Query 023356
Match_columns 283
No_of_seqs 238 out of 2006
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02983 biotin carboxyl carri 100.0 3.5E-51 7.6E-56 375.8 25.8 260 1-283 1-274 (274)
2 TIGR00531 BCCP acetyl-CoA carb 100.0 2.7E-31 5.9E-36 228.7 18.4 156 112-282 1-156 (156)
3 PRK06302 acetyl-CoA carboxylas 100.0 6.1E-31 1.3E-35 226.2 18.1 155 112-282 1-155 (155)
4 COG0511 AccB Biotin carboxyl c 99.9 1.7E-27 3.6E-32 201.8 13.2 140 117-283 1-140 (140)
5 PF00364 Biotin_lipoyl: Biotin 99.7 1.6E-17 3.5E-22 126.0 5.2 73 208-281 2-74 (74)
6 PRK05889 putative acetyl-CoA c 99.7 8.5E-17 1.8E-21 120.9 8.7 68 208-282 4-71 (71)
7 PRK07051 hypothetical protein; 99.7 2.2E-16 4.7E-21 121.6 9.7 76 207-282 4-79 (80)
8 PRK06549 acetyl-CoA carboxylas 99.7 9.7E-16 2.1E-20 129.0 11.7 71 205-282 60-130 (130)
9 PRK08225 acetyl-CoA carboxylas 99.6 5.1E-16 1.1E-20 115.9 8.2 68 208-282 3-70 (70)
10 PRK06748 hypothetical protein; 99.6 7.3E-16 1.6E-20 120.7 8.7 69 207-282 5-74 (83)
11 PRK05641 putative acetyl-CoA c 99.6 5.9E-15 1.3E-19 127.3 10.9 70 205-281 83-152 (153)
12 cd06850 biotinyl_domain The bi 99.5 5.8E-14 1.2E-18 101.3 8.5 67 208-281 1-67 (67)
13 PRK14042 pyruvate carboxylase 99.4 5E-13 1.1E-17 136.3 9.3 71 205-282 524-594 (596)
14 PRK14875 acetoin dehydrogenase 99.4 2.2E-12 4.7E-17 119.7 8.5 64 213-283 15-78 (371)
15 PRK09282 pyruvate carboxylase 99.3 2.3E-12 4.9E-17 131.5 9.1 73 204-283 520-592 (592)
16 cd06663 Biotinyl_lipoyl_domain 99.3 6.7E-12 1.4E-16 93.6 8.7 61 214-281 13-73 (73)
17 TIGR01108 oadA oxaloacetate de 99.3 2.7E-12 5.8E-17 130.8 7.9 67 205-278 516-582 (582)
18 PRK14040 oxaloacetate decarbox 99.3 4E-12 8.6E-17 129.8 9.0 70 206-282 524-593 (593)
19 PLN02226 2-oxoglutarate dehydr 99.3 3.6E-12 7.8E-17 126.6 8.3 62 214-282 105-166 (463)
20 TIGR01235 pyruv_carbox pyruvat 99.3 7.3E-12 1.6E-16 135.7 9.0 72 204-282 1072-1143(1143)
21 TIGR02712 urea_carbox urea car 99.3 7.7E-12 1.7E-16 136.2 9.1 72 204-282 1130-1201(1201)
22 COG4770 Acetyl/propionyl-CoA c 99.3 8.5E-12 1.8E-16 125.4 8.6 72 205-283 574-645 (645)
23 PTZ00144 dihydrolipoamide succ 99.3 1.2E-11 2.7E-16 121.6 8.5 62 214-282 58-119 (418)
24 PRK12999 pyruvate carboxylase; 99.3 1.3E-11 2.7E-16 134.0 8.9 72 205-283 1075-1146(1146)
25 COG0508 AceF Pyruvate/2-oxoglu 99.2 2.5E-11 5.5E-16 118.8 7.7 62 214-282 16-77 (404)
26 PRK05704 dihydrolipoamide succ 99.2 5E-11 1.1E-15 116.9 8.4 62 214-282 16-77 (407)
27 COG1038 PycA Pyruvate carboxyl 99.2 2.6E-11 5.7E-16 125.6 6.5 73 203-282 1076-1148(1149)
28 TIGR01347 sucB 2-oxoglutarate 99.1 1.6E-10 3.5E-15 113.2 8.5 62 214-282 14-75 (403)
29 TIGR02927 SucB_Actino 2-oxoglu 99.1 2.6E-10 5.7E-15 116.5 8.0 62 214-282 149-210 (590)
30 PRK11854 aceF pyruvate dehydro 99.1 2.9E-10 6.3E-15 116.9 7.7 62 214-282 218-279 (633)
31 PRK11854 aceF pyruvate dehydro 99.0 5.8E-10 1.3E-14 114.7 8.3 62 214-282 14-75 (633)
32 TIGR01348 PDHac_trf_long pyruv 99.0 9.2E-10 2E-14 111.6 7.5 74 207-282 117-190 (546)
33 PLN02528 2-oxoisovalerate dehy 98.9 2.1E-09 4.6E-14 105.7 8.4 61 215-282 13-73 (416)
34 PRK11855 dihydrolipoamide acet 98.9 2.2E-09 4.7E-14 108.7 7.9 73 208-282 121-193 (547)
35 KOG0559 Dihydrolipoamide succi 98.9 5.5E-10 1.2E-14 107.6 3.2 57 227-283 92-148 (457)
36 KOG0369 Pyruvate carboxylase [ 98.9 2.8E-09 6E-14 109.3 7.3 73 204-283 1104-1176(1176)
37 cd06849 lipoyl_domain Lipoyl d 98.9 1.3E-08 2.9E-13 72.0 8.3 64 211-281 11-74 (74)
38 TIGR01348 PDHac_trf_long pyruv 98.8 6.8E-09 1.5E-13 105.3 8.4 64 212-282 11-74 (546)
39 PRK11855 dihydrolipoamide acet 98.8 1.1E-08 2.3E-13 103.7 8.3 62 214-282 15-76 (547)
40 PLN02744 dihydrolipoyllysine-r 98.8 9.3E-09 2E-13 104.2 7.6 61 214-281 126-187 (539)
41 PRK11856 branched-chain alpha- 98.8 1.3E-08 2.9E-13 99.3 8.4 63 213-282 15-77 (411)
42 TIGR01349 PDHac_trf_mito pyruv 98.8 1.1E-08 2.5E-13 101.1 7.8 62 214-282 13-75 (435)
43 KOG0238 3-Methylcrotonyl-CoA c 98.8 5.9E-09 1.3E-13 104.3 4.7 70 206-282 601-670 (670)
44 KOG0557 Dihydrolipoamide acety 98.7 1.5E-08 3.1E-13 100.3 5.9 62 214-282 52-114 (470)
45 PRK11892 pyruvate dehydrogenas 98.7 3.8E-08 8.2E-13 98.3 7.8 62 214-282 16-78 (464)
46 TIGR02927 SucB_Actino 2-oxoglu 98.7 3.7E-08 8.1E-13 100.8 7.5 62 214-282 16-77 (590)
47 PRK01202 glycine cleavage syst 98.4 5E-07 1.1E-11 75.7 6.6 56 228-283 44-106 (127)
48 cd06848 GCS_H Glycine cleavage 98.3 9.1E-07 2E-11 70.2 5.7 55 211-271 25-79 (96)
49 KOG0368 Acetyl-CoA carboxylase 98.2 1.9E-06 4E-11 94.5 6.5 71 204-282 683-753 (2196)
50 PRK09783 copper/silver efflux 98.1 6.8E-06 1.5E-10 80.5 8.4 70 206-282 123-241 (409)
51 TIGR00998 8a0101 efflux pump m 98.1 6.4E-06 1.4E-10 77.0 6.9 33 251-283 205-237 (334)
52 TIGR03309 matur_yqeB selenium- 98.0 1.6E-05 3.4E-10 74.2 8.2 65 206-283 164-228 (256)
53 TIGR03077 not_gcvH glycine cle 98.0 7.6E-06 1.6E-10 67.3 5.4 39 228-266 37-75 (110)
54 KOG0558 Dihydrolipoamide trans 98.0 1.9E-06 4.2E-11 83.3 2.1 57 226-282 83-139 (474)
55 TIGR00527 gcvH glycine cleavag 98.0 6.8E-06 1.5E-10 69.0 4.7 50 219-268 31-83 (127)
56 TIGR01730 RND_mfp RND family e 98.0 8.7E-06 1.9E-10 74.8 5.4 69 207-282 27-166 (322)
57 PRK10476 multidrug resistance 98.0 1.8E-05 3.8E-10 75.2 6.8 34 250-283 208-241 (346)
58 PRK00624 glycine cleavage syst 97.9 1.6E-05 3.6E-10 65.8 5.5 45 228-272 39-86 (114)
59 PRK13380 glycine cleavage syst 97.9 1.6E-05 3.5E-10 68.2 5.1 56 208-269 37-92 (144)
60 PRK10559 p-hydroxybenzoic acid 97.8 3.9E-05 8.5E-10 72.5 6.7 69 207-282 48-186 (310)
61 PRK03598 putative efflux pump 97.8 4E-05 8.7E-10 72.3 6.2 32 251-282 204-235 (331)
62 PRK09578 periplasmic multidrug 97.7 5.1E-05 1.1E-09 73.2 6.2 70 206-282 63-205 (385)
63 PRK15136 multidrug efflux syst 97.7 5.1E-05 1.1E-09 73.9 6.2 33 251-283 216-248 (390)
64 PF13533 Biotin_lipoyl_2: Biot 97.7 9.4E-05 2E-09 52.3 4.9 33 251-283 3-35 (50)
65 PRK09859 multidrug efflux syst 97.6 0.00012 2.7E-09 70.6 6.5 69 206-281 61-202 (385)
66 PRK15030 multidrug efflux syst 97.6 0.00012 2.6E-09 71.2 6.3 69 206-281 65-206 (397)
67 PRK11578 macrolide transporter 97.5 0.00018 4E-09 68.9 6.3 34 206-246 61-94 (370)
68 cd06253 M14_ASTE_ASPA_like_3 A 97.5 0.0004 8.7E-09 65.6 8.1 66 206-281 229-297 (298)
69 PF12700 HlyD_2: HlyD family s 97.4 0.00013 2.8E-09 67.3 4.1 33 207-247 22-54 (328)
70 cd06252 M14_ASTE_ASPA_like_2 A 97.4 0.00057 1.2E-08 65.0 8.1 66 207-282 245-314 (316)
71 PRK12784 hypothetical protein; 97.4 0.00077 1.7E-08 52.6 7.0 68 208-282 7-75 (84)
72 PF13533 Biotin_lipoyl_2: Biot 97.4 0.00017 3.8E-09 50.9 3.2 36 208-250 4-39 (50)
73 PRK11556 multidrug efflux syst 97.4 0.00029 6.3E-09 69.2 5.8 70 205-281 86-228 (415)
74 cd06251 M14_ASTE_ASPA_like_1 A 97.3 0.0012 2.5E-08 62.0 8.3 65 207-281 220-286 (287)
75 TIGR02994 ectoine_eutE ectoine 97.2 0.0012 2.5E-08 63.5 8.0 65 207-281 256-324 (325)
76 TIGR02971 heterocyst_DevB ABC 97.2 0.00087 1.9E-08 62.8 6.6 34 207-247 14-50 (327)
77 PF01597 GCV_H: Glycine cleava 97.1 0.0011 2.3E-08 55.2 5.8 39 228-266 38-76 (122)
78 PRK05889 putative acetyl-CoA c 97.1 0.00078 1.7E-08 50.4 4.3 33 250-282 2-34 (71)
79 cd06250 M14_PaAOTO_like An unc 97.1 0.0016 3.5E-08 63.2 7.6 66 206-281 289-358 (359)
80 COG0509 GcvH Glycine cleavage 97.0 0.00094 2E-08 56.7 4.4 41 227-267 45-85 (131)
81 cd06254 M14_ASTE_ASPA_like_4 A 96.9 0.0027 5.8E-08 59.5 6.9 64 206-279 223-288 (288)
82 PF13375 RnfC_N: RnfC Barrel s 96.8 0.0015 3.2E-08 53.0 4.1 39 227-266 44-82 (101)
83 TIGR01843 type_I_hlyD type I s 96.8 0.0033 7.1E-08 60.1 7.0 32 252-283 273-305 (423)
84 PRK08225 acetyl-CoA carboxylas 96.7 0.0027 5.9E-08 47.1 4.4 33 250-282 1-33 (70)
85 PRK06748 hypothetical protein; 96.6 0.0037 8.1E-08 49.2 5.0 33 250-282 4-36 (83)
86 COG3608 Predicted deacylase [G 96.5 0.0071 1.5E-07 58.5 6.8 66 206-281 256-324 (331)
87 cd06850 biotinyl_domain The bi 96.4 0.0043 9.3E-08 44.2 3.8 31 252-282 1-31 (67)
88 COG0511 AccB Biotin carboxyl c 95.9 0.0096 2.1E-07 50.6 4.1 34 249-282 69-102 (140)
89 PRK09439 PTS system glucose-sp 95.8 0.022 4.8E-07 50.2 6.0 65 207-282 21-124 (169)
90 cd06255 M14_ASTE_ASPA_like_5 A 95.8 0.026 5.6E-07 53.2 6.7 51 206-264 231-283 (293)
91 PRK06549 acetyl-CoA carboxylas 95.7 0.015 3.2E-07 49.4 4.5 33 250-282 61-93 (130)
92 PF00364 Biotin_lipoyl: Biotin 95.7 0.014 2.9E-07 44.1 3.7 32 251-282 1-38 (74)
93 PRK10476 multidrug resistance 95.7 0.019 4.1E-07 54.6 5.6 40 242-283 42-81 (346)
94 PF04952 AstE_AspA: Succinylgl 95.4 0.041 8.9E-07 50.8 6.5 66 207-282 221-290 (292)
95 PRK05641 putative acetyl-CoA c 95.3 0.023 4.9E-07 49.4 4.4 32 251-282 85-116 (153)
96 TIGR00998 8a0101 efflux pump m 95.3 0.023 5E-07 53.2 4.7 35 249-283 41-75 (334)
97 TIGR00830 PTBA PTS system, glu 95.3 0.051 1.1E-06 45.5 6.2 20 263-282 83-102 (121)
98 cd00210 PTS_IIA_glc PTS_IIA, P 95.3 0.056 1.2E-06 45.4 6.5 20 263-282 83-102 (124)
99 PRK09859 multidrug efflux syst 95.1 0.037 8E-07 53.6 5.5 53 230-283 42-94 (385)
100 TIGR01000 bacteriocin_acc bact 95.1 0.043 9.4E-07 54.5 6.0 42 242-283 51-92 (457)
101 PRK11556 multidrug efflux syst 95.1 0.04 8.6E-07 54.2 5.7 54 229-283 67-120 (415)
102 PRK11578 macrolide transporter 95.1 0.045 9.7E-07 52.5 5.9 43 240-283 52-94 (370)
103 PRK09578 periplasmic multidrug 95.0 0.039 8.5E-07 53.3 5.5 44 239-283 53-96 (385)
104 TIGR01843 type_I_hlyD type I s 95.0 0.041 8.8E-07 52.6 5.4 41 242-282 35-75 (423)
105 PRK15136 multidrug efflux syst 95.0 0.034 7.4E-07 54.3 4.9 34 250-283 61-94 (390)
106 TIGR01936 nqrA NADH:ubiquinone 94.8 0.033 7E-07 56.0 4.3 39 227-266 43-81 (447)
107 PF13437 HlyD_3: HlyD family s 94.8 0.035 7.6E-07 43.5 3.6 33 208-247 1-33 (105)
108 PRK03598 putative efflux pump 94.8 0.059 1.3E-06 50.9 5.8 41 241-283 36-76 (331)
109 PF00358 PTS_EIIA_1: phosphoen 94.8 0.068 1.5E-06 45.4 5.6 65 207-282 3-106 (132)
110 COG1566 EmrA Multidrug resista 94.7 0.042 9.1E-07 53.7 4.6 34 250-283 53-86 (352)
111 TIGR03794 NHPM_micro_HlyD NHPM 94.6 0.062 1.4E-06 52.6 5.7 41 243-283 51-91 (421)
112 PRK15030 multidrug efflux syst 94.5 0.067 1.5E-06 52.1 5.8 42 241-283 57-98 (397)
113 PRK07051 hypothetical protein; 94.5 0.048 1E-06 41.8 3.7 34 249-282 2-42 (80)
114 PRK10559 p-hydroxybenzoic acid 94.1 0.072 1.6E-06 50.4 4.7 33 251-283 48-80 (310)
115 PRK05352 Na(+)-translocating N 94.0 0.072 1.6E-06 53.5 4.8 39 227-266 44-82 (448)
116 PF09891 DUF2118: Uncharacteri 93.8 0.095 2E-06 45.6 4.6 39 227-265 94-133 (150)
117 TIGR01945 rnfC electron transp 93.8 0.063 1.4E-06 53.4 3.9 39 226-265 44-82 (435)
118 PF05896 NQRA: Na(+)-transloca 93.7 0.12 2.6E-06 48.6 5.3 39 227-268 43-83 (257)
119 COG2190 NagE Phosphotransferas 93.7 0.13 2.9E-06 45.0 5.2 65 207-282 6-109 (156)
120 PRK09824 PTS system beta-gluco 92.9 0.2 4.4E-06 52.3 6.2 64 208-282 480-582 (627)
121 COG0845 AcrA Membrane-fusion p 92.8 0.24 5.2E-06 44.9 5.8 45 238-283 55-99 (372)
122 KOG3373 Glycine cleavage syste 92.8 0.075 1.6E-06 46.9 2.4 46 224-269 80-128 (172)
123 COG4656 RnfC Predicted NADH:ub 92.6 0.092 2E-06 53.6 3.1 37 227-265 47-83 (529)
124 TIGR01235 pyruv_carbox pyruvat 92.6 0.14 3.1E-06 56.8 4.8 68 207-282 1039-1106(1143)
125 PF00529 HlyD: HlyD family sec 92.4 0.085 1.8E-06 48.1 2.4 32 208-246 3-34 (305)
126 PRK05035 electron transport co 92.3 0.16 3.4E-06 53.8 4.4 38 227-265 51-88 (695)
127 TIGR01995 PTS-II-ABC-beta PTS 92.2 0.31 6.8E-06 50.7 6.5 64 208-282 464-566 (610)
128 PRK09783 copper/silver efflux 92.2 0.25 5.5E-06 48.6 5.5 43 240-282 112-156 (409)
129 TIGR00999 8a0102 Membrane Fusi 92.2 0.19 4.2E-06 45.2 4.3 32 251-282 89-120 (265)
130 PRK10255 PTS system N-acetyl g 92.1 0.35 7.7E-06 50.8 6.7 66 206-282 498-602 (648)
131 PRK14042 pyruvate carboxylase 91.2 0.25 5.3E-06 51.5 4.3 32 251-282 526-557 (596)
132 PRK09439 PTS system glucose-sp 90.8 0.68 1.5E-05 40.9 6.2 55 227-282 106-168 (169)
133 PRK05305 phosphatidylserine de 90.8 0.41 8.9E-06 43.1 4.9 48 228-279 155-202 (206)
134 TIGR03794 NHPM_micro_HlyD NHPM 90.7 0.29 6.3E-06 47.9 4.2 32 251-282 254-285 (421)
135 TIGR01995 PTS-II-ABC-beta PTS 90.6 0.59 1.3E-05 48.7 6.4 76 206-281 499-609 (610)
136 TIGR00531 BCCP acetyl-CoA carb 90.5 0.22 4.8E-06 43.2 2.8 33 206-245 124-156 (156)
137 TIGR00164 PS_decarb_rel phosph 90.4 0.48 1E-05 42.1 4.9 48 228-279 135-182 (189)
138 PLN02983 biotin carboxyl carri 90.3 0.34 7.4E-06 45.9 4.0 30 253-282 200-236 (274)
139 PRK06302 acetyl-CoA carboxylas 90.1 0.26 5.6E-06 42.6 2.9 33 206-245 123-155 (155)
140 TIGR01108 oadA oxaloacetate de 89.8 0.37 8.1E-06 50.0 4.3 33 250-282 517-549 (582)
141 PRK14040 oxaloacetate decarbox 89.6 0.4 8.6E-06 49.9 4.3 33 250-282 524-556 (593)
142 COG1726 NqrA Na+-transporting 89.6 0.49 1.1E-05 46.7 4.7 39 227-268 43-83 (447)
143 PRK14875 acetoin dehydrogenase 89.4 0.38 8.2E-06 44.7 3.6 35 207-248 46-80 (371)
144 PRK09824 PTS system beta-gluco 89.4 0.85 1.8E-05 47.9 6.5 76 206-281 515-625 (627)
145 PF07831 PYNP_C: Pyrimidine nu 88.8 0.57 1.2E-05 35.9 3.6 29 211-248 29-57 (75)
146 PRK09282 pyruvate carboxylase 88.6 0.54 1.2E-05 48.9 4.4 33 250-282 522-554 (592)
147 COG4770 Acetyl/propionyl-CoA c 88.0 0.53 1.1E-05 48.9 3.9 31 252-282 577-607 (645)
148 PLN02226 2-oxoglutarate dehydr 87.7 0.43 9.4E-06 48.3 3.0 35 206-247 134-168 (463)
149 PF02666 PS_Dcarbxylase: Phosp 87.7 0.71 1.5E-05 41.1 4.1 63 208-280 138-202 (202)
150 cd06663 Biotinyl_lipoyl_domain 87.6 0.53 1.2E-05 34.5 2.7 31 207-244 43-73 (73)
151 COG1566 EmrA Multidrug resista 87.2 0.61 1.3E-05 45.7 3.6 34 250-283 208-241 (352)
152 PRK10255 PTS system N-acetyl g 86.4 1.3 2.8E-05 46.7 5.7 77 206-282 535-647 (648)
153 TIGR02712 urea_carbox urea car 85.9 0.85 1.8E-05 51.1 4.3 33 250-282 1132-1164(1201)
154 cd06849 lipoyl_domain Lipoyl d 85.7 1.1 2.4E-05 30.8 3.4 28 255-282 11-38 (74)
155 TIGR00830 PTBA PTS system, glu 84.2 1.4 2.9E-05 37.0 3.8 21 227-247 84-104 (121)
156 TIGR01000 bacteriocin_acc bact 84.2 1.1 2.4E-05 44.6 3.9 34 250-283 316-350 (457)
157 PTZ00144 dihydrolipoamide succ 84.1 0.99 2.1E-05 45.2 3.5 26 257-282 57-82 (418)
158 PF00358 PTS_EIIA_1: phosphoen 84.0 0.97 2.1E-05 38.4 2.9 23 227-249 88-110 (132)
159 PRK12999 pyruvate carboxylase; 82.5 1.5 3.2E-05 49.1 4.3 32 251-282 1077-1108(1146)
160 cd00210 PTS_IIA_glc PTS_IIA, P 81.8 1.9 4E-05 36.3 3.7 21 227-247 84-104 (124)
161 PRK05704 dihydrolipoamide succ 80.4 1.5 3.4E-05 43.5 3.2 36 206-248 45-80 (407)
162 TIGR02876 spore_yqfD sporulati 80.3 3.8 8.2E-05 40.4 5.9 35 208-242 188-222 (382)
163 PF06898 YqfD: Putative stage 80.1 3.8 8.2E-05 40.3 5.8 53 208-262 191-245 (385)
164 COG2190 NagE Phosphotransferas 80.0 3 6.6E-05 36.6 4.5 55 227-281 91-153 (156)
165 TIGR00999 8a0102 Membrane Fusi 79.3 1.8 3.8E-05 38.9 3.0 32 208-246 90-121 (265)
166 TIGR01730 RND_mfp RND family e 79.2 1.9 4.1E-05 39.6 3.2 35 206-247 134-168 (322)
167 PRK12784 hypothetical protein; 78.9 1.9 4.2E-05 33.9 2.6 36 247-282 1-37 (84)
168 COG1038 PycA Pyruvate carboxyl 78.8 1.8 3.8E-05 47.0 3.2 32 251-282 1080-1111(1149)
169 KOG0559 Dihydrolipoamide succi 77.9 1.6 3.5E-05 43.3 2.4 35 206-247 115-149 (457)
170 COG0845 AcrA Membrane-fusion p 77.6 1.9 4.2E-05 39.0 2.8 32 208-246 68-99 (372)
171 PRK14844 bifunctional DNA-dire 77.6 3.1 6.7E-05 50.0 4.9 22 224-245 2421-2442(2836)
172 COG0508 AceF Pyruvate/2-oxoglu 77.5 2.3 4.9E-05 42.3 3.4 35 207-248 46-80 (404)
173 TIGR01347 sucB 2-oxoglutarate 77.5 2.1 4.6E-05 42.5 3.2 35 206-247 43-77 (403)
174 PRK03934 phosphatidylserine de 76.6 3.5 7.6E-05 38.6 4.2 51 228-281 215-265 (265)
175 COG4072 Uncharacterized protei 76.3 4.3 9.4E-05 35.2 4.3 51 208-265 93-144 (161)
