss_pred EEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354 220 LLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 220 ~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi 263 (283)
.++++|.|.-...| ..+ . +.. ..+.|+.++. .|+++
T Consensus 243 giVltk~D~~~~~g---~~~-~-~~~-~~~~pi~~i~--~ge~v 278 (296)
T 2px0_A 243 QYIFTKIDETTSLG---SVF-N-ILA-ESKIGVGFMT--NGQNV 278 (296)
T ss_dssp EEEEECTTTCSCCH---HHH-H-HHH-TCSCCCSEEC--CSSCT
T ss_pred EEEEeCCCcccchh---HHH-H-HHH-HHCcCEEEEE--CCCCC
Confidence 78899988754322 222 1 122 3467776664 45555
No 320
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.13 E-value=1.4e-06 Score=74.64 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~ 118 (283)
.+|.+++|.|++|||||||+++|+++ .|.+.+.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~ 54 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPV 54 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCH
Confidence 46999999999999999999999997 57788877654
No 321
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.11 E-value=7.7e-06 Score=81.43 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=23.3
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 250 GPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 250 ~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.|+++.|++++.|++.|++.+....+
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lP 287 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLP 287 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCC
Confidence 57999999999999999999988764
No 322
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.11 E-value=9.7e-07 Score=81.05 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
..|+|+|++|+|||||++.|++...
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999988643
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.11 E-value=1.9e-06 Score=70.08 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=37.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHH-hccccCCc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEE 136 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~-~ig~v~q~ 136 (283)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.. ...+.+ ..|+.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 358899999999999999999999865 667777665542 112222 35666554
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.10 E-value=1.6e-06 Score=73.04 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
+|.+++|+||+|||||||+++|++.++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 688999999999999999999999865
No 325
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.08 E-value=3.6e-06 Score=83.64 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354 250 GPFIFAQVKHGLGVEEIVNHILQAWEA 276 (283)
Q Consensus 250 ~~i~~isa~~g~gi~~l~~~l~~~~~~ 276 (283)
.|+++.|+.++.|++.|++.+...++.
T Consensus 254 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs 280 (693)
T 2xex_A 254 YPVLCGTAFKNKGVQLMLDAVIDYLPS 280 (693)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred eeEEEeecccCcCHHHHHHHHHHHCCC
Confidence 478899999999999999999988753
No 326
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.08 E-value=5.9e-07 Score=88.07 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=52.2
Q ss_pred CCcccCCchHHHHHHHHHH---hcCCcEEEEeCCCCC-----Cc--hh-hc---CCccccc-CEEEEEcCCcccccCChH
Q 023354 172 DLLLCESGGDNLAANFSRE---LADYIIYIIDVSGGD-----KI--PR-KG---GPGITQA-DLLVINKTDLASAIGADL 236 (283)
Q Consensus 172 d~~i~eSgGq~q~~~ia~a---l~~~~l~llDpt~g~-----~l--~~-~~---~~~i~~a-d~ivi~K~g~i~~~g~~~ 236 (283)
...++++.|+.+....... .++..|+|+|++.+. .+ +. +. ....... -.|++||+|++.......
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~ 325 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 325 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHH
Confidence 4456668887554433322 236889999987641 00 00 00 0011112 367899999876321222
Q ss_pred HHHhHHHHh----hcC---CCCeEEEEeccCCCHHHH
Q 023354 237 AVMERDALR----MRD---GGPFIFAQVKHGLGVEEI 266 (283)
Q Consensus 237 e~~~~~~~~----~~~---~~~i~~isa~~g~gi~~l 266 (283)
+.....+.. ... ..+++++||++|.|+.++
T Consensus 326 ~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 326 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 222222222 111 468999999999999864
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.06 E-value=3.9e-06 Score=75.85 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc--CC-CcEEEEeecCCCCCHH
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDG 124 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~--~~-g~i~i~~~d~~~~~~~ 124 (283)
..+++|+||+|||||||+++|.+++. ++ |.+.++..|.......
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~ 138 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNA 138 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchh
Confidence 45899999999999999999999987 34 7888888776554443
No 328
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.06 E-value=1.6e-07 Score=89.77 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=47.0
Q ss_pred cCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCCh-HHHHhH-HH-Hhh-cCCCCeEEEEeccCCCH
Q 023354 192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGAD-LAVMER-DA-LRM-RDGGPFIFAQVKHGLGV 263 (283)
Q Consensus 192 ~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~-~e~~~~-~~-~~~-~~~~~i~~isa~~g~gi 263 (283)
+|..++++|++.+...+... .......-.+++||.|+..+.... .+.+.. .. .+. ....+++++||++|.|+
T Consensus 75 aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 75 TDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp CSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred CCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 46789999987763221100 001123458999999986542110 000000 00 000 11368999999999999
Q ss_pred HHHHHHHHH
Q 023354 264 EEIVNHILQ 272 (283)
Q Consensus 264 ~~l~~~l~~ 272 (283)
++|++++..
T Consensus 155 ~eLle~I~~ 163 (501)
T 1zo1_I 155 DELLDAILL 163 (501)
T ss_dssp TTHHHHTTT
T ss_pred chhhhhhhh
Confidence 999999864
No 329
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.06 E-value=2.2e-06 Score=73.09 Aligned_cols=58 Identities=21% Similarity=0.106 Sum_probs=38.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHh--cccC-----CC-cEEEEeecCCCC-CHHHHHHhccccCCc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCK--FLRD-----KY-SLAAVTNDIFTK-EDGEFLMRNGALPEE 136 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g--~~~~-----~g-~i~i~~~d~~~~-~~~~~~~~ig~v~q~ 136 (283)
.+|++++|+||||||||||++.|++ ++++ .+ .+.+.+.+.... ...++++.+++.++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 88 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD 88 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH
Confidence 4799999999999999999999999 4544 33 444444332111 123345567776543
No 330
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.05 E-value=7.6e-07 Score=86.97 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
...|+|+|..|+|||||++.|++.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 331
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.05 E-value=3.3e-06 Score=75.37 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=41.3
Q ss_pred ccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (283)
Q Consensus 73 ~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~ 120 (283)
..++|. ++++++|+|+||+||||++..|++++.+. +++.+++.|+..
