Query 023355
Match_columns 283
No_of_seqs 122 out of 1398
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 100.0 1.1E-55 3.7E-60 386.7 14.8 273 1-283 3-280 (283)
2 3j1z_P YIIP, cation efflux fam 100.0 8.4E-55 2.9E-59 384.5 16.7 273 1-283 12-289 (306)
3 3byp_A CZRB protein; membrane 99.3 3.1E-12 1.1E-16 92.6 6.5 80 200-283 1-86 (94)
4 2zzt_A Putative uncharacterize 99.2 7.8E-11 2.7E-15 87.2 7.3 78 202-283 1-85 (107)
5 3h90_A Ferrous-iron efflux pum 97.1 0.0002 6.9E-09 61.6 3.1 91 5-103 115-205 (283)
6 3j1z_P YIIP, cation efflux fam 97.1 0.00024 8.3E-09 61.9 3.6 90 6-103 125-214 (306)
7 1zpv_A ACT domain protein; str 71.5 16 0.00056 24.4 6.9 65 211-279 16-80 (91)
8 2zbc_A 83AA long hypothetical 65.6 15 0.00052 24.0 5.6 57 214-280 15-73 (83)
9 2djw_A Probable transcriptiona 64.7 12 0.00041 25.4 5.0 57 212-278 13-71 (92)
10 2cvi_A 75AA long hypothetical 62.3 25 0.00086 23.1 6.2 56 214-279 15-72 (83)
11 2jsx_A Protein NAPD; TAT, proo 59.3 36 0.0012 23.5 6.7 61 211-280 16-76 (95)
12 3cq1_A Putative uncharacterize 52.2 44 0.0015 23.2 6.3 27 256-282 56-83 (103)
13 2hiq_A Hypothetical protein YD 49.2 37 0.0013 24.4 5.4 63 213-280 29-92 (113)
14 2cyy_A Putative HTH-type trans 48.6 41 0.0014 24.9 6.0 60 211-279 77-136 (151)
15 1uwd_A Hypothetical protein TM 48.4 47 0.0016 23.0 5.9 26 256-281 57-83 (103)
16 2vv5_A MSCS, small-conductance 43.3 76 0.0026 26.5 7.5 74 209-282 196-279 (286)
17 2e1c_A Putative HTH-type trans 42.9 51 0.0017 25.2 5.9 60 211-279 97-156 (171)
18 2pn6_A ST1022, 150AA long hypo 42.5 54 0.0019 24.0 5.9 59 211-279 75-135 (150)
19 2cg4_A Regulatory protein ASNC 41.3 64 0.0022 23.8 6.1 58 213-279 81-139 (152)
20 2dbb_A Putative HTH-type trans 39.9 98 0.0033 22.6 7.0 62 210-279 78-140 (151)
21 3i4p_A Transcriptional regulat 39.8 83 0.0028 23.6 6.6 60 211-279 76-135 (162)
22 1i1g_A Transcriptional regulat 38.5 73 0.0025 23.0 6.0 61 211-280 74-135 (141)
23 2jvf_A De novo protein M7; tet 34.6 22 0.00076 23.1 2.0 35 246-280 51-85 (96)
24 2yy3_A Elongation factor 1-bet 33.9 1.1E+02 0.0039 20.9 7.9 67 208-279 18-86 (91)
25 1u8s_A Glycine cleavage system 33.1 1.2E+02 0.004 23.4 6.6 67 211-280 104-177 (192)
26 2ia0_A Putative HTH-type trans 31.7 1.3E+02 0.0043 22.8 6.5 55 213-277 96-151 (171)
27 2p5v_A Transcriptional regulat 29.7 1.4E+02 0.0048 22.1 6.4 58 212-278 83-141 (162)
28 2kl8_A OR15; structural genomi 26.0 1.3E+02 0.0043 19.1 4.4 39 234-274 33-71 (85)
29 2jp3_A FXYD domain-containing 25.5 1.1E+02 0.0037 19.6 4.1 34 57-91 5-38 (67)
30 2nyi_A Unknown protein; protei 23.8 1.1E+02 0.0039 23.6 5.0 67 210-280 103-174 (195)
31 2asy_A Protein YDHR precursor; 23.0 52 0.0018 23.9 2.5 64 212-280 43-107 (123)
32 2l16_A SEC-independent protein 22.2 1.8E+02 0.006 19.2 5.2 30 188-217 34-63 (78)
33 3eml_A Human adenosine A2A rec 22.2 3.8E+02 0.013 23.1 10.5 47 108-161 29-75 (488)
34 1gh8_A Translation elongation 21.8 1.9E+02 0.0066 19.5 7.4 67 208-279 16-83 (89)
35 4djk_A Probable glutamate/gamm 20.6 4.4E+02 0.015 23.2 11.6 8 62-69 403-410 (511)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=1.1e-55 Score=386.75 Aligned_cols=273 Identities=15% Similarity=0.155 Sum_probs=250.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHH
Q 023355 1 MKRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALF 80 (283)
Q Consensus 1 ~r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~ 80 (283)
+|++++++++|++++++|+++|+++||.||++||+||+.|+++.++++++.+.++||||++|||||+|+|++++++++++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcch-hHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHH
Q 023355 81 LLFMSFSLAVEALHAFIQDESEHK-HYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAG 159 (283)
Q Consensus 81 l~~~~~~i~~~ai~~l~~~~~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~ 159 (283)
+++.++++++++++++++|++.++ .++++++++++++|.++++++++.+| +.+|++++++++|+++|.+++++
T Consensus 83 l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~~~~~------~~~s~~l~a~~~h~~~D~~~s~~ 156 (283)
T 3h90_A 83 ISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVR------RTQSQAVRADMLHYQSDVMMNGA 156 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHHHH------HSCCHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988555 45688888999999999999988765 67899999999999999999999
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCCcccccccEEEeec
Q 023355 160 LILASWFLSLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELV 239 (283)
Q Consensus 160 vl~~~~~~~~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~ 239 (283)
++++..+.++||+|+||++++++++++++.+++++|++.+.|+|++|++ +..+++.+.+++.|||.++|++|+|+.|
T Consensus 157 vli~~~~~~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~---~~~~~i~~~i~~~~~V~~v~~l~~~~~G 233 (283)
T 3h90_A 157 ILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPD---EERQEIIDIVTSWPGVSGAHDLRTRQSG 233 (283)
T ss_dssp SCSSSCSCSTTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH---HHHHHHHHHHHHSSSCSEEEEEEEEEET
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHhcCCCcccceeeEEEEEC
Confidence 9998777667999999999999999999999999999999999998754 5667777777888999999999999987
Q ss_pred CCeEEEEEEEEEccCC---CchhHHHHHHhh-hccCCCCeeEEeeccC
Q 023355 240 PGHVVGSLSLQVNKGV---DDRPILQFVHGL-YHDLGVQDLTVQIDYD 283 (283)
Q Consensus 240 ~~~~~~~i~i~v~~~~---~~~~i~~~i~~i-~~~~~i~~vti~~e~~ 283 (283)
+ ...+++|+++|++. +.|++.+++|+. .++++..++|||+||.
