Query 023357
Match_columns 283
No_of_seqs 294 out of 1635
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1719 Dual specificity phosp 100.0 9.9E-40 2.1E-44 264.0 15.8 173 35-209 1-174 (183)
2 smart00195 DSPc Dual specifici 100.0 3.5E-31 7.5E-36 215.9 16.4 137 62-204 2-138 (138)
3 KOG1718 Dual specificity phosp 100.0 3.9E-31 8.5E-36 217.0 15.4 167 59-236 15-181 (198)
4 PRK12361 hypothetical protein; 100.0 2E-31 4.3E-36 263.0 16.1 171 32-206 63-238 (547)
5 cd00127 DSPc Dual specificity 100.0 2.1E-29 4.5E-34 204.9 15.0 138 61-202 2-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 4.6E-29 9.9E-34 201.9 11.6 133 68-204 1-133 (133)
7 KOG1717 Dual specificity phosp 99.9 4E-27 8.7E-32 205.8 13.9 143 60-206 171-313 (343)
8 KOG1716 Dual specificity phosp 99.9 6E-26 1.3E-30 207.0 16.3 147 59-209 73-220 (285)
9 PTZ00242 protein tyrosine phos 99.9 7.5E-25 1.6E-29 184.7 17.0 143 59-206 9-159 (166)
10 PTZ00393 protein tyrosine phos 99.9 5E-24 1.1E-28 186.7 16.5 133 68-206 94-230 (241)
11 KOG1720 Protein tyrosine phosp 99.9 9.2E-22 2E-26 167.3 14.0 119 80-203 88-206 (225)
12 PF05706 CDKN3: Cyclin-depende 99.9 1.4E-22 2.9E-27 168.3 4.3 156 1-178 7-168 (168)
13 PF03162 Y_phosphatase2: Tyros 99.8 1.7E-18 3.6E-23 145.7 7.2 143 60-206 6-151 (164)
14 COG2453 CDC14 Predicted protei 99.7 1E-16 2.2E-21 137.0 13.3 101 105-206 67-168 (180)
15 KOG2836 Protein tyrosine phosp 99.7 2.5E-15 5.4E-20 119.6 12.7 122 78-205 33-156 (173)
16 TIGR01244 conserved hypothetic 99.6 6.1E-15 1.3E-19 120.3 12.6 119 62-187 3-127 (135)
17 smart00012 PTPc_DSPc Protein t 99.5 3.7E-13 8E-18 103.2 10.7 88 115-202 7-103 (105)
18 smart00404 PTPc_motif Protein 99.5 3.7E-13 8E-18 103.2 10.7 88 115-202 7-103 (105)
19 PF04273 DUF442: Putative phos 99.5 1.8E-13 3.8E-18 107.6 7.7 98 62-165 3-106 (110)
20 PLN02727 NAD kinase 99.4 1.7E-12 3.7E-17 131.4 11.1 104 67-173 262-370 (986)
21 cd00047 PTPc Protein tyrosine 99.4 3.9E-12 8.5E-17 112.2 10.8 94 109-202 128-229 (231)
22 PRK15375 pathogenicity island 99.3 1.2E-11 2.6E-16 118.6 12.0 96 111-206 423-530 (535)
23 smart00194 PTPc Protein tyrosi 99.3 1.2E-11 2.6E-16 111.0 11.3 91 111-201 158-255 (258)
24 PHA02740 protein tyrosine phos 99.3 4E-11 8.8E-16 110.1 12.1 98 109-206 176-288 (298)
25 PHA02742 protein tyrosine phos 99.2 7.7E-11 1.7E-15 108.6 12.1 96 111-206 183-296 (303)
26 COG3453 Uncharacterized protei 99.2 1.9E-10 4.1E-15 90.1 11.3 115 62-183 4-124 (130)
27 KOG1572 Predicted protein tyro 99.2 1.9E-10 4.2E-15 100.1 12.6 122 61-185 60-188 (249)
28 PHA02738 hypothetical protein; 99.2 1.1E-10 2.4E-15 108.3 11.4 98 110-207 178-295 (320)
29 PHA02746 protein tyrosine phos 99.2 1.7E-10 3.7E-15 107.2 11.8 97 110-206 201-314 (323)
30 PHA02747 protein tyrosine phos 99.2 2.2E-10 4.7E-15 106.0 11.9 96 111-206 184-299 (312)
