Query 023356
Match_columns 283
No_of_seqs 238 out of 2006
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bdo_A Acetyl-COA carboxylase; 99.7 2.3E-16 8E-21 118.5 10.1 76 207-282 5-80 (80)
2 2kcc_A Acetyl-COA carboxylase 99.6 3.7E-15 1.3E-19 114.0 7.2 69 207-283 6-74 (84)
3 1z6h_A Biotin/lipoyl attachmen 99.6 1E-14 3.5E-19 106.8 8.9 69 208-283 1-69 (72)
4 3crk_C Dihydrolipoyllysine-res 99.5 2.1E-14 7.1E-19 110.2 8.2 65 212-283 17-82 (87)
5 1ghj_A E2, E2, the dihydrolipo 99.5 3.2E-14 1.1E-18 106.7 8.9 66 211-283 12-77 (79)
6 2dn8_A Acetyl-COA carboxylase 99.5 3.7E-14 1.3E-18 111.6 9.2 69 207-283 18-86 (100)
7 2d5d_A Methylmalonyl-COA decar 99.5 6.6E-14 2.3E-18 102.6 9.0 69 207-282 6-74 (74)
8 1dcz_A Transcarboxylase 1.3S s 99.5 7.3E-14 2.5E-18 103.6 9.2 71 205-282 7-77 (77)
9 1k8m_A E2 component of branche 99.5 4.5E-14 1.5E-18 110.2 7.6 64 213-283 17-80 (93)
10 3n6r_A Propionyl-COA carboxyla 99.5 4.6E-14 1.6E-18 143.9 9.8 71 205-282 611-681 (681)
11 2dnc_A Pyruvate dehydrogenase 99.5 4.5E-14 1.5E-18 111.4 7.4 64 213-283 20-84 (98)
12 2dne_A Dihydrolipoyllysine-res 99.5 7.5E-14 2.6E-18 112.2 7.8 63 213-282 20-83 (108)
13 2l5t_A Lipoamide acyltransfera 99.5 7.7E-14 2.6E-18 104.0 7.2 65 211-282 12-76 (77)
14 3va7_A KLLA0E08119P; carboxyla 99.5 1.1E-13 3.7E-18 149.4 10.7 71 204-281 1165-1235(1236)
15 2k7v_A Dihydrolipoyllysine-res 99.4 1.6E-14 5.3E-19 110.3 2.1 69 208-283 4-72 (85)
16 1y8o_B Dihydrolipoyllysine-res 99.4 1.9E-13 6.4E-18 113.5 8.1 64 213-283 40-104 (128)
17 2ejm_A Methylcrotonoyl-COA car 99.4 2.6E-13 8.9E-18 106.7 8.5 71 206-283 14-84 (99)
18 1qjo_A Dihydrolipoamide acetyl 99.4 2.5E-13 8.5E-18 101.7 7.5 63 214-283 14-76 (80)
19 2jku_A Propionyl-COA carboxyla 99.4 3.4E-14 1.2E-18 110.9 2.7 70 206-282 25-94 (94)
20 3hbl_A Pyruvate carboxylase; T 99.4 4E-13 1.4E-17 144.1 10.2 72 205-283 1076-1147(1150)
21 1gjx_A Pyruvate dehydrogenase; 99.4 7.1E-14 2.4E-18 105.1 3.2 68 209-283 10-77 (81)
22 3u9t_A MCC alpha, methylcroton 99.4 4E-14 1.4E-18 144.2 0.2 71 206-283 602-672 (675)
23 1pmr_A Dihydrolipoyl succinylt 99.4 2.7E-14 9.2E-19 107.7 -1.0 64 213-283 15-78 (80)
24 1iyu_A E2P, dihydrolipoamide a 99.4 7E-13 2.4E-17 99.3 6.7 57 227-283 18-74 (79)
25 1zko_A Glycine cleavage system 99.3 9.9E-13 3.4E-17 110.3 2.1 54 230-283 54-114 (136)
26 3bg3_A Pyruvate carboxylase, m 99.2 4.1E-12 1.4E-16 130.7 3.1 70 206-282 649-718 (718)
27 2qf7_A Pyruvate carboxylase pr 99.2 1.1E-11 3.6E-16 133.3 5.2 71 206-283 1095-1165(1165)
28 3dva_I Dihydrolipoyllysine-res 99.1 3.6E-12 1.2E-16 124.0 0.0 62 214-282 16-77 (428)
29 1zy8_K Pyruvate dehydrogenase 99.1 6.4E-12 2.2E-16 113.3 0.0 62 214-282 17-79 (229)
30 2k32_A A; NMR {Campylobacter j 99.0 3.5E-10 1.2E-14 90.0 5.6 69 208-283 3-101 (116)
31 1hpc_A H protein of the glycin 98.8 3.1E-09 1.1E-13 88.4 4.4 69 209-283 30-105 (131)
32 1onl_A Glycine cleavage system 98.8 4.4E-09 1.5E-13 87.1 4.6 54 230-283 45-105 (128)
33 3a7l_A H-protein, glycine clea 98.8 4.8E-09 1.6E-13 86.9 4.8 55 229-283 45-106 (128)
34 3lnn_A Membrane fusion protein 98.3 1.5E-06 5.1E-11 80.3 7.4 70 206-282 57-203 (359)
35 3ne5_B Cation efflux system pr 98.2 3.1E-06 1.1E-10 80.9 7.6 69 207-282 122-239 (413)
36 2f1m_A Acriflavine resistance 98.1 7.2E-07 2.4E-11 79.7 2.4 69 207-282 23-164 (277)
37 3fpp_A Macrolide-specific effl 98.1 2.6E-06 8.7E-11 78.2 6.1 71 205-282 30-188 (341)
38 3klr_A Glycine cleavage system 98.1 2.3E-06 7.9E-11 70.7 5.2 53 230-282 41-100 (125)
39 1vf7_A Multidrug resistance pr 98.0 3.8E-06 1.3E-10 78.7 3.7 70 206-282 43-171 (369)
40 3na6_A Succinylglutamate desuc 97.9 5E-05 1.7E-09 71.1 9.5 67 206-282 257-327 (331)
41 3mxu_A Glycine cleavage system 97.9 1.5E-05 5.3E-10 67.2 5.3 41 230-270 63-103 (143)
42 3tzu_A GCVH, glycine cleavage 97.8 1.2E-05 4.1E-10 67.4 4.6 53 230-282 58-117 (137)
43 3cdx_A Succinylglutamatedesucc 97.7 8.6E-05 2.9E-09 69.9 8.5 67 206-282 267-337 (354)
44 3fmc_A Putative succinylglutam 97.6 9.4E-05 3.2E-09 70.4 7.6 67 206-282 290-362 (368)
45 4dk0_A Putative MACA; alpha-ha 97.6 4.8E-06 1.6E-10 77.1 -1.4 70 205-281 31-188 (369)
46 2dn8_A Acetyl-COA carboxylase 97.5 3.5E-05 1.2E-09 60.0 2.3 45 238-282 5-49 (100)
47 3hgb_A Glycine cleavage system 97.5 0.00011 3.8E-09 62.7 5.3 37 230-266 68-104 (155)
48 1ax3_A Iiaglc, glucose permeas 97.4 0.0002 6.9E-09 61.4 6.0 65 207-282 13-116 (162)
49 1f3z_A EIIA-GLC, glucose-speci 97.4 0.00022 7.6E-09 61.1 5.6 65 207-282 13-116 (161)
50 2gpr_A Glucose-permease IIA co 97.3 0.00025 8.6E-09 60.3 5.6 64 208-282 9-111 (154)
51 2qj8_A MLR6093 protein; struct 96.9 0.0026 8.9E-08 59.0 8.4 66 207-282 258-327 (332)
52 1z6h_A Biotin/lipoyl attachmen 96.8 0.0011 3.6E-08 47.6 4.0 31 252-282 1-31 (72)
53 2d5d_A Methylmalonyl-COA decar 96.7 0.0018 6E-08 46.4 4.3 32 251-282 6-37 (74)
54 1dcz_A Transcarboxylase 1.3S s 96.6 0.0021 7.2E-08 46.7 4.2 33 250-282 8-40 (77)
55 2kcc_A Acetyl-COA carboxylase 96.4 0.0017 5.8E-08 48.8 2.8 32 251-282 6-37 (84)
56 2ejm_A Methylcrotonoyl-COA car 95.8 0.0056 1.9E-07 47.3 3.3 33 250-282 14-46 (99)
57 3lnn_A Membrane fusion protein 95.8 0.0059 2E-07 56.1 4.0 55 229-283 35-90 (359)
58 2xha_A NUSG, transcription ant 95.8 0.009 3.1E-07 52.6 4.9 51 223-279 19-98 (193)
59 2jku_A Propionyl-COA carboxyla 95.8 0.0053 1.8E-07 47.1 3.0 33 250-282 25-57 (94)
60 3fpp_A Macrolide-specific effl 95.8 0.0094 3.2E-07 54.3 5.2 44 239-283 21-64 (341)
61 2l5t_A Lipoamide acyltransfera 95.6 0.011 3.9E-07 42.9 4.2 33 207-246 45-77 (77)
62 1bdo_A Acetyl-COA carboxylase; 95.4 0.0079 2.7E-07 44.1 2.7 32 251-282 5-43 (80)
63 1vf7_A Multidrug resistance pr 95.1 0.013 4.6E-07 54.5 3.8 43 240-283 34-76 (369)
64 1qjo_A Dihydrolipoamide acetyl 95.1 0.013 4.6E-07 42.8 3.0 34 206-246 43-76 (80)
65 2xhc_A Transcription antitermi 94.9 0.024 8.2E-07 53.9 4.9 50 224-279 60-138 (352)
66 3our_B EIIA, phosphotransferas 94.8 0.041 1.4E-06 48.0 5.8 65 207-282 35-138 (183)
67 1iyu_A E2P, dihydrolipoamide a 94.8 0.026 8.7E-07 41.3 3.8 34 207-247 42-75 (79)
68 3crk_C Dihydrolipoyllysine-res 94.7 0.036 1.2E-06 41.5 4.6 26 257-282 18-43 (87)
69 4dk0_A Putative MACA; alpha-ha 94.7 0.013 4.6E-07 53.8 2.5 54 229-283 12-65 (369)
70 1k8m_A E2 component of branche 94.6 0.033 1.1E-06 42.6 4.2 26 257-282 17-42 (93)
71 1ghj_A E2, E2, the dihydrolipo 94.6 0.025 8.6E-07 41.4 3.4 34 206-246 44-77 (79)
72 2dne_A Dihydrolipoyllysine-res 94.4 0.029 1E-06 44.3 3.7 34 249-282 6-45 (108)
73 1gjx_A Pyruvate dehydrogenase; 94.3 0.031 1.1E-06 41.0 3.3 30 253-282 10-39 (81)
74 3ne5_B Cation efflux system pr 94.2 0.045 1.5E-06 52.0 5.1 54 229-282 99-154 (413)
75 2dnc_A Pyruvate dehydrogenase 93.8 0.044 1.5E-06 42.4 3.5 26 257-282 20-45 (98)
76 2k7v_A Dihydrolipoyllysine-res 93.8 0.021 7.3E-07 42.6 1.5 35 206-247 39-73 (85)
77 1pmr_A Dihydrolipoyl succinylt 93.6 0.025 8.6E-07 41.6 1.6 34 206-246 45-78 (80)
78 2gpr_A Glucose-permease IIA co 93.5 0.036 1.2E-06 46.9 2.7 73 207-282 45-154 (154)
79 1y8o_B Dihydrolipoyllysine-res 93.3 0.079 2.7E-06 43.4 4.3 26 257-282 40-65 (128)
80 3d4r_A Domain of unknown funct 93.2 0.1 3.5E-06 44.9 5.1 41 227-267 114-155 (169)
81 2auk_A DNA-directed RNA polyme 93.1 0.11 3.7E-06 45.2 5.1 47 223-271 60-106 (190)
82 2xha_A NUSG, transcription ant 92.9 0.041 1.4E-06 48.4 2.1 50 224-279 78-157 (193)
83 1ax3_A Iiaglc, glucose permeas 92.1 0.082 2.8E-06 45.1 3.0 77 206-282 49-161 (162)
84 3n6r_A Propionyl-COA carboxyla 91.6 0.13 4.4E-06 52.4 4.3 33 250-282 612-644 (681)
85 1f3z_A EIIA-GLC, glucose-speci 90.9 0.23 7.8E-06 42.3 4.5 40 207-246 50-117 (161)
86 2bco_A Succinylglutamate desuc 90.6 0.28 9.7E-06 45.9 5.3 62 208-281 265-326 (350)
87 2k32_A A; NMR {Campylobacter j 90.6 0.15 5.3E-06 39.6 2.9 35 206-247 67-102 (116)
88 3our_B EIIA, phosphotransferas 89.0 0.41 1.4E-05 41.7 4.6 20 227-246 120-139 (183)
89 3bg3_A Pyruvate carboxylase, m 88.5 0.27 9.1E-06 50.8 3.6 32 251-282 650-681 (718)
90 3lu0_D DNA-directed RNA polyme 88.0 0.39 1.3E-05 52.7 4.7 37 224-262 1000-1036(1407)
91 3hbl_A Pyruvate carboxylase; T 87.8 0.36 1.2E-05 52.1 4.3 32 251-282 1078-1109(1150)
92 3va7_A KLLA0E08119P; carboxyla 87.4 0.4 1.4E-05 52.3 4.3 32 251-282 1168-1199(1236)
93 3u9t_A MCC alpha, methylcroton 86.7 0.13 4.4E-06 52.3 0.0 32 251-282 603-634 (675)
94 2xhc_A Transcription antitermi 86.0 0.17 5.9E-06 48.0 0.5 50 224-279 118-197 (352)
95 2qf7_A Pyruvate carboxylase pr 84.8 0.62 2.1E-05 50.4 4.1 31 252-282 1097-1127(1165)
96 2f1m_A Acriflavine resistance 83.9 0.99 3.4E-05 39.6 4.4 34 206-246 130-165 (277)
97 3dva_I Dihydrolipoyllysine-res 78.1 0.44 1.5E-05 46.1 0.0 35 207-248 46-80 (428)
98 1zy8_K Pyruvate dehydrogenase 75.7 0.56 1.9E-05 41.8 0.0 33 207-246 47-80 (229)
99 3fmc_A Putative succinylglutam 72.4 3.1 0.00011 39.2 4.2 33 249-282 289-321 (368)
100 3na6_A Succinylglutamate desuc 66.4 4.5 0.00015 37.4 3.9 34 248-282 255-288 (331)
101 3cdx_A Succinylglutamatedesucc 63.3 7.4 0.00025 36.1 4.7 35 247-282 264-298 (354)
102 1uou_A Thymidine phosphorylase 60.3 9.1 0.00031 37.6 5.0 39 244-282 366-433 (474)
103 3lu0_D DNA-directed RNA polyme 57.5 4.4 0.00015 44.7 2.3 22 223-244 1103-1124(1407)
104 1brw_A PYNP, protein (pyrimidi 54.4 13 0.00043 36.1 4.8 38 245-282 330-398 (433)
105 3h5q_A PYNP, pyrimidine-nucleo 54.3 13 0.00044 36.1 4.9 36 247-282 335-401 (436)
106 3it5_A Protease LASA; metallop 53.9 14 0.00048 31.4 4.5 13 207-219 49-61 (182)
107 3it5_A Protease LASA; metallop 52.7 7.8 0.00027 33.1 2.7 21 226-246 84-104 (182)
108 2dsj_A Pyrimidine-nucleoside ( 52.2 13 0.00043 36.1 4.4 37 245-282 323-390 (423)
109 1yw4_A Succinylglutamate desuc 49.8 2.7 9.4E-05 39.0 -0.7 36 227-262 277-317 (341)
110 3vr4_A V-type sodium ATPase ca 49.7 24 0.00082 35.7 6.1 41 228-270 130-173 (600)
111 2auk_A DNA-directed RNA polyme 49.3 29 0.001 29.6 5.9 69 208-283 10-83 (190)
112 1hpc_A H protein of the glycin 47.3 3.6 0.00012 33.5 -0.2 32 251-282 28-60 (131)
113 1zko_A Glycine cleavage system 46.9 4 0.00014 33.6 -0.1 32 251-282 37-69 (136)
114 2tpt_A Thymidine phosphorylase 46.6 11 0.00038 36.6 3.0 39 244-282 334-403 (440)
115 3d4r_A Domain of unknown funct 45.9 15 0.00051 31.5 3.3 40 232-282 93-132 (169)
116 2qj8_A MLR6093 protein; struct 43.1 19 0.00067 32.8 4.0 32 250-282 257-288 (332)
117 1onl_A Glycine cleavage system 42.8 5.1 0.00017 32.5 -0.0 32 251-282 28-60 (128)
118 2tpt_A Thymidine phosphorylase 41.3 13 0.00044 36.1 2.6 22 227-248 385-406 (440)
119 3tuf_B Stage II sporulation pr 41.0 32 0.0011 30.7 5.0 19 263-281 134-152 (245)