T Consensus 234 ~-~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~v~ih~ep~ 280 (283)
T 3h90_A 234 P-TRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPC 280 (283)
T ss_dssp T-EEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCEEEEEEECS
T ss_pred C-cEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 5 56779999999986 468899999884 5678889999999995
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=8.4e-55 Score=384.50 Aligned_cols=273 Identities=13% Similarity=0.076 Sum_probs=249.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHH
Q 023355 1 MKRLFLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALF 80 (283)
Q Consensus 1 ~r~l~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~ 80 (283)
|++.+.+++.|++++++|+++|+++||.||++||+||+.|++++++++++.+.++||||++|||||+|+|++++++++++
T Consensus 12 r~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~ 91 (306)
T 3j1z_P 12 KLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQSAF 91 (306)
T ss_dssp STTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcch-hHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHH
Q 023355 81 LLFMSFSLAVEALHAFIQDESEHK-HYLIVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAG 159 (283)
Q Consensus 81 l~~~~~~i~~~ai~~l~~~~~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~ 159 (283)
++++++++++++++++++|++... .+++++++++++.+...+++.++.++ +.+|.+++++++|.++|.+++++
T Consensus 92 l~~~~~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~s~~l~a~~~h~~~D~l~s~~ 165 (306)
T 3j1z_P 92 IMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALA------ATNSTVVEADSLHYKSDLFLNAA 165 (306)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHHT------TSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHHHhcc------ccCCHHHHHHHHhhcchhhhhhH
Confidence 999999999999999999988554 56677788899999999888887665 77899999999999999999999
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhccCCCcccccccEEEeec
Q 023355 160 LILASWFLSLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELV 239 (283)
Q Consensus 160 vl~~~~~~~~~~~~~D~i~~i~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~ 239 (283)
++++.++.++||+|+||++++++++++++.+++++|++.+.|+|++|++ +..+++.+.+++.|+|.++|++|+|+.|
T Consensus 166 vli~~~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~---~~~~~I~~~i~~~~~V~~vh~l~~~~~G 242 (306)
T 3j1z_P 166 VLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDE---DTRQRIKLIAKEDPRVLGLHDLRTRQAG 242 (306)
T ss_dssp CCCTTSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH---HHHHHHHHHHHHSTTBCCCCCBCCEEET
T ss_pred HHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccch---hHHHHHHHHHhcCCCcceeeeEEEEEEC
Confidence 9999887778999999999999999999999999999999999998754 5566666677788999999999999987
Q ss_pred CCeEEEEEEEEEccCCC---chhHHHHHHh-hhccCCCCeeEEeeccC
Q 023355 240 PGHVVGSLSLQVNKGVD---DRPILQFVHG-LYHDLGVQDLTVQIDYD 283 (283)
Q Consensus 240 ~~~~~~~i~i~v~~~~~---~~~i~~~i~~-i~~~~~i~~vti~~e~~ 283 (283)
+ ...+++|+++||+.+ .|++.+++|+ +.+++++.++|||+||.
T Consensus 243 ~-~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~ 289 (306)
T 3j1z_P 243 K-TVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPV 289 (306)
T ss_dssp T-EEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEET
T ss_pred C-cEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 5 667799999999964 6789999987 56679999999999984
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.31 E-value=3.1e-12 Score=92.56 Aligned_cols=80 Identities=13% Similarity=0.127 Sum_probs=61.5
Q ss_pred HhhcCCCCCCChhHHHHHHHHhccC--CCcccccccEEEeecCCeEEEEEEEEEccCCC---chhHHHHHHh-hhccCCC
Q 023355 200 ILLQMAPPSIPSSALSKCWRQIVSR--EDVTEVSQARFWELVPGHVVGSLSLQVNKGVD---DRPILQFVHG-LYHDLGV 273 (283)
Q Consensus 200 ~Ll~~~p~~~~~~~~~~i~~~i~~~--~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~---~~~i~~~i~~-i~~~~~i 273 (283)
.|||.+|+. +..+++.+.+.+. |||.++|++|+|+.|+ .+.+++|+.++++++ ++++.+++++ +.++|++
T Consensus 1 ~Lld~~~~~---~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~-~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~ 76 (94)
T 3byp_A 1 GLMDEGLPP---EEVERIRAFLQERIRGRALEVHDLKTRRAGP-RSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG 76 (94)
T ss_dssp -----CCCH---HHHHHHHHHHHHHHTTTCSEEEEEEEEEETT-EEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCcCCCCCH---HHHHHHHHHHHhcCCCCceeeeeEEEEEECC-cEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCC
Confidence 378887654 5566666677777 9999999999999875 578899999998864 5788999988 5567888
Q ss_pred CeeEEeeccC
Q 023355 274 QDLTVQIDYD 283 (283)
Q Consensus 274 ~~vti~~e~~ 283 (283)
.++|||+||+
T Consensus 77 ~~vtIh~ep~ 86 (94)
T 3byp_A 77 LQATIHVEPE 86 (94)
T ss_dssp EEEEEEEEEC
T ss_pred CEEEEEeCCC
Confidence 8999999985
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.15 E-value=7.8e-11 Score=87.20 Aligned_cols=78 Identities=6% Similarity=0.133 Sum_probs=61.3
Q ss_pred hcCCCCCCChh--HHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCC---chhHHHHHHh-hhccCC-CC
Q 023355 202 LQMAPPSIPSS--ALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVD---DRPILQFVHG-LYHDLG-VQ 274 (283)
Q Consensus 202 l~~~p~~~~~~--~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~---~~~i~~~i~~-i~~~~~-i~ 274 (283)
||.+| +++ .++++.+.+.+.|||.++|++|+|+.| +.+.+++|+.++++++ ++++.+++++ +.++|+ +.