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 456666 89999999999999999999999999876 899999988754
No 332
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.03 E-value=2.1e-06 Score=76.91 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
+.+|+|+|++|+|||||++.+++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999998875
No 333
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=2.4e-06 Score=71.39 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=24.2
Q ss_pred CCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 67 RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 67 ~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
...+++++++|.. ++.+++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3356788999985 48999999999999999999999865
No 334
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.01 E-value=2.7e-06 Score=85.00 Aligned_cols=79 Identities=18% Similarity=0.065 Sum_probs=47.6
Q ss_pred CCcEEEEeCCCCCCch------hhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHh-hcCCCCeEEEEeccCCCHHH
Q 023354 193 DYIIYIIDVSGGDKIP------RKGGPGITQADLLVINKTDLASAIGADLAVMERDALR-MRDGGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 193 ~~~l~llDpt~g~~l~------~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~-~~~~~~i~~isa~~g~gi~~ 265 (283)
+.+++|+|++.+.... .... .....-.+|+||+|++................ ...+.+++.+||++|.|+++
T Consensus 189 DlIL~VVDAs~~~~~~d~l~ll~~L~-~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~Gvde 267 (772)
T 3zvr_A 189 CLILAVSPANSDLANSDALKIAKEVD-PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKD 267 (772)
T ss_dssp EEEEEEEETTSCSSSCHHHHHHHHHC-TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEE
T ss_pred cEEEEEEcCCCCcchhHHHHHHHHHH-hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchh
Confidence 4678889987642211 1111 11345589999999986533222222110000 01345788899999999999
Q ss_pred HHHHHHH
Q 023354 266 IVNHILQ 272 (283)
Q Consensus 266 l~~~l~~ 272 (283)
|++.+..
T Consensus 268 L~eaI~~ 274 (772)
T 3zvr_A 268 ITAALAA 274 (772)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 335
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.01 E-value=6.9e-06 Score=71.43 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=48.8
Q ss_pred cCCcEEEEeCCCC--CCchh---hcC---C---cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354 192 ADYIIYIIDVSGG--DKIPR---KGG---P---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG 260 (283)
Q Consensus 192 ~~~~l~llDpt~g--~~l~~---~~~---~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g 260 (283)
++..|+++|.+.. ..+.. ... . .....-.||.||+|+.... ..+.... +.....+.+++++||+++
T Consensus 163 ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~--~v~~~~~-~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER--YIRDAHT-FALSKKNLQVVETSARSN 239 (255)
T ss_dssp CCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH--HHHHHHH-HHHTSSSCCEEECBTTTT
T ss_pred CCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH--HHHHHHH-HHHhcCCCeEEEEECCCC
Confidence 4788999998764 32211 100 0 0123458999999985331 1121111 222224678999999999
Q ss_pred CCHHHHHHHHHHHH
Q 023354 261 LGVEEIVNHILQAW 274 (283)
Q Consensus 261 ~gi~~l~~~l~~~~ 274 (283)
.|+++++++|....
T Consensus 240 ~gv~elf~~l~~~l 253 (255)
T 3c5h_A 240 VNVDLAFSTLVQLI 253 (255)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999997754
No 336
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.00 E-value=5.2e-06 Score=85.96 Aligned_cols=103 Identities=11% Similarity=0.081 Sum_probs=58.3
Q ss_pred CCCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCchhhc----CCcccccC-EEEEEcCCcccccCChHHHH---
Q 023354 171 ADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGADLAVM--- 239 (283)
Q Consensus 171 ~d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l~~~~----~~~i~~ad-~ivi~K~g~i~~~g~~~e~~--- 239 (283)
....++++.|+.+-......- +|..|+|+|++.+...+... ........ .|++||.|+.... ...+..
T Consensus 359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~-e~le~i~eE 437 (1289)
T 3avx_A 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE-ELLELVEME 437 (1289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH-HHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch-hhHHHHHHH
Confidence 344566688876644333222 36899999998874222110 00112332 6789999987421 111212
Q ss_pred -hHHHHhhcC---CCCeEEEEeccC--------CCHHHHHHHHHHHH
Q 023354 240 -ERDALRMRD---GGPFIFAQVKHG--------LGVEEIVNHILQAW 274 (283)
Q Consensus 240 -~~~~~~~~~---~~~i~~isa~~g--------~gi~~l~~~l~~~~ 274 (283)
.+.+....+ ..|++++|+++| .|+.+|+++|....
T Consensus 438 i~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 222222222 378999999999 46778888777643
No 337
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.99 E-value=4.1e-08 Score=92.43 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~ 120 (283)
..+++|+|++|+||||++..|++.+... .++.++..|+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 4689999999999999999999988755 688888888754
No 338
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.98 E-value=1.9e-06 Score=80.89 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=50.0
Q ss_pred CcccCCchHHHHH-HHHH--HhcCCcEEEEeCCCCCCchhhc----CCccccc-CEEEEEcCCcccccCChHHHHhHHHH
Q 023354 173 LLLCESGGDNLAA-NFSR--ELADYIIYIIDVSGGDKIPRKG----GPGITQA-DLLVINKTDLASAIGADLAVMERDAL 244 (283)
Q Consensus 173 ~~i~eSgGq~q~~-~ia~--al~~~~l~llDpt~g~~l~~~~----~~~i~~a-d~ivi~K~g~i~~~g~~~e~~~~~~~ 244 (283)
..++++.|+.+.. ...+ ..+|..|+|+|++.+...+... ....... -.+++||+|+..+.....+.....+.
T Consensus 106 ~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~ 185 (434)
T 1zun_B 106 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYL 185 (434)
T ss_dssp EEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHH
Confidence 4455667754321 1122 2347899999998874221110 0011222 36789999987541111111222222
Q ss_pred ---hhcC----CCCeEEEEeccCCCHHH
Q 023354 245 ---RMRD----GGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 245 ---~~~~----~~~i~~isa~~g~gi~~ 265 (283)
+... ..+++++||++|.|+++
T Consensus 186 ~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 186 KFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp HHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHHHHhCCCccCceEEEEeccCCCCccc
Confidence 1121 26789999999999986
No 339
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.98 E-value=4.2e-06 Score=68.52 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDK 108 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~ 108 (283)
+++|+||||||||||+++|++++.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 89999999999999999999987653
No 340
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.97 E-value=1.1e-05 Score=82.35 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=61.9
Q ss_pred HHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhcC---CcEEEEe-CCCCCCchh------------hcCCc----
Q 023354 157 INLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELAD---YIIYIID-VSGGDKIPR------------KGGPG---- 214 (283)
Q Consensus 157 ~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~~---~~l~llD-pt~g~~l~~------------~~~~~---- 214 (283)
...+.|..+++.+. .++.+.+ ||||+||+.||++|+. +.++|+| ||++++... ..+.+
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34556777776553 5777777 9999999999999984 3477777 999975321 11222
Q ss_pred ------ccccCEEEEE------cCCcccccCChHHHHh
Q 023354 215 ------ITQADLLVIN------KTDLASAIGADLAVME 240 (283)
Q Consensus 215 ------i~~ad~ivi~------K~g~i~~~g~~~e~~~ 240 (283)
+..||+|+++ +.|++++.|++.+++.