120 3csq_A Morphogenesis protein 1 40.7 12 0.00041 34.6 2.1 21 226-246 250-270 (334)
121 3tuf_B Stage II sporulation pr 39.6 12 0.0004 33.6 1.9 21 227-247 135-155 (245)
122 3nyy_A Putative glycyl-glycine 38.4 13 0.00046 33.2 2.0 19 228-246 183-201 (252)
123 3h5q_A PYNP, pyrimidine-nucleo 36.7 24 0.00083 34.2 3.7 19 227-245 383-401 (436)
124 1qwy_A Peptidoglycan hydrolase 35.8 15 0.0005 34.0 1.9 20 227-246 239-258 (291)
125 1brw_A PYNP, protein (pyrimidi 35.7 31 0.0011 33.3 4.3 22 227-248 380-401 (433)
126 2dsj_A Pyrimidine-nucleoside ( 35.5 32 0.0011 33.3 4.3 22 227-248 372-393 (423)
127 2hsi_A Putative peptidase M23; 34.8 16 0.00054 33.3 1.9 20 227-246 232-251 (282)
128 3a7l_A H-protein, glycine clea 34.0 24 0.00081 28.4 2.7 32 251-282 29-61 (128)
129 1uou_A Thymidine phosphorylase 33.0 37 0.0013 33.3 4.3 23 226-248 414-436 (474)
130 2hsi_A Putative peptidase M23; 32.9 40 0.0014 30.6 4.3 59 207-281 191-249 (282)
131 1o4u_A Type II quinolic acid p 32.8 23 0.0008 32.3 2.7 20 227-246 75-94 (285)
132 1x1o_A Nicotinate-nucleotide p 31.7 25 0.00084 32.1 2.7 20 227-246 76-95 (286)
133 1qpo_A Quinolinate acid phosph 30.7 25 0.00086 32.0 2.6 20 227-246 75-94 (284)
134 2gu1_A Zinc peptidase; alpha/b 30.6 20 0.00069 33.3 1.9 21 227-247 284-304 (361)
135 3nyy_A Putative glycyl-glycine 30.0 54 0.0018 29.2 4.6 58 208-281 141-199 (252)
136 3tqv_A Nicotinate-nucleotide p 29.0 29 0.001 31.8 2.7 21 227-247 79-99 (287)
137 3l0g_A Nicotinate-nucleotide p 28.2 31 0.001 32.0 2.7 21 227-247 88-108 (300)
138 3gqb_A V-type ATP synthase alp 26.8 85 0.0029 31.6 5.7 37 228-264 122-160 (578)
139 2fqm_A Phosphoprotein, P prote 26.3 1.4E+02 0.0048 22.0 5.4 45 102-146 25-69 (75)
140 2lmc_B DNA-directed RNA polyme 26.0 20 0.0007 27.1 0.9 20 223-242 63-82 (84)
141 3gnn_A Nicotinate-nucleotide p 24.9 40 0.0014 31.1 2.8 21 227-247 90-110 (298)
142 2b7n_A Probable nicotinate-nuc 24.4 41 0.0014 30.2 2.7 20 227-246 62-81 (273)
143 3paj_A Nicotinate-nucleotide p 23.9 43 0.0015 31.2 2.8 21 227-247 112-132 (320)
144 1qap_A Quinolinic acid phospho 23.5 44 0.0015 30.5 2.8 21 227-247 89-109 (296)
145 2gu1_A Zinc peptidase; alpha/b 23.0 1.2E+02 0.0039 28.1 5.6 35 243-281 267-301 (361)
146 2qzb_A Uncharacterized protein 22.3 47 0.0016 28.3 2.5 42 229-271 45-89 (166)
147 1qwy_A Peptidoglycan hydrolase 22.3 93 0.0032 28.6 4.7 20 262-281 237-256 (291)
148 3mfy_A V-type ATP synthase alp 21.7 1E+02 0.0036 31.0 5.3 37 228-264 123-162 (588)
149 2jbm_A Nicotinate-nucleotide p 21.3 48 0.0016 30.2 2.6 20 227-246 75-94 (299)
No 1
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.67 E-value=2.3e-16 Score=118.55 Aligned_cols=76 Identities=54% Similarity=0.960 Sum_probs=73.2
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+||+.|++++.+.+...|++++||.|++||.|+.||+||+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 3699999999999988999999999999999999999999999999999999999999999999999999999985
No 2
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.57 E-value=3.7e-15 Score=113.98 Aligned_cols=69 Identities=20% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..|+||+.|++++ |+|++||.|++||+|+.||+||+.++|+||.+|+|.+++ +.|+.|..|++|++|.+
T Consensus 6 ~~v~a~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 6 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL 74 (84)
T ss_dssp TEECCSSSCCEEE-------ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred ceEECCCCEEEEE-------EECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence 3699999999999 999999999999999999999999999999999999999 99999999999999864
No 3
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.56 E-value=1e-14 Score=106.78 Aligned_cols=69 Identities=36% Similarity=0.582 Sum_probs=66.1
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
.|+||+.|++.+ |+|++||.|++||+|+.||++|+..+|+||.+|+|.+++++.|+.|..|++|+.|.+
T Consensus 1 ~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 1 TVSIQMAGNLWK-------VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp CEECCSSEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred CEECcccEEEEE-------EEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 378999999999 999999999999999999999999999999999999999999999999999999864
No 4
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.53 E-value=2.1e-14 Score=110.20 Aligned_cols=65 Identities=34% Similarity=0.483 Sum_probs=61.7
Q ss_pred CcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEcC
Q 023356 212 PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIVP 283 (283)
Q Consensus 212 P~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~pL~~Iep 283 (283)
...|++.+ |+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+ .|..|++|++|.+
T Consensus 17 ~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 17 MTMGTVQR-------WEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp CCEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred CCcEEEEE-------EEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 36789999 99999999999999999999999999999999999999999999 8999999999863
No 5
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.53 E-value=3.2e-14 Score=106.75 Aligned_cols=66 Identities=27% Similarity=0.355 Sum_probs=62.7
Q ss_pred CCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 211 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 211 AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
+++.|++.+ |+|++||.|++||+|+.||+||+.++|+||++|+|.++++++|+.|..|++|++|.+
T Consensus 12 ~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 12 SIADGTVAT-------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCSCEEECC-------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCEEEEE-------EEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 357899988 999999999999999999999999999999999999999999999999999999864
No 6
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.7e-14 Score=111.58 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=66.3
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..|++|+.|++.+ |+|++||.|++||+|+.||+||+..+|+||.+|+|. +++++|+.|..|++|++|.+
T Consensus 18 ~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 18 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp TEEECSSCEEEEE-------ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred cEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 4699999999999 999999999999999999999999999999999999 99999999999999999863
No 7
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.50 E-value=6.6e-14 Score=102.56 Aligned_cols=69 Identities=36% Similarity=0.670 Sum_probs=66.4
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+||+.|++.+ |++++||.|++||.|+.|+++++..+|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus 6 ~~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 6 NVVSAPMPGKVLR-------VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CEEECSSCEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred eEEecCCCEEEEE-------EEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4699999999998 89999999999999999999999999999999999999999999999999999985
No 8
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.50 E-value=7.3e-14 Score=103.60 Aligned_cols=71 Identities=34% Similarity=0.545 Sum_probs=67.5
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+...|+||+.|++.+ |++++||.|++||+|+.|+.+|+..+|+||.+|+|.+++++.|+.|..|++|+.|+
T Consensus 7 ~~~~v~a~~~G~v~~-------~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 7 GEGEIPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp CSSEEEBSSSCEEEE-------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCeEEECCCCEEEEE-------EEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 345799999999998 89999999999999999999999999999999999999999999999999999985
No 9
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.49 E-value=4.5e-14 Score=110.23 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=61.5
Q ss_pred cCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 213 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 213 ~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|++|++
T Consensus 17 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 17 REVTVKE-------WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp CCEEEEE-------ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred CCEEEEE-------EEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 5789999 999999999999999999999999999999999999999999999999999999864
No 10
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.49 E-value=4.6e-14 Score=143.94 Aligned_cols=71 Identities=39% Similarity=0.662 Sum_probs=68.0
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+...|+|||.|++++ |+|++||.|++||+|++||+|||+++|+||.+|+|+++++++|+.|..|++|++|+
T Consensus 611 ~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 611 TSKMLLCPMPGLIVK-------VDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CCSEEECCSCEEEEE-------ECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCCeEECCCcEEEEE-------EEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 345799999999999 99999999999999999999999999999999999999999999999999999985
No 11
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.5e-14 Score=111.42 Aligned_cols=64 Identities=27% Similarity=0.467 Sum_probs=61.1
Q ss_pred cCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCcc-CCCCeEEEEcC
Q 023356 213 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSV-SVDTPLLVIVP 283 (283)
Q Consensus 213 ~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V-~~G~pL~~Iep 283 (283)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|++|.+
T Consensus 20 ~~G~i~~-------~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~ 84 (98)
T 2dnc_A 20 EEGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 84 (98)
T ss_dssp SEECEEE-------ESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEEC
T ss_pred ccEEEEE-------EEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEec
Confidence 5788998 9999999999999999999999999999999999999999999999 99999999863
No 12
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.47 E-value=7.5e-14 Score=112.17 Aligned_cols=63 Identities=29% Similarity=0.395 Sum_probs=60.7
Q ss_pred cCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEc
Q 023356 213 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIV 282 (283)
Q Consensus 213 ~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~pL~~Ie 282 (283)
..|++.+ |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+ .|..|++|++|.
