Query 023355
Match_columns 283
No_of_seqs 122 out of 1398
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1230 CzcD Co/Zn/Cd efflux s 100.0 6.3E-57 1.4E-61 387.4 32.6 272 1-283 21-294 (296)
2 PRK03557 zinc transporter ZitB 100.0 5.3E-54 1.1E-58 380.8 35.9 272 1-283 18-292 (312)
3 COG0053 MMT1 Predicted Co/Zn/C 100.0 7E-53 1.5E-57 370.5 32.9 273 1-283 12-290 (304)
4 PRK09509 fieF ferrous iron eff 100.0 7.6E-52 1.7E-56 365.7 33.2 272 2-283 11-287 (299)
5 TIGR01297 CDF cation diffusion 100.0 2.6E-49 5.6E-54 345.2 29.0 261 14-283 2-268 (268)
6 KOG1484 Putative Zn2+ transpor 100.0 4.5E-47 9.7E-52 324.0 27.3 282 1-283 34-347 (354)
7 PF01545 Cation_efflux: Cation 100.0 3.3E-47 7.2E-52 334.6 10.6 273 4-283 1-281 (284)
8 KOG1482 Zn2+ transporter [Inor 100.0 9.9E-43 2.1E-47 301.6 20.9 280 1-283 72-366 (379)
9 KOG1483 Zn2+ transporter ZNT1 100.0 3.1E-43 6.8E-48 305.7 12.9 278 2-282 9-369 (404)
10 KOG1485 Mitochondrial Fe2+ tra 100.0 8E-38 1.7E-42 275.9 25.8 269 2-283 115-400 (412)
11 COG3965 Predicted Co/Zn/Cd cat 100.0 1.5E-30 3.4E-35 214.5 20.9 270 2-280 20-306 (314)
12 KOG2802 Membrane protein HUEL 99.8 3.6E-20 7.8E-25 160.2 14.2 213 2-254 207-434 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.3 1.1E-05 2.3E-10 71.6 12.7 89 4-100 123-211 (304)
14 PRK09509 fieF ferrous iron eff 98.1 7.6E-05 1.7E-09 66.2 12.6 88 6-101 123-210 (299)
15 TIGR01297 CDF cation diffusion 98.0 4.7E-05 1E-09 66.3 10.8 89 5-101 101-189 (268)
16 PRK03557 zinc transporter ZitB 97.2 0.0042 9.2E-08 55.4 10.8 72 24-102 147-218 (312)
17 KOG1485 Mitochondrial Fe2+ tra 95.5 0.063 1.4E-06 48.9 7.7 85 7-99 236-320 (412)
18 COG1230 CzcD Co/Zn/Cd efflux s 95.5 0.18 3.8E-06 44.4 10.2 72 137-208 44-123 (296)
19 PF01545 Cation_efflux: Cation 91.6 0.2 4.4E-06 43.7 3.8 89 6-101 111-202 (284)
20 COG4858 Uncharacterized membra 90.2 9 0.0002 31.3 11.9 108 81-191 102-210 (226)
21 PLN02601 beta-carotene hydroxy 83.9 21 0.00046 30.9 10.7 138 48-198 81-231 (303)
22 cd04870 ACT_PSP_1 CT domains f 83.7 5.9 0.00013 26.9 6.4 60 212-274 11-70 (75)
23 KOG1483 Zn2+ transporter ZNT1 81.5 20 0.00043 32.8 10.2 70 137-206 31-108 (404)
24 KOG1482 Zn2+ transporter [Inor 80.5 14 0.00031 33.4 9.0 68 137-204 95-170 (379)
25 cd04869 ACT_GcvR_2 ACT domains 80.2 9.7 0.00021 26.0 6.5 66 211-279 10-80 (81)
26 PRK11118 putative monooxygenas 77.2 9.3 0.0002 27.7 5.5 64 212-280 21-85 (100)
27 COG1279 Lysine efflux permease 76.9 27 0.00059 28.9 8.9 78 139-216 33-110 (202)
28 PF13740 ACT_6: ACT domain; PD 75.5 12 0.00027 25.5 5.8 59 212-274 14-72 (76)
29 PF14535 AMP-binding_C_2: AMP- 74.8 16 0.00035 26.2 6.6 66 211-281 6-77 (96)
30 PF01037 AsnC_trans_reg: AsnC 73.7 19 0.00042 23.9 6.4 60 212-280 10-70 (74)
31 KOG1484 Putative Zn2+ transpor 71.8 76 0.0017 28.6 12.9 68 137-204 57-132 (354)
32 PF07444 Ycf66_N: Ycf66 protei 71.0 34 0.00074 24.2 9.2 44 151-195 35-82 (84)
33 PRK11589 gcvR glycine cleavage 63.3 34 0.00073 28.2 6.8 66 212-280 107-177 (190)
34 PF08803 ydhR: Putative mono-o 62.8 32 0.00069 25.0 5.7 64 212-280 18-82 (97)
35 PF03780 Asp23: Asp23 family; 60.2 63 0.0014 23.4 7.7 51 231-281 48-105 (108)
36 COG4035 Predicted membrane pro 56.0 18 0.00038 25.9 3.3 46 34-85 60-105 (108)
37 PF09580 Spore_YhcN_YlaJ: Spor 55.3 60 0.0013 26.0 7.0 69 209-282 72-142 (177)
38 PF10934 DUF2634: Protein of u 54.4 28 0.0006 26.0 4.5 52 198-250 53-106 (112)
39 PRK10334 mechanosensitive chan 52.8 79 0.0017 27.8 7.8 75 208-282 195-279 (286)
40 PF09877 DUF2104: Predicted me 50.3 80 0.0017 22.9 6.0 20 65-84 78-97 (99)
41 PRK00194 hypothetical protein; 49.4 46 0.001 23.2 4.9 66 211-280 14-80 (90)
42 PRK12585 putative monovalent c 48.7 1E+02 0.0022 25.4 7.1 16 151-166 42-57 (197)
43 COG2177 FtsX Cell division pro 47.2 1.6E+02 0.0034 26.1 8.8 22 210-231 70-91 (297)
44 COG0581 PstA ABC-type phosphat 47.1 2.1E+02 0.0044 25.4 10.5 84 107-200 80-169 (292)
45 PF03927 NapD: NapD protein; 46.9 95 0.0021 21.5 6.1 57 212-278 15-71 (79)
46 cd04872 ACT_1ZPV ACT domain pr 45.7 58 0.0013 22.7 4.9 65 211-279 12-77 (88)
47 PRK15385 magnesium transport p 44.2 2E+02 0.0043 24.4 12.2 65 215-282 159-224 (225)
48 PF05817 Ribophorin_II: Oligos 43.5 1.5E+02 0.0032 29.4 8.7 42 156-197 589-632 (636)
49 PF01883 DUF59: Domain of unkn 41.3 1.1E+02 0.0023 20.4 5.6 41 236-278 29-72 (72)
50 TIGR00268 conserved hypothetic 40.9 35 0.00075 29.3 3.6 49 229-282 198-248 (252)
51 cd04887 ACT_MalLac-Enz ACT_Mal 40.9 74 0.0016 21.0 4.7 54 212-267 11-64 (74)
52 PF13291 ACT_4: ACT domain; PD 40.7 1.1E+02 0.0024 20.6 6.8 60 212-276 18-78 (80)
53 cd06406 PB1_P67 A PB1 domain i 40.2 97 0.0021 21.7 5.0 36 246-282 12-47 (80)
54 TIGR03406 FeS_long_SufT probab 39.9 2E+02 0.0042 23.4 7.6 37 246-282 116-155 (174)
55 TIGR02159 PA_CoA_Oxy4 phenylac 38.7 1.1E+02 0.0023 24.1 5.8 26 256-281 40-65 (146)
56 TIGR02945 SUF_assoc FeS assemb 38.7 1.4E+02 0.0031 21.2 6.9 36 246-281 40-78 (99)
57 TIGR00439 ftsX putative protei 38.0 2.9E+02 0.0063 24.5 11.0 25 207-231 74-98 (309)
58 PRK10614 multidrug efflux syst 37.2 98 0.0021 32.5 6.8 62 203-270 53-118 (1025)
59 PRK11465 putative mechanosensi 36.3 1.5E+02 0.0033 29.9 7.5 49 233-281 670-723 (741)
60 PF11654 DUF2665: Protein of u 35.5 42 0.00091 20.8 2.3 18 172-189 5-22 (47)
61 PRK11179 DNA-binding transcrip 34.3 1.8E+02 0.0039 22.7 6.5 59 212-279 81-140 (153)
62 COG3978 Acetolactate synthase 33.6 1.7E+02 0.0036 20.5 5.8 56 209-267 12-67 (86)
63 PRK11169 leucine-responsive tr 33.4 2.2E+02 0.0049 22.4 7.0 60 211-279 87-147 (164)
64 TIGR02898 spore_YhcN_YlaJ spor 33.4 2E+02 0.0043 22.9 6.5 66 212-283 54-124 (158)
65 PRK13011 formyltetrahydrofolat 33.1 1.8E+02 0.0039 25.6 6.9 66 212-280 19-85 (286)
66 cd04893 ACT_GcvR_1 ACT domains 33.0 1.6E+02 0.0034 19.9 6.8 62 212-278 13-74 (77)
67 PF11712 Vma12: Endoplasmic re 32.6 1.7E+02 0.0036 22.7 6.0 19 6-24 79-97 (142)
68 cd00756 MoaE MoaE family. Memb 32.3 84 0.0018 23.9 4.1 46 234-279 24-69 (124)
69 cd04885 ACT_ThrD-I Tandem C-te 32.0 1.5E+02 0.0032 19.4 5.0 40 211-253 9-48 (68)
70 PRK00523 hypothetical protein; 31.9 1.7E+02 0.0037 20.0 5.6 36 190-226 22-57 (72)
71 TIGR01893 aa-his-dipept aminoa 31.8 1.7E+02 0.0036 27.6 7.0 69 205-273 302-382 (477)
72 PRK10553 assembly protein for 31.5 1.9E+02 0.0041 20.5 7.4 61 210-279 15-75 (87)
73 PF01810 LysE: LysE type trans 29.9 2.9E+02 0.0063 22.1 7.7 66 138-203 22-87 (191)
74 TIGR02790 nickel_nikC nickel A 29.8 3.5E+02 0.0077 23.1 10.8 55 146-202 95-151 (258)
75 COG4756 Predicted cation trans 29.8 3.8E+02 0.0082 23.4 8.4 58 69-126 39-96 (367)
76 PF06570 DUF1129: Protein of u 29.2 3.3E+02 0.0071 22.5 12.7 16 113-128 186-201 (206)
77 PRK09577 multidrug efflux prot 29.0 1.7E+02 0.0038 30.7 7.1 61 204-270 52-116 (1032)
78 PF10086 DUF2324: Putative mem 28.5 3.6E+02 0.0078 22.7 9.9 19 139-157 188-206 (223)
79 cd04877 ACT_TyrR N-terminal AC 28.3 51 0.0011 22.1 2.2 26 209-234 46-71 (74)
80 PF04219 DUF413: Protein of un 27.9 29 0.00062 25.0 0.8 13 58-70 4-16 (93)
81 PRK15127 multidrug efflux syst 27.6 52 0.0011 34.6 3.0 45 224-270 69-117 (1049)
82 COG4956 Integral membrane prot 27.0 4.7E+02 0.01 23.5 13.0 39 169-207 105-143 (356)
83 PRK10503 multidrug efflux syst 26.2 99 0.0021 32.6 4.7 44 224-270 80-127 (1040)
84 KOG3491 Predicted membrane pro 26.1 1.4E+02 0.003 19.4 3.6 31 56-94 29-59 (65)
85 TIGR01219 Pmev_kin_ERG8 phosph 26.1 3.4E+02 0.0074 25.7 7.8 85 187-282 357-443 (454)
86 cd04875 ACT_F4HF-DF N-terminal 26.0 2E+02 0.0044 19.0 6.2 59 212-272 11-71 (74)
87 COG0841 AcrB Cation/multidrug 25.2 4.3E+02 0.0093 27.9 8.9 53 224-279 70-128 (1009)
88 PRK10555 aminoglycoside/multid 24.8 31 0.00067 36.2 0.7 62 204-270 52-117 (1037)
89 PRK09579 multidrug efflux prot 24.4 1.1E+02 0.0024 32.1 4.6 44 224-270 71-118 (1017)
90 PRK07079 hypothetical protein; 24.4 1.6E+02 0.0034 27.7 5.4 40 240-279 322-361 (469)
91 TIGR00489 aEF-1_beta translati 23.8 2.7E+02 0.0059 19.8 7.3 67 208-279 16-83 (88)
92 PF07687 M20_dimer: Peptidase 23.6 85 0.0018 22.4 2.8 31 240-270 76-106 (111)
93 TIGR01608 citD citrate lyase a 23.1 97 0.0021 22.3 2.7 25 258-282 43-67 (92)
94 PF00736 EF1_GNE: EF-1 guanine 22.3 2.9E+02 0.0064 19.6 7.8 67 209-278 15-83 (89)
95 PF11381 DUF3185: Protein of u 21.7 2.4E+02 0.0053 18.4 5.7 44 75-118 8-55 (59)
96 PF15220 HILPDA: Hypoxia-induc 21.6 2.3E+02 0.005 18.1 4.6 28 74-101 7-35 (63)
97 PF00873 ACR_tran: AcrB/AcrD/A 21.5 80 0.0017 33.1 3.0 62 203-270 51-112 (1021)
98 PF02790 COX2_TM: Cytochrome C 21.3 2.7E+02 0.0059 18.8 6.8 31 57-87 50-80 (84)
99 PRK11027 hypothetical protein; 20.9 45 0.00097 24.9 0.7 15 58-72 13-27 (112)
100 TIGR00907 2A0304 amino acid pe 20.6 7E+02 0.015 23.3 10.9 14 56-69 408-421 (482)
101 PRK11023 outer membrane lipopr 20.4 2E+02 0.0043 23.6 4.6 29 200-231 80-108 (191)
102 PF06570 DUF1129: Protein of u 20.4 4.9E+02 0.011 21.4 15.5 26 76-101 82-107 (206)
103 PF14581 SseB_C: SseB protein 20.3 2.1E+02 0.0045 20.7 4.3 64 205-270 12-75 (108)
104 cd04886 ACT_ThrD-II-like C-ter 20.2 2.4E+02 0.0052 17.8 4.4 39 212-252 10-52 (73)
105 PRK05783 hypothetical protein; 20.2 3.2E+02 0.007 19.2 5.1 21 263-283 63-84 (84)
106 cd04871 ACT_PSP_2 ACT domains 20.2 2.9E+02 0.0062 19.1 4.8 36 242-279 48-83 (84)
No 1
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-57 Score=387.38 Aligned_cols=272 Identities=27% Similarity=0.468 Sum_probs=254.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHH
Q 023355 1 MKRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALF 80 (283)
Q Consensus 1 ~r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~ 80 (283)
+|++++++.+|+.++++|+++|+++||+||+||+.|++.|+++.++++++.++++||++++|||||+|+|.+++++++++
T Consensus 21 ~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~ 100 (296)
T COG1230 21 ERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALL 100 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 023355 81 LLFMSFSLAVEALHAFIQDESEHKHYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAGL 160 (283)
Q Consensus 81 l~~~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~v 160 (283)
++..++++++|+++|+++|++.+...+++++++++++|+++++.+++. +.++.|+|+.++|.++|.++|+++
T Consensus 101 Li~~s~~I~~EAi~R~~~P~~i~~~~ml~va~~GL~vN~~~a~ll~~~--------~~~~lN~r~a~LHvl~D~Lgsv~v 172 (296)
T COG1230 101 LIVVSLLILWEAIQRLLAPPPIHYSGMLVVAIIGLVVNLVSALLLHKG--------HEENLNMRGAYLHVLGDALGSVGV 172 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHhhCC--------CcccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888999999999999999999999986 347899999999999999999999
Q ss_pred HHHHHHHh-hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCCcccccccEEEeec
Q 023355 161 ILASWFLS-LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELV 239 (283)
Q Consensus 161 l~~~~~~~-~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~ 239 (283)
+++.+... +||+|+||+.+++++++++..+++++|++..+|++.+|+++|.+++++ .+.+.|||.++||+|+|+++
T Consensus 173 Iia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~---~l~~~~~v~~vhdlHvWsi~ 249 (296)
T COG1230 173 IIAAIVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVRE---ALLRIPGVASVHDLHVWSIT 249 (296)
T ss_pred HHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHH---HHhcCCCccceeecccCCCC
Confidence 99988775 699999999999999999999999999999999999999988776665 55688999999999999999
Q ss_pred CCeEEEEEEEEEccCCCchhHHHHHHh-hhccCCCCeeEEeeccC
Q 023355 240 PGHVVGSLSLQVNKGVDDRPILQFVHG-LYHDLGVQDLTVQIDYD 283 (283)
Q Consensus 240 ~~~~~~~i~i~v~~~~~~~~i~~~i~~-i~~~~~i~~vti~~e~~ 283 (283)
+++..+++|+++++..+.+++.+++++ +.++||++|+|||+|++
T Consensus 250 ~~~~~~t~Hv~v~~~~~~~~~~~~~~~~l~~~~~I~hvTiQ~e~~ 294 (296)
T COG1230 250 GGEHALTLHVVVDEVADADAALDQIVRRLLEKYGIEHVTIQLETE 294 (296)
T ss_pred CCceeEEEEEEecCccchHHHHHHHHHHHhhhcCcceEEEEecCC
Confidence 999999999999966666667788766 56789999999999974
No 2
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=5.3e-54 Score=380.82 Aligned_cols=272 Identities=26% Similarity=0.434 Sum_probs=247.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHH
Q 023355 1 MKRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALF 80 (283)
Q Consensus 1 ~r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~ 80 (283)
+|++++++++|+++++.|+++|+++||.|+++||+||+.|++++++++++.+.++||||++|||||+|+|++++++++++
T Consensus 18 ~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~ 97 (312)
T PRK03557 18 ARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIA 97 (312)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 023355 81 LLFMSFSLAVEALHAFIQDESEHKHYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAGL 160 (283)
Q Consensus 81 l~~~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~v 160 (283)
+++++++++++|++++.+|++.+..++++++++++++|.+++++.++.. +.++.+++++++|+++|.++++++
T Consensus 98 l~~~~~~i~~eai~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~s~~l~a~~~h~~~D~l~s~~v 170 (312)
T PRK03557 98 LVVITILIVWEAIERFRTPRPVAGGMMMAIAVAGLLANILSFWLLHHGS-------EEKNLNVRAAALHVLGDLLGSVGA 170 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHHhccc-------ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877666777778889999998888776642 457789999999999999999999
Q ss_pred HHHHHHHh-hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHh-ccCCCcccccccEEEee
Q 023355 161 ILASWFLS-LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQI-VSREDVTEVSQARFWEL 238 (283)
Q Consensus 161 l~~~~~~~-~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i-~~~~~v~~v~~~~~~~~ 238 (283)
+++.++.. +||+|+||++++++++++++.+++++|++.+.|+|++|++.+. +++.+.+ ++.|+|+++|++|+|+.