176 PRK02597 rpoC2 DNA-directed RN 75.4 7.4 0.00016 44.3 7.0 36 227-262 405-447 (1331)
177 COG3608 Predicted deacylase [G 75.3 3.2 6.9E-05 40.5 3.7 31 252-283 258-288 (331)
178 KOG0368 Acetyl-CoA carboxylase 75.2 3.8 8.1E-05 47.1 4.6 51 232-282 667-717 (2196)
179 PRK03140 phosphatidylserine de 72.4 3.4 7.4E-05 38.6 3.1 63 209-281 196-258 (259)
180 PLN02528 2-oxoisovalerate dehy 71.8 4.2 9.1E-05 40.5 3.7 35 207-248 42-76 (416)
181 PF12700 HlyD_2: HlyD family s 71.0 8.1 0.00018 35.5 5.2 40 208-247 136-193 (328)
182 KOG0369 Pyruvate carboxylase [ 70.9 3.3 7.1E-05 44.4 2.7 32 251-282 1107-1138(1176)
183 TIGR01349 PDHac_trf_mito pyruv 69.1 4.6 0.0001 40.5 3.3 34 207-247 43-77 (435)
184 KOG0238 3-Methylcrotonyl-CoA c 69.0 4 8.7E-05 42.3 2.9 31 252-282 603-633 (670)
185 TIGR03309 matur_yqeB selenium- 68.5 5.8 0.00013 37.5 3.6 34 248-282 162-195 (256)
186 PF02749 QRPTase_N: Quinolinat 68.3 4.9 0.00011 31.2 2.7 20 227-246 49-68 (88)
187 PRK11856 branched-chain alpha- 66.1 6.6 0.00014 38.6 3.7 35 207-248 46-80 (411)
188 cd06251 M14_ASTE_ASPA_like_1 A 65.4 8.4 0.00018 36.1 4.1 34 248-282 217-250 (287)
189 cd06255 M14_ASTE_ASPA_like_5 A 64.4 8.8 0.00019 36.2 4.1 32 250-282 231-262 (293)
190 TIGR02645 ARCH_P_rylase putati 63.5 12 0.00025 38.5 5.0 42 241-282 404-469 (493)
191 PLN02744 dihydrolipoyllysine-r 62.9 6.9 0.00015 40.5 3.2 26 257-282 125-150 (539)
192 TIGR02971 heterocyst_DevB ABC 61.2 10 0.00022 35.6 3.8 33 205-245 203-235 (327)
193 cd06253 M14_ASTE_ASPA_like_3 A 61.1 10 0.00022 35.9 3.9 32 250-282 229-260 (298)
194 cd06254 M14_ASTE_ASPA_like_4 A 60.8 12 0.00025 35.2 4.1 34 248-282 221-254 (288)
195 cd06250 M14_PaAOTO_like An unc 60.1 11 0.00024 36.7 4.0 31 251-282 290-320 (359)
196 PRK04192 V-type ATP synthase s 59.9 15 0.00032 38.5 5.1 53 227-281 122-177 (586)
197 TIGR02994 ectoine_eutE ectoine 59.5 12 0.00026 36.1 4.1 30 252-282 257-286 (325)
198 cd01134 V_A-ATPase_A V/A-type 57.9 23 0.00049 35.2 5.7 43 227-270 53-98 (369)
199 PF07831 PYNP_C: Pyrimidine nu 57.7 9.3 0.0002 29.2 2.4 25 256-282 30-54 (75)
200 cd06252 M14_ASTE_ASPA_like_2 A 57.1 21 0.00046 33.9 5.3 34 248-282 242-275 (316)
201 PRK04350 thymidine phosphoryla 56.3 19 0.0004 37.1 5.0 40 243-282 398-461 (490)
202 PRK10871 nlpD lipoprotein NlpD 56.1 21 0.00045 34.7 5.0 19 263-281 271-289 (319)
203 PF01551 Peptidase_M23: Peptid 55.9 23 0.0005 27.1 4.5 12 208-219 15-26 (96)
204 PF01551 Peptidase_M23: Peptid 55.9 10 0.00022 29.1 2.4 21 227-247 55-75 (96)
205 cd06910 M14_ASTE_ASPA_like_7 A 55.5 21 0.00044 33.3 4.8 47 228-281 225-272 (272)
206 TIGR02644 Y_phosphoryl pyrimid 55.3 13 0.00027 37.3 3.5 40 207-246 334-397 (405)
207 PRK14698 V-type ATP synthase s 54.6 23 0.00051 39.4 5.7 54 227-282 122-178 (1017)
208 PRK11892 pyruvate dehydrogenas 53.7 13 0.00028 37.7 3.4 34 207-247 46-80 (464)
209 TIGR03327 AMP_phos AMP phospho 53.5 21 0.00046 36.8 4.9 39 244-282 408-470 (500)
210 TIGR00163 PS_decarb phosphatid 53.4 9.8 0.00021 35.0 2.3 48 232-280 189-236 (238)
211 PF09891 DUF2118: Uncharacteri 51.8 14 0.00031 32.2 2.9 38 234-282 75-112 (150)
212 TIGR01042 V-ATPase_V1_A V-type 51.6 30 0.00065 36.4 5.7 53 228-282 123-178 (591)
213 PF02749 QRPTase_N: Quinolinat 51.0 12 0.00027 28.9 2.2 24 259-282 44-67 (88)
214 COG4942 Membrane-bound metallo 49.9 21 0.00046 36.0 4.1 59 207-281 332-390 (420)
215 PF05896 NQRA: Na(+)-transloca 49.5 10 0.00023 35.7 1.8 29 252-280 31-59 (257)
216 KOG0557 Dihydrolipoamide acety 48.9 14 0.00031 37.6 2.8 25 258-282 52-76 (470)
217 PRK05820 deoA thymidine phosph 47.9 29 0.00063 35.2 4.8 37 246-282 336-403 (440)
218 TIGR02388 rpoC2_cyan DNA-direc 47.7 38 0.00083 38.5 6.0 36 227-262 405-447 (1227)
219 TIGR02643 T_phosphoryl thymidi 46.5 32 0.00069 34.9 4.8 20 263-282 383-402 (437)
220 TIGR02644 Y_phosphoryl pyrimid 45.8 34 0.00074 34.3 4.9 39 244-282 327-396 (405)
221 PRK02597 rpoC2 DNA-directed RN 45.1 28 0.0006 39.9 4.5 23 222-244 947-969 (1331)
222 TIGR02643 T_phosphoryl thymidi 44.7 16 0.00034 37.1 2.3 20 227-246 384-403 (437)
223 TIGR01043 ATP_syn_A_arch ATP s 44.5 44 0.00095 35.1 5.6 43 227-270 119-164 (578)
224 PRK05820 deoA thymidine phosph 44.3 16 0.00035 37.0 2.4 22 226-247 384-405 (440)
225 PRK00044 psd phosphatidylserin 44.1 20 0.00042 34.0 2.8 48 232-281 237-285 (288)
226 PRK06078 pyrimidine-nucleoside 43.0 38 0.00083 34.3 4.8 39 244-282 329-398 (434)
227 PRK02259 aspartoacylase; Provi 42.6 17 0.00037 34.2 2.2 61 208-279 216-281 (288)
228 COG0157 NadC Nicotinate-nucleo 41.6 20 0.00043 34.4 2.4 21 227-247 68-88 (280)
229 PRK06078 pyrimidine-nucleoside 41.6 19 0.0004 36.5 2.3 42 207-248 336-401 (434)
230 PRK09603 bifunctional DNA-dire 41.4 36 0.00078 41.7 4.9 18 264-281 2616-2633(2890)
231 PRK10871 nlpD lipoprotein NlpD 41.2 31 0.00066 33.6 3.7 40 207-246 230-291 (319)
232 CHL00117 rpoC2 RNA polymerase 41.0 34 0.00074 39.4 4.4 38 225-262 404-449 (1364)
233 PRK09603 bifunctional DNA-dire 40.7 40 0.00086 41.4 5.0 22 223-244 2612-2633(2890)
234 CHL00117 rpoC2 RNA polymerase 40.7 72 0.0016 36.8 6.9 74 207-283 350-425 (1364)
235 PF06898 YqfD: Putative stage 39.8 32 0.0007 33.8 3.7 34 247-280 186-226 (385)
236 TIGR02876 spore_yqfD sporulati 39.7 29 0.00063 34.2 3.3 31 249-279 185-222 (382)
237 TIGR00164 PS_decarb_rel phosph 39.6 81 0.0018 27.9 5.9 78 204-282 70-152 (189)
238 cd06848 GCS_H Glycine cleavage 39.6 28 0.00062 27.2 2.7 27 256-282 26-53 (96)
239 TIGR02645 ARCH_P_rylase putati 38.5 21 0.00046 36.7 2.2 41 207-247 414-471 (493)
240 PRK04350 thymidine phosphoryla 37.9 22 0.00048 36.5 2.3 41 207-247 406-463 (490)
241 PF03811 Zn_Tnp_IS1: InsA N-te 37.9 15 0.00032 24.5 0.7 14 1-14 1-14 (36)
242 KOG1668 Elongation factor 1 be 37.4 23 0.00049 33.1 2.0 35 213-252 173-207 (231)
243 PRK11637 AmiB activator; Provi 37.4 53 0.0011 32.5 4.7 20 227-246 381-400 (428)
244 TIGR03327 AMP_phos AMP phospho 36.1 25 0.00054 36.3 2.2 41 207-247 415-472 (500)
245 PRK11637 AmiB activator; Provi 35.9 50 0.0011 32.6 4.4 60 206-281 339-398 (428)
246 PRK05305 phosphatidylserine de 33.6 1.2E+02 0.0026 27.2 6.1 78 204-282 89-172 (206)
247 COG1155 NtpA Archaeal/vacuolar 32.4 1E+02 0.0022 32.3 5.9 54 227-281 120-175 (588)
248 PRK06149 hypothetical protein; 31.6 33 0.00072 37.7 2.5 42 205-246 441-496 (972)
249 COG4072 Uncharacterized protei 31.4 90 0.0019 27.3 4.5 26 256-281 97-122 (161)
250 KOG2419 Phosphatidylserine dec 31.2 23 0.0005 37.9 1.1 36 207-250 886-921 (975)
251 PRK10718 RpoE-regulated lipopr 30.3 1.1E+02 0.0025 27.7 5.2 44 228-272 69-115 (191)
252 COG0739 NlpD Membrane proteins 30.1 38 0.00082 30.3 2.2 20 226-245 215-234 (277)
253 TIGR02388 rpoC2_cyan DNA-direc 29.7 63 0.0014 36.9 4.2 23 222-244 945-967 (1227)
254 PF06572 DUF1131: Protein of u 28.7 77 0.0017 28.3 3.8 44 229-272 49-95 (171)
255 cd01572 QPRTase Quinolinate ph 26.7 50 0.0011 31.0 2.5 21 227-247 62-82 (268)
256 PRK13380 glycine cleavage syst 25.7 63 0.0014 27.7 2.7 33 250-282 35-68 (144)
257 PRK08072 nicotinate-nucleotide 25.6 54 0.0012 31.1 2.5 21 227-247 68-88 (277)
258 PF01333 Apocytochr_F_C: Apocy 25.5 26 0.00055 29.5 0.2 34 208-241 27-60 (118)
259 PTZ00403 phosphatidylserine de 24.9 59 0.0013 32.1 2.6 49 231-282 290-339 (353)
260 cd00291 SirA_YedF_YeeD SirA, Y 24.6 1.7E+02 0.0037 20.7 4.5 29 117-145 39-69 (69)
261 PF02666 PS_Dcarbxylase: Phosp 23.5 2E+02 0.0044 25.4 5.6 79 204-282 79-169 (202)
262 PRK14844 bifunctional DNA-dire 23.5 1.5E+02 0.0031 36.9 5.8 57 227-283 2322-2443(2836)
263 PF13375 RnfC_N: RnfC Barrel s 23.2 1.3E+02 0.0029 24.2 4.0 23 259-281 39-61 (101)
264 PRK06096 molybdenum transport 22.9 63 0.0014 30.8 2.4 21 227-247 65-85 (284)
265 PRK06543 nicotinate-nucleotide 22.8 64 0.0014 30.8 2.4 21 227-247 69-89 (281)
266 PRK05742 nicotinate-nucleotide 22.8 66 0.0014 30.5 2.5 21 227-247 70-90 (277)
267 cd01572 QPRTase Quinolinate ph 22.4 91 0.002 29.2 3.3 25 258-282 56-80 (268)
268 PF01206 TusA: Sulfurtransfera 21.0 1.3E+02 0.0029 21.6 3.3 28 118-145 41-70 (70)
269 PRK07428 nicotinate-nucleotide 20.8 76 0.0016 30.3 2.5 21 227-247 76-96 (288)
270 cd01568 QPRTase_NadC Quinolina 20.7 77 0.0017 29.6 2.5 21 227-247 61-81 (269)
271 COG0213 DeoA Thymidine phospho 20.6 87 0.0019 31.8 2.9 20 227-246 381-400 (435)
272 PF06062 UPF0231: Uncharacteri 20.2 2.1E+02 0.0046 24.0 4.8 37 111-147 37-73 (121)
273 COG0688 Psd Phosphatidylserine 20.2 1.3E+02 0.0028 28.0 3.8 77 204-281 122-203 (239)
274 PRK05848 nicotinate-nucleotide 20.1 80 0.0017 29.9 2.4 21 227-247 62-82 (273)
275 PRK06978 nicotinate-nucleotide 20.1 80 0.0017 30.4 2.4 21 227-247 86-106 (294)
No 1
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=100.00 E-value=3.5e-51 Score=375.80 Aligned_cols=260 Identities=65% Similarity=0.931 Sum_probs=204.9
Q ss_pred CCcccccCCCcccc-cccCCCCCCCchhhhhhhhhccCCCCCCCccccCCCCCCCceeeecccceeeEEEEEee-e--cC
Q 023356 1 MASIWIPCPKISWV-APVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFASSAPFSGFQCSIKKQSAVWKVQAKVI-A--KK 76 (283)
Q Consensus 1 mas~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~ 76 (283)
|||||+||+||.+. +..|.... ..+||+ .+|+.++|.++ | ++++|..+||+|||+| | ++
T Consensus 1 mas~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~f~~~----~---~~~~~~~~~~~~a~~ne~~~~~ 63 (274)
T PLN02983 1 MASLSVPCAKTAAAAANVGSRLS--------RSSFRL--QPKPNISFPSK----G---PNPKRSAVPKVKAQLNEVAVDG 63 (274)
T ss_pred CCccccCcccceeeccccccccc--------cccccc--CCCCCcccccC----C---CCcccceeeeEEeeeceeeecc
Confidence 99999999999987 33442211 234554 78999999997 3 6899999999999999 4 99
Q ss_pred CCCCCccccCCCcccCchhhhccc-----cCCCCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCC
Q 023356 77 PLNSTAAVDTGSEVASSEEKVESA-----EKKIPDASAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQP 151 (283)
Q Consensus 77 ~~n~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~i~eI~eLikl~d~s~i~ELeLk~~d~~L~Irk~~~~~~ 151 (283)
+||++++..+++.++.++++++.+ +++++|+++|++||.|+.+|++|+|++||.||+||+.||+|.|||++++++
T Consensus 64 ~sn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~f~~qv~~lv~lv~~~di~e~~lk~~~~e~~irkkeal~~ 143 (274)
T PLN02983 64 SSNSAKSDDPKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLVKLVDSRDIVELQLKQLDCELVIRKKEALPQ 143 (274)
T ss_pred ccccccccCCcccccccccccccccccCCCcccCCHHHHHHHHHHHHHHHhhhccccceeeeccccceEEEEecccccCC
Confidence 999999999999999999888773 588999999999999999999999999999999999999999999998865
Q ss_pred Cc---cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCccCCcCeEEEccCCCCCC
Q 023356 152 PE---CIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPA--KKSSHPPLKCPMAGTFYRCPAPGEP 226 (283)
Q Consensus 152 ~~---~~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~~~~~a~~~~~--~~~~~~~I~AP~vGtf~~~p~~~~~ 226 (283)
++ ++..++++.++...|..+ +++.. +.+.++..++ .+++.+.++ ..+++..|+|||.|+||+.|.+++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~p~~~---~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~s~~~~V~APmaGtf~r~p~pge~ 217 (274)
T PLN02983 144 PPPPAPVVMMQPPPPHAMPPASP---PAAQP-APSAPASSPP--PTPASPPPAKAPKSSHPPLKSPMAGTFYRSPAPGEP 217 (274)
T ss_pred CCCCCceEEecCCCcccCCCCCC---cccCC-CCCCCCCCCC--CCCCCCCCCCCCcCCCCeEeCCcCeEEEeccCCCCc
Confidence 43 222333333322222211 11010 0001111111 111112122 2367789999999999999999999
Q ss_pred ccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
|+|++||.|++||+||+||+||++++|+|+.+|+|++|++++||.|.+|++|++|+|
T Consensus 218 w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 218 PFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred ceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999987
No 2
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.98 E-value=2.7e-31 Score=228.73 Aligned_cols=156 Identities=43% Similarity=0.734 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023356 112 AFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASS 191 (283)
Q Consensus 112 ~~i~eI~eLikl~d~s~i~ELeLk~~d~~L~Irk~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~ 191 (283)
|++++|++||++|++++|+||+|+.+|++|+|+|........ . .++ .+.+... +.+.+.. +..++..
T Consensus 1 Md~~~Ik~Li~~~~~s~l~elei~~~~~~l~l~k~~~~~~~~--~-~~~----~~~~~~~-~~~~~~~--~~~~~~~--- 67 (156)
T TIGR00531 1 MNIREIKELIKLIEESGITELELKEEEFEVRLSKAAAAAKKS--A-VQQ----AAAPVPA-QVPAAPS--AQAPAPA--- 67 (156)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeCCEEEEEEecCCCCccc--c-ccc----cCCCccc-cCCCCCC--CCCCCCC---
Confidence 578999999999999999999999999999999964221100 0 000 0000000 0000000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCc
Q 023356 192 VPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 271 (283)
Q Consensus 192 ~~~~a~~~~~~~~~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~ 271 (283)
...++ + .....+...|+|||+|+||++|+|+.+|||++||.|++||+||+||+||++++|+|+++|+|++|++++|+.
T Consensus 68 ~~~~~-~-~~~~~~~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~ 145 (156)
T TIGR00531 68 VCAPA-P-AKADKKGHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP 145 (156)
T ss_pred CCCCC-c-ccccCCCCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE
Confidence 00000 0 111123457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEc
Q 023356 272 VSVDTPLLVIV 282 (283)
Q Consensus 272 V~~G~pL~~Ie 282 (283)
|+||++||+|+
T Consensus 146 V~~Gq~L~~i~ 156 (156)
T TIGR00531 146 VEYGQPLIVIE 156 (156)
T ss_pred ECCCCEEEEEC
Confidence 99999999985
No 3
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.97 E-value=6.1e-31 Score=226.25 Aligned_cols=155 Identities=42% Similarity=0.708 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023356 112 AFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASS 191 (283)
Q Consensus 112 ~~i~eI~eLikl~d~s~i~ELeLk~~d~~L~Irk~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~ 191 (283)
|++++|++||++|++++|+||+|+.+|++|+|+|.......+ .. ... ...+... .+++..+....++
T Consensus 1 Md~~~I~~Li~~~~~s~l~ele~~~~~~~i~l~k~~~~~~~~-~~-~~~----~~~p~~~--~~~~~~~~~~~~~----- 67 (155)
T PRK06302 1 MDIRKIKKLIELVDESGISEFEIKEGEESVRISRAAAAPVAP-VA-QQA----AAAPVAA--APAAAAAAAAAPA----- 67 (155)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEcCCEEEEEEeCCCCCccc-cc-ccc----ccCCCCC--CCCCCCccccCCC-----
Confidence 678999999999999999999999999999999864221100 00 000 0000000 0000000000000
Q ss_pred CCCCCCCCCCCCCCCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCc
Q 023356 192 VPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 271 (283)
Q Consensus 192 ~~~~a~~~~~~~~~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~ 271 (283)
..+.. +....+...|+|||+|+||++|+|+.+|||++||.|++||+||+||+||++++|+|+++|+|+++++++|+.
T Consensus 68 -~~~~~--~~~~~~~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~ 144 (155)
T PRK06302 68 -AAPAA--AAAEAEGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP 144 (155)
T ss_pred -CCCCC--CccCCCCCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE
Confidence 00000 111123457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEc
Q 023356 272 VSVDTPLLVIV 282 (283)
Q Consensus 272 V~~G~pL~~Ie 282 (283)
|+||++||+|+
T Consensus 145 V~~Gq~L~~i~ 155 (155)
T PRK06302 145 VEFGQPLFVIE 155 (155)
T ss_pred eCCCCEEEEeC
Confidence 99999999985
No 4
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.95 E-value=1.7e-27 Score=201.79 Aligned_cols=140 Identities=39% Similarity=0.591 Sum_probs=100.8
Q ss_pred HHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023356 117 VSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPA 196 (283)
Q Consensus 117 I~eLikl~d~s~i~ELeLk~~d~~L~Irk~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~~~~~a 196 (283)
|++|+++++++++.+++++.++++++++|........ ..... ..... +..... .+++. .+.