T Consensus 1 md~~~---~~~~~~~~~I~~~l~~~~gV~~vh~lr~r~~G-~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~ 76 (107)
T 2zzt_A 1 MDGMK---RTELDMYDDIFAVLERFPNVHNPHRVRIRRVG-TKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIE 76 (107)
T ss_dssp ---CC---HHHHHHHHHHHHHHTTCSSCEEEEEEEEECSC-C-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCC---CccHHHHHHHHHHHHcCCCccccEEEEEEEEC-CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCc
Confidence 45554 345 677777888899999999999999966 5678899999999865 5678999987 556788 89
Q ss_pred eeEEeeccC
Q 023355 275 DLTVQIDYD 283 (283)
Q Consensus 275 ~vti~~e~~ 283 (283)
++|||+||.
T Consensus 77 ~vtIhvEp~ 85 (107)
T 2zzt_A 77 DVTIHVEPL 85 (107)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEecC
Confidence 999999984
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=97.14 E-value=0.0002 Score=61.65 Aligned_cols=91 Identities=14% Similarity=0.245 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 023355 5 FLLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLFM 84 (283)
Q Consensus 5 ~~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~~ 84 (283)
.+++..|..++....-.+--.+|.++.+|+.|...|+++++..+.+...+ .+|+..++++++++.+++++..
T Consensus 115 ~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i~~~ 186 (283)
T 3h90_A 115 IVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYILYS 186 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHHHHH
Confidence 45677777777777777778899999999999999999998776664332 2588889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcc
Q 023355 85 SFSLAVEALHAFIQDESEH 103 (283)
Q Consensus 85 ~~~i~~~ai~~l~~~~~~~ 103 (283)
++.++++++..+++..+++
T Consensus 187 ~~~l~~~s~~~Ll~~~~~~ 205 (283)
T 3h90_A 187 ALRMGYEAVQSLLDRALPD 205 (283)
T ss_dssp HHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCCCH
Confidence 9999999999999866543
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=97.14 E-value=0.00024 Score=61.91 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHhhHHhhhHHHHHHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 023355 6 LLISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSMFAMAASRQKPDFAYTYGYKRLEVLSAFTNALFLLFMS 85 (283)
Q Consensus 6 ~~l~~~~~~~~~~l~~~~~~~S~al~ada~~sl~d~~~~~~~l~~~~~~~~~~d~~~~~G~~r~e~l~~~~~~~~l~~~~ 85 (283)
.++..|..+...+--.+--.+|.++.+|+.|...|+++++..+.+.-.+. ||+..++++++++.+++++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~I~~~~ 196 (306)
T 3j1z_P 125 VAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACYIGQQA 196 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHHHHHHH
Confidence 45556666666666666778999999999999999999988777655432 6888899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcc
Q 023355 86 FSLAVEALHAFIQDESEH 103 (283)
Q Consensus 86 ~~i~~~ai~~l~~~~~~~ 103 (283)
+.++++++..|++..+..