T Consensus 20 ~~G~v~~-------~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~ 83 (108)
T 2dne_A 20 QAGTIAR-------WEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV 83 (108)
T ss_dssp CEEEEEE-------CSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEE-------EEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence 5789998 99999999999999999999999999999999999999999999 899999999986
No 13
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.47 E-value=7.7e-14 Score=103.99 Aligned_cols=65 Identities=32% Similarity=0.357 Sum_probs=62.6
Q ss_pred CCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 211 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 211 AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+++.|++.+ |+|++||.|++||+|+.||++|+..+|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus 12 ~~~~G~v~~-------~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 12 GVTEGEIVR-------WDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SCCCEEEEE-------CSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCccEEEEE-------EEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 467899999 99999999999999999999999999999999999999999999999999999986
No 14
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.46 E-value=1.1e-13 Score=149.38 Aligned_cols=71 Identities=34% Similarity=0.485 Sum_probs=68.2
Q ss_pred CCCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 204 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 204 ~~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
.+...|+|||.|+|++ |+|++||.|++||+||+||+|||+++|+||++|+|++|++++|+.|++|++|++|
T Consensus 1165 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1165 DDAELLYSEYTGRFWK-------PVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp TTCEEEECSSCEEEEE-------ESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCcEEeCCCcEEEEE-------EEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 3456799999999999 9999999999999999999999999999999999999999999999999999987
No 15
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.45 E-value=1.6e-14 Score=110.30 Aligned_cols=69 Identities=25% Similarity=0.329 Sum_probs=65.7
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
.|++|..|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|.+
T Consensus 4 ~i~~p~~G~v~~-------~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~ 72 (85)
T 2k7v_A 4 EVNVPDIVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 72 (85)
T ss_dssp CCCCCSCCCCCS-------CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEEC
T ss_pred EEECCCeEEEEE-------EEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 578888899988 999999999999999999999999999999999999999999999999999999863
No 16
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.44 E-value=1.9e-13 Score=113.48 Aligned_cols=64 Identities=36% Similarity=0.523 Sum_probs=60.8
Q ss_pred cCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEcC
Q 023356 213 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIVP 283 (283)
Q Consensus 213 ~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~pL~~Iep 283 (283)
..|++.+ |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+ .|..|++|++|++
T Consensus 40 ~~G~V~~-------~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~ 104 (128)
T 1y8o_B 40 TMGTVQR-------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 104 (128)
T ss_dssp SEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred ccEEEEE-------EecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence 4688988 99999999999999999999999999999999999999999998 8999999999863
No 17
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=106.66 Aligned_cols=71 Identities=31% Similarity=0.548 Sum_probs=67.6
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
...|++|+.|++.+ |+|++||.|++||+|+.|+.+|+..+|+||.+|+|.+++++.|+.|..|++|++|.+
T Consensus 14 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~ 84 (99)
T 2ejm_A 14 QGGPLAPMTGTIEK-------VFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE 84 (99)
T ss_dssp CSSCBCSSSEEEEE-------ECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred ceEEecCCCEEEEE-------EECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence 34799999999999 999999999999999999999999999999999999999999999999999999863
No 18
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.43 E-value=2.5e-13 Score=101.73 Aligned_cols=63 Identities=25% Similarity=0.329 Sum_probs=60.8
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
.|++.+ |+|++||.|++||+|+.||++|+..+|+||++|+|.++++++|+.|..|++|++|.+
T Consensus 14 ~G~v~~-------~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 14 EVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEE-------CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred CEEEEE-------EEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 789988 999999999999999999999999999999999999999999999999999999863
No 19
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.43 E-value=3.4e-14 Score=110.87 Aligned_cols=70 Identities=34% Similarity=0.592 Sum_probs=32.1
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|+||+.|++.+ |+|++||.|++||+|+.||+||+..+|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 25 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 25 SSVLRSPMPGVVVA-------VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp CCCCCCSSSCEEEE-------ECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred ceEEECCCCEEEEE-------EECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 34699999999998 99999999999999999999999999999999999999999999999999999875
No 20
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.41 E-value=4e-13 Score=144.12 Aligned_cols=72 Identities=26% Similarity=0.413 Sum_probs=68.6
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
+...|.|||.|++++ |+|++||.|++||+||+||+|||+++|+||.+|+|++|++++|+.|..|++|++|++
T Consensus 1076 ~~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1076 NPSHIGAQMPGSVTE-------VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp CSSEEECSSSEEEEE-------ECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred CCceeecCceEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 445799999999999 999999999999999999999999999999999999999999999999999999974
No 21
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.41 E-value=7.1e-14 Score=105.13 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=64.3
Q ss_pred ccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 209 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 209 I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
+.+++.|++.+ |+|++||.|++||+|+.||+||+..+|+||.+|+|.+++++.|+.|..|++|++|.+
T Consensus 10 ~g~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 10 IGGHENVDIIA-------VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp CSSCSSEEEEE-------ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred CCCCCcEEEEE-------EEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 44678999998 999999999999999999999999999999999999999999999999999999864
No 22
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.38 E-value=4e-14 Score=144.25 Aligned_cols=71 Identities=30% Similarity=0.558 Sum_probs=0.0
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
...|+|||.|++++ |+|++||.|++||+||+||+|||.++|+||.+|+|+++++++|+.|..|++|++|++
T Consensus 602 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 602 QGGLSAPMNGSIVR-------VLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCeEECCCCEEEEE-------EEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 34799999999999 999999999999999999999999999999999999999999999999999999864
No 23
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.37 E-value=2.7e-14 Score=107.68 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=61.1
Q ss_pred cCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 213 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 213 ~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..|++.+ |+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|..|++|++|++
T Consensus 15 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 15 ADATVAT-------WHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp SCEECCB-------CCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred ccEEEEE-------EECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 5788888 999999999999999999999999999999999999999999999999999999864
No 24
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.37 E-value=7e-13 Score=99.33 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=55.5
Q ss_pred ccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
|+|++||.|++||+|+.||+||+..+|+||.+|+|.+++++.|+.|..|++|+.|.+
T Consensus 18 ~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 18 LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999864
No 25
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.26 E-value=9.9e-13 Score=110.28 Aligned_cols=54 Identities=31% Similarity=0.442 Sum_probs=52.0
Q ss_pred cCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEE---EcCCCCccC---CCC-eEEEEcC
Q 023356 230 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEI---LAEDGKSVS---VDT-PLLVIVP 283 (283)
Q Consensus 230 ~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~I---lve~Gd~V~---~G~-pL~~Iep 283 (283)
++||.|++||+||+||+||++++|.||++|+|++| ++++|+.|+ ||+ .|++|++
T Consensus 54 ~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~ 114 (136)
T 1zko_A 54 EVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEI 114 (136)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEE
T ss_pred CCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEE
Confidence 99999999999999999999999999999999999 899999999 998 9999864
No 26
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.20 E-value=4.1e-12 Score=130.69 Aligned_cols=70 Identities=27% Similarity=0.450 Sum_probs=67.2
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|+|||.|++++ |+|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 649 ~~~v~ap~~G~V~~-------v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 649 KGQIGAPMPGKVID-------IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SSCEECSSCEEEEE-------ECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CceEeCCCCeEEEE-------EEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999874
No 27
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.18 E-value=1.1e-11 Score=133.30 Aligned_cols=71 Identities=37% Similarity=0.568 Sum_probs=60.9
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
...|.|||.|++++ |+|++||.|++||+|++||+|||.++|+||.+|+|+++++++|+.|..|++|++|+.
T Consensus 1095 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~~ 1165 (1165)
T 2qf7_A 1095 AAHVGAPMPGVISR-------VFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYGG 1165 (1165)
T ss_dssp TTEEECSSCEEEEE-------ECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC--
T ss_pred CceeeCCCCeEEEE-------EEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEecC
Confidence 34699999999999 999999999999999999999999999999999999999999999999999999863
No 28
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.15 E-value=3.6e-12 Score=124.00 Aligned_cols=62 Identities=31% Similarity=0.534 Sum_probs=0.0
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-|++.+ |+|++||.|++||+||+||+||+.++|+|+++|+|.+|++++|+.|..|++|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (428)
T 3dva_I 16 EGEIVK-------WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 77 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cEEEEE-------EEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEe
Confidence 477777 99999999999999999999999999999999999999999999999999999985
No 29
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.11 E-value=6.4e-12 Score=113.31 Aligned_cols=62 Identities=27% Similarity=0.524 Sum_probs=0.0
Q ss_pred CeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCc-cCCCCeEEEEc
Q 023356 214 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS-VSVDTPLLVIV 282 (283)
Q Consensus 214 vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~-V~~G~pL~~Ie 282 (283)
.|++.+ |+|++||.|++||+||+||+||+.++|+|+++|+|.+|++++|+. |..|++|++|+
T Consensus 17 eG~I~~-------w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 17 EGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cEEEEE-------EecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEe
Confidence 467777 999999999999999999999999999999999999999999997 99999999885
No 30
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=99.00 E-value=3.5e-10 Score=90.03 Aligned_cols=69 Identities=36% Similarity=0.483 Sum_probs=63.0
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCee-----------------------------eeEecCCC
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLM-----------------------------NEIEADQS 258 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~-----------------------------~eI~Ap~s 258 (283)
.|.+++.|++.+ ++|++||.|++||+|+.|+..+.. ..|+||.+
T Consensus 3 ~v~a~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~ 75 (116)
T 2k32_A 3 IIKPQVSGVIVN-------KLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFD 75 (116)
T ss_dssp EECCSSCEEEEE-------ECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSS
T ss_pred EEeCcCCEEEEE-------EECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCC
Confidence 488999999998 899999999999999999987544 38999999
Q ss_pred eEEEEEEcCCCCccCCC-CeEEEEcC
Q 023356 259 GTIAEILAEDGKSVSVD-TPLLVIVP 283 (283)
Q Consensus 259 GvV~~Ilve~Gd~V~~G-~pL~~Iep 283 (283)
|+|.++.++.|+.|..| ++|+.|.+
T Consensus 76 G~V~~~~~~~G~~v~~g~~~l~~i~~ 101 (116)
T 2k32_A 76 GTIGDALVNIGDYVSASTTELVRVTN 101 (116)
T ss_dssp EEECCCSCCTTCEECTTTSCCEEEEC
T ss_pred EEEEEEECCCCCEEcCCCcEEEEEEC
Confidence 99999999999999999 99998853
No 31
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.79 E-value=3.1e-09 Score=88.38 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=54.9
Q ss_pred ccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEE---cCCCCccC---CCC-eEEEE
Q 023356 209 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL---AEDGKSVS---VDT-PLLVI 281 (283)
Q Consensus 209 I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Il---ve~Gd~V~---~G~-pL~~I 281 (283)
+..++.|.+... -+.++||.|++||.||+||+||+.++|.||++|+|++++ .++.+.|+ ||+ -|++|
T Consensus 30 ~a~~~lG~i~~v------~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i 103 (131)
T 1hpc_A 30 HAQDHLGEVVFV------ELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKI 103 (131)
T ss_dssp HHHHHHCSEEEE------ECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEE
T ss_pred hhcccCCCceEE------EecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEE
Confidence 345566655441 123999999999999999999999999999999999997 45666775 777 88888
Q ss_pred cC
Q 023356 282 VP 283 (283)
Q Consensus 282 ep 283 (283)
++
T Consensus 104 ~~ 105 (131)
T 1hpc_A 104 KP 105 (131)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 32
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.77 E-value=4.4e-09 Score=87.10 Aligned_cols=54 Identities=28% Similarity=0.438 Sum_probs=49.1
Q ss_pred cCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEc---CCCCcc---CCCC-eEEEEcC
Q 023356 230 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA---EDGKSV---SVDT-PLLVIVP 283 (283)
Q Consensus 230 ~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilv---e~Gd~V---~~G~-pL~~Iep 283 (283)
++||.|++||.+|+||+||+.++|.||++|+|++++. ++.+.| .||+ -||+|++
T Consensus 45 ~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~ 105 (128)
T 1onl_A 45 EVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKP 105 (128)
T ss_dssp CTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEE
T ss_pred CCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEE
Confidence 9999999999999999999999999999999999974 577777 7887 8888863
No 33
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.77 E-value=4.8e-09 Score=86.90 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=49.7
Q ss_pred ccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEc---CCCCccC---CCC-eEEEEcC
Q 023356 229 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA---EDGKSVS---VDT-PLLVIVP 283 (283)
Q Consensus 229 V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilv---e~Gd~V~---~G~-pL~~Iep 283 (283)
.++|+.|++||.||+||+||+.++|.||++|+|++++. .+.+.|+ ||+ -||+|++
T Consensus 45 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~ 106 (128)
T 3a7l_A 45 PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKA 106 (128)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEE
T ss_pred cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEE
Confidence 38999999999999999999999999999999999974 6777888 887 8888863
No 34
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.25 E-value=1.5e-06 Score=80.32 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=62.7
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCe------------------------------------
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL------------------------------------ 249 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~------------------------------------ 249 (283)
...|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 57 ~~~v~~~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~ 129 (359)
T 3lnn_A 57 LVKVLPPLAGRIVS-------LNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKR 129 (359)
T ss_dssp EEEECCSSCEEEEE-------CCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCT
T ss_pred EEEEeccCCEEEEE-------EEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 35789999999988 89999999999999999987542
Q ss_pred ----------------------------------------eeeEecCCCeEEEEEEcCCCCccCC-CCeEEEEc
Q 023356 250 ----------------------------------------MNEIEADQSGTIAEILAEDGKSVSV-DTPLLVIV 282 (283)
Q Consensus 250 ----------------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~-G~pL~~Ie 282 (283)
...|+||++|+|.++.++.|+.|.. |++|+.|.