T Consensus 1 i~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~------~~~~~~----~~~~~-----~~~ 61 (140)
T COG0511 1 IKELIKLVVESDGTEFEVKVEEGEVRLSRKTPVVQDV-PAPAP---IEASS------PSAAAA----QPAAS-----APA 61 (140)
T ss_pred CcchhhheeeeCcEEEEEEeCCcEEEEeecccccccc-ccccc---ccccc------cccccc----Ccccc-----ccc
Confidence 4689999999999999999999999998875110000 00000 00000 000000 00000 000
Q ss_pred CCCCCCCCCCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCC
Q 023356 197 LPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDT 276 (283)
Q Consensus 197 ~~~~~~~~~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~ 276 (283)
.. +....+...|+|||+|+||+ .||++||+|++||+||+||+|||+|+|.|+.+|+|++|++++||.|+|||
T Consensus 62 ~~-~~~~~~~~~V~SPm~Gtv~~-------~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~ 133 (140)
T COG0511 62 PA-PAAAAGGTQVTSPMVGTVYK-------PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGD 133 (140)
T ss_pred CC-ccccccCceEecCcceEEEE-------EeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCC
Confidence 00 00111456899999999999 89999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcC
Q 023356 277 PLLVIVP 283 (283)
Q Consensus 277 pL~~Iep 283 (283)
+|++|++
T Consensus 134 ~L~~I~~ 140 (140)
T COG0511 134 PLAVIEP 140 (140)
T ss_pred EEEEecC
Confidence 9999985
No 5
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.70 E-value=1.6e-17 Score=125.97 Aligned_cols=73 Identities=41% Similarity=0.554 Sum_probs=68.1
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
.|++|+.|.+++.. ....|+|++||.|++||+||.||+||+.++|+|+.+|+|.++++++|+.|.+|++|++|
T Consensus 2 ~i~~P~~G~~~~~~-~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEG-TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEE-EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEec-ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 48899999988754 55669999999999999999999999999999999999999999999999999999987
No 6
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.69 E-value=8.5e-17 Score=120.88 Aligned_cols=68 Identities=21% Similarity=0.429 Sum_probs=66.2
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|+||+.|++++ |+|++||.|++||+|+.||+||+.++|+|+.+|+|.++++++|+.|..|++|++|+
T Consensus 4 ~v~a~~~G~i~~-------~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 4 DVRAEIVASVLE-------VVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 499999999999 99999999999999999999999999999999999999999999999999999984
No 7
>PRK07051 hypothetical protein; Validated
Probab=99.68 E-value=2.2e-16 Score=121.61 Aligned_cols=76 Identities=43% Similarity=0.766 Sum_probs=73.4
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+||+.|+||+++.+..+++|++||.|++||.|+.||+||+.++|+|+.+|+|.++++++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999985
No 8
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.66 E-value=9.7e-16 Score=129.02 Aligned_cols=71 Identities=37% Similarity=0.557 Sum_probs=68.2
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+...|+||+.|++++ |+|++||.|++||.|++||+||+.++|.|+.+|+|.+|+++.||.|..|++|++|.
T Consensus 60 ~~~~v~Ap~~G~V~~-------i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 130 (130)
T PRK06549 60 GADAMPSPMPGTILK-------VLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITIG 130 (130)
T ss_pred CCcEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEeC
Confidence 556799999999999 99999999999999999999999999999999999999999999999999999873
No 9
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.65 E-value=5.1e-16 Score=115.91 Aligned_cols=68 Identities=38% Similarity=0.568 Sum_probs=66.4
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|+||+.|+|++ |++++||+|++||+|+.||+||+..+|.++.+|+|.++++++||.|..|++|++|+
T Consensus 3 ~i~a~~~G~i~~-------~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 3 KVYASMAGNVWK-------IVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred eEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 589999999999 99999999999999999999999999999999999999999999999999999985
No 10
>PRK06748 hypothetical protein; Validated
Probab=99.64 E-value=7.3e-16 Score=120.65 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=66.2
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe-cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA-MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa-mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+|||.|++.+ |+|++||.|++||+|++||+ +|.+++|+||.+|+|.+|++++||.|..|++|++|+
T Consensus 5 ~~v~sp~~G~I~~-------w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 5 EGVYSPCYGKVEK-------LFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred eEEecCCcEEEEE-------EEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 4699999999999 99999999999999999999 678999999999999999999999999999999986
No 11
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.60 E-value=5.9e-15 Score=127.28 Aligned_cols=70 Identities=36% Similarity=0.644 Sum_probs=67.5
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
+...|+||+.|++++ |+|++||.|++||.|++||+|||.++|.|+.+|+|.++++++||.|..|++|++|
T Consensus 83 ~~~~v~ap~~G~I~~-------~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 83 GENVVTAPMPGKILR-------ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCEEECCCCeEEEE-------EEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 445799999999999 9999999999999999999999999999999999999999999999999999987
No 12
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.52 E-value=5.8e-14 Score=101.29 Aligned_cols=67 Identities=42% Similarity=0.694 Sum_probs=64.6
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
.|+||+.|+|.+ |+++.||.|++||.|+.|+++|+..+|+|+.+|+|..+++++|+.|..|++|+.|
T Consensus 1 ~v~a~~~G~v~~-------~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVK-------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEE-------EEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 479999999998 9999999999999999999999999999999999999999999999999999975
No 13
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.41 E-value=5e-13 Score=136.33 Aligned_cols=71 Identities=34% Similarity=0.545 Sum_probs=68.0
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+...|+|||.|++++ |+|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 524 ~~~~v~apm~G~V~~-------~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 524 GPGDITVAIPGSIIA-------IHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred CCCeEecCcceEEEE-------EEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 334699999999999 99999999999999999999999999999999999999999999999999999986
No 14
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.35 E-value=2.2e-12 Score=119.73 Aligned_cols=64 Identities=31% Similarity=0.491 Sum_probs=61.2
Q ss_pred cCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 213 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 213 ~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..|++.+ |+|++||.|++||+||+||+||+.++|+||.+|+|+++++++|+.|..|++|++|++
T Consensus 15 ~~g~~~~-------~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 15 TEGKVAG-------WLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred ceEEEEE-------EEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence 3689998 999999999999999999999999999999999999999999999999999999863
No 15
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.34 E-value=2.3e-12 Score=131.55 Aligned_cols=73 Identities=42% Similarity=0.637 Sum_probs=69.8
Q ss_pred CCCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 204 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 204 ~~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
.+...|+||+.|+|++ |+|++||.|++||+|++||+||+.++|+|+.+|+|+++++++|+.|+.|++|++|+|
T Consensus 520 ~~~~~V~Ap~~G~v~~-------~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 520 SAPGAVTSPMPGTVVK-------VKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCceEeCCCcEEEEE-------EEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 3445799999999999 899999999999999999999999999999999999999999999999999999987
No 16
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.33 E-value=6.7e-12 Score=93.56 Aligned_cols=61 Identities=48% Similarity=0.724 Sum_probs=58.7
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
.|++++ |++++||.|++||.|+.||+||+..+|+||.+|+|++++++.|+.|..|+.|++|
T Consensus 13 ~g~~~~-------~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVK-------WLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEE-------EEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 588888 9999999999999999999999999999999999999999999999999999985
No 17
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.32 E-value=2.7e-12 Score=130.81 Aligned_cols=67 Identities=40% Similarity=0.647 Sum_probs=64.1
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeE
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPL 278 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL 278 (283)
+...|+|||+|++++ |+|++||.|++||+|++||+|||.++|.|+.+|+|.+|++++|+.|..|++|
T Consensus 516 ~~~~v~ap~~G~v~~-------~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 516 AGTPVTAPIAGSIVK-------VKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCeEeCCccEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 345799999999999 9999999999999999999999999999999999999999999999999976
No 18
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.32 E-value=4e-12 Score=129.79 Aligned_cols=70 Identities=37% Similarity=0.681 Sum_probs=67.3
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|+|||.|+|++ |+|++||.|++||+||+||+|||.++|.||.+|+|.++++++|+.|..|++|++|.
T Consensus 524 ~~~V~Ap~~G~I~~-------~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 524 GEPVTAPLAGNIFK-------VIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CceEECCccEEEEE-------EEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 44799999999999 99999999999999999999999999999999999999999999999999999873
No 19
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.32 E-value=3.6e-12 Score=126.63 Aligned_cols=62 Identities=31% Similarity=0.469 Sum_probs=59.8
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|++++ |+|++||.|++||+||+||+||+.++|+|+++|+|.+|++++||.|..|++|++|+
T Consensus 105 eG~I~~-------w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 105 DGTLAT-------FLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred eEEEEE-------EEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence 477888 99999999999999999999999999999999999999999999999999999985
No 20
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.28 E-value=7.3e-12 Score=135.74 Aligned_cols=72 Identities=32% Similarity=0.547 Sum_probs=68.6
Q ss_pred CCCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 204 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 204 ~~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+...|.|||.|+++. |+|++||.|++||+|++||+|||.++|.||.+|+|++|++++|+.|+.|++|++|+
T Consensus 1072 ~~~~~I~a~~~G~v~~-------~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1072 GNPAHVGAPMPGVIIE-------VKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred ccCceeecCCCcEEEE-------EEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 3455799999999998 99999999999999999999999999999999999999999999999999999985
No 21
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.28 E-value=7.7e-12 Score=136.23 Aligned_cols=72 Identities=31% Similarity=0.552 Sum_probs=69.1
Q ss_pred CCCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 204 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 204 ~~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+...|+|||.|++++ |+|++||.|++||+|++||+|||.++|.|+.+|+|+++++++|+.|..|++|+.|+
T Consensus 1130 ~~~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1130 EGAEQVESEYAGNFWK-------VLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCCcEEeCCceEEEEE-------EEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 4566899999999999 99999999999999999999999999999999999999999999999999999985
No 22
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.28 E-value=8.5e-12 Score=125.43 Aligned_cols=72 Identities=33% Similarity=0.533 Sum_probs=68.6
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
....++|||.|++.. ..|+.|+.|.+||+|+++|+|||.|.|+|+.+|+|+++.+..|+.|..|++|++|++
T Consensus 574 ~~~~l~aPMpG~v~~-------v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 574 SSGELLAPMPGTVVS-------VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred CCCceecCCCceEEE-------EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 345799999999999 899999999999999999999999999999999999999999999999999999975
No 23
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.26 E-value=1.2e-11 Score=121.62 Aligned_cols=62 Identities=44% Similarity=0.619 Sum_probs=59.8
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|++.. |+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 58 eg~I~~-------w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 58 EGTVVE-------WKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred eEEEEE-------EEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 578888 99999999999999999999999999999999999999999999999999999986
No 24
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.25 E-value=1.3e-11 Score=134.05 Aligned_cols=72 Identities=32% Similarity=0.543 Sum_probs=69.0
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
+...|.|||.|++.+ ++|++||.|++||+|++||+|||.++|.||.+|+|+++++++|+.|+.|++|++|++
T Consensus 1075 ~~~~v~apm~G~v~~-------i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1075 NPGHVGAPMPGSVVT-------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CCceEeCCceEEEEE-------EEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 445799999999999 999999999999999999999999999999999999999999999999999999985
No 25
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.21 E-value=2.5e-11 Score=118.84 Aligned_cols=62 Identities=37% Similarity=0.541 Sum_probs=59.9
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-|++.+ |+|++||.|++||+|++||++|..+||.|+++|+|.+|++++|+.|..|++|++|+
T Consensus 16 EG~I~~-------W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~ 77 (404)
T COG0508 16 EGTIVE-------WLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE 77 (404)
T ss_pred eEEEEE-------EecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEe
Confidence 478888 99999999999999999999999999999999999999999999999999999985
No 26
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.18 E-value=5e-11 Score=116.86 Aligned_cols=62 Identities=35% Similarity=0.446 Sum_probs=60.3
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-|++++ |+|++||.|++||.||+||+||+.++|+|+++|+|.++++++|+.|..|++|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (407)
T PRK05704 16 EATIAT-------WHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRID 77 (407)
T ss_pred eEEEEE-------EEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 488998 99999999999999999999999999999999999999999999999999999986
No 27
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.18 E-value=2.6e-11 Score=125.59 Aligned_cols=73 Identities=37% Similarity=0.570 Sum_probs=69.4
Q ss_pred CCCCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 203 KSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 203 ~~~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..+..+|-|||.|++.. .+|+.||+|++||+|.+||+|||...|.||.+|+|.+++|.+||.|+.|+.|+.++
T Consensus 1076 ~~Np~higApmpG~Vv~-------v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1076 PGNPGHIGAPMPGVVVE-------VKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCCccccCCCCCCceEE-------EEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 35667899999999998 89999999999999999999999999999999999999999999999999999875
No 28
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.12 E-value=1.6e-10 Score=113.25 Aligned_cols=62 Identities=29% Similarity=0.442 Sum_probs=60.1
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|++++ |+|++||.|++||.||+||+||+.++|+|+++|+|.++++++|+.|..|++|++|+
T Consensus 14 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 14 EGTVAE-------WHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILE 75 (403)
T ss_pred eEEEEE-------EEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 488988 99999999999999999999999999999999999999999999999999999985
No 29
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.07 E-value=2.6e-10 Score=116.45 Aligned_cols=62 Identities=32% Similarity=0.425 Sum_probs=59.4
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-|++++ |+|++||.|++||.||+||+||+.++|+|+++|+|.+|++++|+.|..|++|++|+
T Consensus 149 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 149 EGTITQ-------WLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred eEEEEE-------EEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 467777 99999999999999999999999999999999999999999999999999999985
No 30
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.05 E-value=2.9e-10 Score=116.86 Aligned_cols=62 Identities=29% Similarity=0.347 Sum_probs=58.8
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-|++.+ |+|++||.|++||.||+||+||+.++|+|+++|+|.+|++++|+.|..|++|++|.
T Consensus 218 eg~v~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 218 EVEVTE-------VMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred ceEEEE-------EEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 456666 99999999999999999999999999999999999999999999999999999985
No 31
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.02 E-value=5.8e-10 Score=114.67 Aligned_cols=62 Identities=27% Similarity=0.377 Sum_probs=59.5
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-|++.+ |+|++||.|++||+|++||+||+.++|+|+.+|+|.++++++|+.|..|++|++|+
T Consensus 14 eg~i~~-------~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~ 75 (633)
T PRK11854 14 EVEVTE-------ILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFE 75 (633)
T ss_pred eEEEEE-------EEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEe
Confidence 467777 99999999999999999999999999999999999999999999999999999986
No 32
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.98 E-value=9.2e-10 Score=111.56 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=63.4
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+-|..|. .. ......|+|++||.|++||.||+||+||+.++|+|+++|+|.+++++.|+.|..|++|++|.
T Consensus 117 ~~~~~P~~g~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 117 QEVTVPDIGD-IE-KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred eEEeCCCCCC-cc-eeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 4566666664 21 12223399999999999999999999999999999999999999999999999999999985
No 33
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.94 E-value=2.1e-09 Score=105.73 Aligned_cols=61 Identities=34% Similarity=0.452 Sum_probs=59.2
Q ss_pred eEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 215 GTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 215 Gtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
|++.+ |+|++||.|++||.||+||+||+.+++.++.+|+|.++++++|+.|..|++|++|+
T Consensus 13 g~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 13 CELLR-------WFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEEEE-------EEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 78888 99999999999999999999999999999999999999999999999999999885
No 34
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.92 E-value=2.2e-09 Score=108.68 Aligned_cols=73 Identities=33% Similarity=0.390 Sum_probs=62.2
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|+-|..|. +. ......|+|++||.|++||.||.||+||+.++|+|+++|+|.++++++|+.|..|++|++|.
T Consensus 121 ~~~~P~~g~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 121 EVKVPDIGE-IT-EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred EEecCCCCC-cc-eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 456665554 21 12223399999999999999999999999999999999999999999999999999999985
No 35
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=98.92 E-value=5.5e-10 Score=107.56 Aligned_cols=57 Identities=37% Similarity=0.522 Sum_probs=56.1
Q ss_pred ccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
|+.++||.|++++.||.||++|...+|.||.+|+|+++||++||.|..|+.|+.|+|
T Consensus 92 ~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 92 WLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred HhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 999999999999999999999999999999999999999999999999999999975
No 36
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.89 E-value=2.8e-09 Score=109.34 Aligned_cols=73 Identities=27% Similarity=0.407 Sum_probs=69.2
Q ss_pred CCCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 204 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 204 ~~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
.....|-|||.|++.. ..|++|++|++||.||++.+|||.+-|.+|.+|+|+++.+.+|+.|+.|+.+++|++
T Consensus 1104 ~~~g~igAPMpG~vie-------ikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1104 GVKGHIGAPMPGTVIE-------IKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred CCcccccCCCCCceEE-------EEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence 4456899999999998 799999999999999999999999999999999999999999999999999999985
No 37
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.87 E-value=1.3e-08 Score=71.98 Aligned_cols=64 Identities=38% Similarity=0.546 Sum_probs=60.4
Q ss_pred CCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 211 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 211 AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
++..|++.+ |++..|+.|..|+.++.++++|+..++.++.+|+|.+..+.+|+.|..|++|++|
T Consensus 11 ~~~~g~i~~-------~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVE-------WLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEE-------EEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 456688888 9999999999999999999999999999999999999999999999999999975
No 38
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.85 E-value=6.8e-09 Score=105.31 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=61.3
Q ss_pred CcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 212 PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 212 P~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+..|++++ |+|++||.|++||+||+||+||+.++|.++.+|+|.+++++.|+.|..|++|++|+
T Consensus 11 ~~~g~i~~-------~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~ 74 (546)
T TIGR01348 11 NEEGEVIE-------VLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE 74 (546)
T ss_pred CCceEEEE-------EEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEe
Confidence 35789998 99999999999999999999999999999999999999999999999999999885
No 39
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.81 E-value=1.1e-08 Score=103.70 Aligned_cols=62 Identities=32% Similarity=0.362 Sum_probs=59.8
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|++.. |+|++||.|++||+||.||+||+.++|.|+++|+|.++++++|+.|..|++|+.|+
T Consensus 15 ~g~i~~-------~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~ 76 (547)
T PRK11855 15 EVEVIE-------WLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIE 76 (547)
T ss_pred eEEEEE-------EEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEec
Confidence 478888 99999999999999999999999999999999999999999999999999999886
No 40
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.80 E-value=9.3e-09 Score=104.21 Aligned_cols=61 Identities=33% Similarity=0.529 Sum_probs=58.0
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEE
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVI 281 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~pL~~I 281 (283)
.|++.+ |+|++||.|++||.||.||++|..++|+++.+|+|.+|++++|+ .|..|++|++|
T Consensus 126 eg~I~~-------W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i 187 (539)
T PLN02744 126 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT 187 (539)
T ss_pred eeEEEE-------EEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence 377877 99999999999999999999999999999999999999999996 79999999987
No 41
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.80 E-value=1.3e-08 Score=99.26 Aligned_cols=63 Identities=37% Similarity=0.525 Sum_probs=60.2
Q ss_pred cCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 213 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 213 ~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|++.+ |+|++||.|++||.||.||+||+.++|.|+.+|+|.++++++|+.|..|++|++|.
T Consensus 15 ~~g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~ 77 (411)
T PRK11856 15 TEGEIVE-------WLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE 77 (411)
T ss_pred ceEEEEE-------EEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEe
Confidence 3588888 99999999999999999999999999999999999999999999999999999985
No 42
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.79 E-value=1.1e-08 Score=101.13 Aligned_cols=62 Identities=39% Similarity=0.584 Sum_probs=59.5
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCc-cCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS-VSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~-V~~G~pL~~Ie 282 (283)
.|++.+ |+|++||.|++||.||.||+||+.++|.|+.+|+|.++++++|+. |..|++|++|+
T Consensus 13 eg~i~~-------w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 13 TGNLAK-------WLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred eEEEEE-------EEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence 478888 999999999999999999999999999999999999999999999 99999999984
No 43
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.77 E-value=5.9e-09 Score=104.30 Aligned_cols=70 Identities=29% Similarity=0.485 Sum_probs=66.7
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...+.+||.|.+.. .+|+.||.|.+||.++++++|||.+-++|+.+|+|+.+.++.|+.|..|.+|++++
T Consensus 601 s~v~~aPMpG~Iek-------v~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 601 SGVIVAPMPGIIEK-------VLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CCceecCCCCeeee-------eeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 34699999999998 89999999999999999999999999999999999999999999999999999874
No 44
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=98.72 E-value=1.5e-08 Score=100.26 Aligned_cols=62 Identities=37% Similarity=0.558 Sum_probs=59.2
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCC-CccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~G-d~V~~G~pL~~Ie 282 (283)
-|.+.+ |..++||++.+||+||+||++|..+++++..+|.+.+|++++| ..|..|.+|++|-
T Consensus 52 eGnIvs-------W~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 52 EGNIVS-------WKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCceee-------EeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 488888 9999999999999999999999999999999999999999999 8899999999874
No 45
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.69 E-value=3.8e-08 Score=98.27 Aligned_cols=62 Identities=40% Similarity=0.624 Sum_probs=58.7
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~pL~~Ie 282 (283)
-|++.+ |+|++||.|++||.|+.||++|+.++|.|+.+|+|.+++++.|+ .|..|++|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~ 78 (464)
T PRK11892 16 EGTLAK-------WLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL 78 (464)
T ss_pred eeEEEE-------EEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence 377888 99999999999999999999999999999999999999999995 799999999985
No 46
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.68 E-value=3.7e-08 Score=100.82 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=59.2
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|+++. |+|++||.|+.||.||.||+||+.++|.|+.+|+|.++++++|+.|..|+.|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~ 77 (590)
T TIGR02927 16 EGTITQ-------WLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIG 77 (590)
T ss_pred EEEEEE-------EEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEe
Confidence 477888 99999999999999999999999999999999999999999999999999999874
No 47
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.43 E-value=5e-07 Score=75.72 Aligned_cols=56 Identities=30% Similarity=0.494 Sum_probs=50.4
Q ss_pred cccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEE---EcCCCCccC---CCC-eEEEEcC
Q 023356 228 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEI---LAEDGKSVS---VDT-PLLVIVP 283 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~I---lve~Gd~V~---~G~-pL~~Iep 283 (283)
+.++|+.|++||.++.||++|.+.+|.||++|+|+++ +.++.+.|. ||+ -|++|++
T Consensus 44 lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~ 106 (127)
T PRK01202 44 LPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKP 106 (127)
T ss_pred cCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEe
Confidence 4469999999999999999999999999999999999 777888888 876 8998864
No 48
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.34 E-value=9.1e-07 Score=70.18 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=48.3
Q ss_pred CCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCc
Q 023356 211 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 271 (283)
Q Consensus 211 AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~ 271 (283)
..+.|.++.. ++.++|+.|++||.|+.||++|...+|.||.+|+|++++.+-++.
T Consensus 25 ~~~lG~i~~i------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 25 QDLLGDIVFV------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred HhhCCCEEEE------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 3467877775 788899999999999999999999999999999999998776653
No 49
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.22 E-value=1.9e-06 Score=94.47 Aligned_cols=71 Identities=24% Similarity=0.481 Sum_probs=66.2
Q ss_pred CCCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 204 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 204 ~~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+...+++|.+|++.+ +.|+.|+.|.+||..++||.|||.+++.|..+|+| ....++|+.++.|++|+++.
T Consensus 683 nDpt~LrsPs~GKLl~-------ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~ 753 (2196)
T KOG0368|consen 683 NDPTVLRSPSPGKLLQ-------YLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLT 753 (2196)
T ss_pred CCcceecCCCCccceE-------EEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEee
Confidence 4556899999999999 99999999999999999999999999999999988 78889999999999999864
No 50
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.15 E-value=6.8e-06 Score=80.50 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=61.1
Q ss_pred CCCccCCcCeEEEccCCCCCCcc-ccCCCEEeCCceEEEEEec-------------------------------------
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAF-VKVGDKVQKGQVVCIIEAM------------------------------------- 247 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~-V~vGd~V~~Gq~L~iIEam------------------------------------- 247 (283)
...|.+++.|.+.+ .+ +++||.|++||+|+.|+.-
T Consensus 123 ~~~v~arv~G~V~~-------l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~ 195 (409)
T PRK09783 123 YAIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEA 195 (409)
T ss_pred eEEEeCCcCEEEEE-------EEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHH
Confidence 34699999999988 67 8999999999999999821
Q ss_pred -----------CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 248 -----------KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 248 -----------K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.....|+||.+|+|.+..++.|+.|..|++||.|.