T Consensus 523 tHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 523 EHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred eCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 2569999999 8999999998887654
No 341
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.96 E-value=3.5e-06 Score=68.22 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
+.+++|+|++|||||||+++|++.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999764
No 342
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.94 E-value=5.1e-06 Score=77.08 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g 103 (283)
.+|.+++|+|+||||||||+|+|+|
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999999999
No 343
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.92 E-value=9.2e-06 Score=78.25 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 250 GPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 250 ~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.|+++.||.++.|++.|++.+....+
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P 277 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAP 277 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCC
Confidence 47888999999999999999988765
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.92 E-value=1.8e-06 Score=74.76 Aligned_cols=44 Identities=27% Similarity=0.221 Sum_probs=33.3
Q ss_pred cccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354 72 ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (283)
Q Consensus 72 ~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~ 118 (283)
+.+.++..+ | +.|+||||+|||||+++|++.+. .+.+.+.+.++
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~ 85 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF 85 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHH
Confidence 445555544 5 99999999999999999999764 46676666554
No 345
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.92 E-value=4.8e-06 Score=80.57 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=23.2
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 250 GPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 250 ~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
.|+++.||+++.|+..|++.+...++
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~P 294 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAP 294 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred ceeeecccccCcCHHHHHHHHHHhCC
Confidence 47888999999999999999998865
No 346
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.91 E-value=1.9e-06 Score=75.77 Aligned_cols=44 Identities=27% Similarity=0.221 Sum_probs=33.3
Q ss_pred cccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354 72 ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (283)
Q Consensus 72 ~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~ 118 (283)
+.+.++..+ | ++|+||||+|||||+++|++.+. .+.+.+.+.++
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~ 109 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF 109 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHH
Confidence 344555544 5 89999999999999999999864 46677766554
No 347
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.89 E-value=4.7e-06 Score=80.63 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C-cEEEEe
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVT 115 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g-~i~i~~ 115 (283)
.+|++++|+|+||||||||+++|++.+.+. | .+.+.+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD 405 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD 405 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC
Confidence 479999999999999999999999999876 4 576443
No 348
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.88 E-value=6e-06 Score=81.31 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354 249 GGPFIFAQVKHGLGVEEIVNHILQAWE 275 (283)
Q Consensus 249 ~~~i~~isa~~g~gi~~l~~~l~~~~~ 275 (283)
..|++..|++++.|++.|++.+...++
T Consensus 212 ~~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 212 LFPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp CCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred cccccccccccCCCchhHhhhhhcccc
Confidence 468889999999999999999987654
No 349
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.88 E-value=3.4e-06 Score=69.08 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
+|+.++|+||||+|||||++++++.+.+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999998764
No 350
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.87 E-value=5.5e-06 Score=77.80 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=52.4
Q ss_pred cCCCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC-------Cchh-hcC---Cccccc-CEEEEEcCCcccccC-
Q 023354 170 KADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGD-------KIPR-KGG---PGITQA-DLLVINKTDLASAIG- 233 (283)
Q Consensus 170 ~~d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~-------~l~~-~~~---~~i~~a-d~ivi~K~g~i~~~g- 233 (283)
.....++++.|+.+.......- +|..|+++|++.+. .-+. +.. ...... -.+++||+|+....-
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 3455667788876544333222 36899999988751 1000 000 011222 368899999976310
Q ss_pred -ChHHHHhHHH----HhhcC---CCCeEEEEeccCCCHHH
Q 023354 234 -ADLAVMERDA----LRMRD---GGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 234 -~~~e~~~~~~----~~~~~---~~~i~~isa~~g~gi~~ 265 (283)
...+...+.+ ....+ ..+++++|+++|.|+.+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 1112222222 22221 36799999999999863
No 351
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.87 E-value=7.3e-06 Score=69.92 Aligned_cols=58 Identities=17% Similarity=0.001 Sum_probs=38.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHh-cccCCCcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCK-FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g-~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
.+|++++|+||||||||||+..++. ..+..+.+.++..+.......+....+|+.+|.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~ 79 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKP 79 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHH
Confidence 5699999999999999999666654 444456777776654321122233456776654
No 352
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.84 E-value=9.9e-06 Score=66.61 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=32.2
Q ss_pred ccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe
Q 023354 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (283)
Q Consensus 73 ~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~ 115 (283)
+......+|.+++|+|++||||||+.+.|+..+.+. +.+.+..
T Consensus 5 ~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 5 TTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp ---CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 333334568999999999999999999999988755 5665543
No 353
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.81 E-value=3.1e-06 Score=73.86 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=32.4
Q ss_pred ccccccC-CCCCCCCCCCCcccccccC-C---CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 54 HSHEPIY-SPGYFSRRAPPILSRNFNE-R---AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 54 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~---g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.....++ ++.| .....++++++|.. + |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~-~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPF-DEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEe-cCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445555 6666 23345788888874 4 8999999999999999999999865
No 354
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.79 E-value=5.8e-05 Score=77.15 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=61.1
Q ss_pred HHHHHcccccc-CCCcccC-CchHHHHHHHHHHhcC---CcEEEEe-CCCCCCchh------------hcCCc-------
Q 023354 160 GPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELAD---YIIYIID-VSGGDKIPR------------KGGPG------- 214 (283)
Q Consensus 160 ~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~~---~~l~llD-pt~g~~l~~------------~~~~~------- 214 (283)
+.|..+++.+. +++.+.+ ||||+||+.||++|+. +.|+|+| ||++++... ..+.+
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 45677777654 6777777 9999999999999984 4788888 999875321 11222
Q ss_pred ---ccccCEEEEE------cCCcccccCChHHHHh
Q 023354 215 ---ITQADLLVIN------KTDLASAIGADLAVME 240 (283)
Q Consensus 215 ---i~~ad~ivi~------K~g~i~~~g~~~e~~~ 240 (283)
+..||+|+++ +.|.+++.|++.+.+.