T Consensus 130 ~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~ 203 (359)
T 3lnn_A 130 DFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVA 203 (359)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEe
Confidence 3579999999999999999999999 99999874
No 35
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.16 E-value=3.1e-06 Score=80.93 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=61.4
Q ss_pred CCccCCcCeEEEccCCCCCCccc-cCCCEEeCCceEEEEEec--------------------------------------
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFV-KVGDKVQKGQVVCIIEAM-------------------------------------- 247 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V-~vGd~V~~Gq~L~iIEam-------------------------------------- 247 (283)
..|.++..|++.+ .+| ++||.|++||+|+.|+..
T Consensus 122 ~~v~a~~~G~V~~-------v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~ 194 (413)
T 3ne5_B 122 AIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEAD 194 (413)
T ss_dssp EEECCSSCEEEEE-------ECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHH
T ss_pred EEEecccCEEEEE-------EEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHH
Confidence 4689999999988 788 999999999999999842
Q ss_pred ----------CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 248 ----------KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 248 ----------K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.....|+||++|+|.++.++.|+.|..|++|+.|.
T Consensus 195 ~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~ 239 (413)
T 3ne5_B 195 IRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 239 (413)
T ss_dssp HHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred HHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence 12458999999999999999999999999999874
No 36
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.13 E-value=7.2e-07 Score=79.74 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=60.8
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC--------------------------------------
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-------------------------------------- 248 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK-------------------------------------- 248 (283)
..|.++..|++.. ++|++||.|++||+|+.|+...
T Consensus 23 ~~v~a~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~ 95 (277)
T 2f1m_A 23 AEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYI 95 (277)
T ss_dssp EEECCSSCEEEEE-------ECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTC
T ss_pred EEEEccccEEEEE-------EEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4689999999998 8999999999999999998631
Q ss_pred ---------------------------------eeeeEecCCCeEEEEEEcCCCCccCCC--CeEEEEc
Q 023356 249 ---------------------------------LMNEIEADQSGTIAEILAEDGKSVSVD--TPLLVIV 282 (283)
Q Consensus 249 ---------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G--~pL~~Ie 282 (283)
-...|+||.+|+|..+.++.|+.|..| ++|+.|.
T Consensus 96 s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~ 164 (277)
T 2f1m_A 96 SKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ 164 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEe
Confidence 124899999999999999999999999 6898874
No 37
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.13 E-value=2.6e-06 Score=78.20 Aligned_cols=71 Identities=23% Similarity=0.395 Sum_probs=61.3
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCe-----------------------------------
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL----------------------------------- 249 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~----------------------------------- 249 (283)
....|.++..|++.. ++|++||.|++||+|+.|+....
T Consensus 30 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 102 (341)
T 3fpp_A 30 RKVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ 102 (341)
T ss_dssp SEEECCCSSCEEEEE-------ECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EEEEEeccCCcEEEE-------EEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999988 89999999999999999986411
Q ss_pred --------------------------------------------------eeeEecCCCeEEEEEEcCCCCccCCCCe--
Q 023356 250 --------------------------------------------------MNEIEADQSGTIAEILAEDGKSVSVDTP-- 277 (283)
Q Consensus 250 --------------------------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G~p-- 277 (283)
...|+||++|+|.++.++.|+.|..|++
T Consensus 103 ~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~ 182 (341)
T 3fpp_A 103 QRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAP 182 (341)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCC
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCc
Confidence 1459999999999999999999999987
Q ss_pred -EEEEc
Q 023356 278 -LLVIV 282 (283)
Q Consensus 278 -L~~Ie 282 (283)
|+.|.
T Consensus 183 ~l~~i~ 188 (341)
T 3fpp_A 183 NILTLA 188 (341)
T ss_dssp CCEEEE
T ss_pred eEEEEe
Confidence 88764
No 38
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.13 E-value=2.3e-06 Score=70.70 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=43.6
Q ss_pred cCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCC---CCccC---CCC-eEEEEc
Q 023356 230 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED---GKSVS---VDT-PLLVIV 282 (283)
Q Consensus 230 ~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~---Gd~V~---~G~-pL~~Ie 282 (283)
++|+.|++|+.+|.||++|+..+|.||++|+|++++..- -+.|. ||+ =|++|+
T Consensus 41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~ 100 (125)
T 3klr_A 41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMT 100 (125)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEE
T ss_pred CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEE
Confidence 899999999999999999999999999999999996543 33443 665 366654
No 39
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.95 E-value=3.8e-06 Score=78.71 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=61.1
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCe------------------------------------
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL------------------------------------ 249 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~------------------------------------ 249 (283)
...|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 43 ~~~v~a~v~G~V~~-------v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~ 115 (369)
T 1vf7_A 43 IAEVRPQVNGIILK-------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYA 115 (369)
T ss_dssp EEEECCSSCEEEEE-------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred EEEEEeeCceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 34689999999988 89999999999999999976321
Q ss_pred ---------------------eeeEecCCCeEEEEEEcCCCCccCCC--CeEEEEc
Q 023356 250 ---------------------MNEIEADQSGTIAEILAEDGKSVSVD--TPLLVIV 282 (283)
Q Consensus 250 ---------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G--~pL~~Ie 282 (283)
...|+||++|+|.++.++.|+.|..| ++|+.|.
T Consensus 116 ~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~ 171 (369)
T 1vf7_A 116 DANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQ 171 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEe
Confidence 25899999999999999999999995 8999874
No 40
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=97.86 E-value=5e-05 Score=71.12 Aligned_cols=67 Identities=21% Similarity=0.173 Sum_probs=57.8
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
...|+||..|.|+ ++++.||.|++||+|+.|... ....+|+||.+|+|.... ..-.|..|+.|+.|
T Consensus 257 ~~~v~A~~~Gl~~--------~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~I 326 (331)
T 3na6_A 257 DCYLFSEHDGLFE--------IMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAVI 326 (331)
T ss_dssp CCCEECSSCEEEE--------ESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEEE
T ss_pred cEEEeCCCCeEEE--------EcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEE
Confidence 4579999999887 479999999999999999984 567899999999997765 45679999999987
Q ss_pred c
Q 023356 282 V 282 (283)
Q Consensus 282 e 282 (283)
.
T Consensus 327 a 327 (331)
T 3na6_A 327 G 327 (331)
T ss_dssp E
T ss_pred e
Confidence 4
No 41
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.85 E-value=1.5e-05 Score=67.21 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=37.8
Q ss_pred cCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCC
Q 023356 230 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK 270 (283)
Q Consensus 230 ~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd 270 (283)
++|+.|++|+.+|.||++|...+|.||++|+|++++-+-.+
T Consensus 63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 89999999999999999999999999999999999865433
No 42
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.85 E-value=1.2e-05 Score=67.39 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=42.6
Q ss_pred cCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEc---CCCCcc---CCCC-eEEEEc
Q 023356 230 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA---EDGKSV---SVDT-PLLVIV 282 (283)
Q Consensus 230 ~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilv---e~Gd~V---~~G~-pL~~Ie 282 (283)
++|++|++|+.+|.||++|...+|.||++|+|++++- .+=+.| .||+ =|++|+
T Consensus 58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~ 117 (137)
T 3tzu_A 58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQ 117 (137)
T ss_dssp CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEE
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEE
Confidence 8999999999999999999999999999999999963 333333 4543 555554
No 43
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.71 E-value=8.6e-05 Score=69.91 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=57.6
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
...++|+..|.|. +.++.||.|++||+|+.|+.+ +...+|+||.+|+|..+. ....|..|+.|+.|
T Consensus 267 ~~~v~A~~~G~~~--------~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l~~i 336 (354)
T 3cdx_A 267 DAYVMAPRTGLFE--------PTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAVAVV 336 (354)
T ss_dssp GGEEECSSCEEEE--------ESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEEEEE
T ss_pred cEEEECCCCEEEE--------EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEEEEE
Confidence 3468999999665 578999999999999999984 778999999999997665 67789999999987
Q ss_pred c
Q 023356 282 V 282 (283)
Q Consensus 282 e 282 (283)
.
T Consensus 337 a 337 (354)
T 3cdx_A 337 M 337 (354)
T ss_dssp E
T ss_pred e
Confidence 4
No 44
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=97.63 E-value=9.4e-05 Score=70.39 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=57.8
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe------cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA------MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 279 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa------mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~ 279 (283)
...|+||..|.|+. .|+.||.|++||+|+.|.. .....+|+||.+|+|.... ..-.|..|+.|+
T Consensus 290 ~~~v~A~~~Gl~~~--------~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G~~l~ 359 (368)
T 3fmc_A 290 YRKFHAPKAGMVEY--------LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQGTELY 359 (368)
T ss_dssp EEEEECSSCEEEEE--------CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTTCEEE
T ss_pred cEEEecCCCEEEEE--------eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEE
Confidence 34689999999984 8999999999999999998 4577899999999996655 557899999999
Q ss_pred EEc
Q 023356 280 VIV 282 (283)
Q Consensus 280 ~Ie 282 (283)
.|-
T Consensus 360 ~i~ 362 (368)
T 3fmc_A 360 KVM 362 (368)
T ss_dssp EEE
T ss_pred EEe
Confidence 873
No 45
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.62 E-value=4.8e-06 Score=77.07 Aligned_cols=70 Identities=19% Similarity=0.442 Sum_probs=60.1
Q ss_pred CCCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCe-----------------------------------
Q 023356 205 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL----------------------------------- 249 (283)
Q Consensus 205 ~~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~----------------------------------- 249 (283)
....|.++..|++.. ++|++||.|++||+|+.|+....
T Consensus 31 ~~~~v~~~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 31 NTVDVGAQVSGKITK-------LYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRL 103 (369)
T ss_dssp SCCCBCCCSCSBCCE-------ECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred eeEEEecCCCcEEEE-------EEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445799999999988 89999999999999999986421
Q ss_pred --------------------------------------------------eeeEecCCCeEEEEEEcCCCCccCCCCe--
Q 023356 250 --------------------------------------------------MNEIEADQSGTIAEILAEDGKSVSVDTP-- 277 (283)
Q Consensus 250 --------------------------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G~p-- 277 (283)
...|+||++|+|.++.++.|+.|..|++
T Consensus 104 ~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~ 183 (369)
T 4dk0_A 104 SKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTP 183 (369)
T ss_dssp HHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCC
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcc
Confidence 1359999999999999999999999998
Q ss_pred -EEEE
Q 023356 278 -LLVI 281 (283)
Q Consensus 278 -L~~I 281 (283)
|+.|
T Consensus 184 ~l~~i 188 (369)
T 4dk0_A 184 TIIKV 188 (369)
T ss_dssp CCBBC
T ss_pred eEEEE
Confidence 6654
No 46
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=3.5e-05 Score=59.98 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=42.2
Q ss_pred CceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 238 GQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 238 Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
|..+|.++.++....|.|+.+|+|.++++++||.|..||+|++|+
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le 49 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 49 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 566799999999999999999999999999999999999999986
No 47
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.49 E-value=0.00011 Score=62.74 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=35.7
Q ss_pred cCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEc
Q 023356 230 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 266 (283)
Q Consensus 230 ~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilv 266 (283)
++|+.|++|+.+|.||+.|...+|.||++|+|++++-
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 8999999999999999999999999999999999874
No 48
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=97.41 E-value=0.0002 Score=61.39 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=55.4
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeC----CceEEEEEecCeeeeEecCCCeEEEEE------------------
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAEI------------------ 264 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~----Gq~L~iIEamK~~~eI~Ap~sGvV~~I------------------ 264 (283)
..|.||+.|++.. ..++.|.|-. |+.+++... ...|+||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL 81 (162)
T 1ax3_A 13 EVFVSPITGEIHP--------ITDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREIL 81 (162)
T ss_dssp SSCCCCCSEEEEE--------GGGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEE
T ss_pred CEEEecCceEEEE--------eEECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEE
Confidence 3599999999996 5677777666 888888877 458899999999988
Q ss_pred -----------------EcCCCCccCCCCeEEEEc
Q 023356 265 -----------------LAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 265 -----------------lve~Gd~V~~G~pL~~Ie 282 (283)
+|+.||.|..|++|+++.
T Consensus 82 iHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 82 IHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp EECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred EEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 899999999999999874
No 49
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=97.35 E-value=0.00022 Score=61.08 Aligned_cols=65 Identities=28% Similarity=0.410 Sum_probs=55.6
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeC----CceEEEEEecCeeeeEecCCCeEEEEE------------------
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAEI------------------ 264 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~----Gq~L~iIEamK~~~eI~Ap~sGvV~~I------------------ 264 (283)
..|.||+.|++.. .-++.|.+-. |+.+++...+ ..|+||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL 81 (161)
T 1f3z_A 13 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELF 81 (161)
T ss_dssp EEEECSSCEEEEE--------GGGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cEEEecCCeEEEE--------eEECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEE
Confidence 3599999999996 4567777666 8888888875 58899999999988
Q ss_pred -----------------EcCCCCccCCCCeEEEEc
Q 023356 265 -----------------LAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 265 -----------------lve~Gd~V~~G~pL~~Ie 282 (283)
+|+.||.|..|++|+++.
T Consensus 82 iHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 82 VHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 899999999999999874
No 50
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=97.33 E-value=0.00025 Score=60.29 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=55.2
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeC----CceEEEEEecCeeeeEecCCCeEEEE--------------------
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAE-------------------- 263 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~----Gq~L~iIEamK~~~eI~Ap~sGvV~~-------------------- 263 (283)
.|.||+.|++.. .-++.|.|-. |+.+++...+ ..|+||++|+|..