T Consensus 196 ~i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~ 241 (409)
T PRK09783 196 DIRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 241 (409)
T ss_pred HHHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence 12347999999999999999999999999999984
No 51
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.10 E-value=6.4e-06 Score=77.04 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=30.7
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..|+||.+|+|..+.++.|+.|..|++|+.|.|
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 479999999999999999999999999999854
No 52
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=98.05 E-value=1.6e-05 Score=74.15 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=59.2
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
...|+||..|.|.. +++.||.|++||+|+.|.. ++|+||.+|+| .-++.+|-.|..|.-|..|.|
T Consensus 164 Er~IrAp~~Gi~~~--------~~~IGd~V~KGqvLa~I~~----~~V~APidGIV-rGlirdG~~V~~G~Ki~dIDP 228 (256)
T TIGR03309 164 ERVLRAPADGIVTP--------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLL-RGLIHEGLTVTEGLKIGDVDP 228 (256)
T ss_pred eEEEECCCCeEEee--------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEE-EEEecCCCCcCCCCEEEEECC
Confidence 45799999999985 8999999999999999975 79999999987 667789999999999999987
No 53
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.05 E-value=7.6e-06 Score=67.33 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=36.5
Q ss_pred cccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEc
Q 023356 228 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 266 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilv 266 (283)
+-++|+.|++||.++.||++|+..+|.||.+|+|++++-
T Consensus 37 lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~ 75 (110)
T TIGR03077 37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNI 75 (110)
T ss_pred CCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHH
Confidence 458899999999999999999999999999999999953
No 54
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=98.04 E-value=1.9e-06 Score=83.25 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=55.1
Q ss_pred CccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 226 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 226 ~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+|||++||+|+.-|.||+++.+|...+|.+-++|+|++|..+.||....|++|..++
T Consensus 83 eWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e 139 (474)
T KOG0558|consen 83 EWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE 139 (474)
T ss_pred eehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence 499999999999999999999999999999999999999999999999999999874
No 55
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=98.01 E-value=6.8e-06 Score=68.97 Aligned_cols=50 Identities=30% Similarity=0.399 Sum_probs=41.6
Q ss_pred ccCCCCCCccc---cCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCC
Q 023356 219 RCPAPGEPAFV---KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 268 (283)
Q Consensus 219 ~~p~~~~~~~V---~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~ 268 (283)
.....+.-.|| ++|++|++||.+|.||+||+..+|.||++|+|++++-.-
T Consensus 31 a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l 83 (127)
T TIGR00527 31 AQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDAL 83 (127)
T ss_pred HhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhh
Confidence 33444555566 599999999999999999999999999999999987543
No 56
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.99 E-value=8.7e-06 Score=74.79 Aligned_cols=69 Identities=35% Similarity=0.457 Sum_probs=60.9
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCe-------------------------------------
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL------------------------------------- 249 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~------------------------------------- 249 (283)
..|.+|..|++.. ++|+.||.|++||+|+.|+...+
T Consensus 27 ~~v~a~~~G~V~~-------i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~ 99 (322)
T TIGR01730 27 ADLAAEVAGKITK-------ISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAV 99 (322)
T ss_pred EEEEccccEEEEE-------EEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 4699999999988 89999999999999999964211
Q ss_pred ----------------------------------eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 ----------------------------------MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ----------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|+||.+|+|..+.++.|+.|..|++|+.|.
T Consensus 100 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~ 166 (322)
T TIGR01730 100 SQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV 166 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence 236999999999999999999999999999874
No 57
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.95 E-value=1.8e-05 Score=75.23 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=30.9
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
...|+||++|+|.++.++.|+.|..|++|+.|.+
T Consensus 208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~ 241 (346)
T PRK10476 208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLID 241 (346)
T ss_pred cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEec
Confidence 3479999999999999999999999999998853
No 58
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.93 E-value=1.6e-05 Score=65.75 Aligned_cols=45 Identities=29% Similarity=0.474 Sum_probs=38.8
Q ss_pred cccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEE---EcCCCCcc
Q 023356 228 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEI---LAEDGKSV 272 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~I---lve~Gd~V 272 (283)
+-++|+.|++||.||.||++|...+|.||.+|+|+++ +.++-+.+
T Consensus 39 lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~ll 86 (114)
T PRK00624 39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPI 86 (114)
T ss_pred CCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhh
Confidence 4588999999999999999999999999999999999 44444443
No 59
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.90 E-value=1.6e-05 Score=68.15 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=45.9
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCC
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG 269 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~G 269 (283)
.....+.|.++.. .+-++|+.|++||.++.||+||+..+|.||.+|+|++++.+-.
T Consensus 37 d~aq~~lG~I~~v------~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~ 92 (144)
T PRK13380 37 DYAQTMAGDVVFV------RLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE 92 (144)
T ss_pred HHHHHhcCCEEEE------EcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence 3445677877652 2345899999999999999999999999999999999987643
No 60
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.82 E-value=3.9e-05 Score=72.49 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=60.8
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC--------------------------------------
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-------------------------------------- 248 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK-------------------------------------- 248 (283)
..|.++..|.+.. .+|++||.|++||+|+.|+...
T Consensus 48 v~i~~~v~G~V~~-------v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS 120 (310)
T PRK10559 48 VAIAPDVSGLITQ-------VNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMS 120 (310)
T ss_pred EEEccCCceEEEE-------EEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 4688999999998 8999999999999999997621
Q ss_pred --------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 249 --------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 249 --------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-...|+||.+|+|.++.++.|+.|..|++|+.|-
T Consensus 121 ~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv 186 (310)
T PRK10559 121 REEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALV 186 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence 0257999999999999999999999999999763
No 61
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.79 E-value=4e-05 Score=72.27 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=30.2
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+||++|+|..+.++.|+.|..|++|+.|.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~ 235 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLS 235 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEe
Confidence 48999999999999999999999999999875
No 62
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.74 E-value=5.1e-05 Score=73.21 Aligned_cols=70 Identities=23% Similarity=0.346 Sum_probs=59.9
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC-------------------------------------
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK------------------------------------- 248 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK------------------------------------- 248 (283)
...|.+++.|++.. .+|++||.|++||+|+.|+...
T Consensus 63 ~~~l~~~v~G~V~~-------v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~ 135 (385)
T PRK09578 63 QAEVRARVAGIVTA-------RTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRA 135 (385)
T ss_pred EEEEeccCcEEEEE-------EECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34699999999988 8999999999999999997631
Q ss_pred ----------------------------------eeeeEecCCCeEEEEEEcCCCCccCCC--CeEEEEc
Q 023356 249 ----------------------------------LMNEIEADQSGTIAEILAEDGKSVSVD--TPLLVIV 282 (283)
Q Consensus 249 ----------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G--~pL~~Ie 282 (283)
-...|+||++|+|.+.+++.|+.|..| ++|+.|.
T Consensus 136 iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 136 VSERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 124899999999999999999999885 5888763
No 63
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.74 E-value=5.1e-05 Score=73.89 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=30.5
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..|+||++|+|..+.++.|+.|..|++|+.|-+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~ 248 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVP 248 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEe
Confidence 479999999999999999999999999998853
No 64
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.65 E-value=9.4e-05 Score=52.26 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.7
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..|.++.+|+|.+++|++|+.|..|++|++|..
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDS 35 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence 578999999999999999999999999999863
No 65
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.59 E-value=0.00012 Score=70.61 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=59.3
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC-------------------------------------
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK------------------------------------- 248 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK------------------------------------- 248 (283)
...|.++..|++.+ .+|++||.|++||+|+.|+...
T Consensus 61 ~~~l~~~v~G~V~~-------i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~ 133 (385)
T PRK09859 61 VAEIRPQVGGIIIK-------RNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNY 133 (385)
T ss_pred EEEEeccCcEEEEE-------EEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34689999999988 7999999999999999997520
Q ss_pred ----------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCC--eEEEE
Q 023356 249 ----------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDT--PLLVI 281 (283)
Q Consensus 249 ----------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~--pL~~I 281 (283)
-...|+||++|+|.+.+++.|+.|..|+ +|+.|
T Consensus 134 is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 202 (385)
T PRK09859 134 VSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTV 202 (385)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEE
Confidence 1258999999999999999999999984 68876
No 66
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.59 E-value=0.00012 Score=71.17 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=59.2
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC-------------------------------------
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK------------------------------------- 248 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK------------------------------------- 248 (283)
...|.+...|++.+ .+|++||.|++||+|+.|+...
T Consensus 65 ~~~l~a~vsG~V~~-------v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~ 137 (397)
T PRK15030 65 IAEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQY 137 (397)
T ss_pred EEEEEecCcEEEEE-------EEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34689999999988 8999999999999999997420
Q ss_pred ----------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCCe--EEEE
Q 023356 249 ----------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDTP--LLVI 281 (283)
Q Consensus 249 ----------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~p--L~~I 281 (283)
-...|+||++|+|.+..++.|+.|..|++ |+.|
T Consensus 138 is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 138 ISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence 12479999999999999999999999985 6765
No 67
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.51 E-value=0.00018 Score=68.92 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=31.0
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
...|.+++.|.+.. ++|++||.|++||+|+.|+.
T Consensus 61 ~~~l~a~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 61 KVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEecccceEEEE-------EEcCCCCEEcCCCEEEEECc
Confidence 34789999999998 89999999999999999986
No 68
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.48 E-value=0.0004 Score=65.63 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=56.7
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe---cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA---MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa---mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
...|+||..|.|+. +++.||.|++||+|+.|-. .....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 229 ~~~v~A~~~Gl~~~--------~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSGIFVP--------AKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCeEEEE--------CcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence 45799999999984 8999999999999998865 3457899999999996655 55689999999987
No 69
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.44 E-value=0.00013 Score=67.25 Aligned_cols=33 Identities=36% Similarity=0.601 Sum_probs=23.6
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
..|.++..|.+ . ++|++||.|++||+|+.|+..
T Consensus 22 ~~v~~~~~G~v-~-------~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 22 VSVSAPVSGRV-S-------VNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEE--SS-EEE-E-------E-S-TTSEEETT-EEEEEE-H
T ss_pred EEEECCCCEEE-E-------EEeCCcCEECCCCEEEEEECh
Confidence 46899999999 8 899999999999999999873
No 70
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.40 E-value=0.00057 Score=64.96 Aligned_cols=66 Identities=29% Similarity=0.283 Sum_probs=55.6
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+||..|.|+ ++++.||.|++||+|+.|-.. ....+|+||.+|+|.-.. ..-.|..|+.|+.|.
T Consensus 245 ~~v~A~~~G~~~--------~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~ 314 (316)
T cd06252 245 CYVFAPHPGLFE--------PLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLA 314 (316)
T ss_pred EEEEcCCCeEEE--------EecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEe
Confidence 479999999998 589999999999999998664 456799999999996544 445699999999874
No 71
>PRK12784 hypothetical protein; Provisional
Probab=97.37 E-value=0.00077 Score=52.58 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=63.2
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC-eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK-~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|.||.-|++-. .||.+++.|-+.+.|+.|+.|. .+-.|.-..+|.|.-+.|+.||.|..|+.|+.++
T Consensus 7 ~iyS~~~G~Vek-------ifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 7 EICSSYEGKVEE-------IFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred hhcCccccEEEE-------EEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 589999999998 8999999999999999999986 4557889999999999999999999999999986
No 72
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.37 E-value=0.00017 Score=50.91 Aligned_cols=36 Identities=28% Similarity=0.628 Sum_probs=32.2
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCee
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLM 250 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~ 250 (283)
.|.+|..|++.. ++|++||.|++||+|+.|+.....
T Consensus 4 ~I~~~~~G~V~~-------v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 4 TIQAPVSGRVES-------VYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEeCCCCEEEEE-------EEecCCCEEcCCCEEEEECcHHHH
Confidence 589999999998 999999999999999999876543
No 73
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.36 E-value=0.00029 Score=69.18 Aligned_cols=70 Identities=19% Similarity=0.316 Sum_probs=59.3
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC------------------------------------
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK------------------------------------ 248 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK------------------------------------ 248 (283)
....|.++..|++.. .++++||.|++||+|+.|....
T Consensus 86 ~~v~v~~~vsG~V~~-------i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g 158 (415)
T PRK11556 86 NTVTVRSRVDGQLMA-------LHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTN 158 (415)
T ss_pred eEEEEEccccEEEEE-------EECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445789999999988 7999999999999999996421
Q ss_pred -----------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCC--eEEEE
Q 023356 249 -----------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDT--PLLVI 281 (283)
Q Consensus 249 -----------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~--pL~~I 281 (283)
-...|+||++|+|....++.|+.|..|+ +|+.|
T Consensus 159 ~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i 228 (415)
T PRK11556 159 LVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVI 228 (415)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEE
Confidence 1348999999999999999999999984 67765
No 74
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.25 E-value=0.0012 Score=61.98 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=54.3
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec--CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM--KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam--K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
..|+||..|.|+. .++.||.|++||+|+.|... ....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~~~~--------~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLRS--------LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEEE--------ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEEe
Confidence 4799999999984 89999999999999999652 234799999999995555 55579999999987
No 75
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=97.22 E-value=0.0012 Score=63.47 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=55.6
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
..|+||..|.|+ +.++.||.|++||+|+.|-.. ....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 256 ~~v~Ap~~Gi~~--------~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDGLIE--------FMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCeEEE--------EecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEEe
Confidence 369999999998 489999999999999988653 357899999999997654 56789999999876
No 76
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.17 E-value=0.00087 Score=62.83 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=30.6
Q ss_pred CCccCCcC---eEEEccCCCCCCccccCCCEEeCCceEEEEEec
Q 023356 207 PPLKCPMA---GTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 207 ~~I~AP~v---Gtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
..|.++.. |++.+ .+|++||.|++||+|+.|+..
T Consensus 14 ~~v~~~~~~~~G~V~~-------i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 14 VAVAAPSSGGTDRIKK-------LLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred EEecCCCCCCCcEEEE-------EEccCCCEecCCcEEEEecCc
Confidence 46889999 99998 899999999999999999863
No 77
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.11 E-value=0.0011 Score=55.19 Aligned_cols=39 Identities=33% Similarity=0.508 Sum_probs=32.6
Q ss_pred cccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEc
Q 023356 228 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 266 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilv 266 (283)
+-++|+.|++|+.++.||+.|...++.+|++|+|++++-
T Consensus 38 lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~ 76 (122)
T PF01597_consen 38 LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNE 76 (122)
T ss_dssp -B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-G
T ss_pred EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcc
Confidence 568899999999999999999999999999999999874
No 78
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.08 E-value=0.00078 Score=50.38 Aligned_cols=33 Identities=12% Similarity=0.430 Sum_probs=30.4
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.-.|+||.+|+|.++++++||.|+.||+|+.|+
T Consensus 2 ~~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve 34 (71)
T PRK05889 2 AEDVRAEIVASVLEVVVNEGDQIGKGDTLVLLE 34 (71)
T ss_pred CcEEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 346999999999999999999999999999875
No 79
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=97.08 E-value=0.0016 Score=63.23 Aligned_cols=66 Identities=24% Similarity=0.169 Sum_probs=53.7
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
...|+||..|.|+ ++++.||.|++||+|+.|-.- ....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 289 ~~~v~Ap~~Gl~~--------~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGGMVV--------YRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCeEEE--------EecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCccccCCCeEEEe
Confidence 4479999999998 489999999999999988542 222336999999996555 67789999999987
No 80
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00094 Score=56.72 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=37.6
Q ss_pred ccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAE 267 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve 267 (283)
-+-++|+.|++|+.++.||.-|...+|.||.+|+|++++-+
T Consensus 45 elpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~ 85 (131)
T COG0509 45 ELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA 85 (131)
T ss_pred EcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence 36689999999999999999999999999999999998743
No 81
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.87 E-value=0.0027 Score=59.52 Aligned_cols=64 Identities=28% Similarity=0.407 Sum_probs=51.5
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe--cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA--MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 279 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa--mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~ 279 (283)
...++||..|.|+ ++++.||.|++||+|+.|-. .....+|+||.+|+|.-+. ..-.|..|+.|+
T Consensus 223 ~~~v~Ap~~G~~~--------~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l~ 288 (288)
T cd06254 223 VYYVTSPASGLWY--------PFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPLA 288 (288)
T ss_pred CEEEecCCCeEEE--------EecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCccC
Confidence 3579999999998 58999999999999999844 3557899999999997665 345677777663
No 82
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.82 E-value=0.0015 Score=52.99 Aligned_cols=39 Identities=46% Similarity=0.585 Sum_probs=34.9
Q ss_pred ccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEc
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 266 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilv 266 (283)
+.|++||+|++||.|+..+. -+...|.|+++|+|+.|.-
T Consensus 44 p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~ 82 (101)
T PF13375_consen 44 PVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK 82 (101)
T ss_pred EEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence 89999999999999999975 5578999999999998763
No 83
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.80 E-value=0.0033 Score=60.12 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=28.4
Q ss_pred eEecCCCeEEEEEEc-CCCCccCCCCeEEEEcC
Q 023356 252 EIEADQSGTIAEILA-EDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 252 eI~Ap~sGvV~~Ilv-e~Gd~V~~G~pL~~Iep 283 (283)
.|+||++|+|..+.+ ..|+.|..|++|+.|.|
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~ 305 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVP 305 (423)
T ss_pred EEECCCCcEEEEEEEEccCceecCCCeeEEEec
Confidence 699999999999876 79999999999998854
No 84
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.68 E-value=0.0027 Score=47.09 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=30.8
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
|..|.|+..|+|.+++++.||.|+.|++|+.|+
T Consensus 1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve 33 (70)
T PRK08225 1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILE 33 (70)
T ss_pred CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 457999999999999999999999999999886
No 85
>PRK06748 hypothetical protein; Validated
Probab=96.63 E-value=0.0037 Score=49.17 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=30.9
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..-|+||..|+|.++++++||.|..|++|+.|+
T Consensus 4 ~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IE 36 (83)
T PRK06748 4 IEGVYSPCYGKVEKLFVRESSYVYEWEKLALIE 36 (83)
T ss_pred eeEEecCCcEEEEEEEeCCCCEECCCCEEEEEE
Confidence 456899999999999999999999999999986
No 86
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.48 E-value=0.0071 Score=58.55 Aligned_cols=66 Identities=29% Similarity=0.341 Sum_probs=51.8
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec---CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM---KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam---K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
...|+||-.|.|. ..|+.||.|++||+|+.|-.+ +...||+|+++|+|..... --.|..|+.++.+
T Consensus 256 ~~~i~Ap~~G~v~--------~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~v 324 (331)
T COG3608 256 DEMIRAPAGGLVE--------FLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKVV 324 (331)
T ss_pred cceeecCCCceEE--------EeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeeee
Confidence 3469999999887 589999999999999999776 6778999999999977652 2245555555543
No 87
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.41 E-value=0.0043 Score=44.16 Aligned_cols=31 Identities=32% Similarity=0.624 Sum_probs=29.0
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 252 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 252 eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|+||.+|+|.+++++.|+.|+.|++|+.|+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~ 31 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLE 31 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 3789999999999999999999999999886
No 88
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.92 E-value=0.0096 Score=50.63 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=31.7
Q ss_pred eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 249 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 249 ~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-.+.|+||..|++.+++|+.||.|..||.|+.|+
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEE
Confidence 4567999999999999999999999999999986
No 89
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=95.77 E-value=0.022 Score=50.25 Aligned_cols=65 Identities=28% Similarity=0.421 Sum_probs=48.5
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeC----CceEEEEEecCeeeeEecCCCeEEE--------------------
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIA-------------------- 262 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~----Gq~L~iIEamK~~~eI~Ap~sGvV~-------------------- 262 (283)
..|.||+.|++.. +-++-|.|=. |+-+++.-.. ..|.||++|+|.
T Consensus 21 ~~i~aP~~G~vi~--------L~~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiL 89 (169)
T PRK09439 21 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELF 89 (169)
T ss_pred eEEEecCCeEEEE--------hHHCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEE
Confidence 3578888888885 4555665544 6667765543 677888888776
Q ss_pred ---------------EEEcCCCCccCCCCeEEEEc
Q 023356 263 ---------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 263 ---------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+++|+.||.|..||+|+++.
T Consensus 90 IHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 90 VHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred EEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 56789999999999999874
No 90
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.76 E-value=0.026 Score=53.23 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=43.2
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec--CeeeeEecCCCeEEEEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM--KLMNEIEADQSGTIAEI 264 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam--K~~~eI~Ap~sGvV~~I 264 (283)
...|+||..|.|+ +.++.||.|++||+|+.|-.. ....+++||.+|+|..+
T Consensus 231 ~~~v~Ap~~Gi~~--------~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGGLFE--------PSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCeEEE--------EecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 4579999999998 489999999999999998552 34567999999999766
No 91
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.75 E-value=0.015 Score=49.35 Aligned_cols=33 Identities=27% Similarity=0.534 Sum_probs=30.5
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|+|+.+|+|.++++++||.|+.|++|+.|+
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lE 93 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILE 93 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 345899999999999999999999999999986
No 92
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=95.69 E-value=0.014 Score=44.12 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=27.8
Q ss_pred eeEecCCCeEEEE------EEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAE------ILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~------Ilve~Gd~V~~G~pL~~Ie 282 (283)
++|++|..|.+.+ +++++||.|..|++|+.|+
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~ie 38 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIE 38 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEE
Confidence 4688888887655 9999999999999999986
No 93
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.68 E-value=0.019 Score=54.61 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=35.7
Q ss_pred EEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 242 CIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 242 ~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
+.|++. ...|.++.+|+|.+++|++||.|..|++|++|++
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 566654 6889999999999999999999999999999974
No 94
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=95.38 E-value=0.041 Score=50.76 Aligned_cols=66 Identities=27% Similarity=0.356 Sum_probs=53.6
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceE--EEEEec--CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVV--CIIEAM--KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L--~iIEam--K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..++||..|.|+ +.++.||.|++||+| +.+-.. ....+|+|+.+|+|. .....-.|..|+.|+.|.
T Consensus 221 ~~~~a~~~G~~~--------~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 221 EWVRAPAGGLFE--------PEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESPYVEQGDALAKVA 290 (292)
T ss_dssp CEEESSSSEEEE--------ETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSSECTTTEEEEEEE
T ss_pred eeecCCccEEEE--------EeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcccccCCCCeEEEEe
Confidence 368999999998 489999999999999 655432 344689999999984 445777899999999873
No 95
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.33 E-value=0.023 Score=49.35 Aligned_cols=32 Identities=34% Similarity=0.551 Sum_probs=30.0
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+||.+|+|.++++++||.|+.||.|+.|+
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iE 116 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILE 116 (153)
T ss_pred CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEe
Confidence 56899999999999999999999999999885
No 96
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=95.31 E-value=0.023 Score=53.19 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=32.2
Q ss_pred eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 249 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 249 ~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
-...|.++.+|+|.+++|++||.|..||+|++|++
T Consensus 41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 36789999999999999999999999999999864
No 97
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=95.30 E-value=0.051 Score=45.55 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=17.6
Q ss_pred EEEcCCCCccCCCCeEEEEc
Q 023356 263 EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 263 ~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+++++.||.|..||+|+++.
T Consensus 83 ~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 83 TSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 67789999999999999874
No 98
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=95.30 E-value=0.056 Score=45.43 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=17.3
Q ss_pred EEEcCCCCccCCCCeEEEEc
Q 023356 263 EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 263 ~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+++++.||.|..|++|+++.