T Consensus 171 lv~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~---~~i~~~i~~~~~gV~~vh~l~~~~~ 247 (312)
T PRK03557 171 IIAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDI---AELKRRLCREIPEVRNVHHVHVWMV 247 (312)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCH---HHHHHHHHhcCCCceeEEEEEEEEe
Confidence 99987654 5999999999999999999999999999999999999876554 4555555 46899999999999999
Q ss_pred cCCeEEEEEEEEEccCCCchhHHHHHHh-hhccCCCCeeEEeeccC
Q 023355 239 VPGHVVGSLSLQVNKGVDDRPILQFVHG-LYHDLGVQDLTVQIDYD 283 (283)
Q Consensus 239 ~~~~~~~~i~i~v~~~~~~~~i~~~i~~-i~~~~~i~~vti~~e~~ 283 (283)
| +.+.+++|++++|+.+.+++++++|+ +.+++++.++|||+||+
T Consensus 248 G-~~~~v~~hv~v~~~~~~~~i~~~i~~~l~~~~~i~~vtIh~e~~ 292 (312)
T PRK03557 248 G-EKPVMTLHVQVIPPHDHDALLDRIQDYLMHHYQIEHATIQMEYQ 292 (312)
T ss_pred C-CeEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 7 56788999999998889999999988 45678999999999985
No 3
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-53 Score=370.47 Aligned_cols=273 Identities=18% Similarity=0.267 Sum_probs=254.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHH
Q 023355 1 MKRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALF 80 (283)
Q Consensus 1 ~r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~ 80 (283)
+|..+++++.|+++++.|+++|+++||.||+|||+||+.|+++++..++++++++||||++|||||+|+|++++++.+++
T Consensus 12 ~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~~~~~ 91 (304)
T COG0053 12 RRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASLIVSIL 91 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHH
Q 023355 81 LLFMSFSLAVEALHAFIQDESEH-KHYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAG 159 (283)
Q Consensus 81 l~~~~~~i~~~ai~~l~~~~~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~ 159 (283)
++++|++++++++.++++|+++. +..++++++++++++.....+.++.++ +.+|..+.++++|.++|.+++++
T Consensus 92 i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~k------k~~S~aL~Ada~h~~sD~~ts~~ 165 (304)
T COG0053 92 IFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGK------KTNSQALIADALHHRSDVLTSLA 165 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999987744 567888999999999999999999877 88999999999999999999999
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCCcccccccEEEeec
Q 023355 160 LILASWFLSLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELV 239 (283)
Q Consensus 160 vl~~~~~~~~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~ 239 (283)
+++|....++||+|+||+++++|+++|++++++++|++...|+|+. .|++..+++.+.+.+.|||.++|++|+|+ +
T Consensus 166 ~lvgl~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~---~~~~~~~~i~~~i~~~~~V~~v~~lr~R~-~ 241 (304)
T COG0053 166 VLVGLLGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAA---LDPEDLEKIRAIILSVPGVKGVHDLRTRK-S 241 (304)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC---CCHHHHHHHHHHHhcCCcceeeecceeee-e
Confidence 9999997678999999999999999999999999999999999975 45577888888888999999999999997 5
Q ss_pred CCeEEEEEEEEEccCC---CchhHHHHHHh-hhccCC-CCeeEEeeccC
Q 023355 240 PGHVVGSLSLQVNKGV---DDRPILQFVHG-LYHDLG-VQDLTVQIDYD 283 (283)
Q Consensus 240 ~~~~~~~i~i~v~~~~---~~~~i~~~i~~-i~~~~~-i~~vti~~e~~ 283 (283)
|+.+++++|++++|++ ++|++.+++|+ +.++++ +.+++||+||.
T Consensus 242 G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~ 290 (304)
T COG0053 242 GSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPL 290 (304)
T ss_pred CCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 6788999999999996 47899999987 566676 99999999994
No 4
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=7.6e-52 Score=365.71 Aligned_cols=272 Identities=17% Similarity=0.164 Sum_probs=246.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHH
Q 023355 2 KRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFL 81 (283)
Q Consensus 2 r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l 81 (283)
|..++++++|+++++.|+++|+++||.+|++||+||+.|++++++++++.+.++||||++|||||+|+|+++++++++++
T Consensus 11 ~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l 90 (299)
T PRK09509 11 RAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFI 90 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 023355 82 LFMSFSLAVEALHAFIQDESEH-KHYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAGL 160 (283)
Q Consensus 82 ~~~~~~i~~~ai~~l~~~~~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~v 160 (283)
++.++++++++++++++|++.+ +..+++++++++++|.+.+++.++.++ +.+|++++++++|+++|++++.++
T Consensus 91 ~~~~~~~~~esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~------~~~s~~l~a~~~~~~~D~~~s~~v 164 (299)
T PRK09509 91 SGSALFLFLTGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRWVVR------KTQSQAVRADMLHYQSDVMMNGAI 164 (299)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH------HhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998755 456677888899999988888777655 668999999999999999999999
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCCcccccccEEEeecC
Q 023355 161 ILASWFLSLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVP 240 (283)
Q Consensus 161 l~~~~~~~~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~ 240 (283)
++++.+.++||+|+||++++++++++++.+++++|++.+.|+|++|++ +..+++.+.+.+.|+|.++|++|+|+.|+
T Consensus 165 l~~~~~~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~---~~~~~I~~~i~~~~~v~~v~~l~~~~~G~ 241 (299)
T PRK09509 165 LLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPD---EERQEIIDIVTSWPGVSGAHDLRTRQSGP 241 (299)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHhCCCCcCceeeeeEeeCC
Confidence 999888888999999999999999999999999999999999987644 56677777788889999999999999775
Q ss_pred CeEEEEEEEEEccCC---CchhHHHHHHh-hhccCCCCeeEEeeccC
Q 023355 241 GHVVGSLSLQVNKGV---DDRPILQFVHG-LYHDLGVQDLTVQIDYD 283 (283)
Q Consensus 241 ~~~~~~i~i~v~~~~---~~~~i~~~i~~-i~~~~~i~~vti~~e~~ 283 (283)
+..+++|+.++++. +.|++.+++|+ +.++++..+++||+||.
T Consensus 242 -~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~~v~ihveP~ 287 (299)
T PRK09509 242 -TRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGSDVIIHQDPC 287 (299)
T ss_pred -eEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 55779999999986 46788999988 45667777899999993
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=2.6e-49 Score=345.25 Aligned_cols=261 Identities=23% Similarity=0.409 Sum_probs=238.4
Q ss_pred HHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023355 14 YSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLFMSFSLAVEAL 93 (283)
Q Consensus 14 ~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~~~~~i~~~ai 93 (283)
++++|+++|+++||.+|++||+||+.|++++++.+++.+.++||||++|||||+|+|+++++++++++++.+++++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCC-cchhHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 023355 94 HAFIQDES-EHKHYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAGLILASWFLSLGVQ 172 (283)
Q Consensus 94 ~~l~~~~~-~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~vl~~~~~~~~~~~ 172 (283)
+++++|++ ++..++++++++++++|.+.++++++.++ +.+|+++++++.|+++|.+++++++++..+..++|+
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~~~ 155 (268)
T TIGR01297 82 ERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRVGH------RLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWH 155 (268)
T ss_pred HHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhCc------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999874 55667788888999999999999888665 778999999999999999999999999988877789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEc
Q 023355 173 NAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVN 252 (283)
Q Consensus 173 ~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~ 252 (283)
|+||++++++++++++.++++++++.+.|+|.+|++ +..+++.+.+.+.|+|.++|++|+|+.|++++.+++|+++|
T Consensus 156 ~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~---~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~ 232 (268)
T TIGR01297 156 WADPIAALLISLLILYTAFRLLKESINVLLDAAPDE---EDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVD 232 (268)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc---ccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEEC
Confidence 999999999999999999999999999999998854 55667777788889999999999999988788999999999
Q ss_pred cCCC---chhHHHHHHh-hhcc-CCCCeeEEeeccC
Q 023355 253 KGVD---DRPILQFVHG-LYHD-LGVQDLTVQIDYD 283 (283)
Q Consensus 253 ~~~~---~~~i~~~i~~-i~~~-~~i~~vti~~e~~ 283 (283)
++.+ +|++.+++|+ ++++ ++++++|||+||.
T Consensus 233 ~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 233 PDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred CCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 9964 5788888876 6665 7899999999994
No 6
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-47 Score=323.98 Aligned_cols=282 Identities=35% Similarity=0.648 Sum_probs=260.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHH
Q 023355 1 MKRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALF 80 (283)
Q Consensus 1 ~r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~ 80 (283)
+|.++..+.+|+.++.++++.|..+||+.|++|++|+++|+.+....+++..++++|++.+|||||.|.|++++|.++++
T Consensus 34 sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vf 113 (354)
T KOG1484|consen 34 SRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVF 113 (354)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccc---------------------------
Q 023355 81 LLFMSFSLAVEALHAFIQDESEHKHYLIVSAVTNLLVNLIGVWFFRNYARINL--------------------------- 133 (283)
Q Consensus 81 l~~~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~--------------------------- 133 (283)
+.+.+++++.|+++|+++|++..++..+++++.++++|++..+.+++..-+-+
T Consensus 114 lvl~a~fi~~Es~eRl~~ppei~t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~~~~~ 193 (354)
T KOG1484|consen 114 LVLIAFFIFSESVERLFDPPEIHTNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVWDLHH 193 (354)
T ss_pred HHHHHHHHhHHHHHHhcCchhcCCceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhcccccccccccccc
Confidence 99999999999999999999999999899999999999999998887521100
Q ss_pred ----ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 023355 134 ----VYRNPEDMNYHSVCLHVLADSIRSAGLILASWFLS-LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPS 208 (283)
Q Consensus 134 ----~~~~~~~~~l~a~~~~~~~D~l~s~~vl~~~~~~~-~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~ 208 (283)
......+..+...++|.++|.+++++++++.++.. +||.++||+.+++|+++++.+.+|++|++..+||+++||+
T Consensus 194 ~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tPp~ 273 (354)
T KOG1484|consen 194 HAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRTPPH 273 (354)
T ss_pred ccccccCCcccccccchhHHHHHHHhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 00011234566899999999999999999998875 8999999999999999999999999999999999999998
Q ss_pred CChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEeeccC
Q 023355 209 IPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQIDYD 283 (283)
Q Consensus 209 ~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~e~~ 283 (283)
.+ ..+++.++++.+.+||.++.+.|+|+.+.+.++.++|++|.+|.|++.+..++.++++..|+++.|||+|.|
T Consensus 274 ~~-~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dade~~vl~~V~~~~~~~gV~~ltvQv~~~ 347 (354)
T KOG1484|consen 274 LE-NSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDADEQSVLAHVTRKLEDAGVKDLTVQVEKE 347 (354)
T ss_pred hh-hHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCcchhHHHHHHHHHHHhcceeEEEEEEecc
Confidence 76 778889999999999999999999999999999999999999999999999999999999999999999875
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=3.3e-47 Score=334.59 Aligned_cols=273 Identities=25% Similarity=0.422 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 023355 4 LFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLF 83 (283)
Q Consensus 4 l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~ 83 (283)
+++++++|++++++|+++|+.+||.++++||+|++.|+++.++++++.+.++||||++|||||+|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcch-hHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 023355 84 MSFSLAVEALHAFIQDESEHK-HYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAGLIL 162 (283)
Q Consensus 84 ~~~~i~~~ai~~l~~~~~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~vl~ 162 (283)
.+++++.+++++++++++.++ .+++.++++++++|.+.+++.++.+|+ .+.+++++++++.|++.|.+.++++++
T Consensus 81 ~~~~~~~~si~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~----~~~~s~~l~~~~~~~~~d~~~s~~v~i 156 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPSPPGIVLIVALVSIIVNLLLAWYLRRVGKR----LQRRSPALRADALHSLIDVLSSLAVLI 156 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSSTTTS-THHHHHHHHHHHHHHHHHHHHHHH----S---SHHHHHHHHHHHHHTS-SSTS-S
T ss_pred hHHHHHHHHhhcccccccchhhhhhhhhhhhhhhHHHHHHHHHhhcccc----cccccccchhhhhhcccchhHHHHHHH
Confidence 999999999999999976554 444444888999999999999986542 134599999999999999999999999
Q ss_pred HHHHHhh-CCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCCcccccccEEEeecC
Q 023355 163 ASWFLSL-GVQN-AEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVP 240 (283)
Q Consensus 163 ~~~~~~~-~~~~-~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~ 240 (283)
+.++..+ ++.+ +||++++++++++++.+++++|++.+.|+|++|++ +..+++.+.+++.|+|.+++++|+|+.|+
T Consensus 157 ~~~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~---~~~~~i~~~i~~~~~v~~v~~~~~~~~g~ 233 (284)
T PF01545_consen 157 SLLLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDP---ELVEKIRRIIESVPGVIEVHDLRVWQVGR 233 (284)
T ss_dssp SSTSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH---HHHHHHHHHHHHTSS-SEEEEEEEEEETT
T ss_pred HHHHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccc---cchhHHHHhhccCCceEeccceEEEEecC
Confidence 9888764 4555 99999999999999999999999999999987643 55566666777789999999999999998
Q ss_pred CeEEEEEEEEEccCC---CchhHHHHHHhh-hccC-CCCeeEEeeccC
Q 023355 241 GHVVGSLSLQVNKGV---DDRPILQFVHGL-YHDL-GVQDLTVQIDYD 283 (283)
Q Consensus 241 ~~~~~~i~i~v~~~~---~~~~i~~~i~~i-~~~~-~i~~vti~~e~~ 283 (283)
+++++++|+++||+. +.+++++++++. .+++ ++.++|||+||+
T Consensus 234 ~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~ 281 (284)
T PF01545_consen 234 NKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPD 281 (284)
T ss_dssp -EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEEC
T ss_pred CcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEec
Confidence 899999999999996 467889999884 5565 899999999996
No 8
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-43 Score=301.62 Aligned_cols=280 Identities=21% Similarity=0.371 Sum_probs=255.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHH
Q 023355 1 MKRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALF 80 (283)
Q Consensus 1 ~r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~ 80 (283)
+|.++.+.++.+.+.+.|.+.|+..||+|+++|+.|.+.|..+.+++++++|.+++|++++.+|||+|.|.++++++...