T Consensus 9 ~i~aP~~G~vv~--------l~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi 77 (154)
T 2gpr_A 9 KVLAPCDGTIIT--------LDEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL 77 (154)
T ss_dssp EEECSSSEEEEC--------GGGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred EEEecCCeEEEE--------eeECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence 589999999996 4577777766 8889988875 6899999999997
Q ss_pred ---------------EEcCCCCccCCCCeEEEEc
Q 023356 264 ---------------ILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 264 ---------------Ilve~Gd~V~~G~pL~~Ie 282 (283)
++|+.||.|..|++|+++.
T Consensus 78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred EECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence 4899999999999999874
No 51
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=96.89 E-value=0.0026 Score=59.04 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=55.4
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe----cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA----MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa----mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..++|+..|.|.. +++.|+.|++||+|+.|.. +....+|+||.+|+|.-.. ..-.|..|+.|+.|.
T Consensus 258 ~~~~a~~~G~~~~--------~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia 327 (332)
T 2qj8_A 258 DQLKSPSPGIFEP--------RCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILA 327 (332)
T ss_dssp GEEECSSSEEEEE--------CSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEE
T ss_pred eEEeCCCCeEEEE--------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEe
Confidence 3588999998774 7899999999999999965 5678899999999996665 566788999998873
No 52
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.80 E-value=0.0011 Score=47.59 Aligned_cols=31 Identities=6% Similarity=0.283 Sum_probs=29.2
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 252 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 252 eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|.|+.+|+|.++++++|+.|..|++|++|+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~ 31 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILE 31 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEE
Confidence 4789999999999999999999999999986
No 53
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.67 E-value=0.0018 Score=46.45 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=30.2
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|.|+.+|+|.++++++||.|..|++|++|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~ 37 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLE 37 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEe
Confidence 46899999999999999999999999999986
No 54
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.57 E-value=0.0021 Score=46.67 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=30.7
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|.|+.+|+|.++++++|+.|..|++|++|+
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~ 40 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE 40 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEE
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEE
Confidence 357899999999999999999999999999986
No 55
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.39 E-value=0.0017 Score=48.84 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=30.3
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|.|+.+|+|.++++++|+.|..|++|+.|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie 37 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 37 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEE
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 46999999999999999999999999999986
No 56
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=95.83 E-value=0.0056 Score=47.33 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=30.7
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|.++.+|+|.++++++|+.|..|++|++|+
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 46 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMI 46 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEE
T ss_pred ceEEecCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 456899999999999999999999999999986
No 57
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=95.81 E-value=0.0059 Score=56.09 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=44.2
Q ss_pred ccCCCEEeCCceEEEEEec-CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 229 VKVGDKVQKGQVVCIIEAM-KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 229 V~vGd~V~~Gq~L~iIEam-K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
|+.|+.-..-..-+.|++. .-...|.++.+|+|.++++++||.|..|++|++|++
T Consensus 35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~ 90 (359)
T 3lnn_A 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS 90 (359)
T ss_dssp CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEEC
T ss_pred eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEECh
Confidence 3334433344566788875 567899999999999999999999999999999864
No 58
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.81 E-value=0.009 Score=52.60 Aligned_cols=51 Identities=29% Similarity=0.412 Sum_probs=40.8
Q ss_pred CCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEE-----------------------------cCCCCccC
Q 023356 223 PGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL-----------------------------AEDGKSVS 273 (283)
Q Consensus 223 ~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Il-----------------------------ve~Gd~V~ 273 (283)
-+...+|+.|+.|++||+||.=. +|.++++|+|.+.. +++|+.|.
T Consensus 19 yGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~ 92 (193)
T 2xha_A 19 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK 92 (193)
T ss_dssp TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEEC
T ss_pred CCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEc
Confidence 35557899999999999999755 89999999886544 67778888
Q ss_pred CCCeEE
Q 023356 274 VDTPLL 279 (283)
Q Consensus 274 ~G~pL~ 279 (283)
.|++|+
T Consensus 93 ~GdvLA 98 (193)
T 2xha_A 93 QGLPLS 98 (193)
T ss_dssp TTSBSS
T ss_pred CCCEEe
Confidence 887764
No 59
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=95.79 E-value=0.0053 Score=47.11 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=30.7
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|.|+.+|+|.++++++||.|..||+|++|+
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 57 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIE 57 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEE
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEe
Confidence 356899999999999999999999999999986
No 60
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=95.78 E-value=0.0094 Score=54.33 Aligned_cols=44 Identities=25% Similarity=0.284 Sum_probs=37.4
Q ss_pred ceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 239 QVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 239 q~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..-+.|+.. -...|.++.+|+|.++++++||.|..|++|++|++
T Consensus 21 ~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 64 (341)
T 3fpp_A 21 LATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 64 (341)
T ss_dssp EEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECC
T ss_pred EEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEECh
Confidence 345666665 35689999999999999999999999999999864
No 61
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=95.64 E-value=0.011 Score=42.93 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=30.2
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
..|+||+.|++.+ .++++||.|..|+.|+.|++
T Consensus 45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 45 VKIPSPVRGKIVK-------ILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EECCCCCCEEEEE-------ECCCTTCEECSCSEEEEEEC
T ss_pred EEEECCCCEEEEE-------EEeCCcCEECCCCEEEEEEC
Confidence 4799999999998 78999999999999999874
No 62
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.42 E-value=0.0079 Score=44.12 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=29.8
Q ss_pred eeEecCCCeEEEEE-------EcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEI-------LAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~I-------lve~Gd~V~~G~pL~~Ie 282 (283)
..|.|+.+|+|.++ +++.||.|..|++|++|+
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie 43 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVE 43 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEE
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEE
Confidence 36899999999998 999999999999999986
No 63
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=95.09 E-value=0.013 Score=54.49 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=36.3
Q ss_pred eEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 240 VVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 240 ~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
..+.|+.. -...|.++.+|+|.++++++||.|..|++|++|++
T Consensus 34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp EEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 34566654 35679999999999999999999999999999964
No 64
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=95.08 E-value=0.013 Score=42.80 Aligned_cols=34 Identities=35% Similarity=0.562 Sum_probs=31.1
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
...|+||+.|++.+ .++++||.|..|+.|+.|+.
T Consensus 43 ~~~i~Ap~~G~v~~-------~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 43 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEBSSCEEEEE-------CCCCTTCEECTTCCCEEEES
T ss_pred eEEEeCCCCEEEEE-------EecCCCCEECCCCEEEEEEc
Confidence 45799999999998 78999999999999999975
No 65
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.89 E-value=0.024 Score=53.87 Aligned_cols=50 Identities=28% Similarity=0.370 Sum_probs=40.6
Q ss_pred CCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEE-----------------------------cCCCCccCC
Q 023356 224 GEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL-----------------------------AEDGKSVSV 274 (283)
Q Consensus 224 ~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Il-----------------------------ve~Gd~V~~ 274 (283)
++..+|+.|+.|++||+||.=. +|.++++|+|.+.. +++|+.|..
T Consensus 60 ga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~ 133 (352)
T 2xhc_A 60 KAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQ 133 (352)
T ss_dssp TCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECT
T ss_pred CCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEcc
Confidence 4446799999999999999866 88888888886543 778888888
Q ss_pred CCeEE
Q 023356 275 DTPLL 279 (283)
Q Consensus 275 G~pL~ 279 (283)
|++|+
T Consensus 134 G~vla 138 (352)
T 2xhc_A 134 GLPLS 138 (352)
T ss_dssp TCBSB
T ss_pred CcEEe
Confidence 88775
No 66
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=94.83 E-value=0.041 Score=48.05 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=51.4
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEe----CCceEEEEEecCeeeeEecCCCeEEE--------------------
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQ----KGQVVCIIEAMKLMNEIEADQSGTIA-------------------- 262 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~----~Gq~L~iIEamK~~~eI~Ap~sGvV~-------------------- 262 (283)
..|.||+.|.+.. +-++-|.|= =|+-++++-.. ..|.||++|+|.
T Consensus 35 ~~i~aPv~G~vi~--------L~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvL 103 (183)
T 3our_B 35 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGVELF 103 (183)
T ss_dssp EEEECSSCEEEEE--------GGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eEEEeecceEEEE--------chhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCCEEE
Confidence 4699999999985 455555542 38888887654 379999999988
Q ss_pred ---------------EEEcCCCCccCCCCeEEEEc
Q 023356 263 ---------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 263 ---------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+.+|++||.|..||+|+++.
T Consensus 104 IHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 104 VHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence 67888999999999999874
No 67
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=94.78 E-value=0.026 Score=41.31 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=30.7
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
..|+||+.|++.. .++++|+.|..|+.|+.|+..
T Consensus 42 ~~i~Ap~~G~v~~-------~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 42 MEVPSPKAGVVKS-------VSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEECSSSSEEEE-------ESCCTTCEEETTSEEEEEECC
T ss_pred EEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence 4699999999998 789999999999999998753
No 68
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=94.69 E-value=0.036 Score=41.54 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 257 QSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 257 ~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+|+|.+++++.||.|..|++|++|+
T Consensus 18 ~~G~v~~~~v~~Gd~V~~G~~l~~ie 43 (87)
T 3crk_C 18 TMGTVQRWEKKVGEKLSEGDLLAEIE 43 (87)
T ss_dssp CEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred CcEEEEEEEcCCCCEEcCCCEEEEEE
Confidence 57999999999999999999999986
No 69
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=94.65 E-value=0.013 Score=53.77 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=42.4
Q ss_pred ccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023356 229 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 283 (283)
Q Consensus 229 V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Iep 283 (283)
|+.|+.-..=..-+.|+... ...|.++.+|+|.++++++||.|..|++|++|.+
T Consensus 12 v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESIN-TVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS 65 (369)
T ss_dssp CCEECCCCCCEEEEEEECSS-CCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred EEecceeEEEEEeEEEEeee-eEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence 44444444455567777653 5579999999999999999999999999999863
No 70
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=94.59 E-value=0.033 Score=42.62 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 257 QSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 257 ~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+|+|.++++++||.|..|++|++|+
T Consensus 17 ~~G~v~~~~v~~Gd~V~~G~~l~~ie 42 (93)
T 1k8m_A 17 REVTVKEWYVKEGDTVSQFDSICEVQ 42 (93)
T ss_dssp CCEEEEEECCCTTCEECSSSCCEEEE
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 58999999999999999999999986
No 71
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=94.57 E-value=0.025 Score=41.36 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
...|+||..|++.. .++++||.|..|+.|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 44 VMEVLAEADGVIAE-------IVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEEECSSCEEEEE-------ESSCTTCEECTTCEEEEECC
T ss_pred eEEEEcCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence 34799999999998 78999999999999999874
No 72
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=94.44 E-value=0.029 Score=44.30 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=28.4
Q ss_pred eeeeEecC------CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 249 LMNEIEAD------QSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 249 ~~~eI~Ap------~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
|..+|+.| ..|+|.+++++.||.|..||+|++|+
T Consensus 6 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE 45 (108)
T 2dne_A 6 SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVE 45 (108)
T ss_dssp CCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEE
T ss_pred cceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEE
Confidence 34455544 47999999999999999999999986
No 73
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=94.26 E-value=0.031 Score=40.97 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=27.2
Q ss_pred EecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 253 IEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 253 I~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+-++..|+|.+++++.||.|..|++|+.|+
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie 39 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLE 39 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEE
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 445789999999999999999999999986
No 74
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=94.20 E-value=0.045 Score=52.01 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=43.3
Q ss_pred ccCCCEEeCCceEEEEEec-CeeeeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023356 229 VKVGDKVQKGQVVCIIEAM-KLMNEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 282 (283)
Q Consensus 229 V~vGd~V~~Gq~L~iIEam-K~~~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~pL~~Ie 282 (283)
|+.|+.-..=...+.|+.+ .-...|.++.+|+|.+++| ++||.|..||+|++|.
T Consensus 99 v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld 154 (413)
T 3ne5_B 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 154 (413)
T ss_dssp CEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEE
T ss_pred EEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEc
Confidence 4444444455566777763 4567899999999999998 9999999999999986
No 75
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.80 E-value=0.044 Score=42.42 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 257 QSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 257 ~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+|.++++++||.|..||+|++|+
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie 45 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIE 45 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEE
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEE
Confidence 47999999999999999999999986
No 76
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=93.77 E-value=0.021 Score=42.56 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=31.6
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEec
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEam 247 (283)
...|+||+.|++.+ .++++||.|..|+.|+.|+..
T Consensus 39 ~~~i~Ap~~G~V~~-------~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 39 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp EEEEECSSCBCCCE-------ECSCTTCCBCTTSEEEEEECC
T ss_pred EEEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEEcC
Confidence 45799999999988 789999999999999999864
No 77
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=93.57 E-value=0.025 Score=41.60 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEe
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
...|+||..|++.+ .++++||.|..|+.|+.|+.
T Consensus 45 ~~~i~Ap~~G~v~~-------~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 45 VLEVPASADGILDA-------VLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCCBCCSBCCCCB-------CTTCTTCEECSSSEEEBCCC
T ss_pred EEEEECCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence 45799999999988 79999999999999998864
No 78
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=93.51 E-value=0.036 Score=46.92 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCccCCcCeEEEccCC----------CCC------------------CccccCCCEEeCCceEEEEEecC---------e
Q 023356 207 PPLKCPMAGTFYRCPA----------PGE------------------PAFVKVGDKVQKGQVVCIIEAMK---------L 249 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~----------~~~------------------~~~V~vGd~V~~Gq~L~iIEamK---------~ 249 (283)
..|+||..|++....+ -+. ..+|++||+|++||.|+.+.-.. .