T Consensus 583 l~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 583 EDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp HHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred HHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 3679999999 7899999998877654
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.78 E-value=1.2e-05 Score=65.71 Aligned_cols=31 Identities=35% Similarity=0.407 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY 109 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g 109 (283)
.+|.+++|+|++||||||+.+.|++.+.+.|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 3688999999999999999999999876554
No 356
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.75 E-value=0.00019 Score=67.36 Aligned_cols=141 Identities=22% Similarity=0.262 Sum_probs=74.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCC--CChHHHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH--AAIREDI 155 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~--~~~~~~~ 155 (283)
+..+++++|++|+||||+...|+..+... .++.++..|+......+..+..+ ....+..++. ......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~-------~~~~l~v~~~~~~~dp~~- 170 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLA-------EQVGVDFFPSDVGQKPVD- 170 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHH-------HHHTCEECCCCSSSCHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhc-------ccCCeeEEeCCCCCCHHH-
Confidence 35689999999999999999999877643 48888888876533221111000 0000000110 011111
Q ss_pred HHHHHHHHHccccccCCCcccCCchH-----HHHHHHHH--Hhc--CCcEEEEeCCCCCCchhh---cCCcccccCEEEE
Q 023354 156 SINLGPLEELSNLFKADLLLCESGGD-----NLAANFSR--ELA--DYIIYIIDVSGGDKIPRK---GGPGITQADLLVI 223 (283)
Q Consensus 156 ~~~~~~l~~l~~~~~~d~~i~eSgGq-----~q~~~ia~--al~--~~~l~llDpt~g~~l~~~---~~~~i~~ad~ivi 223 (283)
.....+..+ ....+|.+++++.|. .....++. .+. +.+++|+|++++.+.... +...+. -..||+
T Consensus 171 -i~~~~l~~~-~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~-i~gvVl 247 (433)
T 2xxa_A 171 -IVNAALKEA-KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP-LTGVVL 247 (433)
T ss_dssp -HHHHHHHHH-HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSC-CCCEEE
T ss_pred -HHHHHHHHH-HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCC-CeEEEE
Confidence 112234333 124678888886552 12222221 122 477888998877543221 111111 146899
Q ss_pred EcCCcccc
Q 023354 224 NKTDLASA 231 (283)
Q Consensus 224 ~K~g~i~~ 231 (283)
||.|.-..
T Consensus 248 nK~D~~~~ 255 (433)
T 2xxa_A 248 TKVDGDAR 255 (433)
T ss_dssp ECTTSSSC
T ss_pred ecCCCCcc
Confidence 99987533
No 357
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.75 E-value=3.1e-05 Score=78.88 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=60.0
Q ss_pred HHHHHcccccc-CCCcccC-CchHHHHHHHHHHhcC---CcEEEEe-CCCCCCchh------------hcCCc-------
Q 023354 160 GPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELAD---YIIYIID-VSGGDKIPR------------KGGPG------- 214 (283)
Q Consensus 160 ~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~~---~~l~llD-pt~g~~l~~------------~~~~~------- 214 (283)
+.|..+++.+. +++.+.+ ||||+||+.||++|+. +.++|+| ||++++... ..+.+
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 45677777653 6777777 9999999999999984 4788888 999865321 11222
Q ss_pred ---ccccCEEEEE------cCCcccccCChHHHHh
Q 023354 215 ---ITQADLLVIN------KTDLASAIGADLAVME 240 (283)
Q Consensus 215 ---i~~ad~ivi~------K~g~i~~~g~~~e~~~ 240 (283)
+..||+|+++ +.|.+++.|++.+.+.
T Consensus 566 l~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 566 EDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp HHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred HHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 3679999999 7899988887766543
No 358
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.71 E-value=9.1e-06 Score=76.87 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=50.7
Q ss_pred CCcccCCchHHHHHHHHHH---hcCCcEEEEeCCCCCCc-------hh-hc---CCccccc-CEEEEEcCCcccccCChH
Q 023354 172 DLLLCESGGDNLAANFSRE---LADYIIYIIDVSGGDKI-------PR-KG---GPGITQA-DLLVINKTDLASAIGADL 236 (283)
Q Consensus 172 d~~i~eSgGq~q~~~ia~a---l~~~~l~llDpt~g~~l-------~~-~~---~~~i~~a-d~ivi~K~g~i~~~g~~~ 236 (283)
...++++.|+.+....... .+|..|+++|++.+... +. +. ....... -.+++||+|++.+.....
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 4455667776554433322 23688999998765200 10 00 0011222 367899999984311111
Q ss_pred HHHhHHH----HhhcC---CCCeEEEEeccCCCHHH
Q 023354 237 AVMERDA----LRMRD---GGPFIFAQVKHGLGVEE 265 (283)
Q Consensus 237 e~~~~~~----~~~~~---~~~i~~isa~~g~gi~~ 265 (283)
+.....+ ....+ ..+++++||++|.|+.+
T Consensus 166 ~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 2222222 22222 37899999999999863
No 359
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.69 E-value=4.6e-05 Score=72.20 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=47.6
Q ss_pred CCcccCCchHHHHHHHH-HH--hcCCcEEEEeCCCCC---------Cchhhc--CCccccc-CEEEEEcCCcccccCCh-
Q 023354 172 DLLLCESGGDNLAANFS-RE--LADYIIYIIDVSGGD---------KIPRKG--GPGITQA-DLLVINKTDLASAIGAD- 235 (283)
Q Consensus 172 d~~i~eSgGq~q~~~ia-~a--l~~~~l~llDpt~g~---------~l~~~~--~~~i~~a-d~ivi~K~g~i~~~g~~- 235 (283)
...++++.|+.+-.... +. .+|..|+|+|++.+. ...... ....... -.|++||.|+....-+.
T Consensus 122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~ 201 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEE 201 (467)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHH
T ss_pred EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHH
Confidence 34566777765433222 22 246899999988762 111000 0011223 36889999986421111
Q ss_pred -HHH----HhHHHHhh-cC----CCCeEEEEeccCCCHHHH
Q 023354 236 -LAV----MERDALRM-RD----GGPFIFAQVKHGLGVEEI 266 (283)
Q Consensus 236 -~e~----~~~~~~~~-~~----~~~i~~isa~~g~gi~~l 266 (283)
.+. +...+... .+ ..+++++|+++|.|+.++
T Consensus 202 ~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 202 RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 111 22222222 11 467899999999998764
No 360
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.68 E-value=6.2e-05 Score=76.07 Aligned_cols=80 Identities=24% Similarity=0.239 Sum_probs=58.1
Q ss_pred HHHHcccccc-CCCcccC-CchHHHHHHHHHHhcC-C--cEEEEe-CCCCCCchh------------hcCCc--------
Q 023354 161 PLEELSNLFK-ADLLLCE-SGGDNLAANFSRELAD-Y--IIYIID-VSGGDKIPR------------KGGPG-------- 214 (283)
Q Consensus 161 ~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~~-~--~l~llD-pt~g~~l~~------------~~~~~-------- 214 (283)
.|..+++.+. +++.+.+ ||||+||+.||++|+. + .|+|+| ||++++... ..+.+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5666666543 6777777 9999999999999985 4 477777 999874321 11222
Q ss_pred --ccccCEEEEE------cCCcccccCChHHHHh
Q 023354 215 --ITQADLLVIN------KTDLASAIGADLAVME 240 (283)
Q Consensus 215 --i~~ad~ivi~------K~g~i~~~g~~~e~~~ 240 (283)
+..||+|+++ +.|.+++.|++.+.+.