T Consensus 72 ~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~ 151 (379)
T KOG1482|consen 72 ERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLL 151 (379)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CcchhHHHHHHHHHHHHHHHHHHHHhhccc-ccc--ccCCC--------CCchhHHHHH
Q 023355 81 LLFMSFSLAVEALHAFIQDE-SEHKHYLIVSAVTNLLVNLIGVWFFRNYAR-INL--VYRNP--------EDMNYHSVCL 148 (283)
Q Consensus 81 l~~~~~~i~~~ai~~l~~~~-~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~--~~~~~--------~~~~l~a~~~ 148 (283)
+++....+++++++|+++++ +.+...+++.+.+++++|.++.++++...+ |.+ +..++ .+.|+++++.
T Consensus 152 IW~~tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~nvraAyi 231 (379)
T KOG1482|consen 152 IWVVTGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNLNVRAAFV 231 (379)
T ss_pred HHHhhhhhHHHHHhhhhcCceeecceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccchHHHHHHH
Confidence 99999999999999999998 577788888888999999999988876532 111 11111 2589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCC
Q 023355 149 HVLADSIRSAGLILASWFLSL--GVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSRED 226 (283)
Q Consensus 149 ~~~~D~l~s~~vl~~~~~~~~--~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~ 226 (283)
|.+.|...|+|++++..+.+| +|..+||+.+++.+...+.+..+++|+....||+.+|.+.+.+.+++ .+...+|
T Consensus 232 HVlGDliQSvGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~---~l~~ieg 308 (379)
T KOG1482|consen 232 HVLGDLIQSVGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKK---GLLSIEG 308 (379)
T ss_pred HHHHHHHHHHHHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHH---HHhhhcc
Confidence 999999999999999998876 68899999999999999999999999999999999999999887776 4556789
Q ss_pred cccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHh-hhccCCCCeeEEeeccC
Q 023355 227 VTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHG-LYHDLGVQDLTVQIDYD 283 (283)
Q Consensus 227 v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~-i~~~~~i~~vti~~e~~ 283 (283)
|+.||++|+|.++=++..+++|+..+|+.+.+++.+++.+ +.++|++.++|+|+||.
T Consensus 309 V~~VHdLhIWsiTv~k~~ls~Hv~i~~~ad~~~vL~~~~~~i~~~~~~~~vTiQie~~ 366 (379)
T KOG1482|consen 309 VKAVHDLHIWSITVGKVALSVHLAIDSEADAEEVLDEARSLIKRRYGISHVTIQIEPY 366 (379)
T ss_pred eeEEEEEEEEEEecCceEEEEEEeecCCCCHHHHHHHHHHHHHhhcceEEEEEEecCC
Confidence 9999999999999999999999999999999999999987 56679999999999984
No 9
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-43 Score=305.75 Aligned_cols=278 Identities=25% Similarity=0.457 Sum_probs=248.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHH
Q 023355 2 KRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFL 81 (283)
Q Consensus 2 r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l 81 (283)
++++..+++.++++++|++.|..++|+||++|++|++.|+++.+.++++.+.+++.+++++|||+.|.|.++++++++|+
T Consensus 9 ~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl 88 (404)
T KOG1483|consen 9 LRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFL 88 (404)
T ss_pred cceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHH
Confidence 46778899999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCC-cchhHHHHHHHHHHHHHHHHHHHHhhccccc----------------------------
Q 023355 82 LFMSFSLAVEALHAFIQDES-EHKHYLIVSAVTNLLVNLIGVWFFRNYARIN---------------------------- 132 (283)
Q Consensus 82 ~~~~~~i~~~ai~~l~~~~~-~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~---------------------------- 132 (283)
...++.++.|+++|+++|++ .++...+..++++++.|.+..++++..+..+
T Consensus 89 ~alc~~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~~~ 168 (404)
T KOG1483|consen 89 TALCVSILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHSHAI 168 (404)
T ss_pred HHHHHHHHHHHHHhhcCCccccCceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCchhcc
Confidence 99999999999999999988 4556677888999999999999988663110
Q ss_pred ---------------------------c----------------c-------cCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 023355 133 ---------------------------L----------------V-------YRNPEDMNYHSVCLHVLADSIRSAGLIL 162 (283)
Q Consensus 133 ---------------------------~----------------~-------~~~~~~~~l~a~~~~~~~D~l~s~~vl~ 162 (283)
+ . .++.++.|++..++|.+.|+++++.++.
T Consensus 169 G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~Vi~ 248 (404)
T KOG1483|consen 169 GCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSIIVIV 248 (404)
T ss_pred CCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccceEEEE
Confidence 0 0 0011456788999999999999999999
Q ss_pred HHHHHhh-CC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCCcccccccEEEee
Q 023355 163 ASWFLSL-GV---QNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWEL 238 (283)
Q Consensus 163 ~~~~~~~-~~---~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~ 238 (283)
+.+.+|+ +| .|+||+.+++++++++.++||++|++..+|++.+|.++|.+++++ ++.++|||.+||++|+|++
T Consensus 249 ~A~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~---~l~~~~gv~~vh~lhvWqL 325 (404)
T KOG1483|consen 249 SALFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEK---DLLTVPGVISVHDLHVWQL 325 (404)
T ss_pred EEEEEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHH---HHhcCcceeeeeeeeeeee
Confidence 8877763 44 468999999999999999999999999999999999999877775 5566899999999999999
Q ss_pred cCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEeecc
Q 023355 239 VPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQIDY 282 (283)
Q Consensus 239 ~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~e~ 282 (283)
.++++++++||+++...+.-++.+++++.++++||..+|||+|.
T Consensus 326 ~~~r~IAt~Hi~~~~p~~~~~~a~~ir~~fh~~GIhs~TiqPeF 369 (404)
T KOG1483|consen 326 AGSRIIATIHIQIQNPKEYMKIAEKIRSYFHDQGIHSTTIQPEF 369 (404)
T ss_pred ccceEEEEEEEEecCcHHHHHHHHHHHHHHHhcCCcceeeccch
Confidence 99999999999999877777999999999999999999999985
No 10
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-38 Score=275.86 Aligned_cols=269 Identities=13% Similarity=0.142 Sum_probs=228.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHH
Q 023355 2 KRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFL 81 (283)
Q Consensus 2 r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l 81 (283)
|..+++++.|+++++.|.++|+.+||+|++||++|++.|.++.++.++..+.+++||+.+||+|++|.|+++.+..+++|
T Consensus 115 ~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~iM 194 (412)
T KOG1485|consen 115 RAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVIM 194 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCC-------cc-h----hHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHH
Q 023355 82 LFMSFSLAVEALHAFIQDES-------EH-K----HYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLH 149 (283)
Q Consensus 82 ~~~~~~i~~~ai~~l~~~~~-------~~-~----~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~ 149 (283)
...|+.++++++.++..|.. +. . .+...+++....+.+..+++++. +.+|..+++.++|
T Consensus 195 a~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~---------~~ns~iv~a~A~d 265 (412)
T KOG1485|consen 195 AMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCAI---------KTNSNIVRANAWD 265 (412)
T ss_pred HHHHHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHHH---------hcCcHHHHHHHHH
Confidence 99999999999998887322 11 1 13344444445555555555555 4577899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhc-cCCCcc
Q 023355 150 VLADSIRSAGLILASWFLSLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIV-SREDVT 228 (283)
Q Consensus 150 ~~~D~l~s~~vl~~~~~~~~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~-~~~~v~ 228 (283)
.+.|.+++..++++..+.++.|+|+||+++++++++++++|++..+++...|.|+ +.++|.++++..... +.+.++
T Consensus 266 Hr~D~lTn~vaLva~~la~~~~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~---~a~pe~L~~~~~~~l~~~~~i~ 342 (412)
T KOG1485|consen 266 HRNDVLTNSVALVAASLAYYYNYWLDPIGAILVSTYIIYTGGRTGLENIKELVGR---SAPPEYLEIITYLILQHGKLIK 342 (412)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhhcccchhhhhhheehhhhhhHHHHHHHHHHhCC---CCCHHHHHHHHHHHHhhcCccc
Confidence 9999999999999999988778899999999999999999999999999999997 356688888776654 456899
Q ss_pred cccccEEEeecCCeEEEEEEEEEccCCC---chhHHHHHHhhhcc-CCCCeeEEeeccC
Q 023355 229 EVSQARFWELVPGHVVGSLSLQVNKGVD---DRPILQFVHGLYHD-LGVQDLTVQIDYD 283 (283)
Q Consensus 229 ~v~~~~~~~~~~~~~~~~i~i~v~~~~~---~~~i~~~i~~i~~~-~~i~~vti~~e~~ 283 (283)
.++.++.+..|. .+.+++|+++|++++ +|++.+..++-++. ..+..+.+|.|+|
T Consensus 343 ~idtv~~y~~g~-~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~e 400 (412)
T KOG1485|consen 343 HIDTVRAYTFGS-HYFVEVHIVLDEDLSLSVAHDIGETLQKKIELLPEVERAFVHIDYE 400 (412)
T ss_pred cceeeeeecccc-eEEEEEeeecCCCCccHHHHHHHHHHHHHHhhcchheeeeeecCcc
Confidence 999999999865 556699999999975 57788777664443 5688899998875
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=214.52 Aligned_cols=270 Identities=17% Similarity=0.174 Sum_probs=233.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhc-cCCCCCCCCCchhHHHHHHHHHHHH
Q 023355 2 KRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASR-QKPDFAYTYGYKRLEVLSAFTNALF 80 (283)
Q Consensus 2 r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~-~~~d~~~~~G~~r~e~l~~~~~~~~ 80 (283)
+-+.+|++.+.+++..++++|.++||.+++-||++|+.|+..+.+++...++.. +|.|.|||||++..|++.-.+++..
T Consensus 20 ~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing~l 99 (314)
T COG3965 20 LYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAINGTL 99 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhccHH
Confidence 356789999999999999999999999999999999999999999999999887 6667799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-cchhHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHH
Q 023355 81 LLFMSFSLAVEALHAFIQDES-EHKHYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAG 159 (283)
Q Consensus 81 l~~~~~~i~~~ai~~l~~~~~-~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~ 159 (283)
+...++|.+++++..++++.+ .+++++.++++++...|...+|..+|.+| +..|+-+.++...|+.|.+.|.+
T Consensus 100 l~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nr------r~~s~lIald~kqW~Mst~lS~a 173 (314)
T COG3965 100 LALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNR------RLKSPLIALDTKQWLMSTCLSAA 173 (314)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhc------cCCCchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999865 78899999999999999999999999776 77899999999999999999999
Q ss_pred HHHHHHHHh----hC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCCccccc
Q 023355 160 LILASWFLS----LG----VQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVS 231 (283)
Q Consensus 160 vl~~~~~~~----~~----~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~~v~ 231 (283)
+++++...+ +. .+|+||....+++.+++..+++.++.+.++.+..+|.+ ..+.++....++.+..+..+ +
T Consensus 174 l~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~e-l~q~ies~~~~~v~k~~f~~-~ 251 (314)
T COG3965 174 LFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPNE-LQQSIESHAHEIVEKYGFPS-Y 251 (314)
T ss_pred HHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHHHhcCch-H
Confidence 999987764 22 26799999999999999999999999999999999984 55788888888877677766 5
Q ss_pred ccEEEeecCCeEEEEEEEEEccCC------CchhHHHHHHhhhccCC-CCeeEEee
Q 023355 232 QARFWELVPGHVVGSLSLQVNKGV------DDRPILQFVHGLYHDLG-VQDLTVQI 280 (283)
Q Consensus 232 ~~~~~~~~~~~~~~~i~i~v~~~~------~~~~i~~~i~~i~~~~~-i~~vti~~ 280 (283)
+.++.++|++. .+++|..+|++. +.++|++++++-+.+.| -..+|+-+
T Consensus 252 ~~yvArVGr~l-~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsf 306 (314)
T COG3965 252 HVYVARVGRGL-FIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSF 306 (314)
T ss_pred HHHHHHhccce-EEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEE
Confidence 56677877755 569999998874 45788999987544322 33466654
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.84 E-value=3.6e-20 Score=160.18 Aligned_cols=213 Identities=15% Similarity=0.164 Sum_probs=156.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHH
Q 023355 2 KRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFL 81 (283)
Q Consensus 2 r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l 81 (283)
|.+..++++|.+-+..|..+++++||.+|+|+++||+.|..++++..++++.+.|.||..|||||.+..++.++++++-+
T Consensus 207 rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGI 286 (503)
T KOG2802|consen 207 RVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGI 286 (503)
T ss_pred ceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccce
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH-HHHHHHHhcCCCCcchh-HHHHHHHHHHHHHHH---HHHH-Hhhcccccc-----ccCCCCCchhHHHHHHH
Q 023355 82 LFMSFSL-AVEALHAFIQDESEHKH-YLIVSAVTNLLVNLI---GVWF-FRNYARINL-----VYRNPEDMNYHSVCLHV 150 (283)
Q Consensus 82 ~~~~~~i-~~~ai~~l~~~~~~~~~-~~~~~~~~~l~v~~~---~~~~-~~~~~~~~~-----~~~~~~~~~l~a~~~~~ 150 (283)
+.+|..+ ++.+++.+++|+|+.+. |+..+..-+++.-.. .+.- .++.++.+. -....++|..-+. .
T Consensus 287 fc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DPs~nvV---l 363 (503)
T KOG2802|consen 287 FCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDPSTNVV---L 363 (503)
T ss_pred eeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCcceEE---E
Confidence 8777766 89999999999986553 333332233433222 2222 122222100 0012233322222 2
Q ss_pred HHHHHHHHHHHHHHH---HH-hhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCC
Q 023355 151 LADSIRSAGLILASW---FL-SLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSRED 226 (283)
Q Consensus 151 ~~D~l~s~~vl~~~~---~~-~~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~ 226 (283)
..|..+-.|++++.. +. .+|.|..|++++++++.++-..
T Consensus 364 ~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV------------------------------------- 406 (503)
T KOG2802|consen 364 LEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV------------------------------------- 406 (503)
T ss_pred ecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH-------------------------------------
Confidence 456555555555432 22 3699999999999988764332
Q ss_pred cccccccEEEeecCCeEEEEEEEEEccC
Q 023355 227 VTEVSQARFWELVPGHVVGSLSLQVNKG 254 (283)
Q Consensus 227 v~~v~~~~~~~~~~~~~~~~i~i~v~~~ 254 (283)
+.+++|++...+|.+.+....++.+|+.