31 KOG2386 mRNA capping enzyme, g 99.1 1.1E-10 2.4E-15 109.3 7.8 156 65-221 38-201 (393)
32 KOG2283 Clathrin coat dissocia 99.1 4.8E-10 1E-14 107.2 9.8 139 62-206 16-175 (434)
33 PF13350 Y_phosphatase3: Tyros 99.1 2.9E-10 6.2E-15 95.5 6.5 115 64-180 16-159 (164)
34 PF00102 Y_phosphatase: Protei 99.0 1.9E-09 4.1E-14 94.4 11.2 93 111-203 135-234 (235)
35 KOG0792 Protein tyrosine phosp 99.0 1.9E-09 4.1E-14 109.9 10.5 96 111-206 1028-1130(1144)
36 KOG0790 Protein tyrosine phosp 98.9 3.1E-09 6.8E-14 99.7 8.0 128 78-205 372-520 (600)
37 COG5599 PTP2 Protein tyrosine 98.9 2E-09 4.4E-14 95.2 6.4 93 110-206 184-294 (302)
38 COG5350 Predicted protein tyro 98.7 1.2E-07 2.6E-12 77.5 9.4 116 80-196 26-146 (172)
39 COG2365 Protein tyrosine/serin 98.7 8.4E-08 1.8E-12 86.1 8.5 124 64-192 51-184 (249)
40 KOG0791 Protein tyrosine phosp 98.6 1.9E-07 4.1E-12 86.2 10.3 94 118-211 260-359 (374)
41 PF14566 PTPlike_phytase: Inos 98.6 5.8E-08 1.3E-12 80.5 6.3 64 103-168 85-148 (149)
42 KOG0789 Protein tyrosine phosp 98.5 9.7E-07 2.1E-11 84.2 10.1 96 112-207 265-368 (415)
43 KOG4228 Protein tyrosine phosp 98.3 1.3E-06 2.8E-11 90.2 7.0 63 144-206 1018-1085(1087)
44 KOG0793 Protein tyrosine phosp 98.1 6.6E-06 1.4E-10 81.3 8.1 86 119-204 901-993 (1004)
45 KOG4228 Protein tyrosine phosp 98.1 3E-06 6.4E-11 87.7 5.3 91 112-205 696-796 (1087)
46 PF04179 Init_tRNA_PT: Initiat 97.8 0.00041 8.8E-09 67.2 13.5 135 63-201 291-449 (451)
47 PF14671 DSPn: Dual specificit 96.4 0.0086 1.9E-07 49.1 6.0 69 119-188 39-114 (141)
48 KOG4471 Phosphatidylinositol 3 93.3 0.13 2.9E-06 50.9 5.2 33 133-165 363-395 (717)
49 PLN02160 thiosulfate sulfurtra 91.2 0.36 7.9E-06 39.1 4.6 29 141-172 78-106 (136)
50 COG0607 PspE Rhodanese-related 88.0 1.5 3.2E-05 33.1 5.6 65 83-167 16-82 (110)
51 PF06602 Myotub-related: Myotu 87.8 1.2 2.6E-05 42.0 5.9 25 142-166 229-253 (353)
52 KOG1089 Myotubularin-related p 86.2 1.2 2.7E-05 44.2 5.2 33 132-164 331-364 (573)
53 cd01518 RHOD_YceA Member of th 86.1 3.8 8.2E-05 30.7 6.9 28 142-172 59-86 (101)
54 cd01448 TST_Repeat_1 Thiosulfa 82.2 6.1 0.00013 30.6 6.7 29 142-172 77-105 (122)
55 PRK01415 hypothetical protein; 81.0 2.4 5.2E-05 38.1 4.4 28 142-172 169-196 (247)
56 cd01523 RHOD_Lact_B Member of 80.7 7 0.00015 29.1 6.4 28 142-172 59-86 (100)
57 PRK00142 putative rhodanese-re 76.7 6.9 0.00015 36.3 6.2 27 143-172 170-196 (314)
58 COG1054 Predicted sulfurtransf 70.8 11 0.00023 34.8 5.8 91 64-172 105-197 (308)
59 cd01533 4RHOD_Repeat_2 Member 69.4 13 0.00029 28.2 5.3 27 143-172 65-91 (109)
60 PF00581 Rhodanese: Rhodanese- 68.9 29 0.00064 25.7 7.2 73 84-164 10-86 (113)
61 PF02571 CbiJ: Precorrin-6x re 64.3 7.9 0.00017 34.7 3.6 85 67-155 46-139 (249)