T Consensus 442 ~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 3679999999 7899988887766543
No 361
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.67 E-value=2.2e-05 Score=65.62 Aligned_cols=36 Identities=33% Similarity=0.583 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeec
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND 117 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d 117 (283)
.++.+++|+|++|||||||.+.|++.+. .+.++..|
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~---~~~~i~~D 54 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP---NCSVISQD 54 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST---TEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC---CcEEEeCC
Confidence 3578999999999999999999999753 34444443
No 362
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.66 E-value=2.2e-05 Score=66.37 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+.+++|+|++||||||+.+.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999865
No 363
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=2.1e-05 Score=71.05 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHh-cccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354 81 AFTVGIGGPVGTGKTALMLALCK-FLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g-~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
...+.|.||||+|||||+++|++ ++.++ |.+.+.+.++.... ..+..++++++..
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPY 92 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccc
Confidence 34499999999999999999999 66776 88887776543221 1245677776653
No 364
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.65 E-value=2e-05 Score=73.23 Aligned_cols=57 Identities=21% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHH--hcccC-----CCcE-EEEeecCCC-CCHHHHHHhccccCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALC--KFLRD-----KYSL-AAVTNDIFT-KEDGEFLMRNGALPE 135 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~--g~~~~-----~g~i-~i~~~d~~~-~~~~~~~~~ig~v~q 135 (283)
.+|+++.|+||+|||||||++.|+ ++.++ .+.+ .+.+.+... ....++++++|+.++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 469999999999999999999654 55544 2334 444433211 112345567887665
No 365
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.64 E-value=2.2e-05 Score=75.79 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=33.5
Q ss_pred cccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEE
Q 023354 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (283)
Q Consensus 72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i 113 (283)
+...++..+|+.++|+||||+|||||+++|++.+.+. +.+.+
T Consensus 99 l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 99 VQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp HHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence 3444555679999999999999999999999988654 55544
No 366
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.62 E-value=4.1e-05 Score=63.00 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~ 119 (283)
-++++|+|++|||||||++.|++.+.+. .++..+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4689999999999999999999987655 46666666543
No 367
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.60 E-value=6.5e-05 Score=64.34 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
.+|.+|+|.|++||||||+++.|+..+.+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 36899999999999999999999998876
No 368
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.59 E-value=3.3e-05 Score=72.26 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
.+++++|+|||||||||||++|++++.+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4789999999999999999999998765
No 369
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.56 E-value=4.6e-05 Score=69.73 Aligned_cols=56 Identities=21% Similarity=0.105 Sum_probs=41.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (283)
.+|.++.|.||||||||||+..++....+. +.+.++..+... +..+.+++|+.+++
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DPVYAKNLGVDLKS 115 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHHHHHHHTCCGGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--chHHHHHcCCchhh
Confidence 468999999999999999999999987655 677666554322 23356677876553
No 370
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.56 E-value=3.7e-05 Score=64.14 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
.+++|+|++||||||+.+.|+++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 37999999999999999999983
No 371
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.55 E-value=3.7e-05 Score=64.25 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
.+|.+++|+||+|||||||.+.|+..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4688999999999999999999998764
No 372
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.51 E-value=4.5e-05 Score=63.40 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 023354 83 TVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g 103 (283)
+|+|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 373
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.50 E-value=6.5e-05 Score=60.02 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
..+.+|+||||||||||+.+|.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999753
No 374
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.49 E-value=3.7e-05 Score=70.92 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=39.4
Q ss_pred CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (283)
Q Consensus 71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (283)
++.+.++.. +|++++|+||||||||||+++|++.+ .|.+... .... + .....+|++||..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~--~~~~--~-~~~~~lg~~~q~~ 218 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKALNV--NLPL--D-RLNFELGVAIDQF 218 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEECC--SSCT--T-THHHHHGGGTTCS
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEEE--eccc--h-hHHHHHHHhcchh
Confidence 445556654 48999999999999999999999964 3554331 1111 1 1122467777754
No 375
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.49 E-value=0.00016 Score=71.96 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHhcCCcEEEEeCCCCCCchhhcC----CcccccCEEEEEcCCcccc
Q 023354 188 SRELADYIIYIIDVSGGDKIPRKGG----PGITQADLLVINKTDLASA 231 (283)
Q Consensus 188 a~al~~~~l~llDpt~g~~l~~~~~----~~i~~ad~ivi~K~g~i~~ 231 (283)
|..++|..|+|+|+..|-..+.+.. ......-.++|||.|+..+
T Consensus 105 aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 105 SLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred HHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 4456799999999998865433210 0113455889999998644
No 376
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.48 E-value=5.7e-05 Score=69.20 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=43.8
Q ss_pred CchHHHHHHHHHHhc----------CCcEEEEe-CCCCCCchhh---------cCCcc-------cccCEEEEEcCCccc
Q 023354 178 SGGDNLAANFSRELA----------DYIIYIID-VSGGDKIPRK---------GGPGI-------TQADLLVINKTDLAS 230 (283)
Q Consensus 178 SgGq~q~~~ia~al~----------~~~l~llD-pt~g~~l~~~---------~~~~i-------~~ad~ivi~K~g~i~ 230 (283)
|+||+|++.+|++|+ +|.|+|+| |+++.|.... ...++ ..|+++++++.|.+.
T Consensus 267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~~~~~i~~l~~G~i~ 346 (359)
T 2o5v_A 267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAPGAALTLRAQAGRFT 346 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCTTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccccCCEEEEEECCEEE
Confidence 999999999999998 46666666 9998764321 11110 168899999999998
Q ss_pred ccCChHH
Q 023354 231 AIGADLA 237 (283)
Q Consensus 231 ~~g~~~e 237 (283)
..|++.+
T Consensus 347 ~~g~~~~ 353 (359)
T 2o5v_A 347 PVADEEM 353 (359)
T ss_dssp ECCCTTT
T ss_pred ecCCHHH
Confidence 8776644
No 377
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.46 E-value=7.4e-05 Score=62.10 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~ 118 (283)
..+|+|+|++||||||+.+.|++.+ |...+...++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCCcC
Confidence 5689999999999999999999865 3444444443
No 378
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.44 E-value=9.3e-05 Score=60.61 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~ 119 (283)
-.+++|+|++|||||||++.|+..++.. .++.++..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4689999999999999999999988765 47887776654
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.41 E-value=5.3e-05 Score=63.63 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y 109 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g 109 (283)
.+|.+++|+|++||||||+.+.|.+.+.+. |
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 468999999999999999999999988744 5
No 380
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.39 E-value=0.00053 Score=64.55 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=34.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccC-CC-cEEEEeecCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIF 119 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~g-~i~i~~~d~~ 119 (283)
.+|+++.|.|+||+|||||+..++....+ .| .+.++..+..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 46999999999999999999999997765 45 7888876653
No 381
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.39 E-value=9.2e-05 Score=68.37 Aligned_cols=55 Identities=16% Similarity=0.001 Sum_probs=43.5
Q ss_pred CCccccccCCCCCCCCCCCCcc-------------ccccc-CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 52 APHSHEPIYSPGYFSRRAPPIL-------------SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
.+.+.|.++.|.|+.++...-. +..+. .+|++++|+||+|+|||||++.|++.+.