T Consensus 197 ~~l~~~s~~~Ll~~~~~~ 214 (306)
T 3j1z_P 197 FDLGYRSIQALLDRELDE 214 (306)
T ss_dssp HHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCcccch
Confidence 999999999999876543
No 7
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=71.51 E-value=16 Score=24.38 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=44.4
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEe
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
+..+.++.+.+.+. |+ +|.+++..... +...+.+.+.+++..+.+++.++++++-++++++ +.++
T Consensus 16 pGila~vt~~la~~-~~-NI~~i~~~~~~-~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~~~-~~~~ 80 (91)
T 1zpv_A 16 SGIVAGVSGKIAEL-GL-NIDDISQTVLD-EYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVK-INIQ 80 (91)
T ss_dssp TTHHHHHHHHHHHT-TC-EEEEEEEEEET-TEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTEE-EEEE
T ss_pred CCHHHHHHHHHHHc-CC-CEEEEEeEEEc-CEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcCCE-EEEe
Confidence 36777777766543 54 67777776654 5667788887776567788888888877776543 4444
No 8
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=65.63 E-value=15 Score=24.01 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=33.4
Q ss_pred HHHHHHHhccCCCcccccccEEEeecC-CeEEEEEEEEEccCCCchhHHHHHHh-hhccCCCCeeEEee
Q 023355 214 LSKCWRQIVSREDVTEVSQARFWELVP-GHVVGSLSLQVNKGVDDRPILQFVHG-LYHDLGVQDLTVQI 280 (283)
Q Consensus 214 ~~~i~~~i~~~~~v~~v~~~~~~~~~~-~~~~~~i~i~v~~~~~~~~i~~~i~~-i~~~~~i~~vti~~ 280 (283)
.++..+.+.+.|+|.+++ .+.| ..+. +++.+ .+.+++.+-+.+ +.+-.|+..+.-++
T Consensus 15 ~~~~~~~l~~~peV~~~~-----~vtG~~d~l--~~v~~---~d~~~l~~~~~~~l~~~~gV~~~~t~i 73 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVH-----VVYGVYDIV--VKVEA---DSMDKLKDFVTNTIRKLPKVRSTLTMI 73 (83)
T ss_dssp HHHHHHHHTTCTTEEEEE-----ECSSSCSEE--EEEEC---SSHHHHHHHHHHTGGGSTTEEEEEEEE
T ss_pred HHHHHHHHhCCCCeEEEE-----EEeccCCEE--EEEEE---CCHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 467777888899987654 3333 3333 44433 355666666653 55556776655443
No 9
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=64.67 E-value=12 Score=25.36 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=32.4
Q ss_pred hHHHHHHHHhccCCCcccccccEEEee-cCCeEEEEEEEEEccCCCchhHHHHHH-hhhccCCCCeeEE
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWEL-VPGHVVGSLSLQVNKGVDDRPILQFVH-GLYHDLGVQDLTV 278 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~-~~~~~~~~i~i~v~~~~~~~~i~~~i~-~i~~~~~i~~vti 278 (283)
...++..+.+.+.|+|.+++ .+ |+..+. +++.++ +.+++.+-+. ++.+..|+.++.-
T Consensus 13 ~~~~~~~~~l~~~peV~~~~-----~vtG~~D~l--l~v~~~---d~~~l~~~l~~~l~~~~gV~~~~T 71 (92)
T 2djw_A 13 NRVQALGEAIAELPQVAEVY-----SVTGPYDLV--ALVRLK---DVEELDDVVTQGILSLEGVERTET 71 (92)
T ss_dssp GGHHHHHHHHTTSTTEEEEE-----EESSSSSEE--EEEEES---SGGGHHHHCCCCCTTSTTEEEEEE
T ss_pred CCHHHHHHHHhcCCCeEEEE-----EeecCCCEE--EEEEEC---CHHHHHHHHHHhcccCCCEeEEEE
Confidence 44677888898999987654 33 333444 444443 4555555553 3444456654443
No 10
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=62.26 E-value=25 Score=23.13 Aligned_cols=56 Identities=9% Similarity=0.107 Sum_probs=33.2
Q ss_pred HHHHHHHhccCCCcccccccEEEeecC-CeEEEEEEEEEccCCCchhHHHHHHh-hhccCCCCeeEEe
Q 023355 214 LSKCWRQIVSREDVTEVSQARFWELVP-GHVVGSLSLQVNKGVDDRPILQFVHG-LYHDLGVQDLTVQ 279 (283)
Q Consensus 214 ~~~i~~~i~~~~~v~~v~~~~~~~~~~-~~~~~~i~i~v~~~~~~~~i~~~i~~-i~~~~~i~~vti~ 279 (283)
.++..+.+.+.|+|..++ .+.| ..+. +++.+ .+.+++.+-+.+ +.+-.|+..+.-.
T Consensus 15 ~~~~~~~l~~~peV~e~~-----~vtG~~D~l--l~v~~---~d~~~l~~~i~~~l~~~~gV~~~~T~ 72 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAY-----VVYGEYDLI--VKVET---DTLKDLDQFITEKIRKMPEIQMTSTM 72 (83)
T ss_dssp HHHHHHHHHTSTTEEEEE-----ECBSSCSEE--EEEEE---SSHHHHHHHHHTTGGGCTTEEEEEEE
T ss_pred HHHHHHHHhCCCCeeEEE-----EEcccCCEE--EEEEE---CCHHHHHHHHHHHhccCCCEeEEEEE
Confidence 467777888899987664 3343 3444 44443 356666666664 4444677655443
No 11
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=59.34 E-value=36 Score=23.51 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
++..+++.+.+.+.||+ .+ +..+-..+++++.++- .+.+++.+.++++.+-.||..++..+
T Consensus 16 p~~~~~V~~~L~~ipgv-Ei---~~~~~~~GkiVV~iEa-----~~~~~l~~~i~~I~~i~GVlst~lvy 76 (95)
T 2jsx_A 16 SERISDISTQLNAFPGC-EV---AVSDAPSGQLIVVVEA-----EDSETLIQTIESVRNVEGVLAVSLVY 76 (95)
T ss_dssp TTSHHHHHHHHTTSTTE-EE---EEEETTTTEEEEEEEE-----SSHHHHHHHHHHHTTSTTEEEEEESS
T ss_pred CCCHHHHHHHHHCCCCe-EE---EEecCCCCCEEEEEEe-----CCHHHHHHHHHHHhcCCCccEEeEEE
Confidence 35677888889889988 44 3333113455544433 56777888887777767877666544
No 12
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=52.18 E-value=44 Score=23.19 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=20.0
Q ss_pred CchhHHHHHHhhhcc-CCCCeeEEeecc
Q 023355 256 DDRPILQFVHGLYHD-LGVQDLTVQIDY 282 (283)
Q Consensus 256 ~~~~i~~~i~~i~~~-~~i~~vti~~e~ 282 (283)
-.+.+.+.+++.+++ .|+..+.|++..