T Consensus 83 ~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 83 TSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 56788999999999999874
No 99
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=95.09 E-value=0.037 Score=53.56 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=41.8
Q ss_pred cCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 230 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 230 ~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
+.|+....-+..+.|++.. ...|.+.++|+|.++++++|+.|..||+|++|++
T Consensus 42 ~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~ 94 (385)
T PRK09859 42 SPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDP 94 (385)
T ss_pred EEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECc
Confidence 3343333444567777664 5679999999999999999999999999999975
No 100
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.07 E-value=0.043 Score=54.47 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=36.2
Q ss_pred EEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 242 CIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 242 ~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
+.|....-...|.+...|+|.+|+|++||.|..|++|++|.+
T Consensus 51 G~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 51 GTIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 345555557789999999999999999999999999999875
No 101
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=95.07 E-value=0.04 Score=54.25 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=42.1
Q ss_pred ccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 229 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 229 V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
++.|+.-..-+..+.|++. -...|.++.+|+|.++++++||.|..||+|++|.+
T Consensus 67 v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 67 ATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDP 120 (415)
T ss_pred EEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECc
Confidence 3344433333456777774 45679999999999999999999999999999964
No 102
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=95.06 E-value=0.045 Score=52.54 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=35.8
Q ss_pred eEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 240 VVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 240 ~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
.-+.|++.. ...|.++.+|.|.++++++||.|..|++|+.|++
T Consensus 52 ~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 52 ATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 345555543 4479999999999999999999999999999874
No 103
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=95.02 E-value=0.039 Score=53.29 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=37.7
Q ss_pred ceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 239 QVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 239 q~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
...+.|++.. ...|.++.+|+|.+++++.||.|..||+|+.|++
T Consensus 53 ~~~G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~ 96 (385)
T PRK09578 53 ELPGRLDAYR-QAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDP 96 (385)
T ss_pred EEEEEEEEee-EEEEeccCcEEEEEEECCCCCEEcCCCEEEEECC
Confidence 3456777653 5689999999999999999999999999999974
No 104
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.98 E-value=0.041 Score=52.63 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=37.0
Q ss_pred EEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 242 CIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 242 ~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+.|....-...|.++.+|+|++++|++||.|..|++|+.++
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELD 75 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence 46667777888999999999999999999999999999986
No 105
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=94.96 E-value=0.034 Score=54.28 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=32.3
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
...|.++++|+|.+++|++||.|..||+|++|++
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 7789999999999999999999999999999974
No 106
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=94.78 E-value=0.033 Score=55.98 Aligned_cols=39 Identities=26% Similarity=0.217 Sum_probs=34.1
Q ss_pred ccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEc
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 266 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilv 266 (283)
+.|++||+|++||.|+.-+.. ....|.||++|+|++|..
T Consensus 43 ~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 43 MKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 789999999999999986543 568899999999999954
No 107
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.78 E-value=0.035 Score=43.47 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=29.9
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
.|+||+.|++.. +.++.|+.|..|+.|+.|..+
T Consensus 1 ~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVS-------INVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEE-------EeCCCCCEECCCCEEEEEEcc
Confidence 489999999998 788999999999999998764
No 108
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=94.77 E-value=0.059 Score=50.89 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=34.8
Q ss_pred EEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 241 VCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 241 L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
-+.|+. -...|.++.+|+|++++|++||.|..|++|++|.+
T Consensus 36 ~G~v~~--~~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 36 YGNVDI--RTVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEEEee--EEEEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 344553 35689999999999999999999999999999863
No 109
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=94.76 E-value=0.068 Score=45.37 Aligned_cols=65 Identities=28% Similarity=0.429 Sum_probs=46.7
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEE----eCCceEEEEEecCeeeeEecCCCeEEE--------------------
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKV----QKGQVVCIIEAMKLMNEIEADQSGTIA-------------------- 262 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V----~~Gq~L~iIEamK~~~eI~Ap~sGvV~-------------------- 262 (283)
..|.||+.|++.. +-++-|.+ --|+-+++.=.. ..|.||++|+|.
T Consensus 3 ~~i~aPv~G~vi~--------l~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiL 71 (132)
T PF00358_consen 3 ITIYAPVSGKVIP--------LEEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEIL 71 (132)
T ss_dssp EEEE-SSSEEEEE--------GGGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSEEEE
T ss_pred eEEEeeCCcEEEE--------hhhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEE
Confidence 3588999999986 44555555 237788876554 478999999988
Q ss_pred ---------------EEEcCCCCccCCCCeEEEEc
Q 023356 263 ---------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 263 ---------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+.+++.||.|..||+|+++.
T Consensus 72 iHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 72 IHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp EE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred EEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence 67778889999999999864
No 110
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=94.66 E-value=0.042 Score=53.67 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=31.7
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
...|.+.++|.|++++|.+++.|..|++||+|.|
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~ 86 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDP 86 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECc
Confidence 4578899999999999999999999999999986
No 111
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.59 E-value=0.062 Score=52.59 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=34.5
Q ss_pred EEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 243 IIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 243 iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
.|....-...|.++.+|+|.+++|++||.|..|++|++|++
T Consensus 51 ~l~~~~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 51 ILILSSGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred EEccCCceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 33333445689999999999999999999999999999864
No 112
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=94.54 E-value=0.067 Score=52.09 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=35.8
Q ss_pred EEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 241 VCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 241 L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
.+.|++ .-..+|.+.++|+|.++++++||.|..||+|++|++
T Consensus 57 ~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~ 98 (397)
T PRK15030 57 PGRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 98 (397)
T ss_pred EEEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence 345555 336679999999999999999999999999999975
No 113
>PRK07051 hypothetical protein; Validated
Probab=94.49 E-value=0.048 Score=41.75 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=31.3
Q ss_pred eeeeEecCCCeEEEE-------EEcCCCCccCCCCeEEEEc
Q 023356 249 LMNEIEADQSGTIAE-------ILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 249 ~~~eI~Ap~sGvV~~-------Ilve~Gd~V~~G~pL~~Ie 282 (283)
++.+|+||..|++.+ +++++|+.|..|++|+.++
T Consensus 2 ~~~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve 42 (80)
T PRK07051 2 AQHEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIE 42 (80)
T ss_pred CccEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEE
Confidence 357899999999999 9999999999999999875
No 114
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=94.07 E-value=0.072 Score=50.43 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=31.0
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..|.++.+|+|.+++|++||.|..||+|++|++
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~ 80 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ 80 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence 569999999999999999999999999999874
No 115
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=94.01 E-value=0.072 Score=53.52 Aligned_cols=39 Identities=33% Similarity=0.285 Sum_probs=33.4
Q ss_pred ccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEc
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 266 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilv 266 (283)
+.|++||+|++||.|+.-... ....+.|+++|+|++|..
T Consensus 44 ~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 44 MKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 789999999999999965433 468899999999999953
No 116
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=93.84 E-value=0.095 Score=45.61 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=29.9
Q ss_pred ccccCCCEEeCCceEEEEEecCee-eeEecCCCeEEEEEE
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLM-NEIEADQSGTIAEIL 265 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~-~eI~Ap~sGvV~~Il 265 (283)
+.+.+||.|.+||.|+.|.+.|-. .-++||++|+|.-+.
T Consensus 94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 789999999999999999999966 579999999997765
No 117
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=93.79 E-value=0.063 Score=53.42 Aligned_cols=39 Identities=41% Similarity=0.479 Sum_probs=34.1
Q ss_pred CccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEE
Q 023356 226 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL 265 (283)
Q Consensus 226 ~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Il 265 (283)
.+.|++||+|++||.|+..+ ......|.|+++|+|++|.
T Consensus 44 ~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 44 EPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred ceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 37999999999999999983 3357899999999999985
No 118
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.70 E-value=0.12 Score=48.62 Aligned_cols=39 Identities=31% Similarity=0.354 Sum_probs=32.4
Q ss_pred ccccCCCEEeCCceEEEEEecCee--eeEecCCCeEEEEEEcCC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLM--NEIEADQSGTIAEILAED 268 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~--~eI~Ap~sGvV~~Ilve~ 268 (283)
..|++||+|++||.|++ +|-. .-..||++|+|++|..-+
T Consensus 43 m~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 43 MLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred EEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCC
Confidence 68999999999999998 4433 457899999999988633
No 119
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=93.68 E-value=0.13 Score=45.00 Aligned_cols=65 Identities=29% Similarity=0.402 Sum_probs=45.4
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEe----CCceEEEEEecCeeeeEecCCCeEEE--------------------
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQ----KGQVVCIIEAMKLMNEIEADQSGTIA-------------------- 262 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~----~Gq~L~iIEamK~~~eI~Ap~sGvV~-------------------- 262 (283)
..|.||+.|.+... -++-|.|= -||-+++.=+ ..+|.||++|+|.
T Consensus 6 ~~i~sP~~G~vv~L--------s~VpD~vFs~k~mGdGiAI~P~---~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiL 74 (156)
T COG2190 6 EEIYSPLSGEVVPL--------SDVPDPVFSEKMVGDGVAIKPS---EGEVVAPVDGTVVLIFPTKHAIGIETDEGVEIL 74 (156)
T ss_pred EEEEccCCceEEEc--------hhCCchHhhcccccCcEEEecC---CCeEEeccCcEEEEEeeCCcEEEEEcCCCcEEE
Confidence 46889999988853 33333332 2566665433 3677788888766
Q ss_pred ---------------EEEcCCCCccCCCCeEEEEc
Q 023356 263 ---------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 263 ---------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+.++++||.|..||+|+++.
T Consensus 75 iHiGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 75 IHIGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred EEeceeeEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence 67889999999999999863
No 120
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=92.94 E-value=0.2 Score=52.35 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=51.3
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeC----CceEEEEEecCeeeeEecCCCeEEE---------------------
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIA--------------------- 262 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~----Gq~L~iIEamK~~~eI~Ap~sGvV~--------------------- 262 (283)
.|.||+.|++.. +-++.|.|=. ||-+++.=.+ ..|.||++|+|+
T Consensus 480 ~i~aP~~G~v~~--------L~~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLi 548 (627)
T PRK09824 480 GICSPMTGEVVP--------LEQVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLI 548 (627)
T ss_pred hcccccceEEee--------HHHCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEE
Confidence 589999999985 6677777766 7777765443 588999999887
Q ss_pred --------------EEEcCCCCccCCCCeEEEEc
Q 023356 263 --------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 263 --------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+.++++||.|..||+|++++
T Consensus 549 HiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 549 HVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred EechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence 67788999999999999874
No 121
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=92.80 E-value=0.24 Score=44.91 Aligned_cols=45 Identities=29% Similarity=0.320 Sum_probs=36.3
Q ss_pred CceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 238 GQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 238 Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
-...+.+++ .....|.+...|.|.++++++||.|..|++|+.+++
T Consensus 55 ~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 55 VRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 344455665 334478888999999999999999999999999864
No 122
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=92.80 E-value=0.075 Score=46.86 Aligned_cols=46 Identities=33% Similarity=0.493 Sum_probs=39.4
Q ss_pred CCCccc---cCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCC
Q 023356 224 GEPAFV---KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG 269 (283)
Q Consensus 224 ~~~~~V---~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~G 269 (283)
+.-||| ++|..|.+|+-++.+|.-|...+|.+|++|+|++|+-+-.
T Consensus 80 Gdvv~veLPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~ 128 (172)
T KOG3373|consen 80 GDVVYVELPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLE 128 (172)
T ss_pred CceEEEEcCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccc
Confidence 333554 7899999999999999999999999999999999985433
No 123
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=92.63 E-value=0.092 Score=53.62 Aligned_cols=37 Identities=46% Similarity=0.553 Sum_probs=34.4
Q ss_pred ccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEE
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL 265 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Il 265 (283)
++|++||+|.+||.|..=+. .+..+.||.+|+|++|.
T Consensus 47 ~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 47 LLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred eEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 78999999999999988775 89999999999999998
No 124
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=92.61 E-value=0.14 Score=56.81 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=53.9
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..+...+.|..+. ..|+.|+.+..++.....+.. -...|.|+..|+|.+++++.||.|..|++|+.|+
T Consensus 1039 r~v~fElNGq~re-------V~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iE 1106 (1143)
T TIGR01235 1039 REVFFELNGQPRR-------IKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLE 1106 (1143)
T ss_pred EEEEEEECCeEEE-------EEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEE
Confidence 4567778888776 678888877777665444322 2346999999999999999999999999999986
No 125
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=92.44 E-value=0.085 Score=48.06 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=22.2
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
.|.++..|++.. .+|++||.|++||+|+.|+.
T Consensus 3 ~Vq~~~~G~V~~-------i~V~eG~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 3 IVQSLVGGIVTE-------ILVKEGQRVKKGQVLARLDP 34 (305)
T ss_dssp EE--SS-EEEEE-------E-S-TTEEE-TTSECEEE--
T ss_pred EEeCCCCeEEEE-------EEccCcCEEeCCCEEEEEEe
Confidence 477889999998 89999999999999999975
No 126
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=92.27 E-value=0.16 Score=53.80 Aligned_cols=38 Identities=37% Similarity=0.441 Sum_probs=32.6
Q ss_pred ccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEE
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL 265 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Il 265 (283)
+.|++||+|.+||.|+.-+ .-....|.||.+|+|+.|.
T Consensus 51 ~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 51 LCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred ceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 7999999999999999653 2256899999999999985
No 127
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=92.25 E-value=0.31 Score=50.73 Aligned_cols=64 Identities=31% Similarity=0.457 Sum_probs=48.6
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeC----CceEEEEEecCeeeeEecCCCeEEE---------------------
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIA--------------------- 262 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~----Gq~L~iIEamK~~~eI~Ap~sGvV~--------------------- 262 (283)
.|.||..|++.. +-++-|.|=. ||-+++.-. ...|.||++|+|.
T Consensus 464 ~i~aP~~G~~~~--------l~~v~D~vFs~~~~G~G~ai~P~---~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eili 532 (610)
T TIGR01995 464 SLYAPVAGEMLP--------LNEVPDEVFSSGAMGKGIAILPT---EGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILI 532 (610)
T ss_pred eeccccceEEee--------HhhCCCccccccCcCCceEeeCC---CCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEE
Confidence 588999999885 5566666555 666666543 3578888888777
Q ss_pred --------------EEEcCCCCccCCCCeEEEEc
Q 023356 263 --------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 263 --------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+.++++||.|..||+|+++.
T Consensus 533 HiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 533 HVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred EeccchhccCCCCeEEEecCcCEEcCCCEEEEec
Confidence 67789999999999999874
No 128
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=92.18 E-value=0.25 Score=48.57 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=36.3
Q ss_pred eEEEEEecC-eeeeEecCCCeEEEEEE-cCCCCccCCCCeEEEEc
Q 023356 240 VVCIIEAMK-LMNEIEADQSGTIAEIL-AEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 240 ~L~iIEamK-~~~eI~Ap~sGvV~~Il-ve~Gd~V~~G~pL~~Ie 282 (283)
..+.|+.+. ....|.+.++|.|.+++ +..||.|..||+|++|.
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~ 156 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 156 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEe
Confidence 356666544 34589999999999998 99999999999999986
No 129
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=92.18 E-value=0.19 Score=45.16 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=29.5
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+||.+|+|..+.+..|+.|..|++|+.|.
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 36899999999999999999999999999874
No 130
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=92.14 E-value=0.35 Score=50.83 Aligned_cols=66 Identities=26% Similarity=0.378 Sum_probs=49.9
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeC----CceEEEEEecCeeeeEecCCCeEEE-------------------
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIA------------------- 262 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~----Gq~L~iIEamK~~~eI~Ap~sGvV~------------------- 262 (283)
...|.||+.|++.. +-++-|.|=. |+-++++-++ ..|.||++|+|+
T Consensus 498 ~~~v~aP~~G~vi~--------l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~ei 566 (648)
T PRK10255 498 IAELVSPITGDVVA--------LDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEI 566 (648)
T ss_pred ceEEEecCCcEEEE--------cccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEE
Confidence 34589999999986 4455554433 6777766554 588899999887
Q ss_pred ----------------EEEcCCCCccCCCCeEEEEc
Q 023356 263 ----------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 263 ----------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+.+|++||.|..||+|+++.
T Consensus 567 LIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 567 VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred EEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence 45688999999999999874
No 131
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.16 E-value=0.25 Score=51.49 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=30.4
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+|.||..|+|.+++|+.||.|..|++|+.|+
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iE 557 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIE 557 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEE
Confidence 46999999999999999999999999999986
No 132
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=90.84 E-value=0.68 Score=40.93 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=32.8
Q ss_pred ccccCCCEEeCCceEEEEEecC-------eeeeEecCCCeEEEEEEcCCCCccCCCCe-EEEEc
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMK-------LMNEIEADQSGTIAEILAEDGKSVSVDTP-LLVIV 282 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK-------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~p-L~~Ie 282 (283)
.+|++||+|++||.|+.+.-.. ....|.-.-...+..+....| .|..|+. |+.|+
T Consensus 106 ~~Vk~Gd~Vk~G~~L~~~D~~~i~~~g~~~~~~vvitn~~~~~~~~~~~~-~v~~g~~~~~~i~ 168 (169)
T PRK09439 106 RIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG-SVTAGETPVIRVK 168 (169)
T ss_pred EEecCCCEEeCCCEEEEEcHHHHHhcCCCCeEEEEEeccccccceecccC-ceecCCeEEEEEe
Confidence 7899999999999999886532 223333222233333333445 4666664 55553
No 133
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=90.80 E-value=0.41 Score=43.08 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=39.7
Q ss_pred cccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023356 228 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 279 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~ 279 (283)
++++|+.+++||.++.++-. ....+.-|.+ .++.|+.||.|..|+.++
T Consensus 155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi 202 (206)
T PRK05305 155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVL 202 (206)
T ss_pred eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEE
Confidence 67899999999999999987 4555666665 388999999999998553
No 134
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.70 E-value=0.29 Score=47.94 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=30.1
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 285 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLE 285 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEE
Confidence 67999999999999999999999999999884
No 135
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=90.55 E-value=0.59 Score=48.74 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=49.8
Q ss_pred CCCccCCcCeEEEccCCCC----------C------------------CccccCCCEEeCCceEEEEEecC-------ee
Q 023356 206 HPPLKCPMAGTFYRCPAPG----------E------------------PAFVKVGDKVQKGQVVCIIEAMK-------LM 250 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~----------~------------------~~~V~vGd~V~~Gq~L~iIEamK-------~~ 250 (283)
...|.||..|++....+-. . +.+|++||+|++||.|+.+.-.. ..
T Consensus 499 ~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~ 578 (610)
T TIGR01995 499 EGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPT 578 (610)
T ss_pred CCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCe
Confidence 3578899998876543211 1 17899999999999999886543 23
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
..|.-.-......+....+..|..|+.++.+
T Consensus 579 ~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 579 TPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred eEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 3333332333334455556679999988875
No 136
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=90.49 E-value=0.22 Score=43.18 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=30.1
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE 245 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIE 245 (283)
...|+|+..|++.+ ++++.||.|+.||.|+.|+
T Consensus 124 ~~eI~A~~~G~v~~-------i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 124 MNEIEAEVAGKVVE-------ILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred ceEEecCCCcEEEE-------EEeCCCCEECCCCEEEEEC
Confidence 34699999999999 8999999999999999985
No 137
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=90.42 E-value=0.48 Score=42.10 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=39.9
Q ss_pred cccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023356 228 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 279 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~ 279 (283)
++++|+.+++||.++.++-. ....+.-|.+ .++.++.|+.|..|+.|+
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 67899999999999999977 4455666665 378899999999999775
No 138
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=90.29 E-value=0.34 Score=45.88 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=27.9
Q ss_pred EecCCCeEEEE-------EEcCCCCccCCCCeEEEEc
Q 023356 253 IEADQSGTIAE-------ILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 253 I~Ap~sGvV~~-------Ilve~Gd~V~~G~pL~~Ie 282 (283)
|.||..|+|.+ ++++.||.|+.||.|+.|+
T Consensus 200 V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIE 236 (274)
T PLN02983 200 LKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIE 236 (274)
T ss_pred EeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEE
Confidence 78999999998 5999999999999999986
No 139
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=90.11 E-value=0.26 Score=42.63 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.2
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE 245 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIE 245 (283)
...|+||..|++.+ ++++.|+.|..||.|+.|+
T Consensus 123 ~~eI~a~~~G~i~~-------i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 123 MNEIEADKSGVVTE-------ILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred ceEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEeC
Confidence 34799999999999 8999999999999999885
No 140
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.79 E-value=0.37 Score=49.96 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=30.9
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-..|.||..|+|.+++|++||.|..|++|+.|+
T Consensus 517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iE 549 (582)
T TIGR01108 517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILE 549 (582)
T ss_pred CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 357999999999999999999999999999986
No 141
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=89.63 E-value=0.4 Score=49.91 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=30.8
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-..|.||..|+|.+++|++||.|+.|++|+.|+
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iE 556 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILE 556 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 347999999999999999999999999999986
No 142
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=89.62 E-value=0.49 Score=46.74 Aligned_cols=39 Identities=33% Similarity=0.336 Sum_probs=32.5
Q ss_pred ccccCCCEEeCCceEEEEEecCee--eeEecCCCeEEEEEEcCC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLM--NEIEADQSGTIAEILAED 268 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~--~eI~Ap~sGvV~~Ilve~ 268 (283)
..|++||.|++||+|++ +|.. .-++||++|+|++|+..+
T Consensus 43 mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 43 MKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred ceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence 68999999999999987 4433 468999999999998544
No 143
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=89.39 E-value=0.38 Score=44.69 Aligned_cols=35 Identities=20% Similarity=0.489 Sum_probs=31.8
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK 248 (283)
..|+||..|++.. .++++||.|..||+|+.|+.+.
T Consensus 46 ~~~~a~~~g~~~~-------~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 46 NEVEAPAAGTLRR-------QVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred EEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEEecCC
Confidence 4699999999998 7999999999999999998753
No 144
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=89.36 E-value=0.85 Score=47.85 Aligned_cols=76 Identities=28% Similarity=0.364 Sum_probs=48.0
Q ss_pred CCCccCCcCeEEEccCCCC----------C------------------CccccCCCEEeCCceEEEEEecC-------ee
Q 023356 206 HPPLKCPMAGTFYRCPAPG----------E------------------PAFVKVGDKVQKGQVVCIIEAMK-------LM 250 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~----------~------------------~~~V~vGd~V~~Gq~L~iIEamK-------~~ 250 (283)
...|.||..|++....+-. . ..+|++||+|++||.|+.+.-.. ..
T Consensus 515 ~~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~ 594 (627)
T PRK09824 515 VGEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLT 594 (627)
T ss_pred CCeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCe
Confidence 3579999999876532211 1 28899999999999999886542 22
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
..|.-.-......+....+..|..|++|+.+
T Consensus 595 ~~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 595 TPVLISNSDDYTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred EEEEEEccccccceeeccCCcccCCCeEEEe
Confidence 2222222222223334455669999988876
No 145
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=88.75 E-value=0.57 Score=35.91 Aligned_cols=29 Identities=38% Similarity=0.488 Sum_probs=21.2
Q ss_pred CCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC
Q 023356 211 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 211 AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK 248 (283)
-+.+|... +++.||.|++||+||.|=+..