T Consensus 407 e~diyDvK~~diG~g~vRfKAE~DFdGr 434 (503)
T KOG2802|consen 407 ENDIYDVKATDIGLGKVRFKAEVDFDGR 434 (503)
T ss_pred HHhhhhccceeeccceeEEEEEeccCch
Confidence 1136888888999999999999998865
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.32 E-value=1.1e-05 Score=71.58 Aligned_cols=89 Identities=20% Similarity=0.257 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 023355 4 LFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLF 83 (283)
Q Consensus 4 l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~ 83 (283)
..++++.+..+...+.-.|.-+||.+|.||+.|..+|.++++..++++-... +|+..++++++++.+++++-
T Consensus 123 ~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~--------~g~~~lD~i~a~~I~~~Il~ 194 (304)
T COG0053 123 ALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPLAALLISLYILK 194 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHHHHHH
Confidence 3567788888888888899999999999999999999999999999998333 77999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 023355 84 MSFSLAVEALHAFIQDE 100 (283)
Q Consensus 84 ~~~~i~~~ai~~l~~~~ 100 (283)
.++.++++++..+++..
T Consensus 195 ~~~~~~~~s~~~L~d~~ 211 (304)
T COG0053 195 TGFRLFKESVNELMDAA 211 (304)
T ss_pred HHHHHHHHHHHHHhCcC
Confidence 99999999999999844
No 14
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.06 E-value=7.6e-05 Score=66.16 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 023355 6 LLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLFMS 85 (283)
Q Consensus 6 ~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~~~ 85 (283)
++++.|.++...+...+..++|.++.+|+.|+..|+++++..+.+...+. +|+..+|++++++.+++++..+
T Consensus 123 ~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~il~~~ 194 (299)
T PRK09509 123 VALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYILYSA 194 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHHHHHH
Confidence 45666666666667777789999999999999999999999888887764 5888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 023355 86 FSLAVEALHAFIQDES 101 (283)
Q Consensus 86 ~~i~~~ai~~l~~~~~ 101 (283)
+.++++++..+++..+
T Consensus 195 ~~i~~~~~~~Ll~~~~ 210 (299)
T PRK09509 195 LRMGYEAVQSLLDRAL 210 (299)
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999999998643
No 15
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.05 E-value=4.7e-05 Score=66.28 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 023355 5 FLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLFM 84 (283)
Q Consensus 5 ~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~~ 84 (283)
..++..|..++..+.-.|...+|.++.+|+.|++.|+.+++..+.+...+. ||+.++|++++++.+++++..
T Consensus 101 ~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i~~~ 172 (268)
T TIGR01297 101 IVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLILYT 172 (268)
T ss_pred HHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHH
Confidence 356677777777777778889999999999999999999999999988775 568899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 023355 85 SFSLAVEALHAFIQDES 101 (283)
Q Consensus 85 ~~~i~~~ai~~l~~~~~ 101 (283)
++.++++++..+++..+
T Consensus 173 ~~~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 173 AFRLLKESINVLLDAAP 189 (268)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999998765
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.19 E-value=0.0042 Score=55.40 Aligned_cols=72 Identities=10% Similarity=0.072 Sum_probs=61.8
Q ss_pred hhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 023355 24 FTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLFMSFSLAVEALHAFIQDESE 102 (283)
Q Consensus 24 ~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~~~~~i~~~ai~~l~~~~~~ 102 (283)
-.+|.++.+|+.|...|+++++..+++...... .|+..++++++++.+++++..++.++++++..+++..|+
T Consensus 147 ~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~ 218 (312)
T PRK03557 147 EEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPV 218 (312)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 357889999999999999999998888765541 345569999999999999999999999999999976554
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.063 Score=48.88 Aligned_cols=85 Identities=12% Similarity=0.113 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 023355 7 LISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLFMSF 86 (283)
Q Consensus 7 ~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~~~~ 86 (283)
++......+..-...+..++|..++|-|.|=..|+++..++|++...+. |.++-++++++.+++++++..++
T Consensus 236 ~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~ii~t~~ 307 (412)
T KOG1485|consen 236 MISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYIIYTGG 307 (412)
T ss_pred hhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheehhhhhh
Confidence 3444444555555667789999999999999999999999999999997 55578999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 023355 87 SLAVEALHAFIQD 99 (283)
Q Consensus 87 ~i~~~ai~~l~~~ 99 (283)
.-..+++..|+..
T Consensus 308 ~t~~~~i~~Lvg~ 320 (412)
T KOG1485|consen 308 RTGLENIKELVGR 320 (412)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999965
No 18
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.18 Score=44.43 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=63.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh--------hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 023355 137 NPEDMNYHSVCLHVLADSIRSAGLILASWFLS--------LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPS 208 (283)
Q Consensus 137 ~~~~~~l~a~~~~~~~D~l~s~~vl~~~~~~~--------~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~ 208 (283)
-.+|..+.+|+.|.++|+++-...+++..... |||.-+..+++++-+++++..+.-+++|+..-+....|..
T Consensus 44 ~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~i~ 123 (296)
T COG1230 44 LTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIH 123 (296)
T ss_pred HhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 35899999999999999999888888877661 4788899999999999999999999999999999866543
No 19
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=91.62 E-value=0.2 Score=43.68 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--hHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCch-hHHHHHHHHHHHHHH
Q 023355 6 LLISLNVAYSTAELAIGLFTG--RVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYK-RLEVLSAFTNALFLL 82 (283)
Q Consensus 6 ~~l~~~~~~~~~~l~~~~~~~--S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~-r~e~l~~~~~~~~l~ 82 (283)
++++.|..+....--.+.-.+ |.++.+++.|...|.+.++..+.+.....-. +.. -++++++++.+.+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~i~ 183 (284)
T PF01545_consen 111 VSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALFIL 183 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHHHh
Confidence 344444444444444444455 9999999999999999998887777665532 233 389999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 023355 83 FMSFSLAVEALHAFIQDES 101 (283)
Q Consensus 83 ~~~~~i~~~ai~~l~~~~~ 101 (283)
..+..++++++..+++..+
T Consensus 184 ~~~~~~~~~~~~~Ll~~~~ 202 (284)
T PF01545_consen 184 YSGYPLIKESIRILLDASP 202 (284)
T ss_dssp HHHHHHHHHHHHHHTT-SH
T ss_pred hhhhhchhhhhcccccccc
Confidence 9999999999999997763
No 20
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=90.19 E-value=9 Score=31.25 Aligned_cols=108 Identities=14% Similarity=0.229 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 023355 81 LLFMSFSLAVEALHAFIQDESEHKHYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAGL 160 (283)
Q Consensus 81 l~~~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~v 160 (283)
+++.|+..+.+++..+++...... .++..++.-++-.+.++..+++......-+..+.+..+.... .....+..+++
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~~--GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv-~~~sm~lWi~v 178 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQVY--GLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLV-AVLSMLLWIAV 178 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcch--hHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHH-HHHHHHHHHHH
Confidence 556677777888999887664332 233222233333333333333321100001112223332211 11222233333
Q ss_pred HHHHHHHhhC-CchhHHHHHHHHHHHHHHHHH
Q 023355 161 ILASWFLSLG-VQNAEVLCLGIVSVAVFMLVM 191 (283)
Q Consensus 161 l~~~~~~~~~-~~~~D~i~~i~i~~~i~~~~~ 191 (283)
.++....-.+ .+-+||++-.+++..++..=+
T Consensus 179 ~i~t~~lPtslN~~L~pi~l~IiGav~lalRf 210 (226)
T COG4858 179 MIATVFLPTSLNPQLPPIALTIIGAVILALRF 210 (226)
T ss_pred HHHHhhCCCcCCcCCchHHHHHHHHHHHHHHH
Confidence 3222211112 245899998888888776543
No 21
>PLN02601 beta-carotene hydroxylase
Probab=83.92 E-value=21 Score=30.89 Aligned_cols=138 Identities=12% Similarity=0.044 Sum_probs=64.4
Q ss_pred HHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchhH--HHHHHHHHHHHHHHHHHH
Q 023355 48 MFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLFMSFSLAVEALHAFIQDES-EHKHY--LIVSAVTNLLVNLIGVWF 124 (283)
Q Consensus 48 l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~~~~~i~~~ai~~l~~~~~-~~~~~--~~~~~~~~l~v~~~~~~~ 124 (283)
-.+.+.++|+. ++++| .+++..+++-+..+++...+--+..-+++.+ +...+ .+.+.+.+.+.+.+.+|+
T Consensus 81 ~~~~~~~~k~~-er~ty------~~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf~Aw~ 153 (303)
T PLN02601 81 RLLKKAEKKKS-ERFTY------LIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEFWARW 153 (303)
T ss_pred HHHHHHHHhhh-hhhHH------HHHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665543 44443 1333444444444554444444444345544 22222 222344566677788887
Q ss_pred Hhhccccc------cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCch--hHH--HHHHHHHHHHHHHHHHHH
Q 023355 125 FRNYARIN------LVYRNPEDMNYHSVCLHVLADSIRSAGLILASWFLSLGVQN--AEV--LCLGIVSVAVFMLVMPLF 194 (283)
Q Consensus 125 ~~~~~~~~------~~~~~~~~~~l~a~~~~~~~D~l~s~~vl~~~~~~~~~~~~--~D~--i~~i~i~~~i~~~~~~~~ 194 (283)
.+|+-=|+ ++.++.+.... -++|.+.-+-++.+..+.++|... .-| ...+.+++.....+|-.+
T Consensus 154 aHKYvMHG~LW~lH~sHH~Pr~g~F------E~NDlFaVifAvpAIaL~~~G~~~~g~~p~~~fgiGlGITlYGiaYffV 227 (303)
T PLN02601 154 AHRALWHDSLWNMHESHHKPREGAF------ELNDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAGLGITVFGMAYMFV 227 (303)
T ss_pred HHHHHHHhcchhhhhhcCCCCCCCc------ccccchhhhhHHHHHHHHHHhhccccccHHHHHHHHHhHHHHHHHHHHH
Confidence 77762111 01111111111 267877766666665555443311 111 123345555555566666
Q ss_pred HHHH
Q 023355 195 KVTG 198 (283)
Q Consensus 195 ~~s~ 198 (283)
.|..
T Consensus 228 HDgL 231 (303)
T PLN02601 228 HDGL 231 (303)
T ss_pred hhhh
Confidence 6654
No 22
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.75 E-value=5.9 Score=26.94 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=43.9
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCC
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQ 274 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~ 274 (283)
..+.++.+.+.+ .++ ++.+++....+ +.+.+.+.+.++++.+..++.+..+++.++.+++
T Consensus 11 Giv~~vt~~la~-~~~-nI~dl~~~~~~-~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l~ 70 (75)
T cd04870 11 GLTSALTEVLAA-HGV-RILDVGQAVIH-GRLSLGILVQIPDSADSEALLKDLLFKAHELGLQ 70 (75)
T ss_pred CHHHHHHHHHHH-CCC-CEEecccEEEc-CeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCce
Confidence 566666666643 455 67888766665 4677788888887777888999999888887654
No 23
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=81.54 E-value=20 Score=32.80 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=59.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh--------hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 023355 137 NPEDMNYHSVCLHVLADSIRSAGLILASWFLS--------LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAP 206 (283)
Q Consensus 137 ~~~~~~l~a~~~~~~~D~l~s~~vl~~~~~~~--------~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p 206 (283)
-.++..+.+++.|+++|+++-++.+.+.-... +||.-++..++++-+++....+..++.|+....+...+
T Consensus 31 v~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~EA~~R~I~p~~ 108 (404)
T KOG1483|consen 31 VTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIEAIERIIEPHH 108 (404)
T ss_pred ccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 56899999999999999998877777654331 48888999999999999999999999999999888543
No 24
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=80.50 E-value=14 Score=33.42 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=56.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHH--------hhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023355 137 NPEDMNYHSVCLHVLADSIRSAGLILASWFL--------SLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQM 204 (283)
Q Consensus 137 ~~~~~~l~a~~~~~~~D~l~s~~vl~~~~~~--------~~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~ 204 (283)
..+|..+-.++.|.+.|..+-+..+.+.+.. .|||.-+|.+++++-...+-...-.++.+++.-++..
T Consensus 95 ~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~ 170 (379)
T KOG1482|consen 95 KANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSG 170 (379)
T ss_pred eccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcC
Confidence 6789999999999999999999899988876 2578779999887666666666788888888888774
No 25
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=80.24 E-value=9.7 Score=26.01 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=44.4
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecC-----CeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEe
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVP-----GHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~-----~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
+..+.++.+.+.+ .++ +|.+++....+. +.+.+.+.+.++++.+..++.+..+++.++++++ +.+|
T Consensus 10 ~Giv~~it~~l~~-~~~-nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~~~~~-~~~~ 80 (81)
T cd04869 10 PGIVHEVTQFLAQ-RNI-NIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDDLNVD-ISLE 80 (81)
T ss_pred CCHHHHHHHHHHH-cCC-CeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHHHhcce-EEec
Confidence 3566676655543 455 677777766431 4566677777776667788889998888888765 5444
No 26
>PRK11118 putative monooxygenase; Provisional
Probab=77.25 E-value=9.3 Score=27.75 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=42.4
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeEE-EEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHVV-GSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~-~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
+..+++.++|.+.||... ++|..+++.-. ..+++ ++...+++.=.+.-.+.++++|+.++..++
T Consensus 21 ~~~~~LA~sI~~EpGliW----KIWTen~~t~eaGGiYl-F~~e~~a~aYl~mH~aRL~~~Gv~~v~~ki 85 (100)
T PRK11118 21 KALKPLAESINEEPGFIW----KIWTENEKTQEAGGIYL-FEDEASAEAYLEMHTARLKNFGVEEVRAKI 85 (100)
T ss_pred HHHHHHHHHHhcCCCceE----EEeecCCCCcccceEEE-ECCHHHHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 566778888999999854 88987765443 44444 343344444444444567889999888775
No 27
>COG1279 Lysine efflux permease [General function prediction only]
Probab=76.92 E-value=27 Score=28.91 Aligned_cols=78 Identities=9% Similarity=-0.065 Sum_probs=54.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHH
Q 023355 139 EDMNYHSVCLHVLADSIRSAGLILASWFLSLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSK 216 (283)
Q Consensus 139 ~~~~l~a~~~~~~~D~l~s~~vl~~~~~~~~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~ 216 (283)
++..+.....+.++|..--.+-+.|........+++.++.-..=+.++++-++...|+..+.-.+.++.+.++...++
T Consensus 33 r~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~~~~~~~~~~~~~~~~~ 110 (202)
T COG1279 33 REYVLPIALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLYYGLLALKSAPRGPSQLQVAEFTKLKLKK 110 (202)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccccccccccHHH
Confidence 366788889999999765444444433333367889999999999999999999999999853333333444444333
No 28
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=75.46 E-value=12 Score=25.45 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=42.4
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCC
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQ 274 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~ 274 (283)
..+.++.+.+.+. |. ++-+.+...+++ ++...+.+..+++ +..++.+..+++.+++|.+
T Consensus 14 Giv~~v~~~l~~~-g~-ni~d~~~~~~~~-~f~~~~~v~~~~~-~~~~l~~~L~~l~~~~~l~ 72 (76)
T PF13740_consen 14 GIVAAVTGVLAEH-GC-NIEDSRQAVLGG-RFTLIMLVSIPED-SLERLESALEELAEELGLD 72 (76)
T ss_dssp THHHHHHHHHHCT-T--EEEEEEEEEETT-EEEEEEEEEESHH-HHHHHHHHHHHHHHHTT-E
T ss_pred cHHHHHHHHHHHC-CC-cEEEEEEEEEcC-eEEEEEEEEeCcc-cHHHHHHHHHHHHHHCCcE
Confidence 5667777666544 54 788999999865 6777899988855 6677788888877777654
No 29
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=74.83 E-value=16 Score=26.17 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=43.6
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCC-----chhHHHHHHh-hhccCCCCeeEEeec
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVD-----DRPILQFVHG-LYHDLGVQDLTVQID 281 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~-----~~~i~~~i~~-i~~~~~i~~vti~~e 281 (283)
+.++++ .+.+.|++..-+.+.+.+-++ .=.+.+.++..++.. .+++.+++++ +.+..|++ +.|++-
T Consensus 6 P~~Ie~---vl~~~~~~~~~y~i~v~~~~~-~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~lv 77 (96)
T PF14535_consen 6 PSQIEE---VLREFPEVSPEYQIVVTREGG-LDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVELV 77 (96)
T ss_dssp HHHHHH---HHCTSTTEEEEEEEEEEEETT-EEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE
T ss_pred HHHHHH---HHHhCcCCCCcEEEEEEcCCC-CcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEEE
Confidence 455554 456779998678888887554 546788998888653 3567777766 44557876 566543
No 30
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=73.69 E-value=19 Score=23.86 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=37.3
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHh-hhccCCCCeeEEee
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHG-LYHDLGVQDLTVQI 280 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~-i~~~~~i~~vti~~ 280 (283)
+..++..+.+.+.|+|..++ .++|.. -.-+++.+ .+..++.+-+.+ +.+.+|+.++..++
T Consensus 10 ~~~~~~~~~l~~~p~V~~~~-----~vtG~~-d~~~~v~~---~d~~~l~~~i~~~l~~~~gV~~~~t~i 70 (74)
T PF01037_consen 10 DAYDEFAEALAEIPEVVECY-----SVTGEY-DLILKVRA---RDMEELEEFIREKLRSIPGVRRTETSI 70 (74)
T ss_dssp THHHHHHHHHHTSTTEEEEE-----EESSSS-SEEEEEEE---SSHHHHHHHHHHTHHTSTTEEEEEEEE
T ss_pred chHHHHHHHHHcCCCEEEEE-----EEeCCC-CEEEEEEE---CCHHHHHHHHHHHhhcCCCEEEEEEEE
Confidence 34778888899999987653 444433 22445544 356667777766 55557777665543
No 31
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=71.79 E-value=76 Score=28.55 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=57.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh--------hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023355 137 NPEDMNYHSVCLHVLADSIRSAGLILASWFLS--------LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQM 204 (283)
Q Consensus 137 ~~~~~~l~a~~~~~~~D~l~s~~vl~~~~~~~--------~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~ 204 (283)
..++..+.+++.|.+-|-.+.++-+.+.++.. +|+..+...+++.-+++....+.-+.+|++.-|++.