T Consensus 56 ~~~~l~~~i~~al~~l~gv~~V~V~l~~ 83 (103)
T 3cq1_A 56 LHDSLGEAVRQALSRLPGVEEVEVEVTF 83 (103)
T ss_dssp SSCHHHHHHHHHHHTSTTCCEEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCceeEEEEEec
Confidence 356788899886555 689988887643
No 13
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=49.18 E-value=37 Score=24.37 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCCCcccccccEEEeecCCe-EEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 213 ALSKCWRQIVSREDVTEVSQARFWELVPGH-VVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 213 ~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~-~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
..++..+++.+.||..+ ++|..+.+. -..-+++ .+...+++.-.+.-.+.++++|+.++..++
T Consensus 29 ~f~~lA~si~~epGLiw----KiWte~e~t~~aGGiYL-Fes~~~AeaY~~~h~arl~~~Gi~~i~~ki 92 (113)
T 2hiq_A 29 QLKPLAESINQEPGFLW----KVWTESEKNHEAGGIYL-FTDEKSALAYLEKHTARLKNLGVEEVVAKV 92 (113)
T ss_dssp HSHHHHHHHTTSTTEEE----EEEEEETTTTEEEEEEE-ESSHHHHHHHHHHHHHHHGGGTCCCCEEEE
T ss_pred HHHHHHHHHhcCCCcEE----EEEEEcCCCCeeeEEEE-eCCHHHHHHHHHHHHHHHHHcCCcceEEEE
Confidence 33455667888999853 667766554 4667777 343344444333334567788998888765
No 14
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=48.62 E-value=41 Score=24.92 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEe
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
++..+++.+.+.+.|+|..++.. .|+..+.+.++. .+.+++.+.++++.+..|+.++...
T Consensus 77 ~~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~-----~d~~~l~~~~~~l~~~~gV~~~~t~ 136 (151)
T 2cyy_A 77 AGKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRT-----KNSEELNNFLDLIGSIPGVEGTHTM 136 (151)
T ss_dssp TTCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEE-----SSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred cccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEE-----CCHHHHHHHHHHHhCCCCEeEEEEE
Confidence 35567777888889998765431 133344443333 3445555555445555666555443
No 15
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=48.36 E-value=47 Score=23.01 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=19.3
Q ss_pred CchhHHHHHHhhhcc-CCCCeeEEeec
Q 023355 256 DDRPILQFVHGLYHD-LGVQDLTVQID 281 (283)
Q Consensus 256 ~~~~i~~~i~~i~~~-~~i~~vti~~e 281 (283)
-.+.+.+.+++.+++ .|+..+.|++.
T Consensus 57 ~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 57 LAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp SHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 356788888886555 68988888764
No 16
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=43.30 E-value=76 Score=26.51 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=42.2
Q ss_pred CChhHHHHHHHHh-ccCCCcccc--cccEEEeecCCeEEEEEEEEEccCCC---chhHHHHHHhhhccCCC----CeeEE
Q 023355 209 IPSSALSKCWRQI-VSREDVTEV--SQARFWELVPGHVVGSLSLQVNKGVD---DRPILQFVHGLYHDLGV----QDLTV 278 (283)
Q Consensus 209 ~~~~~~~~i~~~i-~~~~~v~~v--~~~~~~~~~~~~~~~~i~i~v~~~~~---~~~i~~~i~~i~~~~~i----~~vti 278 (283)
.|.++++++++++ .+.|++..- ..+++...+++.....+...+++... ..++.+++.+.+++.|+ .+-++
T Consensus 196 ~d~~~v~~~l~~~~~~~~~vl~~p~p~v~v~~~~~~~i~~~v~~~~~~~~~~~~~~~l~~~i~~~~~~~gI~ip~P~~~v 275 (286)
T 2vv5_A 196 SDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDV 275 (286)
T ss_dssp SCHHHHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEE
T ss_pred CCHHHHHHHHHHHHHhCcccccCCCCEEEEEEecCCeEEEEEEEEEccchHHHHHHHHHHHHHHHHHHCCCcCCCCceEE
Confidence 4556666665554 346665422 24566778887777788887776421 23455556555554443 35566
Q ss_pred eecc
Q 023355 279 QIDY 282 (283)
Q Consensus 279 ~~e~ 282 (283)
|++.
T Consensus 276 ~~~~ 279 (286)
T 2vv5_A 276 NFKR 279 (286)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 6543
No 17
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=42.89 E-value=51 Score=25.19 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEe
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
++..+++.+.+.+.|+|..++.. .|+..+.+ .+.+ .+.+++.+.++++.+..|+.++...
T Consensus 97 ~~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~--~v~~---~d~~~l~~~l~~l~~~~gV~~~~t~ 156 (171)
T 2e1c_A 97 AGKYSEVASNLAKYPEIVEVYET----TGDYDMVV--KIRT---KNSEELNNFLDLIGSIPGVEGTHTM 156 (171)
T ss_dssp TTCHHHHHHHHHTSTTEEEEEEC----SSSSSEEE--EEEE---SSHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred cchHHHHHHHHhcCcCeEEEEEe----eCCCCEEE--EEEE---CCHHHHHHHHHHHhcCCCcceEEEE
Confidence 35567788888889998765421 13334343 4433 3445555555445555666555443
No 18
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=42.48 E-value=54 Score=24.04 Aligned_cols=59 Identities=7% Similarity=-0.066 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEee-cCCeEEEEEEEEEccCCCchhHHHHH-HhhhccCCCCeeEEe
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWEL-VPGHVVGSLSLQVNKGVDDRPILQFV-HGLYHDLGVQDLTVQ 279 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~-~~~~~~~~i~i~v~~~~~~~~i~~~i-~~i~~~~~i~~vti~ 279 (283)
++..++..+.+.+.|+|..++ .+ |+..+.+.++. .+.+++.+.+ +++.+..|+.++...