T Consensus 45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t 124 (154)
T 2gpr_A 45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS 124 (154)
T ss_dssp SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence 4799999999875321 011 15899999999999999886422 1
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..-|.- ..+..+....+..|..|+.|+.++
T Consensus 125 ~vvvtn---~~~~~~~~~~~~~v~~g~~~~~~~ 154 (154)
T 2gpr_A 125 PIIFTN---NGGKTLEIVKMGEVKQGDVVAILK 154 (154)
T ss_dssp EEEEEE---CSSCCCSCBCCEEECTTCEEEEEC
T ss_pred EEEEEC---CCcceEEEccCceEcCCCEEEEeC
Confidence 122222 111223334466788899998874
No 79
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=93.27 E-value=0.079 Score=43.39 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 257 QSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 257 ~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+|.+++++.||.|..||+|++|+
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iE 65 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIE 65 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEE
Confidence 46999999999999999999999986
No 80
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=93.25 E-value=0.1 Score=44.93 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=36.4
Q ss_pred ccccCCCEEeCCceEEEEEecCee-eeEecCCCeEEEEEEcC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMKLM-NEIEADQSGTIAEILAE 267 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK~~-~eI~Ap~sGvV~~Ilve 267 (283)
+.+.+|+.|.+|+.|+.|.+.|-. .-|+||++|+|.-+.=-
T Consensus 114 ~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 114 PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp ECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred EEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 689999999999999999999976 57999999999877633
No 81
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=93.07 E-value=0.11 Score=45.17 Aligned_cols=47 Identities=19% Similarity=0.129 Sum_probs=39.5
Q ss_pred CCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCc
Q 023356 223 PGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 271 (283)
Q Consensus 223 ~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~ 271 (283)
.+...+|+.|+.|++||+||.. ++-..+|.++++|+|.=-.+.+|..
T Consensus 60 yGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 60 YGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp TTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred CCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 4556789999999999999965 6899999999999997766776654
No 82
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=92.85 E-value=0.041 Score=48.37 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=40.7
Q ss_pred CCCcc--ccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEE--------------------------E--EcCCCCccC
Q 023356 224 GEPAF--VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAE--------------------------I--LAEDGKSVS 273 (283)
Q Consensus 224 ~~~~~--V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~--------------------------I--lve~Gd~V~ 273 (283)
+.-.. |+.|+.|+.||+|+ -...|.|+.+|+|.- + +|.+||.|.
T Consensus 78 gA~l~~~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~ 151 (193)
T 2xha_A 78 SAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVK 151 (193)
T ss_dssp GGCCCTTCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEEC
T ss_pred CCEEEEEcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEEC
Confidence 44466 89999999999998 345678888888741 3 899999999
Q ss_pred CCCeEE
Q 023356 274 VDTPLL 279 (283)
Q Consensus 274 ~G~pL~ 279 (283)
.|+.|.
T Consensus 152 ~Ge~L~ 157 (193)
T 2xha_A 152 QGEMLA 157 (193)
T ss_dssp TTCEEE
T ss_pred CCCCcc
Confidence 999986
No 83
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=92.11 E-value=0.082 Score=45.07 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=45.1
Q ss_pred CCCccCCcCeEEEccCCC----------CC------------------CccccCCCEEeCCceEEEEEecC-------ee
Q 023356 206 HPPLKCPMAGTFYRCPAP----------GE------------------PAFVKVGDKVQKGQVVCIIEAMK-------LM 250 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~----------~~------------------~~~V~vGd~V~~Gq~L~iIEamK-------~~ 250 (283)
...|+||..|++....+- +. ..+|++||+|++||.|+.+.-.. ..
T Consensus 49 ~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~ 128 (162)
T 1ax3_A 49 EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLM 128 (162)
T ss_dssp SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHHHHGGGSSCCC
T ss_pred CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEECHHHHHhcCCCCE
Confidence 347899999998754221 11 14899999999999999886432 22
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCC-eEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDT-PLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~-pL~~Ie 282 (283)
..|.-.-......+....+..|..|+ .|+.+.
T Consensus 129 t~vvvtn~~~~~~~~~~~~~~v~~g~~~i~~~~ 161 (162)
T 1ax3_A 129 TPIVFTNLAEGETVSIKASGSVNREQEDIVKIE 161 (162)
T ss_dssp EEEEESSGGGTCEEEECCCSEECTTCSSSEEEE
T ss_pred EEEEEECCcccceEEeccCceEecCCEEEEEEe
Confidence 22222211112223333445577777 566553
No 84
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=91.59 E-value=0.13 Score=52.39 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=30.9
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
...|+||..|+|.+++|++||.|..||+|++|+
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 644 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIE 644 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 357999999999999999999999999999986
No 85
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=90.94 E-value=0.23 Score=42.30 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=30.1
Q ss_pred CCccCCcCeEEEccCCC----------C------------------CCccccCCCEEeCCceEEEEEe
Q 023356 207 PPLKCPMAGTFYRCPAP----------G------------------EPAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~----------~------------------~~~~V~vGd~V~~Gq~L~iIEa 246 (283)
..|+||..|++....+- + -..+|++||+|++||.|+.+.-
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 47899999998754210 1 1138999999999999998864
No 86
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=90.60 E-value=0.28 Score=45.91 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=46.6
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
.|+++..|.+...+ ..++.|+.|++||+|+.+-. .+|+++.+|.+.- .. .-.|..|+.++.|
T Consensus 265 ~v~a~~~g~~~~~~-----~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i 326 (350)
T 2bco_A 265 TIVRLHDDFDFMFD-----DNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIV--FP-NRHVAIGQRAALM 326 (350)
T ss_dssp EEECCSSSEEESSC-----TTCCBTEECCTTCEEEEETT----EEEECSSSSCEEE--SC-CTTCCTTSEEEEE
T ss_pred EEEcCCCCeEEecc-----ccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEE--ec-CCCCCCCcEEEEE
Confidence 46677777665211 35799999999999999854 7899999998644 33 5678889977765
No 87
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=90.55 E-value=0.15 Score=39.57 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=30.8
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCC-ceEEEEEec
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKG-QVVCIIEAM 247 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~G-q~L~iIEam 247 (283)
...|+||+.|++.. ..+++|+.|..| +.|+.|...
T Consensus 67 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~~l~~i~~~ 102 (116)
T 2k32_A 67 HTEIKAPFDGTIGD-------ALVNIGDYVSASTTELVRVTNL 102 (116)
T ss_dssp EEEEECSSSEEECC-------CSCCTTCEECTTTSCCEEEECS
T ss_pred CCEEEcCCCEEEEE-------EECCCCCEEcCCCcEEEEEECC
Confidence 34799999999998 789999999999 999988764
No 88
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=88.98 E-value=0.41 Score=41.68 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.3
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
.+|++||+|++||.|+.+.-
T Consensus 120 ~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 120 RIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp ECSCTTCEECTTCEEEEECH
T ss_pred EEEeCcCEEcCCCEEEEECH
Confidence 88999999999999998864
No 89
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=88.48 E-value=0.27 Score=50.75 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=30.4
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|.||..|+|.+++|++||.|..||+|++|+
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iE 681 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS 681 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEE
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEe
Confidence 46999999999999999999999999999986
No 90
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=88.02 E-value=0.39 Score=52.70 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=30.9
Q ss_pred CCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEE
Q 023356 224 GEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIA 262 (283)
Q Consensus 224 ~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~ 262 (283)
+...+|+.||.|++||+||.. +.-..+|.++++|+|.
T Consensus 1000 gs~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1000 GAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp TCEESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred CCEEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 344789999999999999876 4678899999999874
No 91
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=87.82 E-value=0.36 Score=52.11 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=30.5
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ie 1109 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITE 1109 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 57999999999999999999999999999986
No 92
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=87.44 E-value=0.4 Score=52.25 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=30.2
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|.||..|+|.+++|++||.|+.||+|++|+
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 1199 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIE 1199 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 46999999999999999999999999999986
No 93
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=86.65 E-value=0.13 Score=52.35 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=0.0
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..|+||..|+|.+++|++||.|+.||+|+.|+
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 634 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLE 634 (675)
T ss_dssp --------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 46899999999999999999999999999886
No 94
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=85.98 E-value=0.17 Score=47.99 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCCcc--ccCCCEEeCCceEEEEEecCeeeeEecCCCeEEE------------------E----------EEcCCCCccC
Q 023356 224 GEPAF--VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIA------------------E----------ILAEDGKSVS 273 (283)
Q Consensus 224 ~~~~~--V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~------------------~----------Ilve~Gd~V~ 273 (283)
+.-.. |+.|+.|+.||+|+ -...|.|+.+|+|. + ++|.+||.|.
T Consensus 118 ga~l~~~v~~g~~v~~G~vla------k~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V~ 191 (352)
T 2xhc_A 118 SAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVK 191 (352)
T ss_dssp GGCBCTTCCTTCEECTTCBSB------SSSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEEC
T ss_pred CcEEEEecCCCCEEccCcEEe------cCceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEEe
Confidence 34456 89999999999887 22445555555554 2 2367888999
Q ss_pred CCCeEE
Q 023356 274 VDTPLL 279 (283)
Q Consensus 274 ~G~pL~ 279 (283)
.|+.|.
T Consensus 192 ~G~~l~ 197 (352)
T 2xhc_A 192 QGEMLA 197 (352)
T ss_dssp TTCEEE
T ss_pred CCCCcc
Confidence 999886
No 95
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=84.77 E-value=0.62 Score=50.35 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=20.0
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 252 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 252 eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 1097 ~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iE 1127 (1165)
T 2qf7_A 1097 HVGAPMPGVISRVFVSSGQAVNAGDVLVSIE 1127 (1165)
T ss_dssp EEECSSCEEEEEECCSSCCCC---CEEEEEE
T ss_pred eeeCCCCeEEEEEEcCCcCEeCCCCEEEEEE
Confidence 4677777777777777777777777777664
No 96
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=83.92 E-value=0.99 Score=39.61 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCCccCCcCeEEEccCCCCCCccccCCCEEeCC--ceEEEEEe
Q 023356 206 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKG--QVVCIIEA 246 (283)
Q Consensus 206 ~~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~G--q~L~iIEa 246 (283)
...|+||+.|++.. .++++|+.|..| +.|+.|..
T Consensus 130 ~~~I~AP~~G~V~~-------~~~~~G~~v~~g~~~~l~~i~~ 165 (277)
T 2f1m_A 130 YTKVTSPISGRIGK-------SNVTEGALVQNGQATALATVQQ 165 (277)
T ss_dssp TTEECCSSCEEECC-------CSSCBTCEECTTCSSCSEEEEE
T ss_pred cCEEECCCCeEEEe-------EEcCCCCEEcCCCCceeEEEec
Confidence 45799999999998 789999999999 57887754
No 97
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=78.10 E-value=0.44 Score=46.07 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecC
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK 248 (283)
..|.||..|++.+ .+|++||.|..||+|++|+...
T Consensus 46 ~~i~ap~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 46 VEIPSPVKGKVLE-------ILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp ------------------------------------------
T ss_pred EEEecCCCeEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence 4699999999998 8999999999999999998643
No 98
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=75.67 E-value=0.56 Score=41.76 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=0.0
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCE-EeCCceEEEEEe
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDK-VQKGQVVCIIEA 246 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~-V~~Gq~L~iIEa 246 (283)
..|.||..|++.+ .+|++||. |..|+.|++|+.
T Consensus 47 ~ei~Ap~~G~v~~-------i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 47 VTLDASDDGILAK-------IVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp -----------------------------------------
T ss_pred eEEecCCCeEEEE-------EEecCCCeeecCCCEEEEEec
Confidence 4699999999998 79999997 999999999974
No 99
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=72.37 E-value=3.1 Score=39.20 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.0
Q ss_pred eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 249 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 249 ~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-..-|+|+.+|.+ +..++.|+.|+.||+|++|.
T Consensus 289 ~~~~v~A~~~Gl~-~~~v~lGd~V~kG~~la~I~ 321 (368)
T 3fmc_A 289 NYRKFHAPKAGMV-EYLGKVGVPMKATDPLVNLL 321 (368)
T ss_dssp GEEEEECSSCEEE-EECSCTTCCBCTTCEEEEEE
T ss_pred CcEEEecCCCEEE-EEeCCCCCEeCCCCEEEEEE
Confidence 3456899999987 68999999999999999985
No 100
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=66.38 E-value=4.5 Score=37.36 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=28.8
Q ss_pred CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 248 KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 248 K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.-..-|+|+.+|.+ +.+++.|+.|+.||+|++|.
T Consensus 255 ~~~~~v~A~~~Gl~-~~~v~~Gd~V~~G~~la~I~ 288 (331)
T 3na6_A 255 DGDCYLFSEHDGLF-EIMIDLGEPVQEGDLVARVW 288 (331)
T ss_dssp CSCCCEECSSCEEE-EESSCTTCEECTTCEEEEEE
T ss_pred CCcEEEeCCCCeEE-EEcCCCCCEEcCCCEEEEEE
Confidence 33556899999966 56899999999999999985
No 101
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=63.30 E-value=7.4 Score=36.10 Aligned_cols=35 Identities=17% Similarity=-0.002 Sum_probs=29.1
Q ss_pred cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 247 MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 247 mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.+-..-++|+.+|. .+..++.|+.|+.|++|+.|.