62 cd01520 RHOD_YbbB Member of th 63.2 19 0.0004 28.4 5.2 30 141-172 83-112 (128)
63 PF04343 DUF488: Protein of un 61.2 42 0.00091 26.2 6.9 40 80-119 7-53 (122)
64 TIGR03865 PQQ_CXXCW PQQ-depend 60.5 19 0.00041 29.9 5.0 29 142-172 114-142 (162)
65 PRK05320 rhodanese superfamily 57.3 22 0.00047 32.0 5.1 27 143-172 174-200 (257)
66 cd01522 RHOD_1 Member of the R 56.0 22 0.00047 27.6 4.4 21 141-162 61-81 (117)
67 PRK08057 cobalt-precorrin-6x r 55.7 9.3 0.0002 34.3 2.5 83 67-155 45-136 (248)
68 PRK05600 thiamine biosynthesis 55.3 11 0.00024 35.8 3.1 25 145-172 333-357 (370)
69 cd01528 RHOD_2 Member of the R 52.0 28 0.0006 25.9 4.3 27 143-172 57-83 (101)
70 PF13292 DXP_synthase_N: 1-deo 51.7 20 0.00044 32.5 3.9 41 104-152 229-269 (270)
71 PRK05569 flavodoxin; Provision 49.7 1.3E+02 0.0027 23.7 8.6 92 108-206 48-140 (141)
72 PF03861 ANTAR: ANTAR domain; 47.2 24 0.00051 23.8 2.9 25 160-184 16-40 (56)
73 PF15040 Humanin: Humanin fami 44.7 7.3 0.00016 21.6 0.0 11 253-263 2-12 (24)
74 COG1154 Dxs Deoxyxylulose-5-ph 44.4 34 0.00074 34.6 4.6 48 101-156 234-281 (627)
75 PRK09875 putative hydrolase; P 44.3 1.3E+02 0.0029 27.5 8.3 19 78-96 39-57 (292)
76 cd01519 RHOD_HSP67B2 Member of 43.8 31 0.00068 25.6 3.5 27 143-172 65-91 (106)
77 cd01532 4RHOD_Repeat_1 Member 43.4 38 0.00083 24.7 3.8 29 143-172 49-77 (92)
78 cd03174 DRE_TIM_metallolyase D 42.4 2.3E+02 0.0051 24.7 12.6 117 79-198 121-259 (265)
79 PF02673 BacA: Bacitracin resi 42.0 30 0.00065 31.2 3.5 27 152-180 159-185 (259)
80 cd01534 4RHOD_Repeat_3 Member 42.0 32 0.0007 25.2 3.2 26 144-172 56-81 (95)
81 PRK10886 DnaA initiator-associ 41.9 62 0.0014 27.9 5.4 37 128-167 25-61 (196)
82 COG0794 GutQ Predicted sugar p 41.6 57 0.0012 28.4 5.0 36 128-169 26-61 (202)
83 PF03668 ATP_bind_2: P-loop AT 40.2 50 0.0011 30.3 4.7 18 146-163 244-261 (284)
84 TIGR00204 dxs 1-deoxy-D-xylulo 39.8 45 0.00098 33.9 4.8 46 104-157 232-277 (617)
85 PF01904 DUF72: Protein of unk 39.3 2.6E+02 0.0057 24.4 9.7 75 79-153 135-213 (230)
86 cd01447 Polysulfide_ST Polysul 38.9 37 0.0008 24.9 3.1 29 141-172 58-86 (103)
87 smart00400 ZnF_CHCC zinc finge 37.7 37 0.00081 22.6 2.7 32 148-181 23-54 (55)
88 PF10302 DUF2407: DUF2407 ubiq 37.7 19 0.00041 27.5 1.3 11 144-154 85-95 (97)
89 cd01529 4RHOD_Repeats Member o 37.5 40 0.00088 24.7 3.1 28 142-172 54-81 (96)
90 cd01530 Cdc25 Cdc25 phosphatas 37.4 38 0.00082 26.5 3.1 25 142-168 66-91 (121)
91 cd01527 RHOD_YgaP Member of th 37.1 44 0.00094 24.6 3.3 25 141-167 51-75 (99)
92 cd01531 Acr2p Eukaryotic arsen 37.1 77 0.0017 24.0 4.8 22 142-163 60-81 (113)
93 KOG1530 Rhodanese-related sulf 36.9 70 0.0015 26.0 4.5 75 79-163 30-107 (136)
94 cd01444 GlpE_ST GlpE sulfurtra 36.8 83 0.0018 22.6 4.8 29 141-172 53-81 (96)