T Consensus 57 ~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~a~fi~~Es~eRl~~p 132 (354)
T KOG1484|consen 57 WSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLIAFFIFSESVERLFDP 132 (354)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence 45889999999999999988888888777662 255668888899999999999999999999999984
No 32
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=70.99 E-value=34 Score=24.16 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=28.7
Q ss_pred HHHH-HHHHHHHHHHHHHhhCCchhHHHH---HHHHHHHHHHHHHHHHH
Q 023355 151 LADS-IRSAGLILASWFLSLGVQNAEVLC---LGIVSVAVFMLVMPLFK 195 (283)
Q Consensus 151 ~~D~-l~s~~vl~~~~~~~~~~~~~D~i~---~i~i~~~i~~~~~~~~~ 195 (283)
..|. .++++.+.+..+...+|. .||+. -++.+...+..+++.+|
T Consensus 35 d~D~~fs~vgLl~g~IL~~~gwR-ldp~ll~~Q~l~~~~~i~f~~e~ir 82 (84)
T PF07444_consen 35 DYDIFFSSVGLLYGLILWFQGWR-LDPILLFGQMLLVGLLIFFGWETIR 82 (84)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4554 466777777776666886 79985 44556666666666554
No 33
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=63.26 E-value=34 Score=28.19 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=49.0
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeec-----CCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELV-----PGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~-----~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
..+.++.+-+ +..++ +|.+++.+..+ +..+.+.+.+.+|++.+..++++..+++.++.++. .++++
T Consensus 107 GIV~~vT~~l-a~~~i-NI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~eL~vd-~~l~~ 177 (190)
T PRK11589 107 HLIERFTALF-DSHHM-NIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTELNAQ-GSINV 177 (190)
T ss_pred CHHHHHHHHH-HHcCC-ChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHHhCce-EEEEE
Confidence 5666666555 44566 78889888654 23677889999999889999999999998887665 55544
No 34
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=62.80 E-value=32 Score=24.99 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=38.4
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeE-EEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHV-VGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~-~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
+...+..++|.+.||... ++|.-+++.- ..-+++ ++...+++.=.+.=...++.+|+++++.++
T Consensus 18 ~~~~~LA~sI~~ePGliw----KiWten~~t~eaGGiYL-Fe~e~~A~aY~~~h~aRl~~~Gv~~i~~ki 82 (97)
T PF08803_consen 18 KAFNDLAESINQEPGLIW----KIWTENEETGEAGGIYL-FEDEASAEAYLEMHTARLAAFGVTEIRGKI 82 (97)
T ss_dssp HHHHHHHHHHTTSTTEEE----EEEEEETTTTEEEEEEE-ESSHHHHHHHHHHHHHHHGGGTSS--EEEE
T ss_pred HHHHHHHHHHhhCCCeEE----EEEEecCCCCccceEEE-ECCHHHHHHHHHHHHHHHHhcCccceEEEE
Confidence 345556678889999864 7787665543 456666 333333443333334467889999998876
No 35
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=60.18 E-value=63 Score=23.39 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=31.7
Q ss_pred cccEEEeecCCeEEEEEEEEEccCCCchhHHHHHH----hhhcc---CCCCeeEEeec
Q 023355 231 SQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVH----GLYHD---LGVQDLTVQID 281 (283)
Q Consensus 231 ~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~----~i~~~---~~i~~vti~~e 281 (283)
..+++..-.++.+.+++++.+..+.+..++.++++ +-.++ ..+..+.|+++
T Consensus 48 ~~v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 48 KGVKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred CCeEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 33455542167778899999998877655555543 32232 34667777765
No 36
>COG4035 Predicted membrane protein [Function unknown]
Probab=55.99 E-value=18 Score=25.86 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=25.9
Q ss_pred hhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 023355 34 AFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLFMS 85 (283)
Q Consensus 34 a~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~~~ 85 (283)
+..++.|..-...++..-.....+| ||+|+|++.+-+.++.+++-+
T Consensus 60 ~~~~v~~~~~~ag~flig~v~gMRP------GYGR~Etv~Gt~LA~l~wL~~ 105 (108)
T COG4035 60 WMRSVPVPLYMAGCFLIGFVLGMRP------GYGRVETVVGTFLAVLLWLYF 105 (108)
T ss_pred cccCCchHHHHHHHHHHHHhhccCC------CCceeehhHHHHHHHHHHHhh
Confidence 3344444444443333333333333 799999999876666665543
No 37
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=55.29 E-value=60 Score=25.99 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhcc--CCCCeeEEeecc
Q 023355 209 IPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHD--LGVQDLTVQIDY 282 (283)
Q Consensus 209 ~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~--~~i~~vti~~e~ 282 (283)
...+.-+++.+.+.+.+|| .+.++--.+ +...+-+.+. ......+++.++|++.+++ +++.+|.|-=+|
T Consensus 72 ~~~~~a~~i~~~v~~~~~V---~~A~vvv~~-~~a~Vav~~~-~~~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~ 142 (177)
T PF09580_consen 72 DRQQLADRIANRVKKVPGV---EDATVVVTD-DNAYVAVDLD-FNRFNTKKIKKKVEKAVKSADPRIYNVYVSTDP 142 (177)
T ss_pred hHHHHHHHHHHHHhcCCCc---eEEEEEEEC-CEEEEEEEec-ccccchhHHHHHHHHHHHHhCCCccEEEEEcCH
Confidence 3445667777777778777 455565544 4545566665 2246678899999885543 456778775554
No 38
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=54.37 E-value=28 Score=25.96 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=35.7
Q ss_pred HHHhhcC--CCCCCChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEE
Q 023355 198 GGILLQM--APPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQ 250 (283)
Q Consensus 198 ~~~Ll~~--~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~ 250 (283)
...|++. +++....+..+.+.+.+.+.|.+.+|.+..+.. .++.+.++.+|.
T Consensus 53 le~lig~~~~~~~~~sEi~r~I~EaL~~d~rI~~V~~f~f~~-~~~~l~v~f~V~ 106 (112)
T PF10934_consen 53 LEDLIGKNYPREYVESEIEREIEEALLQDPRITSVENFSFEW-EGDSLYVSFTVT 106 (112)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEEEEE-ECCEEEEEEEEE
Confidence 4556776 333344455666667788999999999999966 566666666654
No 39
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=52.80 E-value=79 Score=27.80 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=44.3
Q ss_pred CCChhHHHHHHHHh-ccCCCcccc--cccEEEeecCCeEEEEEEEEEccCCC---chhHHHHHHhhhccCCCC----eeE
Q 023355 208 SIPSSALSKCWRQI-VSREDVTEV--SQARFWELVPGHVVGSLSLQVNKGVD---DRPILQFVHGLYHDLGVQ----DLT 277 (283)
Q Consensus 208 ~~~~~~~~~i~~~i-~~~~~v~~v--~~~~~~~~~~~~~~~~i~i~v~~~~~---~~~i~~~i~~i~~~~~i~----~vt 277 (283)
+.|.++.+++++++ ++.|+|.+- ..+++...+++.....+...+++... ..++.+++++.+++.|++ +-+
T Consensus 195 ~~d~~~~~~il~~~~~~~~~vl~~p~p~v~~~~~~dssi~~~v~~wv~~~~~~~~~~~~~~~I~~~f~~~gI~ip~p~~~ 274 (286)
T PRK10334 195 DSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMD 274 (286)
T ss_pred CCCHHHHHHHHHHHHHhCCceecCCCCEEEEEeeeCceEEEEEEEEEecchhHHHHHHHHHHHHHHHHHCCCcCCCCCeE
Confidence 44566677766554 457777542 34667777787777777777765421 235556666655544433 445
Q ss_pred Eeecc
Q 023355 278 VQIDY 282 (283)
Q Consensus 278 i~~e~ 282 (283)
+++++
T Consensus 275 v~~~~ 279 (286)
T PRK10334 275 VNFKR 279 (286)
T ss_pred EEecc
Confidence 55543
No 40
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=50.34 E-value=80 Score=22.90 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 023355 65 GYKRLEVLSAFTNALFLLFM 84 (283)
Q Consensus 65 G~~r~e~l~~~~~~~~l~~~ 84 (283)
||+|.|...+++.++++.+.
T Consensus 78 GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 78 GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred CCCeehhhhhHHHHHHHHHH
Confidence 79999999999888877654
No 41
>PRK00194 hypothetical protein; Validated
Probab=49.41 E-value=46 Score=23.22 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEcc-CCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNK-GVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~-~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
+..+.++.+.+.+ .|+ +|.+++.... ++.....+.+.+++ ..+..++.+..+++.++++++ +.+|.
T Consensus 14 pGiva~vt~~la~-~g~-nI~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~-~~~~~ 80 (90)
T PRK00194 14 VGIIAGVSTVLAE-LNV-NILDISQTIM-DGYFTMIMLVDISESKKDFAELKEELEELGKELGVK-IRIQH 80 (90)
T ss_pred CCHHHHHHHHHHH-cCC-CEEehhhHhh-CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE-EEEEh
Confidence 3566776666543 344 4555555543 44556666777765 345667888888887777766 55554
No 42
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=48.69 E-value=1e+02 Score=25.38 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 023355 151 LADSIRSAGLILASWF 166 (283)
Q Consensus 151 ~~D~l~s~~vl~~~~~ 166 (283)
++|.++...+++|.++
T Consensus 42 Ka~TLGv~LILlgv~l 57 (197)
T PRK12585 42 ISNTFGVSLLLFATVG 57 (197)
T ss_pred cchhhhHHHHHHHHHH
Confidence 3555555555555443
No 43
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=47.24 E-value=1.6e+02 Score=26.13 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=15.0
Q ss_pred ChhHHHHHHHHhccCCCccccc
Q 023355 210 PSSALSKCWRQIVSREDVTEVS 231 (283)
Q Consensus 210 ~~~~~~~i~~~i~~~~~v~~v~ 231 (283)
+.+..+++.+.+++.|||+++.
T Consensus 70 ~~~~~~~v~~~i~~~~gV~~v~ 91 (297)
T COG2177 70 DQDDAALVREKIEGIPGVKSVR 91 (297)
T ss_pred ChHHHHHHHHHHhcCCCcceEE
Confidence 3455556777888888886653
No 44
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=47.11 E-value=2.1e+02 Score=25.39 Aligned_cols=84 Identities=10% Similarity=0.146 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHH------HHhhCCchhHHHHHH
Q 023355 107 LIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAGLILASW------FLSLGVQNAEVLCLG 180 (283)
Q Consensus 107 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~vl~~~~------~~~~~~~~~D~i~~i 180 (283)
+++..++++-+.+....|+..|++ ++ .-........|.+.++-.++-.+ ...+|+.+---.+++
T Consensus 80 ~~~~~li~~PiGv~aaIYL~EYa~--------~~--~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~laGaL 149 (292)
T COG0581 80 ILLAILIGVPLGIGAGIYLAEYAK--------KS--RLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALAGAL 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--------CC--cHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCccHHHHHHH
Confidence 344456677777788888888854 22 23445666778887765554322 223465554445677
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023355 181 IVSVAVFMLVMPLFKVTGGI 200 (283)
Q Consensus 181 ~i~~~i~~~~~~~~~~s~~~ 200 (283)
.++++++..-.+..+|+.+.
T Consensus 150 aLall~LP~iirtteeaL~~ 169 (292)
T COG0581 150 ALALLMLPVVIRTTEEALRA 169 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77777777766666666543
No 45
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=46.88 E-value=95 Score=21.46 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=38.0
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEE
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTV 278 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti 278 (283)
+..+++.+.+.+.||+ +| |... ..+++++.++= .+.+++.+.++++..-.|+-.++.