T Consensus 75 ~~~~~~~~~~l~~~p~V~~~~-----~~tG~~d~~~~v~~-----~d~~~l~~~l~~~l~~~~gV~~~~t~ 135 (150)
T 2pn6_A 75 KNYHVELGNKLAQIPGVWGVY-----FVLGDNDFIVMARY-----KTREEFMEKFLERVMSIPEVERTSTQ 135 (150)
T ss_dssp TTHHHHHHHHHHTSTTEEEEE-----ECSSSCSEEEEEEE-----SSHHHHHHHTHHHHTTCTTEEEEEEE
T ss_pred hhHHHHHHHHHhcCchhhhhh-----hhcCcCCEEEEEEE-----CCHHHHHHHHHHHhccCCCeeEEEEE
Confidence 356778888888899986654 33 33334433333 3556666666 445555677655544
No 19
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=41.32 E-value=64 Score=23.78 Aligned_cols=58 Identities=9% Similarity=-0.030 Sum_probs=34.3
Q ss_pred HHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHh-hhccCCCCeeEEe
Q 023355 213 ALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHG-LYHDLGVQDLTVQ 279 (283)
Q Consensus 213 ~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~-i~~~~~i~~vti~ 279 (283)
..+++.+.+.+.|+|..++.. .|+..+.+.++. .+.+++.+.+.+ +.+..|+.++...
T Consensus 81 ~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~-----~d~~~l~~~l~~~l~~~~gV~~~~t~ 139 (152)
T 2cg4_A 81 DYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMC-----RSIDALQHVLINKIQTIDEIQSTETL 139 (152)
T ss_dssp GHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEE-----SCHHHHHHHHHHTTTTSTTEEEEEEE
T ss_pred CHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEE-----CCHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 567778888889998766422 233343433333 356667676644 5555677655443
No 20
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=39.87 E-value=98 Score=22.64 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHH-HhhhccCCCCeeEEe
Q 023355 210 PSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFV-HGLYHDLGVQDLTVQ 279 (283)
Q Consensus 210 ~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i-~~i~~~~~i~~vti~ 279 (283)
+++..+++.+.+.+.|+|..++.. .|+..+ -+++.++ .+.+++.+.+ +++.+..|+.++...
T Consensus 78 ~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~--~~~v~~~--~d~~~l~~~~~~~l~~~~gV~~~~t~ 140 (151)
T 2dbb_A 78 VPSDADKVISEISDIEYVKSVEKG----VGRYNI--IVRLLLP--KDIKDAENLISEFLQRIKNAENVEVI 140 (151)
T ss_dssp SHHHHHHHHHHHTTCTTEEEEEEE----ESSCSE--EEEEEEE--SSHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred CCCCHHHHHHHHHcCCCeEEEeEe----cCCCCE--EEEEEEc--CCHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 445667888888889998766522 233333 4455542 2445555555 335455667655443
No 21
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=39.80 E-value=83 Score=23.58 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEe
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
++..+++.+.+.+.|+|..++. ..|+..+. +++.+ .+.+++.+.+.+++.+.++.++...
T Consensus 76 ~~~~~~~~~~l~~~peV~~~~~----vtG~~D~~--l~v~~---~d~~~l~~~l~~~l~~~~V~~~~T~ 135 (162)
T 3i4p_A 76 IEWLKRFSEVVSEFPEVVEFYR----MSGDVDYL--LRVVV---PDIAAYDAFYKRMIAKIEIRDVSSA 135 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE----CCSSCSEE--EEEEE---SSHHHHHHHHHHHHHHCCCSEEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEeee----cCCCCCEE--EEEEE---CCHHHHHHHHHHHhhcCCeeEEEEE
Confidence 3567888888889999976653 12333433 44444 3455666666555443226655443
No 22
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=38.55 E-value=73 Score=22.96 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=36.7
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHH-HhhhccCCCCeeEEee
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFV-HGLYHDLGVQDLTVQI 280 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i-~~i~~~~~i~~vti~~ 280 (283)
++..+++.+.+.+.|+|..++.. .|+..+. +++.. .+.+++.+.+ +++.+..|+.++...+
T Consensus 74 ~~~~~~~~~~l~~~~~v~~~~~~----~G~~d~~--~~v~~---~d~~~l~~~~~~~l~~~~gV~~~~t~i 135 (141)
T 1i1g_A 74 PEKLFEVAEKLKEYDFVKELYLS----SGDHMIM--AVIWA---KDGEDLAEIISNKIGKIEGVTKVCPAI 135 (141)
T ss_dssp GGGHHHHHHHHHHSTTEEEECCC----SSSSSEE--EEEEE---SSHHHHHHHHHHTTTTSTTEEEEEEEE
T ss_pred chhHHHHHHHHhcCCCeEEEEEe----cCCCCEE--EEEEE---CCHHHHHHHHHHHhhcCCCEeEEEEEE
Confidence 35677888888889998776532 2333333 34433 3456666666 4455557777665543
No 23
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=34.61 E-value=22 Score=23.11 Aligned_cols=35 Identities=17% Similarity=0.523 Sum_probs=24.4
Q ss_pred EEEEEEccCCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 246 SLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 246 ~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
.+.+...++..++++.+.+.+++++.|.+++.+.+
T Consensus 51 qitisaendeqakelleliarllqklgykdinvrv 85 (96)
T 2jvf_A 51 QITISAENDEQAKELLELIARLLQKLGYKDINVRV 85 (96)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred EEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 55565555566778888888888877777766654
No 24
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=33.87 E-value=1.1e+02 Score=20.85 Aligned_cols=67 Identities=9% Similarity=0.097 Sum_probs=48.5
Q ss_pred CCChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccC-C-CchhHHHHHHhhhccCCCCeeEEe
Q 023355 208 SIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKG-V-DDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 208 ~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~-~-~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
+.|.+.+++-++.+.. +|. ..+..+.-.++.+-..+.+.+.++.+ . ..+++.+.++++ + +++++.|.