95 TIGR00715 precor6x_red precorr 36.7 25 0.00054 31.6 2.2 82 68-149 47-134 (256)
96 PRK10287 thiosulfate:cyanide s 36.7 71 0.0015 24.4 4.4 19 143-162 59-77 (104)
97 PRK12554 undecaprenyl pyrophos 36.2 36 0.00079 31.0 3.2 26 153-180 166-191 (276)
98 cd01526 RHOD_ThiF Member of th 36.2 42 0.0009 26.0 3.2 28 142-172 70-97 (122)
99 TIGR00753 undec_PP_bacA undeca 35.9 38 0.00082 30.6 3.2 26 153-180 160-185 (255)
100 PRK13938 phosphoheptose isomer 34.9 95 0.0021 26.7 5.4 41 125-168 26-66 (196)
101 COG1660 Predicted P-loop-conta 34.8 63 0.0014 29.5 4.3 18 146-163 245-262 (286)
102 PRK00281 undecaprenyl pyrophos 34.4 42 0.00091 30.5 3.3 26 153-180 164-189 (268)
103 PRK05416 glmZ(sRNA)-inactivati 34.3 67 0.0015 29.4 4.6 18 146-163 247-264 (288)
104 cd01525 RHOD_Kc Member of the 34.1 58 0.0013 24.1 3.6 26 144-172 65-90 (105)
105 cd01443 Cdc25_Acr2p Cdc25 enzy 34.0 88 0.0019 23.7 4.7 19 144-162 66-84 (113)
106 TIGR00853 pts-lac PTS system, 32.6 40 0.00086 25.4 2.4 18 144-162 3-20 (95)
107 PF13580 SIS_2: SIS domain; PD 32.4 1.2E+02 0.0026 24.1 5.4 35 127-164 18-52 (138)
108 COG0279 GmhA Phosphoheptose is 32.2 70 0.0015 27.1 3.9 31 127-160 24-54 (176)
109 PRK11493 sseA 3-mercaptopyruva 31.8 37 0.0008 30.7 2.5 28 142-172 229-256 (281)
110 TIGR02981 phageshock_pspE phag 30.9 58 0.0013 24.7 3.1 27 143-172 57-83 (101)
111 PRK00414 gmhA phosphoheptose i 30.5 1.1E+02 0.0023 26.1 5.0 33 127-162 27-59 (192)
112 PLN02225 1-deoxy-D-xylulose-5- 30.0 79 0.0017 32.8 4.7 46 104-157 320-367 (701)
113 cd01521 RHOD_PspE2 Member of t 30.0 75 0.0016 24.0 3.6 30 141-172 61-91 (110)
114 TIGR03167 tRNA_sel_U_synt tRNA 29.3 1.2E+02 0.0026 28.1 5.4 28 143-172 73-100 (311)
115 cd05567 PTS_IIB_mannitol PTS_I 29.1 58 0.0013 23.8 2.7 21 145-166 1-21 (87)
116 cd01449 TST_Repeat_2 Thiosulfa 29.1 57 0.0012 24.7 2.8 28 142-172 76-103 (118)
117 PF04364 DNA_pol3_chi: DNA pol 28.8 86 0.0019 25.2 3.9 24 130-153 15-38 (137)
118 PRK11784 tRNA 2-selenouridine 26.8 1.5E+02 0.0031 28.0 5.6 28 143-172 87-114 (345)
119 PF11848 DUF3368: Domain of un 26.6 1.4E+02 0.0029 19.4 3.9 40 158-199 3-44 (48)
120 TIGR03573 WbuX N-acetyl sugar 25.9 1.1E+02 0.0024 28.6 4.7 32 151-183 283-314 (343)
121 PRK00162 glpE thiosulfate sulf 25.9 1.8E+02 0.0039 21.6 5.1 28 142-172 56-83 (108)
122 PF01807 zf-CHC2: CHC2 zinc fi 25.5 73 0.0016 24.0 2.8 36 148-185 54-89 (97)
123 PF01964 ThiC: ThiC family; I 25.4 2.5E+02 0.0054 27.2 6.8 117 83-199 86-239 (420)
124 PF12554 MOZART1: Mitotic-spin 25.2 2E+02 0.0044 19.0 4.4 31 154-185 18-48 (48)
125 cd07212 Pat_PNPLA9 Patatin-lik 25.1 1.7E+02 0.0038 26.9 5.7 50 133-187 17-68 (312)
126 PF09707 Cas_Cas2CT1978: CRISP 24.8 37 0.00081 25.4 1.0 19 58-76 18-36 (86)
127 PF14532 Sigma54_activ_2: Sigm 24.1 1.8E+02 0.0038 22.9 5.0 75 128-204 5-95 (138)