T Consensus 264 ~~~~~~v~A~~~G~-~~~~~~~g~~V~~G~~La~i~ 298 (354)
T 3cdx_A 264 READAYVMAPRTGL-FEPTHYVGEEVRTGETAGWIH 298 (354)
T ss_dssp CCGGGEEECSSCEE-EEESCCTTCEECTTSEEEEEE
T ss_pred cCCcEEEECCCCEE-EEEeCCCCCEeCCCCEEEEEE
Confidence 34556689999995 577789999999999999975
No 102
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=60.33 E-value=9.1 Score=37.60 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=32.2
Q ss_pred EEecCeeeeEecCCCeEE-----------------------------EEEEcCCCCccCCCCeEEEEc
Q 023356 244 IEAMKLMNEIEADQSGTI-----------------------------AEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 244 IEamK~~~eI~Ap~sGvV-----------------------------~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+..-+...+|.|+.+|.| ..++++.||.|+.|++|++|.
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~ 433 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVH 433 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEE
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEE
Confidence 445677788999999988 357788999999999999984
No 103
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=57.51 E-value=4.4 Score=44.67 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=18.5
Q ss_pred CCCCccccCCCEEeCCceEEEE
Q 023356 223 PGEPAFVKVGDKVQKGQVVCII 244 (283)
Q Consensus 223 ~~~~~~V~vGd~V~~Gq~L~iI 244 (283)
.+.-..|+.|+.|+.||+|+.|
T Consensus 1103 ~~a~~~v~~g~~v~~g~vlaki 1124 (1407)
T 3lu0_D 1103 GKAIVQLEDGVQISSGDTLARI 1124 (1407)
T ss_dssp TTCCCCCCSSCEECTTCEEECC
T ss_pred CCcEEEecCCCEeccCceEEec
Confidence 4455789999999999999866
No 104
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=54.45 E-value=13 Score=36.13 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=30.3
Q ss_pred EecCeeeeEecCCCeEEE-------------------------------EEEcCCCCccCCCCeEEEEc
Q 023356 245 EAMKLMNEIEADQSGTIA-------------------------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 245 EamK~~~eI~Ap~sGvV~-------------------------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..-+...+|.|+.+|.|. .++++.||.|+.|++|++|.
T Consensus 330 ~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~ 398 (433)
T 1brw_A 330 PKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIH 398 (433)
T ss_dssp CCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEE
T ss_pred CCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEE
Confidence 345667778888888874 56788899999999999984
No 105
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=54.29 E-value=13 Score=36.13 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=28.3
Q ss_pred cCeeeeEecCCCeEEE-------------------------------EEEcCCCCccCCCCeEEEEc
Q 023356 247 MKLMNEIEADQSGTIA-------------------------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 247 mK~~~eI~Ap~sGvV~-------------------------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
-+...+|.|+.+|.|. .++++.||.|+.|++|++|.
T Consensus 335 a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 335 AQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 4566777777777776 46677899999999999984
No 106
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=53.95 E-value=14 Score=31.43 Aligned_cols=13 Identities=23% Similarity=0.122 Sum_probs=9.8
Q ss_pred CCccCCcCeEEEc
Q 023356 207 PPLKCPMAGTFYR 219 (283)
Q Consensus 207 ~~I~AP~vGtf~~ 219 (283)
..|+|+..|++..
T Consensus 49 tpV~A~~~G~V~~ 61 (182)
T 3it5_A 49 YSVVAAHAGTVRV 61 (182)
T ss_dssp CEEECSSSEEEEE
T ss_pred CEEEeccCEEEEE
Confidence 4688888888765
No 107
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=52.69 E-value=7.8 Score=33.06 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=18.7
Q ss_pred CccccCCCEEeCCceEEEEEe
Q 023356 226 PAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 226 ~~~V~vGd~V~~Gq~L~iIEa 246 (283)
...|++||.|++||+|+.+-.
T Consensus 84 ~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 84 QIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp SCCCCTTCEECTTCEEEEECS
T ss_pred ccccCCCCEEcCCCEEEeecC
Confidence 367999999999999999874
No 108
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=52.15 E-value=13 Score=36.06 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=29.7
Q ss_pred EecCeeeeEecCCCeEEE-------------------------------EEEcCCCCccCCCCeEEEEc
Q 023356 245 EAMKLMNEIEADQSGTIA-------------------------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 245 EamK~~~eI~Ap~sGvV~-------------------------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..-+ ..+|.|+.+|.|. .++++.||.|+.|++|++|.
T Consensus 323 ~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~ 390 (423)
T 2dsj_A 323 PLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVY 390 (423)
T ss_dssp CCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEE
Confidence 3345 7778888888885 56788899999999999984
No 109
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=49.80 E-value=2.7 Score=39.00 Aligned_cols=36 Identities=11% Similarity=-0.056 Sum_probs=26.0
Q ss_pred ccccCCCEEeCCceEEEEEec-----CeeeeEecCCCeEEE
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM-----KLMNEIEADQSGTIA 262 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam-----K~~~eI~Ap~sGvV~ 262 (283)
+.++.|+.|++||+|+.+-.. ....+|.+|.+|+|.
T Consensus 277 ~~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 277 DSVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TTCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred ecCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 467999999999999987554 345579999999873
No 110
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=49.73 E-value=24 Score=35.74 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=31.1
Q ss_pred cccCCCEEeCCceEEEEEecCe-eeeEec--CCCeEEEEEEcCCCC
Q 023356 228 FVKVGDKVQKGQVVCIIEAMKL-MNEIEA--DQSGTIAEILAEDGK 270 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK~-~~eI~A--p~sGvV~~Ilve~Gd 270 (283)
.+++||.|..||+++.+.-... .+.|.. ...|+|+.| .+|+
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~ 173 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGS 173 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCc
Confidence 4899999999999999865543 355533 368999888 5665
No 111
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=49.26 E-value=29 Score=29.64 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=37.6
Q ss_pred CccCCcCeEEEccCCCCCCccc--cCCCEEe--CCceEEEEEec-CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFV--KVGDKVQ--KGQVVCIIEAM-KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V--~vGd~V~--~Gq~L~iIEam-K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
.|.|+..|++... .. -.| ..|+.|- ..-.|.++... +-.....-|+.- .++|++|+.|..|+.|++..
T Consensus 10 ~i~a~~~G~V~f~-nl---~~v~~~~G~~vv~~r~g~i~I~d~~g~e~~~~~ipyGa---~L~V~dG~~V~~G~~laewD 82 (190)
T 2auk_A 10 SIQVKNKGSIKLS-NV---KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGA---VLAKGDGEQVAGGETVANWD 82 (190)
T ss_dssp EEECCSSEEEEEE-SC---CEEECTTSCEEECCSSCEEEEECTTSCEEEEEECCTTC---EESSCTTCEECTTCEEEECC
T ss_pred eEEcccCeEEEEc-cc---EEEECCCCCEEEEccccEEEEEcCCCcEEEEEEcCCCC---EEEecCCCEEcCCCEEEEEc
Confidence 5889999987542 11 111 2343331 12222333211 111123333333 57899999999999999866
Q ss_pred C
Q 023356 283 P 283 (283)
Q Consensus 283 p 283 (283)
|
T Consensus 83 p 83 (190)
T 2auk_A 83 P 83 (190)
T ss_dssp S
T ss_pred C
Confidence 4
No 112
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=47.32 E-value=3.6 Score=33.53 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=27.3
Q ss_pred eeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~pL~~Ie 282 (283)
.++..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 28 td~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vE 60 (131)
T 1hpc_A 28 TDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60 (131)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECBTSEEEEEE
T ss_pred ehhhcccCCCceEEEecCCCCEEeCCCEEEEEE
Confidence 4456677788989888 9999999999999986
No 113
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=46.93 E-value=4 Score=33.58 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.0
Q ss_pred eeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~pL~~Ie 282 (283)
.++.++.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 37 t~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VE 69 (136)
T 1zko_A 37 TNHAQEQLGDVVYVDLPEVGREVKKGEVVASIE 69 (136)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEE
T ss_pred EhhhcccCCCcEEEEecCCCCEEeCCCEEEEEE
Confidence 4456777788888877 9999999999999986
No 114
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=46.58 E-value=11 Score=36.57 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=30.7
Q ss_pred EEecCeeeeEecCCCeEEE-------------------------------EEEcCCCCccCCCCeEEEEc
Q 023356 244 IEAMKLMNEIEADQSGTIA-------------------------------EILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 244 IEamK~~~eI~Ap~sGvV~-------------------------------~Ilve~Gd~V~~G~pL~~Ie 282 (283)
+..-+...+|.|+.+|.|. .++++.||.|+.|++|++|.
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~ 403 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIH 403 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEE
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEe
Confidence 3445677788888888885 45678899999999999984
No 115
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=45.91 E-value=15 Score=31.53 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=31.1
Q ss_pred CCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 232 GDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 232 Gd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
|-.+++|+.||.+++. |..+-+.+..|+.|..|+.|+.|.
T Consensus 93 ~~~lkkGt~L~lvpae-----------G~~V~~i~~~G~rV~kgd~lA~i~ 132 (169)
T 3d4r_A 93 LTYLKAGTKLISVPAE-----------GYKVYPIMDFGFRVLKGYRLATLE 132 (169)
T ss_dssp EEEECTTCBCEEEEEC-----------SSEEEECCCCSEEECTTCEEEEEE
T ss_pred EEEEcCCCEEEEEEeC-----------ceEEEEEcCcCcEeccCCeEEEEE
Confidence 3347788888888765 555567778999999999999874
No 116
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=43.09 E-value=19 Score=32.75 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=27.3
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023356 250 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 282 (283)
Q Consensus 250 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~Ie 282 (283)
..-++|+..|.+. ..++.|+.|+.|++|+.|.
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~ 288 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLH 288 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTCEECTTCEEEEEE
T ss_pred ceEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEE
Confidence 3457899999775 8899999999999999874
No 117
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=42.77 E-value=5.1 Score=32.47 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=26.5
Q ss_pred eeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~pL~~Ie 282 (283)
.+...+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 28 t~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vE 60 (128)
T 1onl_A 28 TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVE 60 (128)
T ss_dssp CHHHHHHHCSEEEEECBCTTCEECTTCEEEEEE
T ss_pred ehHHhhcCCCceEEEecCCCCEEeCCCEEEEEE
Confidence 4455666788888877 9999999999999986
No 118
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=41.25 E-value=13 Score=36.10 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.9
Q ss_pred ccccCCCEEeCCceEEEEEecC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK 248 (283)
.++++||.|++||+|+.|=+.+
T Consensus 385 ~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 385 DMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp SCCCTTCEEBTTBCSEEEEESS
T ss_pred EeccCCCEECCCCeEEEEecCC
Confidence 7899999999999999997764
No 119
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=40.97 E-value=32 Score=30.71 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=13.0
Q ss_pred EEEcCCCCccCCCCeEEEE
Q 023356 263 EILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 263 ~Ilve~Gd~V~~G~pL~~I 281 (283)
++.|+.|+.|..|+.|.++
T Consensus 134 ~i~Vk~Gd~V~~Gq~IG~v 152 (245)
T 3tuf_B 134 EVSVEQGDKVKQNQVIGKS 152 (245)
T ss_dssp EESCCTTCEECTTCEEEEC
T ss_pred ccccCCCCEECCCCEEEEe
Confidence 4667777777777777654
No 120
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=40.73 E-value=12 Score=34.62 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.3
Q ss_pred CccccCCCEEeCCceEEEEEe
Q 023356 226 PAFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 226 ~~~V~vGd~V~~Gq~L~iIEa 246 (283)
...|++||.|++||+|+.+-.
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 467999999999999998754
No 121
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=39.55 E-value=12 Score=33.57 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=18.8
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
..|++||.|++||+|+.+-..
T Consensus 135 i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 135 VSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp ESCCTTCEECTTCEEEECBCC
T ss_pred cccCCCCEECCCCEEEEeCCc
Confidence 679999999999999998754
No 122
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=38.38 E-value=13 Score=33.21 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=17.5
Q ss_pred cccCCCEEeCCceEEEEEe
Q 023356 228 FVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEa 246 (283)
.|++||.|++||+|+.+-.
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SCCTTCEECTTCEEEECBC
T ss_pred cCCCCCEECCCCEEEEECC
Confidence 7999999999999999864
No 123
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=36.66 E-value=24 Score=34.22 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=17.8
Q ss_pred ccccCCCEEeCCceEEEEE
Q 023356 227 AFVKVGDKVQKGQVVCIIE 245 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIE 245 (283)
.++++||.|++||+|+.|=
T Consensus 383 l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 383 LNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp ESCCTTCEECTTSEEEEEE
T ss_pred EecCCcCEeCCCCeEEEEe
Confidence 6899999999999999886
No 124
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=35.79 E-value=15 Score=34.02 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.9
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
..|++||.|++||+|+.+-.
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~ 258 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGS 258 (291)
T ss_dssp ECCCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 57999999999999998854
No 125
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=35.69 E-value=31 Score=33.33 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=19.8
Q ss_pred ccccCCCEEeCCceEEEEEecC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK 248 (283)
.++++||.|++||+|+.|=+.+
T Consensus 380 ~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 380 LHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp ESCCTTCEECTTCEEEEEEESS
T ss_pred EeccCCCEECCCCeEEEEEcCC
Confidence 7899999999999999997754
No 126
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=35.52 E-value=32 Score=33.26 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.8
Q ss_pred ccccCCCEEeCCceEEEEEecC
Q 023356 227 AFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEamK 248 (283)
.++++||.|++||+|+.|=+..