T Consensus 18 etDl~~L~~~vk~~~~-~gl-~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~lee~i~~~--e-~VqSvdV~ 86 (91)
T 2yy3_A 18 DVNLDELEEKLKKVIP-EKY-GLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEKFEEV--E-NVESAEVE 86 (91)
T ss_dssp TSCHHHHHHHHHHHSC-TTC-EEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHHHHHHHHS--T-TEEEEEEE
T ss_pred CCCHHHHHHHHHHhcc-CCc-EEeeeeEEEEEcceeeEEEEEEEECCCccccHHHHHHHhcC--C-CceEEEEE
Confidence 4666777777777644 555 56788889999999899999988765 3 577787777665 2 47777654
No 25
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=33.10 E-value=1.2e+02 Score=23.39 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhccCCCcccccccEEEeec-------CCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 211 SSALSKCWRQIVSREDVTEVSQARFWELV-------PGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 211 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~-------~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
+..+.++.+.+.+ .++ +|.+++....+ .+.+.+.+.+..+++.+..++++...++.++++++ +.+|.
T Consensus 104 ~Gil~~v~~~l~~-~~~-nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~ 177 (192)
T 1u8s_A 104 LGLTEKFTQFFAQ-RQI-GMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALDVQ-GSLNF 177 (192)
T ss_dssp TTHHHHHHHHHHH-TTC-CEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHTCE-EEEEE
T ss_pred ccHHHHHHHHHHH-cCC-cHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCce-EEEEE
Confidence 4677777776654 344 56666666542 34566677777665566778888888887777754 55543
No 26
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=31.66 E-value=1.3e+02 Score=22.85 Aligned_cols=55 Identities=7% Similarity=0.111 Sum_probs=32.7
Q ss_pred HHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHH-hhhccCCCCeeE
Q 023355 213 ALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVH-GLYHDLGVQDLT 277 (283)
Q Consensus 213 ~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~-~i~~~~~i~~vt 277 (283)
..+++.+.+.+.|+|..++ ..|+..+.+.+.. .+.+++.+.+. ++.+..|+.++.
T Consensus 96 ~~~~~~~~l~~~peV~~~~-----vtG~~dll~~v~~-----~d~~~l~~~l~~~l~~~~gV~~~~ 151 (171)
T 2ia0_A 96 YISYISSTLSALPGVLFVA-----KSGEDKIIALVGK-----NNKDELVKFIEENITSIPNLKHIQ 151 (171)
T ss_dssp HHHHHHHHHHTSTTEEEEE-----EETTTEEEEEEEE-----SSTTHHHHHHHHHTTTSTTEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEE-----EcCCCCEEEEEEE-----CCHHHHHHHHHHHhhcCCCeeEEE
Confidence 6778888888899886654 2244444444333 34455666663 455556776555
No 27
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=29.65 E-value=1.4e+02 Score=22.12 Aligned_cols=58 Identities=17% Similarity=0.062 Sum_probs=32.8
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccCCCchhHHHHHHh-hhccCCCCeeEE
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKGVDDRPILQFVHG-LYHDLGVQDLTV 278 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~-i~~~~~i~~vti 278 (283)
+..+++.+.+.+.|+|..++. ..|+..+.+ ++.. .+.+++.+.+.+ +.+..|+.++..
T Consensus 83 ~~~~~~~~~l~~~peV~~~~~----vtG~~d~~~--~v~~---~d~~~l~~~l~~~l~~~~gV~~~~t 141 (162)
T 2p5v_A 83 DAREDFAASVRKWPEVLSCFA----LTGETDYLL--QAFF---TDMNAFSHFVLDTLLSHHGVQDAQS 141 (162)
T ss_dssp THHHHHHHHHTTCTTEEEEEE----ESSSCSEEE--EEEE---SSHHHHHHHHHHTTTTSTTEEEEEE
T ss_pred hHHHHHHHHHhcChhhhEeee----ecCCCCEEE--EEEE---CCHHHHHHHHHHHhhcCCCeeEEEE
Confidence 347778888888998876542 113333443 4433 355566666644 444466655443
No 28
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=26.03 E-value=1.3e+02 Score=19.07 Aligned_cols=39 Identities=5% Similarity=0.048 Sum_probs=22.4
Q ss_pred EEEeecCCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCC
Q 023355 234 RFWELVPGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQ 274 (283)
Q Consensus 234 ~~~~~~~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~ 274 (283)
-.+.++++..- +.+.=-|....+++.++.+++.++|+++
T Consensus 33 vtytldgndle--iritgvpeqvrkelakeaerlakefnit 71 (85)
T 2kl8_A 33 VTYTLDGNDLE--IRITGVPEQVRKELAKEAERLAKEFNIT 71 (85)
T ss_dssp EEEEECSSCEE--EEEESCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred EEEEecCCeeE--EEEecChHHHHHHHHHHHHHHHHhcCeE
Confidence 34677776533 2222112222456777778888889876
No 29
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=25.48 E-value=1.1e+02 Score=19.60 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=20.0
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 023355 57 KPDFAYTYGYKRLEVLSAFTNALFLLFMSFSLAVE 91 (283)
Q Consensus 57 ~~d~~~~~G~~r~e~l~~~~~~~~l~~~~~~i~~~ 91 (283)
..+..|.|-|+.+..- +++.+.+++++|+.++.+
T Consensus 5 ~e~dpF~YDY~tLRig-GLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 5 DKGSPFYYDWESLQLG-GLIFGGLLCIAGIALALS 38 (67)
T ss_dssp STTSGGGGGGHHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred ccCCCcccchHHheec-chhhHHHHHHHHHHHHHc
Confidence 3456677777777654 455555555555555433
No 30
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=23.78 E-value=1.1e+02 Score=23.65 Aligned_cols=67 Identities=4% Similarity=0.021 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHhccCCCcccccccEEEeec-----CCeEEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 210 PSSALSKCWRQIVSREDVTEVSQARFWELV-----PGHVVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 210 ~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~-----~~~~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
.+..+.++.+.+.+ .|+ +|.+++....+ .+.+.+.+.+.++++.+ .++++...++.++++++ +.+|.