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4678888999999987643321 44554 4699999999999999999999999764
No 382
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.37 E-value=5.5e-05 Score=68.36 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+.++|.||||+|||||+++|++.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 689999999999999999999987
No 383
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.36 E-value=8.3e-05 Score=60.69 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999998643
No 384
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.34 E-value=0.00017 Score=68.86 Aligned_cols=61 Identities=26% Similarity=0.129 Sum_probs=39.9
Q ss_pred cccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 72 ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 72 ~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
+.+..+..+ | +.|+||||+|||||+++|++... .+.+.+.+.++..........++..++|
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq 117 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFE 117 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence 344444433 5 89999999999999999999764 4667777776654322222333444444
No 385
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.31 E-value=0.00011 Score=58.81 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.+|+|+|++||||||+.+.|+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
No 386
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.26 E-value=0.00012 Score=67.75 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
..+..++|+|+||+|||||+|+|++.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45788999999999999999999997
No 387
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.23 E-value=0.0002 Score=58.80 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
++..++|+|++||||||+.+.|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999885
No 388
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.21 E-value=0.00036 Score=57.76 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcE
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSL 111 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i 111 (283)
++.+|+|.|++||||||+.+.|+..+...|.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 34 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV 34 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence 46789999999999999999999876644534
No 389
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.19 E-value=0.00021 Score=57.75 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
+.+|.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998653
No 390
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.19 E-value=0.0002 Score=61.21 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=24.2
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 78 NERAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
..++.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999999999843
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.17 E-value=0.00033 Score=57.47 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~ 118 (283)
+|+|.|+.||||||+.+.|...+...|-..+...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 37 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCC
Confidence 689999999999999999998775444333333333
No 392
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.17 E-value=0.0002 Score=60.02 Aligned_cols=25 Identities=32% Similarity=0.207 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
..+.+|+|||||||||++.+|.-.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997543
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.15 E-value=0.00028 Score=58.30 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+|.+|+|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 394
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.13 E-value=0.00026 Score=57.69 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
+.+|+|.|++||||||+.+.|+..+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 568999999999999999999886543
No 395
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.12 E-value=0.00024 Score=56.69 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 023354 82 FTVGIGGPVGTGKTALMLAL 101 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L 101 (283)
.+|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 396
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.10 E-value=0.00025 Score=58.39 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
+|+|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998653
No 397
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.09 E-value=0.00025 Score=57.95 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++.+|.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 398
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00031 Score=57.92 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
.+..+|+|+|++||||||+.+.|+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999985
No 399
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.07 E-value=0.00012 Score=60.96 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDK 108 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~ 108 (283)
+|+|.|++||||||+++.|+..+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999987654
No 400
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00038 Score=56.71 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+...++|+|++|||||||++.|++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999853
No 401
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.05 E-value=0.0005 Score=62.64 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=39.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEEEEeecCCCCCHHHHHHhccccCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVTNDIFTKEDGEFLMRNGALPE 135 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (283)
.+|.++.|.||||||||||+..++.... +.+.+.++..+.. .. ..+.+++|+.++
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-~~-~~~a~~lG~~~~ 114 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-LD-PEYAKKLGVDTD 114 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CC-HHHHHHTTCCGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-cC-HHHHHHcCCCHH
Confidence 3689999999999999999888887554 4467777776542 22 234556665443
No 402
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.04 E-value=0.00033 Score=57.36 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.++.+|+|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998754
No 403
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.03 E-value=0.00027 Score=57.26 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998865
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.02 E-value=0.00039 Score=58.37 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHh
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g 103 (283)
++.+|+|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 405
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.02 E-value=0.00048 Score=67.24 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=36.2
Q ss_pred ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEEeecCC
Q 023354 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIF 119 (283)
Q Consensus 72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~~~d~~ 119 (283)
+..+.+. ..|+.+.|+||||+|||||+++|++++.+. +.+.+.+....
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 3444444 458899999999999999999999998765 45665555443
No 406
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.02 E-value=0.00067 Score=57.42 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeecCCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFT 120 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d~~~ 120 (283)
.+|.+|+|.|+.||||||+++.|...+...| .+ +...++..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~~ 45 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPGG 45 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSCS
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCC
Confidence 3588999999999999999999999887664 44 34444543
No 407
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.01 E-value=0.00036 Score=56.23 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 023354 82 FTVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g 103 (283)
.+|.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 408
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.00 E-value=0.00036 Score=57.98 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
.+|.+|+|.|++||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999988654
No 409
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.99 E-value=0.0003 Score=60.88 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~ 118 (283)
.++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHH
Confidence 3478999999999999999999998764 13344444433
No 410
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.97 E-value=0.00043 Score=58.27 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.++.+|+|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998854
No 411
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.96 E-value=0.0004 Score=57.68 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
.|+|+||+|||||||++.|+...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987654
No 412
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.96 E-value=0.00041 Score=57.66 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
++.+|+|.|++||||||+.+.|+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998664
No 413
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.96 E-value=0.00042 Score=56.42 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+..|.|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 414
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.95 E-value=0.00065 Score=55.40 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCC
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDKY 109 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g 109 (283)
+|+|.|++||||||+.+.|+..+...|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG 28 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 689999999999999999998764333
No 415
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.95 E-value=0.00041 Score=60.16 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.+++|+||+|||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998864
No 416
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.95 E-value=0.00041 Score=56.38 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++..|.|+|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 417
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.93 E-value=0.0005 Score=63.26 Aligned_cols=36 Identities=14% Similarity=-0.045 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~ 115 (283)
.+..++|+|++|||||||++.|+..+.+. +.+.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45678999999999999999999977665 6776654
No 418
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.93 E-value=0.00048 Score=56.16 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+.+|+|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 419
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.92 E-value=0.00073 Score=57.22 Aligned_cols=45 Identities=20% Similarity=0.068 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCCc-EEEEeecCCCCCHH
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYS-LAAVTNDIFTKEDG 124 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~-i~i~~~d~~~~~~~ 124 (283)
+|.+|.|-|+.||||||+++.|...+...|. ..+...++......