T Consensus 29 D~~vGi~l---------~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 29 DPAVGIEL---------HKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp -TT-EEEE---------SS-TTSEEBTTSEEEEEEESS
T ss_pred CcCcCeEe---------cCcCcCEECCCCeEEEEEcCC
Confidence 35677765 589999999999999986643
No 146
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.59 E-value=0.54 Score=48.89 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=30.9
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|.|+.+|+|.++++++||.|+.|++|+.|+
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ie 554 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLE 554 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEe
Confidence 357999999999999999999999999999986
No 147
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=88.03 E-value=0.53 Score=48.87 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=29.4
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 252 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 252 eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+.||..|+|+.++|++|+.|..||+|+.++
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlE 607 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLE 607 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeE
Confidence 4899999999999999999999999999876
No 148
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=87.68 E-value=0.43 Score=48.32 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=31.9
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
...|.||..|++.. +++++||.|..||+||.|+..
T Consensus 134 ~~eI~Ap~~G~v~~-------ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 134 TIDIASPASGVIQE-------FLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred eeEEecCCCeEEEE-------EEeCCCCEecCCCEEEEeccC
Confidence 34799999999998 899999999999999999854
No 149
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=87.65 E-value=0.71 Score=41.11 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=47.8
Q ss_pred CccCCcCeEEEccCCCCCCccc--cCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEE
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFV--KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLV 280 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V--~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~ 280 (283)
.|-+-++|.+.. .+ ++|+.|++||.++.++= .-...+.-|.+- +.++.++.|+.|..|+.|++
T Consensus 138 ~Vga~~v~~I~~--------~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~-~~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 138 QVGALLVGSIVL--------TVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDK-IFEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred EeccceeceeEE--------EecccCCCEEecCcEeCEEec-CCeEEEEEeCCC-ccccccCCCCEEEeeeEEeC
Confidence 466677777764 45 68999999999999997 444445545443 33899999999999999863
No 150
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=87.64 E-value=0.53 Score=34.55 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=28.1
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEE
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCII 244 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iI 244 (283)
..|+||..|++.+ ++++.|+.|..|+.|+.|
T Consensus 43 ~~i~ap~~G~v~~-------~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 43 SDVEAPKSGTVKK-------VLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEcCCCEEEEE-------EEeCCCCEECCCCEEEEC
Confidence 4699999999998 789999999999999864
No 151
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=87.20 E-value=0.61 Score=45.69 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=31.1
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
...|+||.+|+|.+..+..|+.|..|.+|+.+-|
T Consensus 208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp 241 (352)
T COG1566 208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVP 241 (352)
T ss_pred CCEEECCCCceEEeecccCCCeecCCCceEEEec
Confidence 4689999999999999999999999999998743
No 152
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=86.43 E-value=1.3 Score=46.75 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=46.7
Q ss_pred CCCccCCcCeEEEccCCCCC----------------------------CccccCCCEEeCCceEEEEEecCe-------e
Q 023356 206 HPPLKCPMAGTFYRCPAPGE----------------------------PAFVKVGDKVQKGQVVCIIEAMKL-------M 250 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~----------------------------~~~V~vGd~V~~Gq~L~iIEamK~-------~ 250 (283)
...|.||..|++....+-.. ..+|++||+|++||.|+.+.-.++ .
T Consensus 535 ~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i~~~g~~~~ 614 (648)
T PRK10255 535 DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMI 614 (648)
T ss_pred CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCe
Confidence 45899999998775432211 177999999999999998865432 2
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCC-eEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDT-PLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~-pL~~Ie 282 (283)
..|.-.-......+.......|..|+ +|+.++
T Consensus 615 ~~vvvtN~~~~~~~~~~~~~~v~~g~~~~~~i~ 647 (648)
T PRK10255 615 SPVVCSNIDDFSGLIIKAQGHVVAGQTPLYEIK 647 (648)
T ss_pred EEEEEEccccccceeeccCCceecCCceEEEEc
Confidence 33322222222223333333466665 688775
No 153
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=85.87 E-value=0.85 Score=51.13 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=30.6
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|.|+..|+|.++++++||.|+.|++|++|+
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iE 1164 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILE 1164 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 346999999999999999999999999999986
No 154
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=85.71 E-value=1.1 Score=30.84 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=25.7
Q ss_pred cCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 255 ADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 255 Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+..+|.|..+++..|+.|.+|++|+.++
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~ 38 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVE 38 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEE
Confidence 6788999999999999999999999874
No 155
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=84.25 E-value=1.4 Score=37.01 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.6
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
.+|++||+|++||.|+.+.-.
T Consensus 84 ~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 84 SHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred EEecCCCEEcCCCEEEEEcHH
Confidence 789999999999999988643
No 156
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.24 E-value=1.1 Score=44.57 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=29.5
Q ss_pred eeeEecCCCeEEEEEEcCCC-CccCCCCeEEEEcC
Q 023356 250 MNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIVP 283 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~G-d~V~~G~pL~~Iep 283 (283)
...|+||++|+|....+..| +.|..|++|+.|-|
T Consensus 316 ~~~I~AP~dG~V~~~~~~~G~~~V~~G~~l~~IvP 350 (457)
T TIGR01000 316 KGVIKAPEDGVLHLNPETKGIKYVPKGTLIAQIYP 350 (457)
T ss_pred CCEEECCCCeEEEecccCCCCcEeCCCCEEEEEec
Confidence 57899999999997778888 68999999998754
No 157
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=84.14 E-value=0.99 Score=45.18 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 257 QSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 257 ~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+|.+|++++||.|+.||+|+.|+
T Consensus 57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vE 82 (418)
T PTZ00144 57 SEGTVVEWKKKVGDYVKEDEVICIIE 82 (418)
T ss_pred ceEEEEEEEeCCCCEeCCCCEEEEEE
Confidence 46899999999999999999999986
No 158
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=83.96 E-value=0.97 Score=38.39 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=17.3
Q ss_pred ccccCCCEEeCCceEEEEEecCe
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKL 249 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~ 249 (283)
++|++||+|++||.|+.+.-.++
T Consensus 88 ~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 88 TLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp ESS-TTSEE-TTEEEEEE-HHHH
T ss_pred EEEeCCCEEECCCEEEEEcHHHH
Confidence 88999999999999999876543
No 159
>PRK12999 pyruvate carboxylase; Reviewed
Probab=82.46 E-value=1.5 Score=49.05 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=30.3
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|.|+..|+|.+++++.||.|..||+|+.|+
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~le 1108 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIE 1108 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCCEECCCCEEEEEE
Confidence 56999999999999999999999999999886
No 160
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=81.85 E-value=1.9 Score=36.33 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.5
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
++|++||+|++||.|+.+.-.
T Consensus 84 ~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 84 SHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred EEecCCCEEcCCCEEEEEcHH
Confidence 789999999999999988643
No 161
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=80.36 E-value=1.5 Score=43.47 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK 248 (283)
...|.||..|++.. .++++||.|..|++|++|+...
T Consensus 45 ~~ei~a~~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 45 VLEVPAPAAGVLSE-------ILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence 34799999999988 8999999999999999998754
No 162
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=80.27 E-value=3.8 Score=40.37 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=30.3
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEE
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVC 242 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~ 242 (283)
.|.|-..|.+.+.-.-...+.|++||.|++||+|.
T Consensus 188 ~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLI 222 (382)
T TIGR02876 188 NIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLI 222 (382)
T ss_pred cEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence 58888899888876667779999999999999986
No 163
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=80.11 E-value=3.8 Score=40.27 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=39.2
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEE--EEEecCeeeeEecCCCeEEE
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVC--IIEAMKLMNEIEADQSGTIA 262 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~--iIEamK~~~eI~Ap~sGvV~ 262 (283)
.|.|-..|.+.+.-.-...+.|++||.|++||+|. .|+...-..+ -.++|.|.
T Consensus 191 ~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~--v~A~G~V~ 245 (385)
T PF06898_consen 191 NLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQE--VHADGDVK 245 (385)
T ss_pred ceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceE--ECCcEEEE
Confidence 57888889888876667779999999999999985 6665444444 34456553
No 164
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=79.97 E-value=3 Score=36.57 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=33.9
Q ss_pred ccccCCCEEeCCceEEEEEecC-------eeeeEecCCCeEE-EEEEcCCCCccCCCCeEEEE
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMK-------LMNEIEADQSGTI-AEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK-------~~~eI~Ap~sGvV-~~Ilve~Gd~V~~G~pL~~I 281 (283)
.+|++||+|++||.|+...-.. +..+|.-.-...+ .-+....+..|..|+.|+.+
T Consensus 91 ~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 91 SLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred EEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 7899999999999999886543 2233322222222 22233344477788887764
No 165
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=79.34 E-value=1.8 Score=38.93 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=28.3
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
.|+||+.|++.. .++.+|+.|..|+.|+.|-.
T Consensus 90 ~i~AP~dG~V~~-------~~~~~G~~v~~g~~l~~i~~ 121 (265)
T TIGR00999 90 EVRSPFDGYITQ-------KSVTLGDYVAPQAELFRVAD 121 (265)
T ss_pred EEECCCCeEEEE-------EEcCCCCEeCCCCceEEEEc
Confidence 479999999998 78999999999999997643
No 166
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=79.17 E-value=1.9 Score=39.56 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=31.1
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
...|+||+.|++.. ..++.|+.|..|+.|+.|...
T Consensus 134 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 134 YTEIRAPFDGTIGR-------RLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred cCEEECCCCcEEEE-------EEcCCCceeCCCCcEEEEEcC
Confidence 45799999999988 789999999999999988754
No 167
>PRK12784 hypothetical protein; Provisional
Probab=78.85 E-value=1.9 Score=33.92 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=31.4
Q ss_pred cCee-eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 247 MKLM-NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 247 mK~~-~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
||.+ -+|.||+-|+|.++++.+++.|-.=++||.|+
T Consensus 1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~ 37 (84)
T PRK12784 1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIR 37 (84)
T ss_pred CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEe
Confidence 4433 47999999999999999999999999999886
No 168
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=78.84 E-value=1.8 Score=47.01 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=29.5
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|-|+..|+|+++.|+.|+.|..||+|+.|+
T Consensus 1080 ~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038 1080 GHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred cccCCCCCCceEEEEEccCCeecCCCeeeehh
Confidence 35779999999999999999999999999876
No 169
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=77.90 E-value=1.6 Score=43.27 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=31.9
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
...|.||..|++.. .+|++||+|+.||.|+.|+..
T Consensus 115 tv~V~sP~sGvi~e-------~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 115 TVEVPSPASGVITE-------LLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeeccCCCcceeeE-------EecCCCCcccCCceeEEecCC
Confidence 34799999999998 799999999999999999875
No 170
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=77.59 E-value=1.9 Score=39.02 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=29.0
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
.|.+...|.+.. .+|++||.|++||+|..++.
T Consensus 68 ~v~~~~~G~v~~-------i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 68 EVLARVAGIVAE-------ILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eEecccccEEEE-------EEccCCCeecCCCEEEEECC
Confidence 577778899988 89999999999999999987
No 171
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=77.57 E-value=3.1 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=18.4
Q ss_pred CCCccccCCCEEeCCceEEEEE
Q 023356 224 GEPAFVKVGDKVQKGQVVCIIE 245 (283)
Q Consensus 224 ~~~~~V~vGd~V~~Gq~L~iIE 245 (283)
+...+|+.|+.|++||+||.-.
T Consensus 2421 ga~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2421 GAKLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred ccEEEecCCCEecCCCEEEEEc
Confidence 3447899999999999998754
No 172
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=77.53 E-value=2.3 Score=42.28 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.1
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK 248 (283)
..|-||..|++.. .++++||.|..|++|+.|+...
T Consensus 46 ~EV~ap~~G~l~~-------i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 46 MEVPAPDAGVLAK-------ILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred EEecCCCCeEEEE-------EeccCCCEEcCCCeEEEEecCC
Confidence 4699999999999 8999999999999999999863
No 173
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=77.48 E-value=2.1 Score=42.45 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=31.8
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
...|.||..|++.. +++++||.|..|++|++|+..
T Consensus 43 ~~ei~a~~~G~v~~-------i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 43 VLEVPSPADGVLQE-------ILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecC
Confidence 34799999999998 899999999999999999865
No 174
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=76.61 E-value=3.5 Score=38.62 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=39.3
Q ss_pred cccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 228 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
++..|+.|++||.++.++-+ -...+.-+.+ .+ ++.++.|+.|..|+.|..|
T Consensus 215 ~~~~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 215 YEYENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred eccCCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCCEEEcchhhccC
Confidence 34569999999999999986 4444555543 34 7789999999999998764
No 175
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.30 E-value=4.3 Score=35.21 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=42.5
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeee-eEecCCCeEEEEEE
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMN-EIEADQSGTIAEIL 265 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~-eI~Ap~sGvV~~Il 265 (283)
...-|.-|.++. +.+.+|+.|.+|+.++-+.+-|... =+.+|++|+|.-|.
T Consensus 93 ll~iPvEGYvVt-------pIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 93 LLLIPVEGYVVT-------PIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred EEEEecCcEEEE-------EeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 345577787777 7899999999999999999998764 68999999997654
No 176
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=75.42 E-value=7.4 Score=44.29 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=31.4
Q ss_pred ccccCCCEEeCCceEEEEEec-------CeeeeEecCCCeEEE
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM-------KLMNEIEADQSGTIA 262 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam-------K~~~eI~Ap~sGvV~ 262 (283)
.||+.|+.|+++|+|+++-+. |..-.|+|+.+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 789999999999999999874 456789999999864
No 177
>COG3608 Predicted deacylase [General function prediction only]
Probab=75.25 E-value=3.2 Score=40.50 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=28.2
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 252 EIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 252 eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
-|+||..|.| +.+++-||.|+.|+.|+.|.+
T Consensus 258 ~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~ 288 (331)
T COG3608 258 MIRAPAGGLV-EFLVDLGDKVEAGDVLATIHD 288 (331)
T ss_pred eeecCCCceE-EEeecCCCcccCCCeEEEEec
Confidence 4999999976 999999999999999999864
No 178
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=75.21 E-value=3.8 Score=47.13 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=44.9
Q ss_pred CCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 232 GDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 232 Gd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
|-.+.-|-..|.+|...--..+++|..|.+.+++|++|+.|..|++-++|+
T Consensus 667 ~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 667 GYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred eEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 455667788888888777788999999999999999999999999999875
No 179
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=72.43 E-value=3.4 Score=38.56 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=45.6
Q ss_pred ccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 209 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 209 I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
|-+-++|.+. +...|+.|++||.++.++-+ -...+.-+.+-.--+..+..|+.|..|+.|..+
T Consensus 196 Vga~~Vg~I~---------~~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 196 VGAMFVNSIE---------LTHERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred EeeEEeeEEE---------EecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 4455555554 24579999999999999988 555566665432235678899999999998754
No 180
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=71.75 E-value=4.2 Score=40.52 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=31.3
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK 248 (283)
..+.+|..|++.+ +++++||.|..|++|+.|+..+
T Consensus 42 ~ev~a~~~G~v~~-------i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 42 IEITSRYKGKVAQ-------INFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEeccC
Confidence 4689999999998 8999999999999999997543
No 181
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=70.99 E-value=8.1 Score=35.47 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=24.8
Q ss_pred CccCCcCeEEEccCCCCC------------------CccccCCCEEeCCceEEEEEec
Q 023356 208 PLKCPMAGTFYRCPAPGE------------------PAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~------------------~~~V~vGd~V~~Gq~L~iIEam 247 (283)
.|+||+.|++...-+.-+ ..++++|+.|..|+.|+.|-.+
T Consensus 136 ~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l~~i~~~ 193 (328)
T PF12700_consen 136 QIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPLFTIADL 193 (328)
T ss_dssp HEE-SSSEEEE------------EES----------E-TT-TT-EETSTTCSEEEEEE
T ss_pred ccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCceeeeeccC
Confidence 399999999990000000 2789999999999999977543
No 182
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=70.86 E-value=3.3 Score=44.35 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=29.3
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|-||..|+|.+|.|++|+.|..|++|+.+.
T Consensus 1107 g~igAPMpG~vieikvk~G~kV~Kgqpl~VLS 1138 (1176)
T KOG0369|consen 1107 GHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLS 1138 (1176)
T ss_pred ccccCCCCCceEEEEEecCceecCCCceEeee
Confidence 46889999999999999999999999999763
No 183
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=69.14 E-value=4.6 Score=40.46 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCE-EeCCceEEEEEec
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDK-VQKGQVVCIIEAM 247 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~-V~~Gq~L~iIEam 247 (283)
..|.||..|++.. +++++||. |..|++|++|+..
T Consensus 43 ~ei~a~~~G~l~~-------i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 43 MEFEAVEEGYLAK-------ILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred eEEcCCCCEEEEE-------EEECCCCEEecCCCEEEEEecc
Confidence 5799999999998 89999999 9999999999764
No 184
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=69.00 E-value=4 Score=42.28 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=28.3
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 252 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 252 eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-+.||..|+|++++|++||.|..|+.|+.+.
T Consensus 603 v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~ 633 (670)
T KOG0238|consen 603 VIVAPMPGIIEKVLVKPGDKVKEGQELVVLI 633 (670)
T ss_pred ceecCCCCeeeeeeccchhhhcccCceEEEE
Confidence 4789999999999999999999999988763
No 185
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=68.50 E-value=5.8 Score=37.46 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=29.6
Q ss_pred CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 248 KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 248 K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-...-|+||.+|++.. .++-||.|+.||.|+.|.
T Consensus 162 ~~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~ 195 (256)
T TIGR03309 162 THERVLRAPADGIVTP-TKAIGDSVKKGDVIATVG 195 (256)
T ss_pred cceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEc
Confidence 4467799999998854 999999999999999885
No 186
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=68.28 E-value=4.9 Score=31.18 Aligned_cols=20 Identities=45% Similarity=0.642 Sum_probs=17.0
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
|+++.|+.|++|++|+.++.
T Consensus 49 ~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 49 WLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp ESS-TT-EEETTCEEEEEEE
T ss_pred EEeCCCCCccCCcEEEEEEe
Confidence 89999999999999999985
No 187
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=66.13 E-value=6.6 Score=38.61 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=31.7
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK 248 (283)
..|.||..|++.. .++++|+.|..|++|+.|+...
T Consensus 46 ~~i~Ap~~G~i~~-------~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 46 VEIPSPVAGTVAK-------LLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEeCCCCeEEEE-------EecCCCCEeCCCCEEEEEecCC
Confidence 4699999999998 8999999999999999998654
No 188
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=65.38 E-value=8.4 Score=36.12 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=29.2
Q ss_pred CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 248 KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 248 K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+....|+|+.+|.+. ..++.||.|..||+|++|.
T Consensus 217 ~~~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~ 250 (287)
T cd06251 217 RSSVWVRAPQGGLLR-SLVKLGDKVKKGQLLATIT 250 (287)
T ss_pred cCCeEEecCCCeEEE-EecCCCCEECCCCEEEEEE
Confidence 344679999999884 6899999999999999884
No 189
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=64.43 E-value=8.8 Score=36.18 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=28.9
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..-|+|+.+|.+ +..++.|+.|..||.|++|.
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~ 262 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVV 262 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEE
Confidence 678999999977 78899999999999999984
No 190
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=63.51 E-value=12 Score=38.52 Aligned_cols=42 Identities=29% Similarity=0.344 Sum_probs=34.7
Q ss_pred EEEEEecCeeeeEecCCCeEEEE------------------------EEcCCCCccCCCCeEEEEc
Q 023356 241 VCIIEAMKLMNEIEADQSGTIAE------------------------ILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 241 L~iIEamK~~~eI~Ap~sGvV~~------------------------Ilve~Gd~V~~G~pL~~Ie 282 (283)
...+...+...+|.|+.+|.|.. ++++.||.|+.|++|++|.
T Consensus 404 ~~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~ 469 (493)
T TIGR02645 404 SDDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIY 469 (493)
T ss_pred ccccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEE
Confidence 34455667888999999999874 5789999999999999984
No 191
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=62.92 E-value=6.9 Score=40.54 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 257 QSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 257 ~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+|.+|++++||.|+.|++|+.|+
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVE 150 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVE 150 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEe
Confidence 45999999999999999999999986
No 192
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=61.16 E-value=10 Score=35.56 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=26.6
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEE
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE 245 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIE 245 (283)
+...|+||+.|++.. .++..|+.|.. +.|+.|-
T Consensus 203 ~~~~i~AP~dG~V~~-------~~~~~G~~v~~-~~l~~i~ 235 (327)
T TIGR02971 203 ELTYVKAPIDGRVLK-------IHAREGEVIGS-EGILEMG 235 (327)
T ss_pred hcCEEECCCCeEEEE-------EecCCCCccCC-CccEEEe
Confidence 345899999999998 78999999987 6666553
No 193
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=61.09 E-value=10 Score=35.94 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=28.5
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..-|+|+.+|.+ ..+++.|+.|..||.|++|.
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~ 260 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIV 260 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEe
Confidence 567999999977 67799999999999999984
No 194
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=60.83 E-value=12 Score=35.17 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=29.3
Q ss_pred CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 248 KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 248 K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.-..-++||.+|.+ +.+++.|+.|..||+|++|.
T Consensus 221 ~~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~ 254 (288)
T cd06254 221 DDVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVT 254 (288)
T ss_pred cCCEEEecCCCeEE-EEecCCCCEecCCCEEEEEE
Confidence 45567899999977 67889999999999999984
No 195
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=60.07 E-value=11 Score=36.71 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=27.6
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.-|+|+.+|.+ +.+++.|+.|+.|+.|++|.
T Consensus 290 ~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~ 320 (359)
T cd06250 290 EMLYAPAGGMV-VYRAAPGDWVEAGDVLAEIL 320 (359)
T ss_pred EEEeCCCCeEE-EEecCCCCEecCCCEEEEEE
Confidence 45999999977 78899999999999999984
No 196
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=59.94 E-value=15 Score=38.53 Aligned_cols=53 Identities=34% Similarity=0.594 Sum_probs=33.1
Q ss_pred ccccCCCEEeCCceEEEEEec-CeeeeEecC--CCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM-KLMNEIEAD--QSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam-K~~~eI~Ap--~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
+.+++||.|..||+|+.+.-. -..+-|-.| ..|+|++|. .+|+ ....+.++++
T Consensus 122 p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i~-~~G~-ytv~~~i~~~ 177 (586)
T PRK04192 122 PTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEIV-SEGD-YTVDDTIAVL 177 (586)
T ss_pred cccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEEc-cCCC-ceeeeEEEEE
Confidence 468999999999999987654 233333333 478887763 3443 2234444444
No 197
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=59.49 E-value=12 Score=36.05 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=27.3
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 252 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 252 eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-|+|+.+|.+ ...++.|+.|..||+|++|.
T Consensus 257 ~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~ 286 (325)
T TIGR02994 257 FIFAEDDGLI-EFMIDLGDPVSKGDVIARVY 286 (325)
T ss_pred EEEcCCCeEE-EEecCCCCEeCCCCEEEEEE
Confidence 5999999977 68899999999999999985
No 198
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=57.93 E-value=23 Score=35.20 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=31.3
Q ss_pred ccccCCCEEeCCceEEEEEec-CeeeeEecCC--CeEEEEEEcCCCC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM-KLMNEIEADQ--SGTIAEILAEDGK 270 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam-K~~~eI~Ap~--sGvV~~Ilve~Gd 270 (283)
+.+++||.|..||+++.+.-. -..+-|-.|- .|+|+.|. .+|+
T Consensus 53 p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~~-~~g~ 98 (369)
T cd01134 53 PLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIA-PAGD 98 (369)
T ss_pred eccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEEe-cCCC
Confidence 468999999999999987543 3566665554 89987754 3455
No 199
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=57.72 E-value=9.3 Score=29.22 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=19.2
Q ss_pred CCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 256 DQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 256 p~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+..|+ .++++-||.|+.|++|++|.