T Consensus 103 rpGiva~Vt~~La~-~g~-nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~a~~l~~d-i~~~~ 174 (195)
T 2nyi_A 103 SEGIVEAVTAVLAK-KGA-NIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRVEEEFGVD-IDLEE 174 (195)
T ss_dssp CTTHHHHHHHHHHH-TTC-EEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHHHHHHTCE-EEEEE
T ss_pred CcCHHHHHHHHHHH-cCC-CEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHHHHHcCeE-EEEEE
Confidence 44677777766654 355 67777777654 24556677776665444 67777777777777654 55543
No 31
>2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Escherichia coli} SCOP: d.58.4.12
Probab=22.95 E-value=52 Score=23.92 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=37.4
Q ss_pred hHHHHHHHHhccCCCcccccccEEEeecCCe-EEEEEEEEEccCCCchhHHHHHHhhhccCCCCeeEEee
Q 023355 212 SALSKCWRQIVSREDVTEVSQARFWELVPGH-VVGSLSLQVNKGVDDRPILQFVHGLYHDLGVQDLTVQI 280 (283)
Q Consensus 212 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~-~~~~i~i~v~~~~~~~~i~~~i~~i~~~~~i~~vti~~ 280 (283)
+..++..+.+.+.||..+ ++|..+++. -..-+++- +...+++.-.+.-++.++++|++++..++
T Consensus 43 ~~f~~lA~si~~epGLIw----Kiwtene~~~eAGGIYLF-e~~aaAEaYl~~h~aRl~~~Gi~~i~~ki 107 (123)
T 2asy_A 43 EQLKPLAESINQEPGFLW----KVWTESEKNHEAGGIYLF-TDEKSALAYLEKHTARLKNLGVEEVVAKV 107 (123)
T ss_dssp TTHHHHHHHHTCCCCBSC----CCCBCBTTTTEEEEEEEE-SCHHHHHHHHHHHHHHHHHHSSSCCBCCB
T ss_pred HHHHHHHHHHhcCCCcEE----EEEEEcCCCCccceEEEe-CCHHHHHHHHHHHHHHHHHcCCcceeEEE
Confidence 355667778888999853 556665544 56777774 33333333333334456667777665443
No 32
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=22.24 E-value=1.8e+02 Score=19.23 Aligned_cols=30 Identities=17% Similarity=0.049 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhHHHHH
Q 023355 188 MLVMPLFKVTGGILLQMAPPSIPSSALSKC 217 (283)
Q Consensus 188 ~~~~~~~~~s~~~Ll~~~p~~~~~~~~~~i 217 (283)
..+++.+|++....-+...+....+.+++.
T Consensus 34 Gk~ir~fK~~~~~~~~e~~~~~~~~el~~~ 63 (78)
T 2l16_A 34 GRTLLEFKSATKSLVSGDEKEEKSAELTAV 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHCCC-----------
T ss_pred HHHHHHHHHHHHHhHhhhhHHhhHHHHHHH
Confidence 456778888888776654333333444443
No 33
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=22.22 E-value=3.8e+02 Score=23.07 Aligned_cols=47 Identities=19% Similarity=0.132 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 023355 108 IVSAVTNLLVNLIGVWFFRNYARINLVYRNPEDMNYHSVCLHVLADSIRSAGLI 161 (283)
Q Consensus 108 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~D~l~s~~vl 161 (283)
.++.+++++.|++..+...+..+ .+++.-.-..--..+|.+..+..+
T Consensus 29 ~~i~~~gi~gN~lvi~~~~~~~~-------~~~~~~~~l~~La~aDll~~~~~~ 75 (488)
T 3eml_A 29 LAIAVLAILGNVLVCWAVWLNSN-------LQNVTNYFVVSLAAADIAVGVLAI 75 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGG-------GCSSHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhhhheeeccc-------cCChHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778777766654422 122222222233467766654443
No 34
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=21.76 E-value=1.9e+02 Score=19.55 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=47.2
Q ss_pred CCChhHHHHHHHHhccCCCcccccccEEEeecCCeEEEEEEEEEccC-CCchhHHHHHHhhhccCCCCeeEEe
Q 023355 208 SIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVNKG-VDDRPILQFVHGLYHDLGVQDLTVQ 279 (283)
Q Consensus 208 ~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~~i~~i~~~~~i~~vti~ 279 (283)
+.|.+.+++-++.+.. +|. .....+.-.++.+-..+.+.+.++.+ ...+++.+.++++ + +++++.|.
T Consensus 16 etDl~~L~~~vk~~~~-~gl-~w~~~k~~piafGlk~L~i~~vveD~~~~td~lee~i~~~-e--~Vqsvdv~ 83 (89)
T 1gh8_A 16 DVDLEALKKEIQERIP-EGT-ELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEESLSGI-E--GVSNIEVT 83 (89)
T ss_dssp CCCHHHHHHHHHHHSC-TTS-EECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHHHTTS-C--SSEEEEEE
T ss_pred CCCHHHHHHHHHHhcc-CCc-EEeeeeEEEEEcceeeEEEEEEEEcCCcChHHHHHHHhcc-C--CccEEEEE
Confidence 4666777777777644 555 56788889999999899999988654 3567777776554 2 47777654
No 35
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=20.60 E-value=4.4e+02 Score=23.21 Aligned_cols=8 Identities=0% Similarity=-0.143 Sum_probs=3.0
Q ss_pred CCCCchhH
Q 023355 62 YTYGYKRL 69 (283)
Q Consensus 62 ~~~G~~r~ 69 (283)
|..+.++.
T Consensus 403 ~~~~~~~~ 410 (511)
T 4djk_A 403 FNIPGGKG 410 (511)
T ss_dssp CCCSSTTH
T ss_pred eecCCCch
Confidence 33333343
Done!