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g 47 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLA 47 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHH
Confidence 4789999999999999999999998875542 22445555544333
No 420
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.92 E-value=0.00041 Score=56.46 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDK 108 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~ 108 (283)
+|.|.|++||||||+.+.|+..+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999876533
No 421
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.91 E-value=0.00032 Score=71.08 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
-..|+|+|..|+|||||++.|++.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999874
No 422
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.85 E-value=0.00059 Score=62.52 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
+..++|+|++|+|||||+|+|++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999983
No 423
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.85 E-value=0.00068 Score=56.10 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++.+|+|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998754
No 424
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.84 E-value=0.00056 Score=56.13 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+.+|+|+|++||||||+.+.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998854
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.82 E-value=0.00046 Score=55.94 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=18.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++.+|.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998754
No 426
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.82 E-value=0.00062 Score=58.57 Aligned_cols=26 Identities=35% Similarity=0.675 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+..+++|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 427
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.80 E-value=0.00065 Score=57.48 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++.+|+|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 428
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.79 E-value=0.00083 Score=55.91 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+...++|+|++|+|||||++.|++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999999854
No 429
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.78 E-value=0.00064 Score=56.81 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+|+|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997754
No 430
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.77 E-value=0.00064 Score=60.13 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++..+.|+||+||||||+.+.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
No 431
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.76 E-value=0.00072 Score=56.55 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+|+|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997754
No 432
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.00056 Score=62.96 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCC-cEEEEEcCCCCcHHHHHHHHHhc
Q 023354 79 ERA-FTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 79 ~~g-~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
+.| ..|+|+|++++|||||+|+|++.
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 344 47999999999999999999985
No 433
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.75 E-value=0.00068 Score=57.08 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++.+|.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998755
No 434
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.75 E-value=0.00088 Score=55.39 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+..+|+|+|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.73 E-value=0.00073 Score=55.81 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
No 436
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.73 E-value=0.0012 Score=56.78 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeecCCC
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFT 120 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d~~~ 120 (283)
+|.+|+|.|++||||||+++.|...+...| .+.+...++..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG 67 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence 588999999999999999999999876554 42334444543
No 437
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.73 E-value=0.00065 Score=55.27 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.+|+|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998754
No 438
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.71 E-value=0.00079 Score=57.62 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
.+|.+|+|.|+.||||||+++.|+..+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999987753
No 439
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.69 E-value=0.0009 Score=56.87 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+..+|.|+||+||||+|..+.|+..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998865
No 440
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.66 E-value=0.00058 Score=68.92 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFT 120 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~ 120 (283)
..+..+.|+||+|+|||||+++|++.+... -+.+.+.++..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~-~i~v~~~~l~~ 276 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAF-FFLINGPEIMS 276 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCE-EEEEEHHHHSS
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCc-EEEEEchHhhh
Confidence 347889999999999999999999986432 34555555443
No 441
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.66 E-value=0.00075 Score=61.94 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023354 83 TVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
.++|+|++|||||||+++|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 442
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.65 E-value=0.00085 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
..+|+|+|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 443
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.65 E-value=0.0011 Score=52.97 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=27.7
Q ss_pred CCcccC-CchHHHHHHHH------HHhcC-CcEEEEe-CCCCCCc
Q 023354 172 DLLLCE-SGGDNLAANFS------RELAD-YIIYIID-VSGGDKI 207 (283)
Q Consensus 172 d~~i~e-SgGq~q~~~ia------~al~~-~~l~llD-pt~g~~l 207 (283)
+..+.+ ||||+||+++| ++++. |.++++| |+++.|.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~ 96 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE 96 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCH
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCH
Confidence 344444 99999999876 67764 8888888 9999764
No 444
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.65 E-value=0.00092 Score=58.02 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
++.+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998654
No 445
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.65 E-value=0.00085 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.+|+|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
No 446
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.64 E-value=0.001 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+|+|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998854
No 447
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.64 E-value=0.001 Score=57.12 Aligned_cols=27 Identities=26% Similarity=0.107 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.++.+|+|+|++||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998754
No 448
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.63 E-value=0.0011 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
-.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 449
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.63 E-value=0.0009 Score=56.28 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++.+|+|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998855
No 450
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.62 E-value=0.0042 Score=56.28 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~ 118 (283)
.+|+.+.|.|++|+|||||+..++...... +.+.++..+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 469999999999999999999988765434 6777777654
No 451
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=0.00071 Score=60.89 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=28.6
Q ss_pred CCcE--EEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354 80 RAFT--VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (283)
Q Consensus 80 ~g~~--v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d 117 (283)
.|.+ +.|.||+|+||||+++++++.+.+. +.+.+...+
T Consensus 43 ~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 43 EGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 3544 8999999999999999999987654 444444443
No 452
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.58 E-value=0.0011 Score=60.50 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=23.3
Q ss_pred CCcE--EEEEcCCCCcHHHHHHHHHhccc
Q 023354 80 RAFT--VGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 80 ~g~~--v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
+|++ ++|+|++||||||+.++|++.+.
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4555 99999999999999999998653
No 453
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.58 E-value=0.00055 Score=65.48 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=26.5
Q ss_pred CchHHHHHHHHHHhc-CC--cEEEEe-CCCCCCc
Q 023354 178 SGGDNLAANFSRELA-DY--IIYIID-VSGGDKI 207 (283)
Q Consensus 178 SgGq~q~~~ia~al~-~~--~l~llD-pt~g~~l 207 (283)
||||+||++||++++ +| .++|+| |++|.+.
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~ 432 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGG 432 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCT
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCH
Confidence 999999999999987 57 888888 9999763
No 454
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.56 E-value=0.001 Score=57.17 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
-+.|.||+|+|||||+++|++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999764
No 455
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.54 E-value=0.0014 Score=55.68 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=23.9
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 77 FNERAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 77 ~~~~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+..++..|.|+|++||||||+.+.|+..+
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33456789999999999999999998765
No 456
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.53 E-value=0.0022 Score=52.92 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLRDK 108 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~ 108 (283)
..+.|.||+|+|||||+++++..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 679999999999999999999876544
No 457
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.52 E-value=0.0012 Score=60.42 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 023354 82 FTVGIGGPVGTGKTALMLALC 102 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~ 102 (283)
.+.+|+|+|||||||+|.+|+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999986
No 458
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.51 E-value=0.0043 Score=56.01 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDK 108 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~ 108 (283)
.+.|.||+|+|||||++.+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999987654
No 459
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.51 E-value=0.0013 Score=55.65 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+|+|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 460
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.49 E-value=0.0013 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++.|+||+||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998865
No 461
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.49 E-value=0.0014 Score=56.42 Aligned_cols=25 Identities=24% Similarity=0.643 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
..+|+|.|++||||||+.+.|...+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 462
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.48 E-value=0.0016 Score=57.51 Aligned_cols=26 Identities=35% Similarity=0.282 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++..++|+|.+|+|||||+|.|+|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 35689999999999999999999864
No 463
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.47 E-value=0.0011 Score=60.64 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=24.7
Q ss_pred ccccccCC-CcEEEEEcCCCCcHHHHHHHHHh
Q 023354 73 LSRNFNER-AFTVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 73 ~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g 103 (283)
...++.-. | +++|+||||||||||+++|.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 34445433 5 999999999999999999997
No 464
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.46 E-value=0.0013 Score=55.04 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023354 83 TVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.|+|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 465
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.46 E-value=0.0021 Score=53.90 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~ 108 (283)
++..+.|.||+|+|||||++.++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57889999999999999999999876543
No 466
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.41 E-value=0.0026 Score=60.84 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHh--cccCC-CcEEEEeecCCC
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCK--FLRDK-YSLAAVTNDIFT 120 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g--~~~~~-g~i~i~~~d~~~ 120 (283)
+++.+.|.|.+||||||+|+.|+. +++.+ +.+.+...|+..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 478999999999999999999886 44555 788888887764
No 467
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.41 E-value=0.0018 Score=53.91 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
...+|+|+|+.||||||+.+.|...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998753
No 468
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.39 E-value=0.0016 Score=56.80 Aligned_cols=25 Identities=28% Similarity=0.147 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
..++|+|.+|+|||||+|.|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999998654
No 469
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.38 E-value=0.0028 Score=55.67 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~ 115 (283)
...+.|.||+|+|||||.++|++.+... +.+...+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 3579999999999999999999988665 5444443
No 470
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.37 E-value=0.0017 Score=56.24 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
...|+|+|..|+|||||++.|++.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999985
No 471
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.36 E-value=0.0017 Score=56.47 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
...|+|+|..|+|||||++.|++..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999853
No 472
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.36 E-value=0.00097 Score=59.09 Aligned_cols=38 Identities=13% Similarity=0.353 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d 117 (283)
+..+|+|.|+.||||||+.+.|...+... ..+.++..|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 46789999999999999999998855322 235555444
No 473
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.33 E-value=0.0017 Score=55.47 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccC-CC-cEEEEeecCCCC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIFTK 121 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~g-~i~i~~~d~~~~ 121 (283)
.+|.+|+|.|+.||||||+++.|...+.. .| .+.+...++...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t 63 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGT 63 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCC
Confidence 36889999999999999999999998765 44 454434555543
No 474
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.33 E-value=0.0044 Score=51.99 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHH
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDG 124 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~ 124 (283)
|.+|+|=|+-||||||+++.|...+.....+. ...+++.....