T Consensus 372 ~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 372 LLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp ESCCTTCEECTTSEEEEEEECS
T ss_pred eeccCCCEeCCCCeEEEEEeCC
Confidence 7899999999999999997753
No 127
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=34.81 E-value=16 Score=33.30 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=17.9
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
..|++||.|++||+|+.+-.
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~ 251 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGA 251 (282)
T ss_dssp ECSCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 57999999999999998764
No 128
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=33.97 E-value=24 Score=28.44 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=26.4
Q ss_pred eeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023356 251 NEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 282 (283)
Q Consensus 251 ~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~pL~~Ie 282 (283)
.+...+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 29 td~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vE 61 (128)
T 3a7l_A 29 TEHAQELLGDMVFVDLPEVGATVSAGDDCAVAE 61 (128)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEE
T ss_pred ehHHhccCCceEEEEecCCCCEEeCCCEEEEEE
Confidence 4455666688888877 9999999999999986
No 129
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=33.04 E-value=37 Score=33.30 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.2
Q ss_pred CccccCCCEEeCCceEEEEEecC
Q 023356 226 PAFVKVGDKVQKGQVVCIIEAMK 248 (283)
Q Consensus 226 ~~~V~vGd~V~~Gq~L~iIEamK 248 (283)
..++++||.|++||+|+.|=+.+
T Consensus 414 ~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 414 ELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp EECSCTTCEECTTCEEEEEEESS
T ss_pred EEEccCCCEECCCCeEEEEEcCC
Confidence 37899999999999999997753
No 130
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=32.91 E-value=40 Score=30.65 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=37.4
Q ss_pred CCccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 207 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 207 ~~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
..|+|+..|++... |+.-.-|.. .+|+-..-..-+.+.. .++.|+.||.|..||.|..+
T Consensus 191 tpV~A~~~G~V~~~-----------g~~~~~G~~-ViI~Hg~G~~t~Y~HL----~~i~V~~G~~V~~Gq~IG~v 249 (282)
T 2hsi_A 191 TPIKAPAAGKVILI-----------GDYFFNGKT-VFVDHGQGFISMFCHL----SKIDVKLGQQVPRGGVLGKV 249 (282)
T ss_dssp CEEECSSCEEEEEE-----------EEETTTEEE-EEEEEETTEEEEEEEE----SEECSCTTCEECTTCEEEEC
T ss_pred CeEEeccCeEEEEE-----------EEcCCCCCE-EEEEeCCcEEEEEECC----CccccCCcCEECCCCEEEEE
Confidence 46888899988752 111012332 3455544444444443 36789999999999999875
No 131
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=32.76 E-value=23 Score=32.30 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=18.9
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
|+++.|+.|++||+|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 75 FNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp ESCCTTCEEESCEEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEE
Confidence 79999999999999999986
No 132
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=31.72 E-value=25 Score=32.10 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.9
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
|+++.|+.|++||+|+.|+.
T Consensus 76 ~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 76 PLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCccCCCEEEEEEE
Confidence 78999999999999999986
No 133
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=30.75 E-value=25 Score=31.99 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.9
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
|+++.|+.|++|++|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 75 DRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCcEEEEEEE
Confidence 78999999999999999986
No 134
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=30.60 E-value=20 Score=33.28 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.3
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
..|++||.|++||+|+.+-..
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~t 304 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGAT 304 (361)
T ss_dssp ECCCTTCEECTTCEEEECCCC
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 569999999999999988643
No 135
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=29.97 E-value=54 Score=29.24 Aligned_cols=58 Identities=19% Similarity=0.005 Sum_probs=36.9
Q ss_pred CccCCcCeEEEccCCCCCCccccCCCEEeCCceEEEEEecCeeeeEecCCCeEEEEE-EcCCCCccCCCCeEEEE
Q 023356 208 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEI-LAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 208 ~I~AP~vGtf~~~p~~~~~~~V~vGd~V~~Gq~L~iIEamK~~~eI~Ap~sGvV~~I-lve~Gd~V~~G~pL~~I 281 (283)
.|.|+..|++...- + . ..+--..+|+...-..-+.+.. .++ .|+.||.|..||.|..+
T Consensus 141 pV~A~~~G~V~~~g-----~--~-----~~~G~~V~I~H~~G~~t~Y~HL----~~~~~V~~G~~V~~Gq~IG~v 199 (252)
T 3nyy_A 141 PVVSMTDGVVTEKG-----W--L-----EKGGWRIGITAPTGAYFYYAHL----DSYAELEKGDPVKAGDLLGYM 199 (252)
T ss_dssp EEECSSCEEEEEEE-----E--E-----TTTEEEEEEECTTSCEEEEEEE----SEECSCCTTCEECTTCEEEEC
T ss_pred eEEeccCEEEEEEE-----e--c-----CCCCCEEEEEeCCcEEEEEeeC----CCCCcCCCCCEECCCCEEEEE
Confidence 69999999987621 1 0 0112234555544444455443 344 89999999999999876
No 136
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=29.02 E-value=29 Score=31.85 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=19.4
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|++|++|+.|+..
T Consensus 79 ~~~~dG~~v~~g~~v~~i~G~ 99 (287)
T 3tqv_A 79 WLYSDAQKVPANARIFELKGN 99 (287)
T ss_dssp ESSCTTCEECTTCEEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEEc
Confidence 899999999999999999863
No 137
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=28.22 E-value=31 Score=31.99 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=19.4
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|+++.|+.|++|++|+.|+..
T Consensus 88 ~~~~dG~~v~~g~~v~~i~G~ 108 (300)
T 3l0g_A 88 IHKKDGDITGKNSTLVSGEAL 108 (300)
T ss_dssp ECCCTTCEECSSCEEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEEC
Confidence 899999999999999999863
No 138
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=26.77 E-value=85 Score=31.62 Aligned_cols=37 Identities=30% Similarity=0.545 Sum_probs=28.3
Q ss_pred cccCCCEEeCCceEEEEEecCeeeeE--ecCCCeEEEEE
Q 023356 228 FVKVGDKVQKGQVVCIIEAMKLMNEI--EADQSGTIAEI 264 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK~~~eI--~Ap~sGvV~~I 264 (283)
.+++||.|..||+++.+.--...+.| .....|+|+++
T Consensus 122 ~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i 160 (578)
T 3gqb_A 122 MVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV 160 (578)
T ss_dssp CCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEE
T ss_pred ccccCccccccceeeeecccccceecccCCCcCceeEEe
Confidence 58999999999999998655444554 33467888776
No 139
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=26.27 E-value=1.4e+02 Score=22.04 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=41.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEec
Q 023356 102 KKIPDASAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKK 146 (283)
Q Consensus 102 ~~~~~~~~i~~~i~eI~eLikl~d~s~i~ELeLk~~d~~L~Irk~ 146 (283)
+.+++.+.-++++..|+.+++--+-=+|.|-++...|--|.|+..
T Consensus 25 P~gLt~~Q~~QW~~TIeav~qSakyWNlaEC~~~~s~~~~ilk~r 69 (75)
T 2fqm_A 25 PEGLSGEQKSQWMLTIKAVVQSAKHWNLAECTFEASGEGVIIKKR 69 (75)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHSCGGGSEEEECSSEEEEEEC
T ss_pred CCCccHHHHHHHHHHHHHHHhhhcccchhheEEEecCCcEEEecc
Confidence 778899999999999999999999999999999999999999864
No 140
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=26.00 E-value=20 Score=27.10 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=15.2
Q ss_pred CCCCccccCCCEEeCCceEE
Q 023356 223 PGEPAFVKVGDKVQKGQVVC 242 (283)
Q Consensus 223 ~~~~~~V~vGd~V~~Gq~L~ 242 (283)
.+....|+.||.|++||.|.
T Consensus 63 ~~~~l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 63 KWRQLNVFEGERVERGDVIS 82 (84)
T ss_dssp TTSCCSSCTTEEECBSCSSB
T ss_pred CCCceEeCCCCEECCCCCcc
Confidence 44557799999999998653
No 141
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=24.91 E-value=40 Score=31.08 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.4
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|++++|+.|.+|++|+.|+..
T Consensus 90 ~~~~dG~~v~~g~~l~~v~G~ 110 (298)
T 3gnn_A 90 WRHREGDRMSADSTVCELRGP 110 (298)
T ss_dssp ESSCTTCEECTTCEEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEec
Confidence 899999999999999999863
No 142
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=24.38 E-value=41 Score=30.15 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=18.8
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
|++++|+.|..|++|+.|+.
T Consensus 62 ~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 62 QTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEe
Confidence 68999999999999999986
No 143
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=23.88 E-value=43 Score=31.22 Aligned_cols=21 Identities=24% Similarity=0.437 Sum_probs=19.4
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|++++|+.|.+|++|+.|+..
T Consensus 112 ~~~~dG~~v~~g~~l~~v~G~ 132 (320)
T 3paj_A 112 WHVQDGDTLTPNQTLCTLTGP 132 (320)
T ss_dssp ESSCTTCEECTTCEEEEEEEE
T ss_pred EEeCCCCEecCCCEEEEEEec
Confidence 899999999999999999863
No 144
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=23.49 E-value=44 Score=30.49 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=19.4
Q ss_pred ccccCCCEEeCCceEEEEEec
Q 023356 227 AFVKVGDKVQKGQVVCIIEAM 247 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEam 247 (283)
|++++|+.|..|++|+.|+..
T Consensus 89 ~~~~dG~~v~~g~~~~~v~G~ 109 (296)
T 1qap_A 89 WHVDDGDAIHANQTVFELQGP 109 (296)
T ss_dssp ESCCTTCEECTTCEEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEEc
Confidence 799999999999999999873
No 145
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=23.03 E-value=1.2e+02 Score=28.09 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=23.9
Q ss_pred EEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023356 243 IIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 243 iIEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~pL~~I 281 (283)
+|+-..-...+.+. +.++.|+.||.|..||.|..+
T Consensus 267 ~i~h~~g~~t~Y~h----l~~~~v~~G~~V~~G~~Ig~~ 301 (361)
T 2gu1_A 267 VIEHNSVYKTRYLH----LDKILVKKGQLVKRGQKIALA 301 (361)
T ss_dssp EEECSSSEEEEEEE----ESEECCCTTCEECTTCEEEEC
T ss_pred EEEECCCEEEEEeC----cCccccCCcCEECCCCEEEEE
Confidence 44444434444443 335789999999999999876
No 146
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Escherichia coli}
Probab=22.30 E-value=47 Score=28.31 Aligned_cols=42 Identities=33% Similarity=0.439 Sum_probs=34.5
Q ss_pred ccCCCEEeCCceEEEEEecC---eeeeEecCCCeEEEEEEcCCCCc
Q 023356 229 VKVGDKVQKGQVVCIIEAMK---LMNEIEADQSGTIAEILAEDGKS 271 (283)
Q Consensus 229 V~vGd~V~~Gq~L~iIEamK---~~~eI~Ap~sGvV~~Ilve~Gd~ 271 (283)
++.|-+-..|+++-++|+|| +.++|.- ..|+|.+|.|.+++.
T Consensus 45 lrsGm~t~~G~~v~~~qA~~~d~v~lvi~G-~~g~V~rI~V~d~~i 89 (166)
T 2qzb_A 45 LRSGMKTANGNVVRFFEVMKGDNVAMVING-DQGTISRIDVLDSDI 89 (166)
T ss_dssp EEEEEEEETTEEEEEEEEEETTEEEEEEEC---CBCCEEEECCTTC
T ss_pred EeeceecCCCCEEEeeeeecCCcEEEEEEC-CCCcEEEEEEeCCCC
Confidence 67888999999999999975 6677777 889999999998875
No 147
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=22.30 E-value=93 Score=28.59 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=17.7
Q ss_pred EEEEcCCCCccCCCCeEEEE
Q 023356 262 AEILAEDGKSVSVDTPLLVI 281 (283)
Q Consensus 262 ~~Ilve~Gd~V~~G~pL~~I 281 (283)
.++.|+.||.|..|++|..+
T Consensus 237 s~i~Vk~Gq~V~~GqvIG~v 256 (291)
T 1qwy_A 237 NRLTVSAGDKVKAGDQIAYS 256 (291)
T ss_dssp SEECCCTTCEECTTCEEEEC
T ss_pred CccccCCcCEECCCCEEEEE
Confidence 35789999999999999876
No 148
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=21.66 E-value=1e+02 Score=31.05 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=26.9
Q ss_pred cccCCCEEeCCceEEEEEecC-eeeeEe--cCCCeEEEEE
Q 023356 228 FVKVGDKVQKGQVVCIIEAMK-LMNEIE--ADQSGTIAEI 264 (283)
Q Consensus 228 ~V~vGd~V~~Gq~L~iIEamK-~~~eI~--Ap~sGvV~~I 264 (283)
.+++||.|..|++++.+.-.. ..+.|. ....|+|++|
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i 162 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI 162 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe
Confidence 589999999999999886543 334443 3367887776
No 149
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=21.33 E-value=48 Score=30.18 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=18.8
Q ss_pred ccccCCCEEeCCceEEEEEe
Q 023356 227 AFVKVGDKVQKGQVVCIIEA 246 (283)
Q Consensus 227 ~~V~vGd~V~~Gq~L~iIEa 246 (283)
|++++|+.|..|++|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 75 WFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp ESSCTTCEECSSEEEEEEEE
T ss_pred EEcCCCCCCCCCCEEEEEEE
Confidence 68999999999999999986
Done!