T Consensus 30 ~~vGi--~l~~k~Gd~V~~Gd~l~~i~ 54 (75)
T PF07831_consen 30 PAVGI--ELHKKVGDRVEKGDPLATIY 54 (75)
T ss_dssp TT-EE--EESS-TTSEEBTTSEEEEEE
T ss_pred cCcCe--EecCcCcCEECCCCeEEEEE
Confidence 34463 68899999999999999984
No 200
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=57.13 E-value=21 Score=33.95 Aligned_cols=34 Identities=24% Similarity=0.114 Sum_probs=29.3
Q ss_pred CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 248 KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 248 K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+...-|+||.+|.+ ...++.|+.|+.|++|++|.
T Consensus 242 ~~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~ 275 (316)
T cd06252 242 DARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIH 275 (316)
T ss_pred CCcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEE
Confidence 34567999999976 78899999999999999974
No 201
>PRK04350 thymidine phosphorylase; Provisional
Probab=56.34 E-value=19 Score=37.06 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=33.7
Q ss_pred EEEecCeeeeEecCCCeEEEE------------------------EEcCCCCccCCCCeEEEEc
Q 023356 243 IIEAMKLMNEIEADQSGTIAE------------------------ILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 243 iIEamK~~~eI~Ap~sGvV~~------------------------Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+..-+...+|.|+.+|.|.. ++++-||.|+.|++|++|.
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 355667888999999998874 5788999999999999985
No 202
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=56.07 E-value=21 Score=34.74 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=14.8
Q ss_pred EEEcCCCCccCCCCeEEEE
Q 023356 263 EILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 263 ~Ilve~Gd~V~~G~pL~~I 281 (283)
+++|++||.|..||.|.++
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~ 289 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATM 289 (319)
T ss_pred ccccCCcCEECCCCeEEeE
Confidence 4677888888888888765
No 203
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=55.93 E-value=23 Score=27.10 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=8.4
Q ss_pred CccCCcCeEEEc
Q 023356 208 PLKCPMAGTFYR 219 (283)
Q Consensus 208 ~I~AP~vGtf~~ 219 (283)
.|.||+.|++..
T Consensus 15 ~V~A~~~G~V~~ 26 (96)
T PF01551_consen 15 PVYAPADGKVVF 26 (96)
T ss_dssp EEEESSSEEEEE
T ss_pred EEEeCccEEEEE
Confidence 477777777664
No 204
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=55.89 E-value=10 Score=29.14 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=16.5
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
..|+.||.|++||.|+.+...
T Consensus 55 ~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 55 VSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESS-TTSEE-TTCEEEEEBSC
T ss_pred ccceecccccCCCEEEecCCC
Confidence 459999999999999999854
No 205
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=55.49 E-value=21 Score=33.31 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=35.6
Q ss_pred cccCCCEEeC-CceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 228 FVKVGDKVQK-GQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 228 ~V~vGd~V~~-Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
.+..|+.|.+ |++|+... -.++++|++|.| ++-....|..|+...++
T Consensus 225 ~~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~l 272 (272)
T cd06910 225 PFRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVRL 272 (272)
T ss_pred CcCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeeeC
Confidence 4677999999 99999943 389999999965 34455556678776653
No 206
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=55.26 E-value=13 Score=37.34 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=25.2
Q ss_pred CCccCCcCeEEEccC------------------------CCCCCccccCCCEEeCCceEEEEEe
Q 023356 207 PPLKCPMAGTFYRCP------------------------APGEPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p------------------------~~~~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
..|+|+..|++.... .-+...+++.||.|++||+||.|=+
T Consensus 334 ~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 334 EEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYS 397 (405)
T ss_pred EEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeC
Confidence 467888888887422 1222356677777777777776643
No 207
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=54.64 E-value=23 Score=39.44 Aligned_cols=54 Identities=26% Similarity=0.450 Sum_probs=36.2
Q ss_pred ccccCCCEEeCCceEEEEE-ecCeeeeEecCC--CeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 227 AFVKVGDKVQKGQVVCIIE-AMKLMNEIEADQ--SGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIE-amK~~~eI~Ap~--sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+.+++||+|..||+++.|. +.-+.+-|-.|. .|+|+.|. .+|+ ....+.+++|+
T Consensus 122 p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~~-~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 122 PKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEIA-DEGE-YTIEEVIAKVK 178 (1017)
T ss_pred eeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEEc-CCCC-cceeeEEEEEE
Confidence 4589999999999999875 433445554444 79998873 4565 23345666554
No 208
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=53.74 E-value=13 Score=37.69 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCC-EEeCCceEEEEEec
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGD-KVQKGQVVCIIEAM 247 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd-~V~~Gq~L~iIEam 247 (283)
..|.||..|++.. .++++|+ .|+.|++|++|+..
T Consensus 46 ~ev~A~~~G~v~~-------i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 46 MEVEAVDEGTLGK-------ILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred eeecCCCceEEEE-------EEecCCCcEeCCCCEEEEEccC
Confidence 5789999999998 8999995 79999999999653
No 209
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=53.45 E-value=21 Score=36.75 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=32.6
Q ss_pred EEecCeeeeEecCCCeEEEE------------------------EEcCCCCccCCCCeEEEEc
Q 023356 244 IEAMKLMNEIEADQSGTIAE------------------------ILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 244 IEamK~~~eI~Ap~sGvV~~------------------------Ilve~Gd~V~~G~pL~~Ie 282 (283)
+..-+...+|.|+.+|.|.. ++++-||.|+.|++|++|.
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 44567788899999998874 5788999999999999984
No 210
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=53.44 E-value=9.8 Score=35.02 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=37.0
Q ss_pred CCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEE
Q 023356 232 GDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLV 280 (283)
Q Consensus 232 Gd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~ 280 (283)
|+.|++||.++.++-. -...+.-+.+-.--+..+..|+.|..|+.|..
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999985 45555566432222678899999999998864
No 211
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=51.79 E-value=14 Score=32.23 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=24.9
Q ss_pred EEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 234 KVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 234 ~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+++|+.||.+++. |..+-+.+..|+.|..|+.|+.+.
T Consensus 75 ~l~~G~~L~l~~ve-----------G~~v~~i~~~G~rV~~gd~lA~v~ 112 (150)
T PF09891_consen 75 LLKKGTELCLVPVE-----------GYQVYPIVDEGDRVRKGDRLAYVT 112 (150)
T ss_dssp EE-TT-B-EEEEEE-----------SSEEEESS-TSEEE-TT-EEEEEE
T ss_pred EECCCCEEEEEEec-----------ceEEEEEcccCcEeccCcEEEEEE
Confidence 36788888888764 555577788999999999999874
No 212
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=51.65 E-value=30 Score=36.38 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=36.1
Q ss_pred cccCCCEEeCCceEEEE-EecCeeeeEecC--CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 228 FVKVGDKVQKGQVVCII-EAMKLMNEIEAD--QSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iI-EamK~~~eI~Ap--~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+++||.|..||+++.+ |+.-..+-|-.| .+|+|++|. .+|+ ....+.+++++
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i~-~~g~-ytv~~~i~~~~ 178 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYIA-PAGN-YTVDDTVLEVE 178 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEEc-cCCC-ceeeeEEEEEe
Confidence 68999999999999965 444445555555 469998774 4565 33355665553
No 213
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=50.99 E-value=12 Score=28.92 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCCccCCCCeEEEEc
Q 023356 259 GTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 259 GvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
|.-.+++++||+.|..|++|++++
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~ 67 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIE 67 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEE
Confidence 445579999999999999999985
No 214
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.89 E-value=21 Score=35.98 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=39.6
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
..|+||..|++..+ .||=.=| .|.+|+..+..+-|.+. .-.|+|..|+.|..|++|..+
T Consensus 332 a~V~A~AdG~VvyA-----~~l~GYG-------~vvIldhG~gy~slyg~----~~~i~v~~G~~V~AGepIa~~ 390 (420)
T COG4942 332 ATVKAIADGRVVYA-----DWLRGYG-------LVVILDHGGGYHSLYGG----NQSILVNPGQFVKAGEPIALV 390 (420)
T ss_pred CeeeeecCceEEec-----hhhccCc-------eEEEEEcCCccEEEecc----cceeeecCCCEeecCCchhhc
Confidence 35666666665442 2443222 34577888877777765 347889999999999998765
No 215
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=49.52 E-value=10 Score=35.75 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=25.5
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEE
Q 023356 252 EIEADQSGTIAEILAEDGKSVSVDTPLLV 280 (283)
Q Consensus 252 eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~ 280 (283)
-+-.++-|..-+++|++||.|..||+||+
T Consensus 31 l~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~ 59 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGDRVKAGQPLFE 59 (257)
T ss_pred EcCcccCCCCccEEeccCCEEeCCCeeEe
Confidence 35567888888999999999999999996
No 216
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=48.94 E-value=14 Score=37.58 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 258 SGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 258 sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|.|+.|..++||.++.|+.|++||
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVE 76 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVE 76 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEe
Confidence 5889999999999999999999997
No 217
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=47.89 E-value=29 Score=35.20 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=30.0
Q ss_pred ecCeeeeEecCCCeEEE-------------------------------EEEcCCCCccCCCCeEEEEc
Q 023356 246 AMKLMNEIEADQSGTIA-------------------------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 246 amK~~~eI~Ap~sGvV~-------------------------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.-+...+|+|+.+|.|. +++++.||.|..|++|++|.
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 35667788888888875 56788999999999999984
No 218
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=47.66 E-value=38 Score=38.51 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=30.6
Q ss_pred ccccCCCEEeCCceEEEEEec-------CeeeeEecCCCeEEE
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM-------KLMNEIEADQSGTIA 262 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam-------K~~~eI~Ap~sGvV~ 262 (283)
.||+.|+.|+.+|+|+++-+. |....|.++.+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~ 447 (1227)
T TIGR02388 405 LFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVK 447 (1227)
T ss_pred EEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEE
Confidence 789999999999999999874 455788899998764
No 219
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=46.54 E-value=32 Score=34.92 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=17.2
Q ss_pred EEEcCCCCccCCCCeEEEEc
Q 023356 263 EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 263 ~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.++++.||.|+.|++|++|.
T Consensus 383 ~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 383 TDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred EeccCCcCEeCCCCeEEEEE
Confidence 46778899999999999984
No 220
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=45.81 E-value=34 Score=34.31 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=30.5
Q ss_pred EEecCeeeeEecCCCeEEE-------------------------------EEEcCCCCccCCCCeEEEEc
Q 023356 244 IEAMKLMNEIEADQSGTIA-------------------------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 244 IEamK~~~eI~Ap~sGvV~-------------------------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+-.-+...+|.|+.+|.|. .++++.||.|..|++|++|.
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~ 396 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLY 396 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEe
Confidence 3445667778888888777 46778899999999999985
No 221
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=45.09 E-value=28 Score=39.90 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=19.9
Q ss_pred CCCCCccccCCCEEeCCceEEEE
Q 023356 222 APGEPAFVKVGDKVQKGQVVCII 244 (283)
Q Consensus 222 ~~~~~~~V~vGd~V~~Gq~L~iI 244 (283)
+++.-.++..||.|++||+|+.+
T Consensus 947 s~ga~~~~~~g~~v~~Gd~L~~l 969 (1331)
T PRK02597 947 SPGAVLHVRDGDLVQRGDNLALL 969 (1331)
T ss_pred CCCCEEEecCCCEecCCCeEEEE
Confidence 46777889999999999999976
No 222
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=44.67 E-value=16 Score=37.09 Aligned_cols=20 Identities=30% Similarity=0.747 Sum_probs=18.5
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
.+++.||.|++||+|+.|=+
T Consensus 384 l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 384 DLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred eccCCcCEeCCCCeEEEEEC
Confidence 78999999999999999874
No 223
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=44.47 E-value=44 Score=35.12 Aligned_cols=43 Identities=35% Similarity=0.588 Sum_probs=30.5
Q ss_pred ccccCCCEEeCCceEEEE-EecCeeeeEec--CCCeEEEEEEcCCCC
Q 023356 227 AFVKVGDKVQKGQVVCII-EAMKLMNEIEA--DQSGTIAEILAEDGK 270 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iI-EamK~~~eI~A--p~sGvV~~Ilve~Gd 270 (283)
+.+++||.|..||+++.+ |+.-..+.|-. .+.|+|+.|. .+|+
T Consensus 119 p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~-~~g~ 164 (578)
T TIGR01043 119 PTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEIA-EEGD 164 (578)
T ss_pred cccccCccccCCceEEEEecccceeeeeecCCCCcceEEEec-cCCC
Confidence 358999999999999977 55545554433 3579987774 3454
No 224
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=44.34 E-value=16 Score=36.98 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.4
Q ss_pred CccccCCCEEeCCceEEEEEec
Q 023356 226 PAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 226 ~~~V~vGd~V~~Gq~L~iIEam 247 (283)
..+++.||.|++||+||.|=+.
T Consensus 384 ~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 384 TLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred EEccCCcCEECCCCeEEEEeCC
Confidence 3889999999999999998743
No 225
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=44.10 E-value=20 Score=34.02 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=36.2
Q ss_pred CCEEeCCceEEEEEecCeeeeEecCCCeEE-EEEEcCCCCccCCCCeEEEE
Q 023356 232 GDKVQKGQVVCIIEAMKLMNEIEADQSGTI-AEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 232 Gd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV-~~Ilve~Gd~V~~G~pL~~I 281 (283)
|..|++||.++.++=+ -...+.-+.+ ++ -...+..|+.|..|+.|..+
T Consensus 237 ~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~ 285 (288)
T PRK00044 237 AITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHI 285 (288)
T ss_pred CCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCc
Confidence 7799999999999985 4444555554 43 23457899999999999765
No 226
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=43.02 E-value=38 Score=34.28 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=29.8
Q ss_pred EEecCeeeeEecCCCeEEE-------------------------------EEEcCCCCccCCCCeEEEEc
Q 023356 244 IEAMKLMNEIEADQSGTIA-------------------------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 244 IEamK~~~eI~Ap~sGvV~-------------------------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+-.-+...+|.|+.+|.|. .++++.||.|..|++|++|.
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~ 398 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIY 398 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEe
Confidence 3345566777777777776 46778899999999999874
No 227
>PRK02259 aspartoacylase; Provisional
Probab=42.64 E-value=17 Score=34.20 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=43.8
Q ss_pred CccCC---cCeEEEccCCCCCCccccCC--CEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023356 208 PLKCP---MAGTFYRCPAPGEPAFVKVG--DKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 279 (283)
Q Consensus 208 ~I~AP---~vGtf~~~p~~~~~~~V~vG--d~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~ 279 (283)
..+++ ..|.|+ +.|+.| +.|++||+|+.+ .+.-...+.++..|++ |.+++.-.++.|..++
T Consensus 216 ~pr~~~g~~~g~vh--------p~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~p--vfine~ay~~kg~a~~ 281 (288)
T PRK02259 216 YPRDENGQIAAMIH--------PQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYP--VFINEAAYYEKGIAMS 281 (288)
T ss_pred CCCCCCCCEeEEec--------hhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEe--EEecHHHHHhhhhHhh
Confidence 45666 556665 478778 569999999988 6667778889888876 4555666666666554
No 228
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=41.58 E-value=20 Score=34.37 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=19.7
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.||.|+.||+|+.++..
T Consensus 68 ~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 68 WLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEcCCCCEeCCCCEEEEEecc
Confidence 799999999999999999875
No 229
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=41.57 E-value=19 Score=36.48 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=30.9
Q ss_pred CCccCCcCeEEEccC------------------------CCCCCccccCCCEEeCCceEEEEEecC
Q 023356 207 PPLKCPMAGTFYRCP------------------------APGEPAFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p------------------------~~~~~~~V~vGd~V~~Gq~L~iIEamK 248 (283)
..|+|+..|++.... .-+...+++.||.|++||+|+.|=+++
T Consensus 336 ~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 336 IEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred EEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 357788888776422 223348899999999999999987543
No 230
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=41.43 E-value=36 Score=41.75 Aligned_cols=18 Identities=39% Similarity=0.387 Sum_probs=15.6
Q ss_pred EEcCCCCccCCCCeEEEE
Q 023356 264 ILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 264 Ilve~Gd~V~~G~pL~~I 281 (283)
+.|++|+.|..|++|++|
T Consensus 2616 l~v~~g~~v~~gdilak~ 2633 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKI 2633 (2890)
T ss_pred EEecCCCEecccceEeec
Confidence 568899999999999976
No 231
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=41.24 E-value=31 Score=33.60 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=30.4
Q ss_pred CCccCCcCeEEEccCC-C-C--------------------CCccccCCCEEeCCceEEEEEe
Q 023356 207 PPLKCPMAGTFYRCPA-P-G--------------------EPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~-~-~--------------------~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
..|+|...|++...-. . + ....|++||.|++||.|+.+-.
T Consensus 230 ~pV~Aaa~G~Vv~ag~~~~gyGn~ViI~H~~g~~S~Yahl~~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 230 QAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred CeEEeccCeEEEEEeeccCCcceEEEEEeCCceEEEeeCCCccccCCcCEECCCCeEEeEcC
Confidence 4689999998776532 1 1 2367999999999999998765
No 232
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=41.00 E-value=34 Score=39.37 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCccccCCCEEeCCceEEEEEec--------CeeeeEecCCCeEEE
Q 023356 225 EPAFVKVGDKVQKGQVVCIIEAM--------KLMNEIEADQSGTIA 262 (283)
Q Consensus 225 ~~~~V~vGd~V~~Gq~L~iIEam--------K~~~eI~Ap~sGvV~ 262 (283)
.-.+|+.||.|++||+|+++... |...+|.++.+|.|.
T Consensus 404 s~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~ 449 (1364)
T CHL00117 404 SLLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMH 449 (1364)
T ss_pred CEEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEE
Confidence 33789999999999999999863 344799999999864
No 233
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=40.67 E-value=40 Score=41.45 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.4
Q ss_pred CCCCccccCCCEEeCCceEEEE
Q 023356 223 PGEPAFVKVGDKVQKGQVVCII 244 (283)
Q Consensus 223 ~~~~~~V~vGd~V~~Gq~L~iI 244 (283)
++.-.+|+.||.|+.||+|+-|
T Consensus 2612 ~~~~l~v~~g~~v~~gdilak~ 2633 (2890)
T PRK09603 2612 PKTSIAISDGSSVEQAEVLAKI 2633 (2890)
T ss_pred CCcEEEecCCCEecccceEeec
Confidence 3444789999999999999976
No 234
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=40.66 E-value=72 Score=36.84 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCE--EeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDK--VQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~--V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..|+||..|++.-.........-.-|+. +.+...+.+|+.......+.-|... .++|++|+.|+.||.|+++.|
T Consensus 350 ~~i~a~~~G~i~~~~~~~~~~rt~~g~~~~~~~~~~~~~i~~~~~~~~~~ip~gs---~l~v~~g~~V~~~q~iae~~~ 425 (1364)
T CHL00117 350 EQVRAPFNGKIKFNEDLVHPTRTRHGHPAFLCKIDLYVTIESEDIIHNVNIPPKS---LLLVQNDQYVESEQVIAEIRA 425 (1364)
T ss_pred eeEEeccCeEEEEecceeeEEeCcCCEEEEEEecceEEEEeCCCeEEEEEeCCCC---EEEEeCcCEEcCCCEEEEECC
Confidence 4699999998875321111111111221 2222333344444444455555444 368999999999999999875
No 235
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=39.78 E-value=32 Score=33.80 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=27.2
Q ss_pred cCeeeeEecCCCeEEEEEE-------cCCCCccCCCCeEEE
Q 023356 247 MKLMNEIEADQSGTIAEIL-------AEDGKSVSVDTPLLV 280 (283)
Q Consensus 247 mK~~~eI~Ap~sGvV~~Il-------ve~Gd~V~~G~pL~~ 280 (283)
+..--.|.|..+|+|+++. |+.||.|..||+|..
T Consensus 186 ~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 186 KEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 4555789999999999975 456778999999873
No 236
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=39.74 E-value=29 Score=34.23 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=25.2
Q ss_pred eeeeEecCCCeEEEEEEc-------CCCCccCCCCeEE
Q 023356 249 LMNEIEADQSGTIAEILA-------EDGKSVSVDTPLL 279 (283)
Q Consensus 249 ~~~eI~Ap~sGvV~~Ilv-------e~Gd~V~~G~pL~ 279 (283)
.-..|.|..+|+|+++.+ +.||.|..||.|.
T Consensus 185 ~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLI 222 (382)
T TIGR02876 185 EPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLI 222 (382)
T ss_pred CCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence 345799999999999764 5667799999987
No 237
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=39.61 E-value=81 Score=27.91 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=40.0
Q ss_pred CCCCCccCCcCeEEEcc-CCCCCCccccCCCEEeCCce-EEEEEecC--ee-eeEecCCCeEEEEEEcCCCCccCCCCeE
Q 023356 204 SSHPPLKCPMAGTFYRC-PAPGEPAFVKVGDKVQKGQV-VCIIEAMK--LM-NEIEADQSGTIAEILAEDGKSVSVDTPL 278 (283)
Q Consensus 204 ~~~~~I~AP~vGtf~~~-p~~~~~~~V~vGd~V~~Gq~-L~iIEamK--~~-~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL 278 (283)
-+.+.+++|+.|++... .-+|.-+-+..-+.-.+++. ++.+|+.. +. ..|.+-..+.| ...+++|+.+..|+.+
T Consensus 70 ~DyHr~haP~~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~v~~~~~~~i-~~~~~~g~~v~kGeei 148 (189)
T TIGR00164 70 FDVHVNRAPAGGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQIAGFVARRI-VCYVKEGEKVSRGQRI 148 (189)
T ss_pred cccceEEcccccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEEECeEEccEE-EEecCCCCEEecCcEE
Confidence 35567899999988762 11221111100011123333 46777642 22 23322222333 2346789999999998
Q ss_pred EEEc
Q 023356 279 LVIV 282 (283)
Q Consensus 279 ~~Ie 282 (283)
..++
T Consensus 149 G~f~ 152 (189)
T TIGR00164 149 GMIR 152 (189)
T ss_pred EEEe
Confidence 8764
No 238
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=39.56 E-value=28 Score=27.22 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.2
Q ss_pred CCCeEEEEEEcCC-CCccCCCCeEEEEc
Q 023356 256 DQSGTIAEILAED-GKSVSVDTPLLVIV 282 (283)
Q Consensus 256 p~sGvV~~Ilve~-Gd~V~~G~pL~~Ie 282 (283)
..-|.|..+.... |+.|..|++|+.|+
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iE 53 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVE 53 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEE
Confidence 3468888877655 99999999999986
No 239
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=38.50 E-value=21 Score=36.69 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=30.8
Q ss_pred CCccCCcCeEEEccC-----------------CCCCCccccCCCEEeCCceEEEEEec
Q 023356 207 PPLKCPMAGTFYRCP-----------------APGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p-----------------~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
..|+|+..|++.... .-+...+++.||.|++||+|+.|=+.
T Consensus 414 ~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 414 ADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred EEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 357888888876432 22334889999999999999998653
No 240
>PRK04350 thymidine phosphorylase; Provisional
Probab=37.91 E-value=22 Score=36.50 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=31.4
Q ss_pred CCccCCcCeEEEccC-----------------CCCCCccccCCCEEeCCceEEEEEec
Q 023356 207 PPLKCPMAGTFYRCP-----------------APGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p-----------------~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
..|+|+..|++.... .-+...+++.||.|++||+|+.|=+.