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~-~~~eP~~t~~g 44 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI-MTREPGGVPTG 44 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE-EEESSTTCHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEE-EeeCCCCChHH
Confidence 45789999999999999999999775433443 34455544333
No 475
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.28 E-value=0.0053 Score=51.99 Aligned_cols=29 Identities=34% Similarity=0.225 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
.+|.+|.|.|+.||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999998765
No 476
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.28 E-value=0.0019 Score=59.86 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023354 83 TVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
.++|+|++|+|||||+|+|++.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 477
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.28 E-value=0.0025 Score=56.07 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHh
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g 103 (283)
+..+|+|.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
No 478
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.27 E-value=0.0037 Score=51.41 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEEEEe
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVT 115 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~i~~ 115 (283)
+|.++.+.||+||||||++..++..+. ...++.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 477899999999999999855554333 334555544
No 479
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.24 E-value=0.0027 Score=56.18 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
.+..+.|.||+|+|||||+++|++.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 467899999999999999999999753
No 480
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.18 E-value=0.0032 Score=50.39 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
....+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999988653
No 481
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.15 E-value=0.0027 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998854
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.12 E-value=0.003 Score=53.81 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
++.+|+|.|+.||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998764
No 483
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.12 E-value=0.003 Score=55.53 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
.+|.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 484
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.10 E-value=0.0037 Score=54.70 Aligned_cols=26 Identities=35% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.+..+.|.||+|+|||||++++++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46689999999999999999999865
No 485
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.09 E-value=0.0026 Score=57.19 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
..+..+.|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34778999999999999999999997653
No 486
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.07 E-value=0.0051 Score=51.19 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHH
Q 023354 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGE 125 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~ 125 (283)
+|+|=|.-||||||.++.|...+...|.-.+...+++.....+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~ 44 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGE 44 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHH
Confidence 5788899999999999999998876654344555555444333
No 487
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.02 E-value=0.0023 Score=55.33 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
.++.+|+|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999988763
No 488
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.00 E-value=0.0042 Score=56.20 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
++.+++|+||.|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46789999999999999999999865
No 489
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.98 E-value=0.0044 Score=57.58 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.+..+|.|+|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 347899999999999999999998743
No 490
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.96 E-value=0.0043 Score=55.21 Aligned_cols=27 Identities=37% Similarity=0.335 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFLRD 107 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~~~ 107 (283)
+..+.|.||+|+|||||++.++..+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467899999999999999999997654
No 491
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.95 E-value=0.0029 Score=61.49 Aligned_cols=27 Identities=33% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
.+..+|+|+|++|+|||||+|.|+|..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 345689999999999999999999953
No 492
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.95 E-value=0.0071 Score=54.67 Aligned_cols=40 Identities=23% Similarity=0.167 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcc-cC------CCcEEEEeecC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFL-RD------KYSLAAVTNDI 118 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~-~~------~g~i~i~~~d~ 118 (283)
.+|.++.|.||+|||||||+..++... .+ .+.+.++..+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 468999999999999999999998852 22 35666665543
No 493
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.94 E-value=0.0039 Score=52.31 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=27.9
Q ss_pred CcccccccCCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 71 ~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
.+...-+...|..+.|+||+|||||||...|+..
T Consensus 24 ~lHa~~v~~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDIYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3455555667889999999999999999999774
No 494
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.91 E-value=0.0042 Score=56.32 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 82 ~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
.+|+|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999988653
No 495
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.90 E-value=0.0042 Score=49.68 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~ 106 (283)
....+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999988654
No 496
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.90 E-value=0.0035 Score=60.48 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
-.+|+|+|+.|||||||+|.|+|.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999995
No 497
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.89 E-value=0.0063 Score=54.49 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHhcc-cC------CCcEEEEeecC
Q 023354 79 ERAFTVGIGGPVGTGKTALMLALCKFL-RD------KYSLAAVTNDI 118 (283)
Q Consensus 79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~-~~------~g~i~i~~~d~ 118 (283)
.+|.++.|.|++|+|||||+..++... .+ .+.+.++..+-
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 468999999999999999999998753 33 45666665543
No 498
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.88 E-value=0.0049 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHh
Q 023354 80 RAFTVGIGGPVGTGKTALMLALCK 103 (283)
Q Consensus 80 ~g~~v~ilG~nGsGKSTLl~~L~g 103 (283)
+|+.++|.||+||||||++..++-
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHh
Confidence 588999999999999998887754
No 499
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.87 E-value=0.0049 Score=58.83 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023354 83 TVGIGGPVGTGKTALMLALCKF 104 (283)
Q Consensus 83 ~v~ilG~nGsGKSTLl~~L~g~ 104 (283)
+.+|+|+|||||||||.+|..+
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999665
No 500
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.85 E-value=0.0054 Score=55.01 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (283)
Q Consensus 81 g~~v~ilG~nGsGKSTLl~~L~g~~ 105 (283)
..+++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998754
Done!