T Consensus 15 ~~~~~v~~~l~~~~gv-EV---h~~~-~~GKiVVtiE~-----~~~~~~~~~~~~i~~l~GVlsa~l 71 (79)
T PF03927_consen 15 ERLEEVAEALAAIPGV-EV---HAVD-EDGKIVVTIEA-----ESSEEEVDLIDAINALPGVLSASL 71 (79)
T ss_dssp CCHHHHHHHHCCSTTE-EE---EEEE-TTTEEEEEEEE-----SSHHHHHHHHHHHCCSTTEEEEEE
T ss_pred hhHHHHHHHHHcCCCc-EE---EeeC-CCCeEEEEEEe-----CChHHHHHHHHHHHcCCCceEEEE
Confidence 5677788889889987 34 4444 33676654443 566778888888766677765554
No 46
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.70 E-value=58 Score=22.67 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=42.5
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEcc-CCCchhHHHHHHhhhccCCCCeeEEe
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNK-GVDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~-~~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
+..+.++.+.+.+ .|+ ++-+++.... ++.+.+.+.+..++ +.+..++.+..+++.++++++ +.++
T Consensus 12 pGiva~vt~~la~-~g~-nI~~~~~~~~-~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~-~~i~ 77 (88)
T cd04872 12 VGIVAGVSTKLAE-LNV-NILDISQTIM-DGYFTMIMIVDISESNLDFAELQEELEELGKELGVK-IRIQ 77 (88)
T ss_pred CCHHHHHHHHHHH-cCC-CEEechhHhh-CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE-EEEE
Confidence 3667777666644 344 4555555554 45667788888775 456788888888888787755 4444
No 47
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=44.21 E-value=2e+02 Score=24.41 Aligned_cols=65 Identities=6% Similarity=-0.084 Sum_probs=37.9
Q ss_pred HHHHHHhccCCCcccccccEEEeec-CCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEeecc
Q 023355 215 SKCWRQIVSREDVTEVSQARFWELV-PGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQIDY 282 (283)
Q Consensus 215 ~~i~~~i~~~~~v~~v~~~~~~~~~-~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~e~ 282 (283)
+.+.+.++ ..+. .+++++..+.. +++..+++++..+.. +.+++.+.+.++..++++.++.=+.++
T Consensus 159 ~~L~~~l~-~~~~-~~~~l~~~~~~~~~~~ei~a~l~~~~~-~~~~le~iv~~L~~~pgV~~v~W~~~~ 224 (225)
T PRK15385 159 QWLLNIVK-EAAI-CLQGLGSVPAQEQGYKEIRAELVGHAD-YRKTRELIISRIGDNDNITAIHWSIDS 224 (225)
T ss_pred HHHHHHHH-hCCC-ceEEeEeeecCCCCeEEEEEEEEecCC-chhhHHHHHHHHhCCCCeEEEEEEecC
Confidence 33334443 3344 57888887653 444444555544432 345555666677778899988877654
No 48
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=43.49 E-value=1.5e+02 Score=29.45 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHH-hhCCchhHHHH-HHHHHHHHHHHHHHHHHHH
Q 023355 156 RSAGLILASWFL-SLGVQNAEVLC-LGIVSVAVFMLVMPLFKVT 197 (283)
Q Consensus 156 ~s~~vl~~~~~~-~~~~~~~D~i~-~i~i~~~i~~~~~~~~~~s 197 (283)
.+++.+.++... |.+|..+..+- ..+++...+..|-+.+++-
T Consensus 589 ~~l~ai~glf~~Yw~~l~lFqTL~~~~~lg~~t~~~G~r~L~~~ 632 (636)
T PF05817_consen 589 GGLGAIEGLFFLYWLGLNLFQTLPYLAVLGAVTFLSGNRALREL 632 (636)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345555555544 35888777766 5567777888888877764
No 49
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=41.27 E-value=1.1e+02 Score=20.38 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=21.9
Q ss_pred EeecCCeEEEEEEEEEc-cC-CCchhHHHHHHhhhcc-CCCCeeEE
Q 023355 236 WELVPGHVVGSLSLQVN-KG-VDDRPILQFVHGLYHD-LGVQDLTV 278 (283)
Q Consensus 236 ~~~~~~~~~~~i~i~v~-~~-~~~~~i~~~i~~i~~~-~~i~~vti 278 (283)
-.+.+++. .+.+.++ |. ...+.+.+++++.++. .|++.+.|
T Consensus 29 i~i~~~~V--~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 29 ISIEGGKV--SVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEECTCEE--EEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEECCEE--EEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 33444454 4445444 23 3356788888885554 57777765
No 50
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=40.93 E-value=35 Score=29.31 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=30.9
Q ss_pred cccccEEEeecCCeEEEEEEEEEccCCCc--hhHHHHHHhhhccCCCCeeEEeecc
Q 023355 229 EVSQARFWELVPGHVVGSLSLQVNKGVDD--RPILQFVHGLYHDLGVQDLTVQIDY 282 (283)
Q Consensus 229 ~v~~~~~~~~~~~~~~~~i~i~v~~~~~~--~~i~~~i~~i~~~~~i~~vti~~e~ 282 (283)
...++|+|.-+ . .+.|+++++.-. -+-.+.+.+.+++.|..+||+..+.
T Consensus 198 g~~~~rvr~~~--~---~a~ie~~~~~~~~~~~~~~~i~~~~~~~gf~~v~ldl~g 248 (252)
T TIGR00268 198 GVGQVRVRNYD--N---LAVIEVPEDELSKLLNEAEEVRDKFKDIGFRKVLIDLEG 248 (252)
T ss_pred CCCeEEEEecC--C---eEEEEECHHHHHHHHhhHHHHHHHHHHcCCCeEEEccCC
Confidence 45778999843 3 335666664211 1114566666788999999987653
No 51
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.91 E-value=74 Score=20.95 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=32.8
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhh
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGL 267 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i 267 (283)
..+.++.+.+.+. ++ ++.++.......+.....+.++++.....+++.+.++++
T Consensus 11 g~L~~i~~~i~~~-~~-nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~L~~i 64 (74)
T cd04887 11 GMLGRVTTAIGEA-GG-DIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAAVRAL 64 (74)
T ss_pred chHHHHHHHHHHc-CC-cEEEEEEEEecCCEEEEEEEEEcCCHHHHHHHHHHHhcC
Confidence 5677777777543 44 566666666445566667777766555555555555443
No 52
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=40.73 E-value=1.1e+02 Score=20.57 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=38.0
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeec-CCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCee
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELV-PGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDL 276 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~-~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~v 276 (283)
..+.++.+.+... ++ ++.+++..... ++...+.+.++++. ..++.+-++++.+-.|+.+|
T Consensus 18 GlL~dI~~~i~~~-~~-nI~~i~~~~~~~~~~~~~~l~v~V~d---~~~L~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 18 GLLADITSVISEN-GV-NIRSINARTNKDDGTARITLTVEVKD---LEHLNQIIRKLRQIPGVISV 78 (80)
T ss_dssp THHHHHHHHHHCS-SS-EEEEEEEEE--ETTEEEEEEEEEESS---HHHHHHHHHHHCTSTTEEEE
T ss_pred CHHHHHHHHHHHC-CC-CeEEEEeEEeccCCEEEEEEEEEECC---HHHHHHHHHHHHCCCCeeEE
Confidence 5677887777554 55 78888988863 66777888888864 34444444455444555443
No 53
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=40.22 E-value=97 Score=21.66 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=27.2
Q ss_pred EEEEEEccCCCchhHHHHHHhhhccCCCCeeEEeecc
Q 023355 246 SLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQIDY 282 (283)
Q Consensus 246 ~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~e~ 282 (283)
.+-|+++++.+..++.+++.+.++-+ -+++++...+
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~-~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELP-AEHITLSYKS 47 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC-chhcEEEecc
Confidence 67889999999999999998766654 2556665543
No 54
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=39.95 E-value=2e+02 Score=23.35 Aligned_cols=37 Identities=8% Similarity=0.166 Sum_probs=22.9
Q ss_pred EEEEEEccC-C-CchhHHHHHHhhhcc-CCCCeeEEeecc
Q 023355 246 SLSLQVNKG-V-DDRPILQFVHGLYHD-LGVQDLTVQIDY 282 (283)
Q Consensus 246 ~i~i~v~~~-~-~~~~i~~~i~~i~~~-~~i~~vti~~e~ 282 (283)
.+.+.++.. . -...+.+.+++.++. .+++.+.|++..
T Consensus 116 ~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~~ 155 (174)
T TIGR03406 116 DIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELVF 155 (174)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEEe
Confidence 445554432 2 346677888775554 688888777654
No 55
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=38.75 E-value=1.1e+02 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=18.0
Q ss_pred CchhHHHHHHhhhccCCCCeeEEeec
Q 023355 256 DDRPILQFVHGLYHDLGVQDLTVQID 281 (283)
Q Consensus 256 ~~~~i~~~i~~i~~~~~i~~vti~~e 281 (283)
-.+.+.+.+++.+++.|++.+.|++.
T Consensus 40 a~e~L~~~I~~aL~~~Gv~~V~V~i~ 65 (146)
T TIGR02159 40 ALEVIRQDIRDAVRALGVEVVEVSTS 65 (146)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEeEe
Confidence 34677888887665568887777654
No 56
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=38.71 E-value=1.4e+02 Score=21.20 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=22.6
Q ss_pred EEEEEEc--cCCCchhHHHHHHhhhcc-CCCCeeEEeec
Q 023355 246 SLSLQVN--KGVDDRPILQFVHGLYHD-LGVQDLTVQID 281 (283)
Q Consensus 246 ~i~i~v~--~~~~~~~i~~~i~~i~~~-~~i~~vti~~e 281 (283)
.+.+.++ .....+.+.+.+++.+++ .|++.+.|.+.
T Consensus 40 ~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 40 DIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred EEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 4444443 223456678888876555 68887877764
No 57
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=38.04 E-value=2.9e+02 Score=24.53 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=19.8
Q ss_pred CCCChhHHHHHHHHhccCCCccccc
Q 023355 207 PSIPSSALSKCWRQIVSREDVTEVS 231 (283)
Q Consensus 207 ~~~~~~~~~~i~~~i~~~~~v~~v~ 231 (283)
++.++++.+++.+.+++.|+|.+++
T Consensus 74 ~~~~~~~~~~l~~~l~~~~~V~~v~ 98 (309)
T TIGR00439 74 KALAQSDADTVVSLLTRDKGVENIN 98 (309)
T ss_pred CCCCHHHHHHHHHHHhCCCCccEEE
Confidence 3567788888888999999987754
No 58
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=37.19 E-value=98 Score=32.52 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=30.5
Q ss_pred cCCCCCCChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCc----hhHHHHHHhhhcc
Q 023355 203 QMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDD----RPILQFVHGLYHD 270 (283)
Q Consensus 203 ~~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~----~~i~~~i~~i~~~ 270 (283)
+.+|...+.+..+++.+.+.+.+|| .+++.... .+. ..++++++.+.+. +++++++.++..+
T Consensus 53 Gas~~~ve~~vt~piE~~l~~i~gv---~~i~S~s~-~G~--s~i~l~f~~~~d~~~a~~~v~~~v~~~~~~ 118 (1025)
T PRK10614 53 GASPETMASSVATPLERSLGRIAGV---NEMTSSSS-LGS--TRIILQFDFDRDINGAARDVQAAINAAQSL 118 (1025)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCc---eEEEEEec-CCe--EEEEEEEECCCChHHHHHHHHHHHHHHHhh
Confidence 3444333333334444555555555 55555553 333 3556666665543 4566666555443
No 59
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=36.32 E-value=1.5e+02 Score=29.90 Aligned_cols=49 Identities=16% Similarity=-0.014 Sum_probs=30.5
Q ss_pred cEEEeecCCeEEEEEEEEEccCCC---chhHHHHHHhhhccCCCC--eeEEeec
Q 023355 233 ARFWELVPGHVVGSLSLQVNKGVD---DRPILQFVHGLYHDLGVQ--DLTVQID 281 (283)
Q Consensus 233 ~~~~~~~~~~~~~~i~i~v~~~~~---~~~i~~~i~~i~~~~~i~--~vti~~e 281 (283)
..+..++++...+.+.+.++|+.. ..++.+++++.+++.||+ +-++|+.
T Consensus 670 vgV~~lgdSsi~lrvr~~t~p~~qw~v~rel~~~IK~~Fde~GIeIP~~tv~v~ 723 (741)
T PRK11465 670 AGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLAGVRAPVQTYQVL 723 (741)
T ss_pred EEEEEecCceEEEEEEEEECcchHHHHHHHHHHHHHHHHHHCCCCCCCCceEee
Confidence 456677777777777777776543 246667777766665543 4555543
No 60
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=35.55 E-value=42 Score=20.85 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHHHHHHH
Q 023355 172 QNAEVLCLGIVSVAVFML 189 (283)
Q Consensus 172 ~~~D~i~~i~i~~~i~~~ 189 (283)
.++||+.++++++.-.+.
T Consensus 5 r~lDP~~av~iG~~ayyl 22 (47)
T PF11654_consen 5 RFLDPLFAVFIGTSAYYL 22 (47)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 469999999888765443
No 61
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=34.26 E-value=1.8e+02 Score=22.67 Aligned_cols=59 Identities=7% Similarity=-0.031 Sum_probs=32.0
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHh-hhccCCCCeeEEe
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHG-LYHDLGVQDLTVQ 279 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~-i~~~~~i~~vti~ 279 (283)
+..++..+.+.+.|+|..++.. . |+.. +.+++..+ +.+++.+.+.+ +.+-.|+.++..+
T Consensus 81 ~~~~~~~~~l~~~p~V~~~~~~---t-G~~d--l~~~v~~~---d~~~l~~~~~~~l~~~~gV~~~~t~ 140 (153)
T PRK11179 81 KDYPSALAKLESLDEVVEAYYT---T-GHYS--IFIKVMCR---SIDALQHVLINKIQTIDEIQSTETL 140 (153)
T ss_pred ccHHHHHHHHhCCCCEEEEEEc---c-cCCC--EEEEEEEC---CHHHHHHHHHHHhhcCCCeeeEEEE
Confidence 3456777788889998765422 1 3333 34444433 44455555433 4444677655443
No 62
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=33.55 E-value=1.7e+02 Score=20.47 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhh
Q 023355 209 IPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGL 267 (283)
Q Consensus 209 ~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i 267 (283)
..++.++++++-.. ..|. .+..++--...... .+++++.|+.+.+.+.+..+++++
T Consensus 12 ~~pe~leRVLrvtr-hRGF-~vcamnmt~~~da~-~~nie~tV~s~R~~~lL~~QLeKl 67 (86)
T COG3978 12 FNPETLERVLRVTR-HRGF-RVCAMNMTAAVDAG-NANIELTVDSDRSVDLLTSQLEKL 67 (86)
T ss_pred CChHHHHHHHHHhh-hcCe-EEEEeecccccccc-cceEEEEEcCCCChHHHHHHHHHH
Confidence 34578888876653 3455 34555544433333 347788888888888888887776
No 63
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=33.39 E-value=2.2e+02 Score=22.43 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHh-hhccCCCCeeEEe
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHG-LYHDLGVQDLTVQ 279 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~-i~~~~~i~~vti~ 279 (283)
++..++..+.+.+.|+|..++. ..|+..+ -+++.++ +..++.+.+.+ +.+..|+.++..+
T Consensus 87 ~~~~~~~~~~l~~~p~V~~~~~----vtG~~d~--~l~v~~~---~~~~l~~~l~~~l~~~~gV~~~~t~ 147 (164)
T PRK11169 87 PDVFEQFNAAVQKLEEIQECHL----VSGDFDY--LLKTRVP---DMSAYRKLLGETLLRLPGVNDTRTY 147 (164)
T ss_pred hHHHHHHHHHHhcCcceeeeee----ecCCCCE--EEEEEEC---CHHHHHHHHHHHhhcCCCeeeEEEE
Confidence 3556777778888899876652 2233333 4444433 33455555533 4444666655543
No 64
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=33.39 E-value=2e+02 Score=22.91 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=39.5
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCC---CchhHHHHHHhh-hc-cCCCCeeEEeeccC
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGV---DDRPILQFVHGL-YH-DLGVQDLTVQIDYD 283 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~---~~~~i~~~i~~i-~~-~~~i~~vti~~e~~ 283 (283)
+.-+++.+.+.+.|+| .+..+--.|. ..++-+ .++++. ..+++.+++++- .+ .+.+.+|.|-=+||
T Consensus 54 ~~A~~Ia~~v~~v~~V---~dA~vvVtg~-~A~Vgv--~~~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd 124 (158)
T TIGR02898 54 DVADEIASEAAKVKGV---KDATVVITGN-YAYVGV--DLTNGLEGSVTDELKEKVAETVKSTDNRIANVYVSADPD 124 (158)
T ss_pred HHHHHHHHHHhcCCCC---ceEEEEEECC-EEEEEE--EcCCCcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHH
Confidence 4556666666777776 5566666554 333233 333332 256788888764 44 46678888876654
No 65
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=33.08 E-value=1.8e+02 Score=25.59 Aligned_cols=66 Identities=8% Similarity=0.178 Sum_probs=44.2
Q ss_pred hHHHHHHHHhccCCCcccccccEEE-eecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFW-ELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~-~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
..+.++.+.+. ..++ +|.+++.. +.+++.+.+.+.+..+++.+..++.+..+++.++.+++ +.+|.