T Consensus 406 ~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 406 HDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred EEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 467888888877432 23344889999999999999998753
No 241
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=37.88 E-value=15 Score=24.55 Aligned_cols=14 Identities=36% Similarity=0.600 Sum_probs=12.1
Q ss_pred CCcccccCCCcccc
Q 023356 1 MASIWIPCPKISWV 14 (283)
Q Consensus 1 mas~~~~~~~~~~~ 14 (283)
||++.|-||.|-..
T Consensus 1 Ma~i~v~CP~C~s~ 14 (36)
T PF03811_consen 1 MAKIDVHCPRCQST 14 (36)
T ss_pred CCcEeeeCCCCCCC
Confidence 99999999999543
No 242
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=37.39 E-value=23 Score=33.07 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=28.6
Q ss_pred cCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeee
Q 023356 213 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNE 252 (283)
Q Consensus 213 ~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~e 252 (283)
|-|-++- ..++|.+|..|++=|+.|.||.+|...+
T Consensus 173 ~~gl~wg-----asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 173 MDGLVWG-----ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred hccceec-----cccccccccceeeEEEEEEEEcCccccc
Confidence 4466653 3499999999999999999999997654
No 243
>PRK11637 AmiB activator; Provisional
Probab=37.36 E-value=53 Score=32.46 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=11.8
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
..|++||.|.+||+|+.+-.
T Consensus 381 ~~v~~G~~V~~G~~ig~~g~ 400 (428)
T PRK11637 381 ALVSVGAQVRAGQPIALVGS 400 (428)
T ss_pred CCCCCcCEECCCCeEEeecC
Confidence 34666666666666665543
No 244
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=36.09 E-value=25 Score=36.28 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=30.7
Q ss_pred CCccCCcCeEEEccC-----------------CCCCCccccCCCEEeCCceEEEEEec
Q 023356 207 PPLKCPMAGTFYRCP-----------------APGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p-----------------~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
..|+||..|++.... .-+...+++.||.|++||+|+.|=+.
T Consensus 415 ~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 415 YTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred EEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 357788888776432 23344889999999999999998753
No 245
>PRK11637 AmiB activator; Provisional
Probab=35.93 E-value=50 Score=32.60 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=42.0
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
...|+|+..|++... .|+-. -|. +.+|+-...+..+.+.. ..+.|..||.|..|++|..+
T Consensus 339 g~~v~A~~~G~V~~~-----~~~~~------~G~-~vii~hg~g~~t~Y~~~----~~~~v~~G~~V~~G~~ig~~ 398 (428)
T PRK11637 339 GTEVKAIADGRVLLA-----DWLQG------YGL-VVVVEHGKGDMSLYGYN----QSALVSVGAQVRAGQPIALV 398 (428)
T ss_pred CCeEEecCCeEEEEe-----eccCC------ccc-EEEEEeCCCcEEEccCC----CcCCCCCcCEECCCCeEEee
Confidence 346889999988752 12211 233 34677777777887653 45689999999999999876
No 246
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=33.59 E-value=1.2e+02 Score=27.18 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=42.2
Q ss_pred CCCCCccCCcCeEEEcc-CCCCCCccc-cCCCEEeCCceEEEEEecC---e-eeeEecCCCeEEEEEEcCCCCccCCCCe
Q 023356 204 SSHPPLKCPMAGTFYRC-PAPGEPAFV-KVGDKVQKGQVVCIIEAMK---L-MNEIEADQSGTIAEILAEDGKSVSVDTP 277 (283)
Q Consensus 204 ~~~~~I~AP~vGtf~~~-p~~~~~~~V-~vGd~V~~Gq~L~iIEamK---~-~~eI~Ap~sGvV~~Ilve~Gd~V~~G~p 277 (283)
.+.+.++||+.|++... +-++.-+-+ .......--..+..+|+.+ + +..|-+-..+.|. ..+++|+.+..|+.
T Consensus 89 ~d~H~~~aP~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~v~kGe~ 167 (206)
T PRK05305 89 FNVHVNRAPVSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDEVERGER 167 (206)
T ss_pred ccCCEEEeCccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCEEccCcE
Confidence 35567899999987752 122221111 1111112233455777642 2 2333333444443 25678999999999
Q ss_pred EEEEc
Q 023356 278 LLVIV 282 (283)
Q Consensus 278 L~~Ie 282 (283)
+..++
T Consensus 168 ~G~f~ 172 (206)
T PRK05305 168 FGLIR 172 (206)
T ss_pred EeEEe
Confidence 88764
No 247
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=32.35 E-value=1e+02 Score=32.35 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=34.3
Q ss_pred ccccCCCEEeCCceEEEEEecCeeeeE--ecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLMNEI--EADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~~eI--~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
+.|++||.|..||+|+.+.-..+++-| .-+..|.+..+.+.+|+. ..++.++++
T Consensus 120 P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y-tv~d~ia~v 175 (588)
T COG1155 120 PAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY-TVEDVIATV 175 (588)
T ss_pred cccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc-eeeEEEEEE
Confidence 567999999999999987544422333 233345555666666753 335556555
No 248
>PRK06149 hypothetical protein; Provisional
Probab=31.63 E-value=33 Score=37.74 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=30.1
Q ss_pred CCCCccCCcCeEEEccCCC-----C---------CCccccCCCEEeCCceEEEEEe
Q 023356 205 SHPPLKCPMAGTFYRCPAP-----G---------EPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~-----~---------~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
....|.||+.|++...-.- + ....+++||.|++||.||.+-.
T Consensus 441 ~gt~v~Ap~~G~v~~~~~~~~~l~~~~~f~~l~g~~~~~~~g~~v~~G~~~~~~g~ 496 (972)
T PRK06149 441 AGTAVAAPFAGTVVRDGQGHLTLRGDALELHLDGVEPAVEDGAAVRAGDPLGSVAG 496 (972)
T ss_pred CCCeEECccCcEEEEecCCceEecCCCcEEEEecccccCCCCCeecCCchheecCC
Confidence 3457999999998864220 0 0122889999999999998875
No 249
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.43 E-value=90 Score=27.27 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.3
Q ss_pred CCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 256 DQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 256 p~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
|+.|-++-..+.-|+.|..|++++.+
T Consensus 97 PvEGYvVtpIaDvG~RvrkGd~~AAv 122 (161)
T COG4072 97 PVEGYVVTPIADVGNRVRKGDPFAAV 122 (161)
T ss_pred ecCcEEEEEeecccchhcCCCceeEE
Confidence 67799999999999999999999876
No 250
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=31.21 E-value=23 Score=37.93 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=27.2
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCee
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLM 250 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~ 250 (283)
..|-|-|+|.+.. .+++||.|++||.|+...=+.-.
T Consensus 886 VaiGAmMVGSi~l--------t~kEgd~V~~gdELGYFkFGGST 921 (975)
T KOG2419|consen 886 VAIGAMMVGSILL--------TRKEGDHVKKGDELGYFKFGGST 921 (975)
T ss_pred EeecceeeeeEEE--------EeecCcccccccccceEeeCCee
Confidence 3577788887764 68999999999988776554433
No 251
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=30.27 E-value=1.1e+02 Score=27.73 Aligned_cols=44 Identities=30% Similarity=0.378 Sum_probs=36.8
Q ss_pred cccCCCEEeCCceEEEEEecC---eeeeEecCCCeEEEEEEcCCCCcc
Q 023356 228 FVKVGDKVQKGQVVCIIEAMK---LMNEIEADQSGTIAEILAEDGKSV 272 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK---~~~eI~Ap~sGvV~~Ilve~Gd~V 272 (283)
++..|..-+.|+++-+.|+|| +.++|.-+ .|+|.+|.|.+++..
T Consensus 69 ~lrsGm~t~~G~iv~~~qa~~~d~v~lvi~G~-~G~V~rI~V~d~~i~ 115 (191)
T PRK10718 69 RLRSGMKTANGNVVRFFQAMKGDQVAMVINGQ-QGTVSRIDVLDSDIP 115 (191)
T ss_pred eEeccccCCCCCEEEeeeeecCCceEEEEECC-CCcEEEEEEeCCCCC
Confidence 367888899999999888875 66677777 999999999999874
No 252
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=30.13 E-value=38 Score=30.34 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=17.8
Q ss_pred CccccCCCEEeCCceEEEEE
Q 023356 226 PAFVKVGDKVQKGQVVCIIE 245 (283)
Q Consensus 226 ~~~V~vGd~V~~Gq~L~iIE 245 (283)
...|++||.|++||+|+.+-
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G 234 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVG 234 (277)
T ss_pred hhccCCCCEeccCCEEEEec
Confidence 47789999999999999884
No 253
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=29.74 E-value=63 Score=36.90 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=19.8
Q ss_pred CCCCCccccCCCEEeCCceEEEE
Q 023356 222 APGEPAFVKVGDKVQKGQVVCII 244 (283)
Q Consensus 222 ~~~~~~~V~vGd~V~~Gq~L~iI 244 (283)
++++-.++..||.|++||+|+.+
T Consensus 945 s~ga~~~~~~g~~v~~Gd~L~~l 967 (1227)
T TIGR02388 945 SPGAVLHIEDGDLVQRGDNLALL 967 (1227)
T ss_pred CCCCEEEecCCCEecCCCEEEEE
Confidence 36677889999999999999976
No 254
>PF06572 DUF1131: Protein of unknown function (DUF1131); InterPro: IPR010938 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2QZB_B.
Probab=28.70 E-value=77 Score=28.33 Aligned_cols=44 Identities=27% Similarity=0.415 Sum_probs=31.8
Q ss_pred ccCCCEEeCCceEEEEEecC---eeeeEecCCCeEEEEEEcCCCCcc
Q 023356 229 VKVGDKVQKGQVVCIIEAMK---LMNEIEADQSGTIAEILAEDGKSV 272 (283)
Q Consensus 229 V~vGd~V~~Gq~L~iIEamK---~~~eI~Ap~sGvV~~Ilve~Gd~V 272 (283)
++.|-+-..|+++-++|+|| +.++|.-+-.|+|.+|.|.+.+..
T Consensus 49 lrsGm~t~nG~~v~~~qA~~~d~v~lvI~G~~~G~V~rI~V~d~~i~ 95 (171)
T PF06572_consen 49 LRSGMQTANGNIVSFFQAMKDDQVKLVISGDPKGTVSRIEVMDPDIK 95 (171)
T ss_dssp EEEEEEEETTEEEEEEEEEETTEEEEEEEE----BEEEEEE--TTS-
T ss_pred EecceecCCCCeEEeeeeecCCeEEEEEecCCCCcEEEEEEeccccC
Confidence 46788899999999999975 677888888999999999988764
No 255
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=26.74 E-value=50 Score=30.96 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.5
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|+.|++|+.|+..
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 62 WLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred EEeCCCCEecCCCEEEEEEEC
Confidence 899999999999999999874
No 256
>PRK13380 glycine cleavage system protein H; Provisional
Probab=25.72 E-value=63 Score=27.71 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=27.5
Q ss_pred eeeEecCCCeEEEEEEcC-CCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAE-DGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve-~Gd~V~~G~pL~~Ie 282 (283)
+.+.....-|.|..+.+. .|+.|..|++|+.|+
T Consensus 35 itd~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IE 68 (144)
T PRK13380 35 ITDYAQTMAGDVVFVRLKELGKKVEKGKPVATLE 68 (144)
T ss_pred cCHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEE
Confidence 445666777889999886 799999999999986
No 257
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.63 E-value=54 Score=31.07 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.5
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|++|++|+.++..
T Consensus 68 ~~~~dG~~v~~g~~i~~~~G~ 88 (277)
T PRK08072 68 LHKKDGDLVKKGEIIATVQGP 88 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEEC
Confidence 899999999999999999864
No 258
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=25.54 E-value=26 Score=29.53 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=19.7
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceE
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVV 241 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L 241 (283)
.|....--.+...-+++.+..|++||.|+.||.|
T Consensus 27 tI~~~dG~~v~~~IP~GpeLiV~eG~~V~~dqpL 60 (118)
T PF01333_consen 27 TIETSDGETVVETIPAGPELIVSEGQSVKADQPL 60 (118)
T ss_dssp EEETTTSEEEEEEEESSS-BS--TT-EETTT-BS
T ss_pred EEECCCCCEEEEecCCCCeEEEcCCCEEecCCcc
Confidence 3433332245555667888999999999999986
No 259
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=24.89 E-value=59 Score=32.08 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=35.3
Q ss_pred CCCEEeCCceEEEEEecCeeee-EecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 231 VGDKVQKGQVVCIIEAMKLMNE-IEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 231 vGd~V~~Gq~L~iIEamK~~~e-I~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+..|++||.++.-+-+-...- .+++. .+ +..++.|+.|.+||.|..+.
T Consensus 290 ~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~ 339 (353)
T PTZ00403 290 SYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVG 339 (353)
T ss_pred CCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccC
Confidence 3568999999999887554332 23332 23 56688999999999998764
No 260
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=24.56 E-value=1.7e+02 Score=20.70 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCCcEEEEEeCC--EEEEEEe
Q 023356 117 VSDLVKLVDSRDIMELQMKQSD--CELIVRK 145 (283)
Q Consensus 117 I~eLikl~d~s~i~ELeLk~~d--~~L~Irk 145 (283)
.++|.+++++.+..-+.++..+ ++|.|+|
T Consensus 39 ~~~i~~~~~~~g~~~~~~~~~~~~~~i~i~k 69 (69)
T cd00291 39 VEDIPAWAKETGHEVLEVEEEGGVYRILIRK 69 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEeCCEEEEEEEC
Confidence 5667778888887766666544 7777764
No 261
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=23.51 E-value=2e+02 Score=25.41 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=46.4
Q ss_pred CCCCCccCCcCeEEEccC-CCCCCccccCCCE------E-eCCceEEEEEecC---eeeeEecCCCeEEEEEEc-CCCCc
Q 023356 204 SSHPPLKCPMAGTFYRCP-APGEPAFVKVGDK------V-QKGQVVCIIEAMK---LMNEIEADQSGTIAEILA-EDGKS 271 (283)
Q Consensus 204 ~~~~~I~AP~vGtf~~~p-~~~~~~~V~vGd~------V-~~Gq~L~iIEamK---~~~eI~Ap~sGvV~~Ilv-e~Gd~ 271 (283)
.+.+..++|..|++.... -++.-+-|..... . .--..++.|++.. ++.+|-+-.-|.|.-... +.|+.
T Consensus 79 ~DyHr~haPv~G~v~~~~~i~G~~~~v~~~~~~~~~~~~~~NeR~~~~i~~~~G~v~~v~Vga~~v~~I~~~~~~~~g~~ 158 (202)
T PF02666_consen 79 FDYHRNHAPVDGRVEEVRYIPGKLLPVNPPALSHIPGLFAENERVVLVIETKFGKVAVVQVGALLVGSIVLTVDPKEGDE 158 (202)
T ss_pred CcceEEEecCCEEEEEEEEECccccccChHHhhccCCeeEEeeEEEEEEEECCCEEEEEEeccceeceeEEEecccCCCE
Confidence 356789999999987631 1222222211111 1 2234455666532 445777777787743332 58999
Q ss_pred cCCCCeEEEEc
Q 023356 272 VSVDTPLLVIV 282 (283)
Q Consensus 272 V~~G~pL~~Ie 282 (283)
|..|+.|..++
T Consensus 159 v~kG~e~G~f~ 169 (202)
T PF02666_consen 159 VKKGEELGYFR 169 (202)
T ss_pred EecCcEeCEEe
Confidence 99999987764
No 262
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=23.50 E-value=1.5e+02 Score=36.91 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=44.1
Q ss_pred ccccCCCEEeCCceEEEEEe-----------cCe------------eeeEecCCCeEEE---------------------
Q 023356 227 AFVKVGDKVQKGQVVCIIEA-----------MKL------------MNEIEADQSGTIA--------------------- 262 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa-----------mK~------------~~eI~Ap~sGvV~--------------------- 262 (283)
|...-|..|+-|+.|++|-| |.. ...|+|+.+|+|.
T Consensus 2322 ~~La~~~~V~iGeaVGiIAAQSIGEPGTQLTMRTFHtGGvas~~~~~~~i~~~~~G~v~~~~~~~v~~~~g~~iv~sr~~ 2401 (2836)
T PRK14844 2322 RDLATGKIVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINAKIKLNNSNIIIDKNGNKIVISRSC 2401 (2836)
T ss_pred ccccCCCcccccccceeeeecccCCCcceeeeeheeeccccccccccceeEeccCceEEeccceeEEcCCCcEEEEeccc
Confidence 56678888889999998876 222 2357888888764
Q ss_pred ---------------------EEEcCCCCccCCCCeEEEEcC
Q 023356 263 ---------------------EILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 263 ---------------------~Ilve~Gd~V~~G~pL~~Iep 283 (283)
.++|++|+.|+.|+.|++..|
T Consensus 2402 ~~~i~d~~g~~~~~~~i~yga~l~v~~g~~V~~g~~la~wdp 2443 (2836)
T PRK14844 2402 EVVLIDSLGSEKLKHSVPYGAKLYVDEGGSVKIGDKVAEWDP 2443 (2836)
T ss_pred EEEEEecCCcEEEEEecccccEEEecCCCEecCCCEEEEEcC
Confidence 357899999999999998765
No 263
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=23.21 E-value=1.3e+02 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=18.6
Q ss_pred eEEEEEEcCCCCccCCCCeEEEE
Q 023356 259 GTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 259 GvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
|.-.+.+|+.||.|..||.|++.
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~ 61 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEA 61 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEec
Confidence 44457888999999999999864
No 264
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=22.89 E-value=63 Score=30.83 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=19.3
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|++|++|+.++..
T Consensus 65 ~~~~dG~~v~~G~~i~~~~G~ 85 (284)
T PRK06096 65 DAVSDGSQANAGQRLISAQGN 85 (284)
T ss_pred EEeCCCCEeCCCCEEEEEEeC
Confidence 899999999999999999863
No 265
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.84 E-value=64 Score=30.79 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.4
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|++|++|+.++..
T Consensus 69 ~~~~dG~~v~~G~~i~~~~G~ 89 (281)
T PRK06543 69 LAVADGERFEAGDILATVTGP 89 (281)
T ss_pred EEeCCCCEecCCCEEEEEEec
Confidence 899999999999999999863
No 266
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.75 E-value=66 Score=30.53 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=19.5
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|++|++|+.++..
T Consensus 70 ~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 70 WQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEEc
Confidence 899999999999999999874
No 267
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.40 E-value=91 Score=29.24 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 258 SGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 258 sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+|.-.++++++|+.|..|++|++|+
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEE
Confidence 5666789999999999999999985
No 268
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=21.04 E-value=1.3e+02 Score=21.60 Aligned_cols=28 Identities=11% Similarity=0.376 Sum_probs=17.6
Q ss_pred HHHHHHHhhCCCcEEEE--EeCCEEEEEEe
Q 023356 118 SDLVKLVDSRDIMELQM--KQSDCELIVRK 145 (283)
Q Consensus 118 ~eLikl~d~s~i~ELeL--k~~d~~L~Irk 145 (283)
++|.+++++.+..-+++ ..+.++|.|+|
T Consensus 41 ~di~~~~~~~g~~~~~~~~~~~~~~i~I~K 70 (70)
T PF01206_consen 41 EDIPRWCEENGYEVVEVEEEGGEYRILIRK 70 (70)
T ss_dssp HHHHHHHHHHTEEEEEEEESSSSEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCEEEEEEEC
Confidence 44555666666544444 66678888876
No 269
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.85 E-value=76 Score=30.33 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.3
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|++||+|+.++..
T Consensus 76 ~~~~dG~~v~~g~~i~~~~G~ 96 (288)
T PRK07428 76 PLVAEGAACESGQVVAEIEGP 96 (288)
T ss_pred EEcCCCCEecCCCEEEEEEEc
Confidence 789999999999999999863
No 270
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=20.65 E-value=77 Score=29.62 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.5
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|+.|++|+.|+..
T Consensus 61 ~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 61 WLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred EEeCCCCEecCCCEEEEEEEc
Confidence 799999999999999999874
No 271
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=20.60 E-value=87 Score=31.83 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=18.2
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
.+++.||.|++|++|+.|=+
T Consensus 381 l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 381 LHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred EEecCCCeeccCCeEEEEec
Confidence 46899999999999999977
No 272
>PF06062 UPF0231: Uncharacterised protein family (UPF0231); InterPro: IPR008249 The proteins in this entry are functionally uncharacterised.
Probab=20.25 E-value=2.1e+02 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEecc
Q 023356 111 SAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKE 147 (283)
Q Consensus 111 ~~~i~eI~eLikl~d~s~i~ELeLk~~d~~L~Irk~~ 147 (283)
...|++|...|+.++.+...+..+...+++|.|.+.+
T Consensus 37 ~~~i~~vl~~i~~~~~~~~~e~~l~G~E~sL~l~~dE 73 (121)
T PF06062_consen 37 LEKIDQVLAAIEQLKNSQRQEWQLEGKEYSLSLDQDE 73 (121)
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEeCceEEEEEccce
Confidence 3456788888889999999999999999999998765
No 273
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=20.24 E-value=1.3e+02 Score=27.99 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=45.0
Q ss_pred CCCCCccCCcCeEEEcc-CCCCCCccccCCC-EEeCCceEEEEEecCe---eeeEecCCCeEEEEEEcCCCCccCCCCeE
Q 023356 204 SSHPPLKCPMAGTFYRC-PAPGEPAFVKVGD-KVQKGQVVCIIEAMKL---MNEIEADQSGTIAEILAEDGKSVSVDTPL 278 (283)
Q Consensus 204 ~~~~~I~AP~vGtf~~~-p~~~~~~~V~vGd-~V~~Gq~L~iIEamK~---~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL 278 (283)
-+.+..++|..|++... +-+|.=.-|..=. ..+-...+++|++..- +..|-+-..|.|+ ...+.|+.|.+|+.+
T Consensus 122 ~DyHr~haP~~G~i~~~~~~~G~~~~v~~~~~~~~NER~~~~i~t~~g~v~~v~Vga~~v~~Iv-~~~~~~~~v~~G~~~ 200 (239)
T COG0688 122 FDYHRNHAPVDGTIIEVRYVPGKFFSANLDKAFTENERNSVLIETEQGKVVVVQVAGLVARRIV-CYVKEGDTVKKGERI 200 (239)
T ss_pred ceeeeEeCCCCCEEEEEEEECCceeccChhhhhcccceEEEEEEcCCCcEEEEEEhhheeeEEE-EEecCCcEEEhhhhh
Confidence 35678899999987752 1112111111111 1222345678888653 4567777777774 344558999998876
Q ss_pred EEE
Q 023356 279 LVI 281 (283)
Q Consensus 279 ~~I 281 (283)
..+
T Consensus 201 G~~ 203 (239)
T COG0688 201 GGI 203 (239)
T ss_pred hhh
Confidence 543
No 274
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.09 E-value=80 Score=29.91 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.4
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|++||+|+.++..
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G~ 82 (273)
T PRK05848 62 FTIKDGERFKKGDILMEIEGD 82 (273)
T ss_pred EEcCCCCEecCCCEEEEEEEC
Confidence 799999999999999999863
No 275
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.05 E-value=80 Score=30.43 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.3
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|++|++|+.++..
T Consensus 86 ~~~~dG~~v~~G~~i~~~~G~ 106 (294)
T PRK06978 86 WRYREGDRMTADSTVCELEGP 106 (294)
T ss_pred EEcCCCCEeCCCCEEEEEEeC
Confidence 899999999999999999863
Done!