BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023356
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 82
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 45/72 (62%)
Query: 210 KCPMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 269
+ PM GTFYR P+P AF CI+EAMK+MN+IEAD+SGT+ IL E G
Sbjct: 10 RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 69
Query: 270 KSVSVDTPLLVI 281
+ V D PL+VI
Sbjct: 70 QPVEFDEPLVVI 81
>pdb|1BDO|A Chain A, Structure Of The Biotinyl Domain Of Acetyl-Coenzyme A
Carboxylase Determined By Mad Phasing
pdb|2BDO|A Chain A, Solution Structure Of Holo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 80
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 45/72 (62%)
Query: 210 KCPMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 269
+ PM GTFYR P+P AF CI+EAMK+MN+IEAD+SGT+ IL E G
Sbjct: 8 RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 67
Query: 270 KSVSVDTPLLVI 281
+ V D PL+VI
Sbjct: 68 QPVEFDEPLVVI 79
>pdb|1A6X|A Chain A, Structure Of The Apo-Biotin Carboxyl Carrier Protein (Apo-
Bccp87) Of Escherichia Coli Acetyl-Coa Carboxylase, Nmr,
49 Structures
Length = 87
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 45/72 (62%)
Query: 210 KCPMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 269
+ PM GTFYR P+P AF CI+EAMK+MN+IEAD+SGT+ IL E G
Sbjct: 15 RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 74
Query: 270 KSVSVDTPLLVI 281
+ V D PL+VI
Sbjct: 75 QPVEFDEPLVVI 86
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 242 CIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVD 275
C IEAMK+ N + A++ G +A+I A G S++VD
Sbjct: 641 CTIEAMKMENILRAEKKGVVAKINASAGNSLAVD 674
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 242 CIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 279
++EAMK+ NEI + + G + IL ++G++V PL+
Sbjct: 34 LVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLI 71
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 32.7 bits (73), Expect = 0.22, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 244 IEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLV 280
IEAMK+ I A++ GTIAE+L + G + L V
Sbjct: 1126 IEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAV 1162
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 32.7 bits (73), Expect = 0.22, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 244 IEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLV 280
IEAMK+ I A++ GTIAE+L + G + L V
Sbjct: 1126 IEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAV 1162
>pdb|2IVF|A Chain A, Ethylbenzene Dehydrogenase From Aromatoleum Aromaticum
Length = 976
Score = 31.2 bits (69), Expect = 0.63, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 10/43 (23%)
Query: 124 VDSRDIMELQMKQ----------SDCELIVRKKEALQPPECIV 156
++S+D EL +K +DCE++VR +QP +CIV
Sbjct: 876 MNSKDAAELGIKDGDMAKLFNDFADCEIMVRTAPNVQPKQCIV 918
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 242 CIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLV 280
C+IEAMK+ N + A ++GT+ + + G +V + LLV
Sbjct: 54 CVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVG-EGDLLV 91
>pdb|3RGB|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
pdb|3RGB|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
pdb|3RGB|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
Length = 414
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 249 LMNEIEADQSGTIAEILAEDGKSVSVDTPL 278
L +++ D +G ++LAEDG SVS ++PL
Sbjct: 325 LDSDVYKDTTGYPEDLLAEDGLSVSDNSPL 354
>pdb|1YEW|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
pdb|1YEW|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
pdb|1YEW|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
Length = 382
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 249 LMNEIEADQSGTIAEILAEDGKSVSVDTPL 278
L +++ D +G ++LAEDG SVS ++PL
Sbjct: 293 LDSDVYKDTTGYPEDLLAEDGLSVSDNSPL 322
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 243 IIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 279
++EAMK+ + I A +G + + +G+ V TPL+
Sbjct: 612 VLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLV 648
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,711,610
Number of Sequences: 62578
Number of extensions: 96910
Number of successful extensions: 270
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 14
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)