T Consensus 19 GIVa~VT~~La-~~~v-NI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~l~-i~i~~ 85 (286)
T PRK13011 19 GIVAAVTGFLA-EHGC-YITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFGMQ-WELHD 85 (286)
T ss_pred CHHHHHHHHHH-hCCC-CEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhCcE-EEEee
Confidence 56666665553 3455 67777776 23555666666776676677888888888888877665 66653
No 66
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=32.98 E-value=1.6e+02 Score=19.93 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=40.4
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEE
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTV 278 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti 278 (283)
..+.++.+.+.. .|. ++-+.+....+ +.+..-+.+..+ ..+..++.+..+.+.++++++ +.+
T Consensus 13 GiVa~vs~~la~-~g~-nI~d~~q~~~~-~~F~m~~~~~~~-~~~~~~l~~~l~~~~~~~~l~-i~v 74 (77)
T cd04893 13 GILNELTRAVSE-SGC-NILDSRMAILG-TEFALTMLVEGS-WDAIAKLEAALPGLARRLDLT-LMM 74 (77)
T ss_pred hHHHHHHHHHHH-cCC-CEEEceeeEEc-CEEEEEEEEEec-cccHHHHHHHHHHHHHHcCCE-EEE
Confidence 567777666644 344 56777777755 466667777766 345677778888877777765 444
No 67
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=32.62 E-value=1.7e+02 Score=22.68 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 023355 6 LLISLNVAYSTAELAIGLF 24 (283)
Q Consensus 6 ~~l~~~~~~~~~~l~~~~~ 24 (283)
+++++|++++++-..++.+
T Consensus 79 ls~v~Nilvsv~~~~~~~~ 97 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGW 97 (142)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444
No 68
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=32.27 E-value=84 Score=23.86 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=31.8
Q ss_pred EEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEe
Q 023355 234 RFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 234 ~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
.+|..+++.-+-.++.+..+.+..+++.+-+++..++|++.++.+.
T Consensus 24 ~VR~~~~~~~v~~L~ye~y~~ma~~~l~~I~~e~~~k~~~~~v~v~ 69 (124)
T cd00756 24 TVRDHDEGKGVEALEYEAYPPMAEKELEEIAEEARERWGLLRVAII 69 (124)
T ss_pred EECCCCCCCcEeEEEEEECchHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 3444444555668888777766667777777778888888877664
No 69
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.95 E-value=1.5e+02 Score=19.38 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=22.4
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEcc
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNK 253 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~ 253 (283)
+..+.+..+.+.+ +. +|.+++-++.+.+...+.+.++++.
T Consensus 9 PG~l~~~~~~i~~--~~-nI~~~~~~~~~~~~~~v~v~ie~~~ 48 (68)
T cd04885 9 PGALKKFLELLGP--PR-NITEFHYRNQGGDEARVLVGIQVPD 48 (68)
T ss_pred CCHHHHHHHHhCC--CC-cEEEEEEEcCCCCceEEEEEEEeCC
Confidence 3667888887754 22 4455555554444444555565553
No 70
>PRK00523 hypothetical protein; Provisional
Probab=31.93 E-value=1.7e+02 Score=19.99 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCC
Q 023355 190 VMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSRED 226 (283)
Q Consensus 190 ~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~ 226 (283)
++-..|....--+..+|| ++++.++......-+-|.
T Consensus 22 Gffiark~~~k~l~~NPp-ine~mir~M~~QMGqKPS 57 (72)
T PRK00523 22 GYFVSKKMFKKQIRENPP-ITENMIRAMYMQMGRKPS 57 (72)
T ss_pred HHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHhCCCcc
Confidence 344455556666666775 677777777665544443
No 71
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=31.78 E-value=1.7e+02 Score=27.63 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=46.4
Q ss_pred CCCCCChhHHHHHHHHhccCC-Cccccc-----------ccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCC
Q 023355 205 APPSIPSSALSKCWRQIVSRE-DVTEVS-----------QARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLG 272 (283)
Q Consensus 205 ~p~~~~~~~~~~i~~~i~~~~-~v~~v~-----------~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~ 272 (283)
.|...+.+..+.+.+.++..+ ||...+ ++-.-+.+++...+.+.++.+++.+.+++.+.+++.++.++
T Consensus 302 ~~~~~d~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~t~n~g~i~~~~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~~~~ 381 (477)
T TIGR01893 302 SVKVFSENTTDKLINALNGLPNGVQSVSDEEPGLVESSLNLGVVKTKENKVIFTFLIRSSVESDKDYVTEKIESIAKLAG 381 (477)
T ss_pred cccccCHHHHHHHHHHHHHCCccceeeccCCCCeEEeeeeEEEEEEcCCEEEEEEEeCCCCchhHHHHHHHHHHHhhhcC
Confidence 455566666666666665443 443331 22334456778888999999999999999999988777655
Q ss_pred C
Q 023355 273 V 273 (283)
Q Consensus 273 i 273 (283)
+
T Consensus 382 ~ 382 (477)
T TIGR01893 382 A 382 (477)
T ss_pred e
Confidence 4
No 72
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=31.47 E-value=1.9e+02 Score=20.48 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=39.0
Q ss_pred ChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEe
Q 023355 210 PSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 210 ~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
.++.+.++.+.+.+.||+ +| |...-..+++++.++ ..+.+++.+.++++..-.|+-.++.-
T Consensus 15 ~Pe~~~~V~~~l~~ipg~-Ev---h~~d~~~GKiVVtiE-----~~~~~~~~~~i~~I~~l~GVlsa~lV 75 (87)
T PRK10553 15 KSERISDISTQLNAFPGC-EV---AVSDAPSGQLIVVVE-----AEDSETLLQTIESVRNVEGVLAVSLV 75 (87)
T ss_pred ChHHHHHHHHHHHcCCCc-EE---EeecCCCCeEEEEEE-----eCChHHHHHHHHHHHcCCCceEEEEE
Confidence 346777888888888886 34 444322356554443 35677788888887776777655543
No 73
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=29.88 E-value=2.9e+02 Score=22.06 Aligned_cols=66 Identities=9% Similarity=-0.137 Sum_probs=47.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023355 138 PEDMNYHSVCLHVLADSIRSAGLILASWFLSLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQ 203 (283)
Q Consensus 138 ~~~~~l~a~~~~~~~D~l~s~~vl~~~~~~~~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~ 203 (283)
.....+....=+...|.+-...+..+........++.-....++-+.++++.+++.+++..+...+
T Consensus 22 G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~ 87 (191)
T PF01810_consen 22 GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSKSS 87 (191)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcchh
Confidence 344566677777788877766666555433334677888889999999999999999877665443
No 74
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=29.83 E-value=3.5e+02 Score=23.06 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-H-hhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023355 146 VCLHVLADSIRSAGLILASWF-L-SLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILL 202 (283)
Q Consensus 146 ~~~~~~~D~l~s~~vl~~~~~-~-~~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll 202 (283)
.......|.+.++-.++-..+ . .+|..+...+ +.+++.-.....+.+|+....+.
T Consensus 95 ~~~~~~~~~~~~iP~l~l~l~l~~~~g~g~~~~i--l~l~l~~~~~~~r~~r~~~~~~~ 151 (258)
T TIGR02790 95 EAIMRVCDVFLSFPTIILSLAIVGILGPGLENVI--IAIVLVHWAWYARMVRGMVVSLK 151 (258)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567788777665543322 2 3454332222 22222222334566666555543
No 75
>COG4756 Predicted cation transporter [General function prediction only]
Probab=29.83 E-value=3.8e+02 Score=23.41 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 023355 69 LEVLSAFTNALFLLFMSFSLAVEALHAFIQDESEHKHYLIVSAVTNLLVNLIGVWFFR 126 (283)
Q Consensus 69 ~e~l~~~~~~~~l~~~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~ 126 (283)
+|..+-...-.-....+++-..--++.+.+|.....-....+++...++...+.++..
T Consensus 39 LE~FFliMgv~gvt~~glws~~L~ieAl~tPvai~~vg~IPiGI~QvVl~~GLvfy~~ 96 (367)
T COG4756 39 LELFFLIMGVAGVTLEGLWSWHLLIEALLTPVAIYQVGYIPIGITQVVLAAGLVFYAL 96 (367)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeEeeecccchhHHHHHHHHHHHHHHH
Confidence 5544433222223333444333345555567553322223334444444444444433
No 76
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=29.23 E-value=3.3e+02 Score=22.47 Aligned_cols=16 Identities=6% Similarity=0.339 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhc
Q 023355 113 TNLLVNLIGVWFFRNY 128 (283)
Q Consensus 113 ~~l~v~~~~~~~~~~~ 128 (283)
++.+.-.+-+++.+|+
T Consensus 186 ig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 186 IGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444554
No 77
>PRK09577 multidrug efflux protein; Reviewed
Probab=29.02 E-value=1.7e+02 Score=30.74 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=31.0
Q ss_pred CCCCCCChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCc----hhHHHHHHhhhcc
Q 023355 204 MAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDD----RPILQFVHGLYHD 270 (283)
Q Consensus 204 ~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~----~~i~~~i~~i~~~ 270 (283)
++|...+.+..+.+.+.+.+.+| +++++.....+ ...+.++++.+.+. .++++++.++..+
T Consensus 52 asp~~VE~~Vt~plE~~L~~v~g---v~~i~S~S~~G---~s~I~v~f~~g~d~~~a~~~V~~~v~~~~~~ 116 (1032)
T PRK09577 52 ASAQVVEESVTALIEREMNGAPG---LLYTSATSSAG---QASLSLTFKQGVNADLAAVEVQNRLKTVEAR 116 (1032)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCC---ceEEEEEecCC---eEEEEEEEECCCChHHHHHHHHHHHHHHHHh
Confidence 33333333333344444444444 45556665333 34677777776554 4566666655433
No 78
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=28.46 E-value=3.6e+02 Score=22.72 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=14.0
Q ss_pred CCchhHHHHHHHHHHHHHH
Q 023355 139 EDMNYHSVCLHVLADSIRS 157 (283)
Q Consensus 139 ~~~~l~a~~~~~~~D~l~s 157 (283)
...-..+...|.+.|....
T Consensus 188 ~~~l~~AIllHaliD~~aa 206 (223)
T PF10086_consen 188 KWYLVLAILLHALIDFPAA 206 (223)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4456678889999998643
No 79
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=28.34 E-value=51 Score=22.06 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=20.7
Q ss_pred CChhHHHHHHHHhccCCCcccccccE
Q 023355 209 IPSSALSKCWRQIVSREDVTEVSQAR 234 (283)
Q Consensus 209 ~~~~~~~~i~~~i~~~~~v~~v~~~~ 234 (283)
.+.++++++++.+.+.+||.+|...+
T Consensus 46 ~~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 46 IEFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEee
Confidence 35678899999999999998876443
No 80
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=27.88 E-value=29 Score=25.04 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.7
Q ss_pred CCCCCCCCchhHH
Q 023355 58 PDFAYTYGYKRLE 70 (283)
Q Consensus 58 ~d~~~~~G~~r~e 70 (283)
.|++||+|+.|--
T Consensus 4 D~~~fPrGF~RsG 16 (93)
T PF04219_consen 4 DDKNFPRGFSRSG 16 (93)
T ss_pred cCCCCCCccccCC
Confidence 4789999999963
No 81
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=27.59 E-value=52 Score=34.61 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=23.5
Q ss_pred CCCcccccccEEEeecCCeEEEEEEEEEccCCCc----hhHHHHHHhhhcc
Q 023355 224 REDVTEVSQARFWELVPGHVVGSLSLQVNKGVDD----RPILQFVHGLYHD 270 (283)
Q Consensus 224 ~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~----~~i~~~i~~i~~~ 270 (283)
..++.++++++......+. ..+.++++.+.+. +++++++.++..+
T Consensus 69 l~~v~gi~~i~S~S~~~G~--s~I~v~f~~g~d~~~a~~~V~~~i~~~~~~ 117 (1049)
T PRK15127 69 MNGIDNLMYMSSNSDSTGT--VQITLTFESGTDADIAQVQVQNKLQLAMPL 117 (1049)
T ss_pred hcCCCCceEEEEEecCCce--EEEEEEEECCCChHHHHHHHHHHHHHHHhh
Confidence 3455555666666531223 3556666665544 4566666655433
No 82
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=26.99 E-value=4.7e+02 Score=23.51 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=33.2
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 023355 169 LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPP 207 (283)
Q Consensus 169 ~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~ 207 (283)
.+.|++-++.+++++.++.+.++.+.-.-.+.++.-.++
T Consensus 105 ~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~~~ 143 (356)
T COG4956 105 LPIPFISTIIPVILTIILAYFGFQLADKKRDEFLRLLNP 143 (356)
T ss_pred CCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhcch
Confidence 378899999999999999999999988888887776554
No 83
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=26.18 E-value=99 Score=32.58 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=24.1
Q ss_pred CCCcccccccEEEeecCCeEEEEEEEEEccCCCc----hhHHHHHHhhhcc
Q 023355 224 REDVTEVSQARFWELVPGHVVGSLSLQVNKGVDD----RPILQFVHGLYHD 270 (283)
Q Consensus 224 ~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~----~~i~~~i~~i~~~ 270 (283)
..++.++++++..... +. ..+.++++.+.+. +++++++.++..+
T Consensus 80 l~~v~gv~~i~S~S~~-G~--s~i~v~f~~g~d~~~a~~ev~~~i~~~~~~ 127 (1040)
T PRK10503 80 FGQMSGLKQMSSQSSG-GA--SVITLQFQLTLPLDVAEQEVQAAINAATNL 127 (1040)
T ss_pred hcCCCCccEEEEEecC-Ce--EEEEEEEECCCChHHHHHHHHHHHHHHHHh
Confidence 3455555767777643 33 3555556665543 5566666555443
No 84
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=26.14 E-value=1.4e+02 Score=19.44 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=18.7
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023355 56 QKPDFAYTYGYKRLEVLSAFTNALFLLFMSFSLAVEALH 94 (283)
Q Consensus 56 ~~~d~~~~~G~~r~e~l~~~~~~~~l~~~~~~i~~~ai~ 94 (283)
+++.++||-|-+-+ ++|++.++...+.+-|+
T Consensus 29 ~~~e~kypvgPwLl--------glFvFVVcGSa~FqIIr 59 (65)
T KOG3491|consen 29 TKKEKKYPVGPWLL--------GLFVFVVCGSALFQIIR 59 (65)
T ss_pred cCccccCCcchHHH--------HHHHHHhhcHHHHHHHH
Confidence 46778999886643 45555555555555444
No 85
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=26.09 E-value=3.4e+02 Score=25.67 Aligned_cols=85 Identities=13% Similarity=-0.037 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCCcc--cccccEEEeecCCeEEEEEEEEEccCCCchhHHHHH
Q 023355 187 FMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVT--EVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFV 264 (283)
Q Consensus 187 ~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~--~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i 264 (283)
+..+++..|+.++.|-+.+--.+.++.+.++++..++.+|+. .+. .-||....+ -+ +..+. ++.+.+
T Consensus 357 i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vp-----GAGGgDa~~--~l-~~~~~---~~~~~~ 425 (454)
T TIGR01219 357 AREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVP-----GAGGFDAIF--AI-TLGDV---DSGTKL 425 (454)
T ss_pred HHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecC-----CCCccceEE--EE-ecCCh---HHHHHH
Confidence 567788888888888887767788899999999988888873 232 334444332 22 22222 244455
Q ss_pred HhhhccCCCCeeEEeecc
Q 023355 265 HGLYHDLGVQDLTVQIDY 282 (283)
Q Consensus 265 ~~i~~~~~i~~vti~~e~ 282 (283)
++-.++.+|.-..++.++
T Consensus 426 ~~~W~~~~V~pL~v~~~~ 443 (454)
T TIGR01219 426 TQAWSSHNVLALDVREAP 443 (454)
T ss_pred HHHHhhCCEEEEeccccC
Confidence 444455666666666654
No 86
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.05 E-value=2e+02 Score=18.98 Aligned_cols=59 Identities=2% Similarity=0.017 Sum_probs=37.1
Q ss_pred hHHHHHHHHhccCCCcccccccEEEe-ecCCeEEEEEEEEEccC-CCchhHHHHHHhhhccCC
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWE-LVPGHVVGSLSLQVNKG-VDDRPILQFVHGLYHDLG 272 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~-~~~~~~~~~i~i~v~~~-~~~~~i~~~i~~i~~~~~ 272 (283)
..+.++.+.+.+ .|+ ++-+++... -+++.+.+.+.+..++. .+..++.+..+++.++++
T Consensus 11 Giv~~it~~l~~-~g~-nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 71 (74)
T cd04875 11 GIVAAVSGFLAE-HGG-NIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFD 71 (74)
T ss_pred CHHHHHHHHHHH-cCC-CEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 567777766644 344 566666653 13455666677766654 567788888887766654
No 87
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=25.16 E-value=4.3e+02 Score=27.90 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCCcccccccEEEeecCCeEEEEEEEEEccCCC----chhHHHHHHhhhccC--CCCeeEEe
Q 023355 224 REDVTEVSQARFWELVPGHVVGSLSLQVNKGVD----DRPILQFVHGLYHDL--GVQDLTVQ 279 (283)
Q Consensus 224 ~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~----~~~i~~~i~~i~~~~--~i~~vti~ 279 (283)
..++.++..+...... +.. .+.++++.+.+ ..++++++.+...++ +++...+.
T Consensus 70 l~~i~gi~~i~S~S~~-G~s--~itv~F~~~~d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~ 128 (1009)
T COG0841 70 LNGLDGLDYMSSTSSS-GSS--SITVTFELGTDPDTAAVQVQNKIQQAESRLPSGVQQPGVT 128 (1009)
T ss_pred HhcCCCccEEEEEEcC-CcE--EEEEEEeCCCChHHHHHHHHHHHHHHHhcCCCccCCCceE
Confidence 4566666767777744 333 44555555444 347777777665432 34444443
No 88
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=24.77 E-value=31 Score=36.23 Aligned_cols=62 Identities=8% Similarity=0.146 Sum_probs=30.1
Q ss_pred CCCCCCChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCc----hhHHHHHHhhhcc
Q 023355 204 MAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDD----RPILQFVHGLYHD 270 (283)
Q Consensus 204 ~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~----~~i~~~i~~i~~~ 270 (283)
++|...+.+..+++.+++.+.+| +++++......+. ..+.++++++.+. +++++++.++..+
T Consensus 52 asp~~vE~~Vt~plE~~l~~v~g---v~~i~S~S~~~G~--s~i~v~f~~g~d~~~a~~~V~~~v~~~~~~ 117 (1037)
T PRK10555 52 ASAQTLENTVTQVIEQNMTGLDN---LMYMSSQSSGTGQ--ASVTLSFKAGTDPDEAVQQVQNQLQSAMRK 117 (1037)
T ss_pred CCHHHHHHHHhHHHHHHhcCCCC---ceEEEEEecCCCe--EEEEEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence 33433333334444444544444 4555555531233 3556666666554 4555555554433
No 89
>PRK09579 multidrug efflux protein; Reviewed
Probab=24.45 E-value=1.1e+02 Score=32.15 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=24.9
Q ss_pred CCCcccccccEEEeecCCeEEEEEEEEEccCCCc----hhHHHHHHhhhcc
Q 023355 224 REDVTEVSQARFWELVPGHVVGSLSLQVNKGVDD----RPILQFVHGLYHD 270 (283)
Q Consensus 224 ~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~----~~i~~~i~~i~~~ 270 (283)
..++.++++++.....+ ...+.++++.+.+. +++++++.++..+
T Consensus 71 L~~v~gi~~i~S~S~~G---~s~I~v~f~~g~d~~~a~~~v~~~v~~v~~~ 118 (1017)
T PRK09579 71 LASAEGIDYMTSVSRQN---FSIISIYARIGADSDRLFTELLAKANEVKNQ 118 (1017)
T ss_pred hcCCCCceEEEEEecCC---eEEEEEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence 34555556667766433 34666677766554 4566666555443
No 90
>PRK07079 hypothetical protein; Provisional
Probab=24.38 E-value=1.6e+02 Score=27.71 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=30.4
Q ss_pred CCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEe
Q 023355 240 PGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 240 ~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
++...+.+.+++.|+.+.+++.+++++.+++.+...++++
T Consensus 322 P~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~~~~v~~~ 361 (469)
T PRK07079 322 PGSARAVCQLRFVVGTDWENLAPHLRAHLDAHGFPMVEVT 361 (469)
T ss_pred cCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 4556788899999999999999999998766544444444
No 91
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=23.85 E-value=2.7e+02 Score=19.76 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=42.8
Q ss_pred CCChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccC-CCchhHHHHHHhhhccCCCCeeEEe
Q 023355 208 SIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKG-VDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 208 ~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
+.|.+.+++-++.... +|. .++....-.++.+...+.+.+.++.+ ...+++.+.++++ -|++++.|.
T Consensus 16 evDle~L~~~ik~~~~-~g~-~~~~~~~ePiaFGLkaL~~~~vv~D~~g~td~lee~i~~v---e~V~svev~ 83 (88)
T TIGR00489 16 DVDLEALKEKIKERIP-EGV-EIRKIDEEPIAFGLVAINVMVVMGDAEGGTEAAEESLSGI---EGVESVEVT 83 (88)
T ss_pred ccCHHHHHHHHHHhCc-CCc-EEeeeEEEeeeccceeeEEEEEEecCCcChHHHHHHHhcC---CCccEEEEE
Confidence 3455555555555432 344 56788888899999889999988765 3455555555444 257766653
No 92
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=23.55 E-value=85 Score=22.40 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=24.8
Q ss_pred CCeEEEEEEEEEccCCCchhHHHHHHhhhcc
Q 023355 240 PGHVVGSLSLQVNKGVDDRPILQFVHGLYHD 270 (283)
Q Consensus 240 ~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~ 270 (283)
+++..+.+.++..|..+.+++.+++++.+++
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 4677788888888888888888888886554
No 93
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=23.06 E-value=97 Score=22.27 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=20.5
Q ss_pred hhHHHHHHhhhccCCCCeeEEeecc
Q 023355 258 RPILQFVHGLYHDLGVQDLTVQIDY 282 (283)
Q Consensus 258 ~~i~~~i~~i~~~~~i~~vti~~e~ 282 (283)
+.|++.+++.++++|++.+.|.+++
T Consensus 43 ~~Ir~~v~etL~~lgV~~~~v~v~D 67 (92)
T TIGR01608 43 DDIESTVKETLKLLGVENAVVKVVD 67 (92)
T ss_pred HHHHHHHHHHHHHcCCceEEEEEEe
Confidence 5677777888889999999988764
No 94
>PF00736 EF1_GNE: EF-1 guanine nucleotide exchange domain; InterPro: IPR014038 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 2YY3_B 1GH8_A 1B64_A 1IJE_B 1IJF_B 1F60_B 1G7C_B 2B7B_B 2B7C_B.
Probab=22.27 E-value=2.9e+02 Score=19.55 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=41.6
Q ss_pred CChhHHHHHH-HHhccCCCcccccccEEEeecCCeEEEEEEEEEccC-CCchhHHHHHHhhhccCCCCeeEE
Q 023355 209 IPSSALSKCW-RQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKG-VDDRPILQFVHGLYHDLGVQDLTV 278 (283)
Q Consensus 209 ~~~~~~~~i~-~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~~i~~i~~~~~i~~vti 278 (283)
.|.+.+.+-+ +.+ ..+|....+..+.-.++.+...+.+.+.++.+ .+.+++.+.++ ....+++.+.|
T Consensus 15 ~Dl~~l~~~Ik~~i-~~~gl~w~~~~~~epIaFGlk~L~v~~vv~D~~~~~d~lee~i~--~~~e~Vqsvei 83 (89)
T PF00736_consen 15 TDLEKLEKKIKRKI-PMEGLKWGEKSKEEPIAFGLKALQVSCVVEDDEGSTDDLEEAIE--SFEEGVQSVEI 83 (89)
T ss_dssp S-HHHHHHHHHHHS--TTTEEEEEEEEEEEECTTEEEEEEEEEECTTTCGHHHHHHHHT--TCTTTEEEEEE
T ss_pred ccHHHHHHHHHHhc-hhcceeeeeeeeeeeecccEEEEEEEEEEEcCccChHHHHHHHH--hcCCCccEEEE
Confidence 3445555444 333 45566667788999999999899999988764 34566666551 12244666655
No 95
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.65 E-value=2.4e+02 Score=18.39 Aligned_cols=44 Identities=9% Similarity=0.314 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHhcCCCCcch-hHHHHHHHHHHHHH
Q 023355 75 FTNALFLLFMSFSL---AVEALHAFIQDESEHK-HYLIVSAVTNLLVN 118 (283)
Q Consensus 75 ~~~~~~l~~~~~~i---~~~ai~~l~~~~~~~~-~~~~~~~~~~l~v~ 118 (283)
++.++.+...+... +.+.+.+.+.+++.+. .+.++.+.++.++-
T Consensus 8 lv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivG 55 (59)
T PF11381_consen 8 LVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVG 55 (59)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHH
Confidence 44555565555544 4455777788887654 45555555555543
No 96
>PF15220 HILPDA: Hypoxia-inducible lipid droplet-associated
Probab=21.55 E-value=2.3e+02 Score=18.09 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCCCC
Q 023355 74 AFTNALFLLFMSFSL-AVEALHAFIQDES 101 (283)
Q Consensus 74 ~~~~~~~l~~~~~~i-~~~ai~~l~~~~~ 101 (283)
-.+.++.+.+.++|+ +.|++..+++.+.
T Consensus 7 lyllgvvltllsifvrlmesle~llesp~ 35 (63)
T PF15220_consen 7 LYLLGVVLTLLSIFVRLMESLEGLLESPS 35 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345677788888887 8999999986543
No 97
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=21.52 E-value=80 Score=33.08 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=0.0
Q ss_pred cCCCCCCChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhcc
Q 023355 203 QMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHD 270 (283)
Q Consensus 203 ~~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~ 270 (283)
+++|++.+.+..+++.+.+.+.+|+ ++++.....| ...+.++++.+.+.++..+++++..++
T Consensus 51 gas~~~ve~~vt~plE~~l~~v~gv---~~i~S~s~~g---~s~i~v~f~~~~d~~~a~~~v~~~i~~ 112 (1021)
T PF00873_consen 51 GASPEEVEQLVTKPLEEALSSVEGV---KEIRSTSREG---SSSITVEFDDGTDIDEALQEVREKIDQ 112 (1021)
T ss_dssp TS-HHHHHHHTHHHHHHTHCSSTTE---EEEEEEETTS---EEEEEEEESTTS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCe---EEEEEEecCC---cEEEEEEeccccCHHHHHHHHHHHHHh
No 98
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=21.34 E-value=2.7e+02 Score=18.83 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=19.9
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 023355 57 KPDFAYTYGYKRLEVLSAFTNALFLLFMSFS 87 (283)
Q Consensus 57 ~~d~~~~~G~~r~e~l~~~~~~~~l~~~~~~ 87 (283)
+...++..+..+.|.+-..+=++++.+.++-
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~p 80 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLAFP 80 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHhh
Confidence 4556777788889999888888777777654
No 99
>PRK11027 hypothetical protein; Provisional
Probab=20.92 E-value=45 Score=24.91 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=11.9
Q ss_pred CCCCCCCCchhHHHH
Q 023355 58 PDFAYTYGYKRLEVL 72 (283)
Q Consensus 58 ~d~~~~~G~~r~e~l 72 (283)
.|++||+||.|--..
T Consensus 13 D~knfPrGF~RsGdF 27 (112)
T PRK11027 13 DDKNYPRGFSRSGDF 27 (112)
T ss_pred CCCCCCCCcccCCCc
Confidence 578999999996433
No 100
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=20.61 E-value=7e+02 Score=23.30 Aligned_cols=14 Identities=0% Similarity=-0.107 Sum_probs=6.4
Q ss_pred cCCCCCCCCCchhH
Q 023355 56 QKPDFAYTYGYKRL 69 (283)
Q Consensus 56 ~~~d~~~~~G~~r~ 69 (283)
|+++++-||-.++.
T Consensus 408 ~~~~~~~~f~lg~~ 421 (482)
T TIGR00907 408 RNTIAPGPFWLGKY 421 (482)
T ss_pred CCCCCCCCCcCCcc
Confidence 33344445554443
No 101
>PRK11023 outer membrane lipoprotein; Provisional
Probab=20.41 E-value=2e+02 Score=23.55 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=17.6
Q ss_pred HhhcCCCCCCChhHHHHHHHHhccCCCccccc
Q 023355 200 ILLQMAPPSIPSSALSKCWRQIVSREDVTEVS 231 (283)
Q Consensus 200 ~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~~v~ 231 (283)
.|.+..|. +++.++..+...+.+||++|+
T Consensus 80 ~L~G~V~~---~~~k~~A~~ia~~v~GV~~V~ 108 (191)
T PRK11023 80 LLTGQSPN---AELSERAKQIAMGVEGVNEVY 108 (191)
T ss_pred EEEEEeCC---HHHHHHHHHHHhcCCCceeec
Confidence 34555443 345555555666788988776
No 102
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.41 E-value=4.9e+02 Score=21.40 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023355 76 TNALFLLFMSFSLAVEALHAFIQDES 101 (283)
Q Consensus 76 ~~~~~l~~~~~~i~~~ai~~l~~~~~ 101 (283)
..-..+++.+++.+..++..++++..
T Consensus 82 ~ld~~L~~~~if~~~~gi~~~f~~~~ 107 (206)
T PF06570_consen 82 ALDNSLLFFGIFSLLFGIMGFFSPKN 107 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444455667777788888888754
No 103
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=20.33 E-value=2.1e+02 Score=20.72 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=36.0
Q ss_pred CCCCCChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhcc
Q 023355 205 APPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHD 270 (283)
Q Consensus 205 ~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~ 270 (283)
.|...+.+.++.+.+...+.+.|++.+-..... .++....-+-+.+++ .+.+++.+.+.+..++
T Consensus 12 ~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~-~~~~~~~li~vd~~~-~~~~~~~~~i~~~~~~ 75 (108)
T PF14581_consen 12 EPEEEPTDLLAALSEYFKQHKNVRAAYLALMQD-EDEQPSLLIGVDFDG-EDIEEIFQEIGRAARP 75 (108)
T ss_pred CCccCHHHHHHHHHHHHhhCccHHHhHHHHhhc-cCCCceEEEEEeccC-hhHHHHHHHHHHHhhh
Confidence 344444455555555566777777655444444 234444455555555 4666777777665544
No 104
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.24 E-value=2.4e+02 Score=17.76 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=21.4
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeec----CCeEEEEEEEEEc
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELV----PGHVVGSLSLQVN 252 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~----~~~~~~~i~i~v~ 252 (283)
..+.++.+.+.+. ++ ++.++....-. .+...+.+++.++
T Consensus 10 G~L~~i~~~i~~~-~~-nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 10 GQLAKLLAVIAEA-GA-NIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred ChHHHHHHHHHHc-CC-CEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 5677777776543 33 45555555421 3455556666653
No 105
>PRK05783 hypothetical protein; Provisional
Probab=20.23 E-value=3.2e+02 Score=19.22 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=14.1
Q ss_pred HHHhh-hccCCCCeeEEeeccC
Q 023355 263 FVHGL-YHDLGVQDLTVQIDYD 283 (283)
Q Consensus 263 ~i~~i-~~~~~i~~vti~~e~~ 283 (283)
..+++ +.++-+++.++.++++
T Consensus 63 mc~~LrLaNpVIe~y~i~~~~~ 84 (84)
T PRK05783 63 IAREGRLYNPIVHKIVVRVRRE 84 (84)
T ss_pred HHHhcCcCCceeEEEEEEEEeC
Confidence 33455 6667788888888764
No 106
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=20.20 E-value=2.9e+02 Score=19.11 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=24.9
Q ss_pred eEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEe
Q 023355 242 HVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 242 ~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
...+++++..++ .+...+++...++-++.|+. +.+|
T Consensus 48 ~~~~e~~v~~~~-~~~~~lr~~L~~la~elgvD-IavQ 83 (84)
T cd04871 48 KACVEFSVRGQP-ADLEALRAALLELASELNVD-IAFQ 83 (84)
T ss_pred cEEEEEEEeCCC-CCHHHHHHHHHHHhcccCce-EEEe
Confidence 445677776444 67788888888888887764 5544
Done!