128 COG2927 HolC DNA polymerase II 23.9 74 0.0016 26.2 2.6 22 132-153 17-38 (144)
129 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.4 5.4E+02 0.012 23.1 14.2 122 80-205 125-268 (275)
130 PRK05728 DNA polymerase III su 23.2 1E+02 0.0022 24.9 3.4 26 129-154 14-39 (142)
131 TIGR00190 thiC thiamine biosyn 23.1 3.4E+02 0.0073 26.3 7.2 70 131-200 140-241 (423)
132 PRK07411 hypothetical protein; 22.6 95 0.0021 29.6 3.6 27 143-172 341-367 (390)
133 COG3707 AmiR Response regulato 22.4 86 0.0019 27.1 2.9 22 163-184 151-172 (194)
134 PRK13352 thiamine biosynthesis 22.3 3.4E+02 0.0074 26.4 7.1 69 131-199 143-243 (431)
135 smart00450 RHOD Rhodanese Homo 22.3 1.4E+02 0.003 21.0 3.7 28 142-172 54-81 (100)
136 cd07944 DRE_TIM_HOA_like 4-hyd 21.5 5.9E+02 0.013 22.8 12.6 111 79-194 115-247 (266)
137 PRK14071 6-phosphofructokinase 21.5 4.9E+02 0.011 24.6 8.1 84 79-163 100-193 (360)
138 cd05006 SIS_GmhA Phosphoheptos 21.3 1.7E+02 0.0037 24.1 4.5 34 126-162 15-48 (177)
139 TIGR00640 acid_CoA_mut_C methy 21.0 86 0.0019 25.1 2.5 30 66-95 85-114 (132)
140 KOG1004 Exosomal 3'-5' exoribo 20.9 1.9E+02 0.0042 25.4 4.7 39 143-183 184-222 (230)
141 PRK05772 translation initiatio 20.6 2.1E+02 0.0045 27.3 5.3 16 140-155 163-178 (363)
142 cd01317 DHOase_IIa Dihydroorot 20.4 5.2E+02 0.011 24.1 8.1 35 63-97 16-56 (374)
143 PLN02723 3-mercaptopyruvate su 20.3 1.2E+02 0.0025 28.1 3.6 18 141-159 266-283 (320)
144 PRK09629 bifunctional thiosulf 20.2 1.7E+02 0.0037 29.8 5.0 19 142-161 221-239 (610)
145 PTZ00458 acyl CoA binding prot 20.1 2.1E+02 0.0045 21.5 4.3 33 174-206 5-37 (90)
No 1
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=9.9e-40 Score=264.02 Aligned_cols=173 Identities=58% Similarity=1.032 Sum_probs=164.1
Q ss_pred cccceEEccchhHHHHHHhhhccCCCcccccccEEEcCCCCC-CChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceE
Q 023357 35 AGARILFYPTLLYNVFRNKIQAEFRWWDEVDQFLLLGAVPFP-KDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDH 113 (283)
Q Consensus 35 ~~~~~l~~P~l~~~~~~~~~~~~~~~~~~I~~~L~lG~~~~~-~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~ 113 (283)
+++|++|||+|+||++|+| .+.++|| +|++++.+|.+|+. .+.+.++++|+..|+.|++++|...+.+.|++.||++
T Consensus 1 ~~ar~~fyptllynvv~~k-~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~ 78 (183)
T KOG1719|consen 1 MGARVLFYPTLLYNVVREK-ASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEF 78 (183)
T ss_pred CCceeeecHHHHHHHHHHH-Hhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhcccee
Confidence 4789999999999999999 6789999 99999999999986 5678899999999999999999888888999999999
Q ss_pred EEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHH
Q 023357 114 LVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPS 193 (283)
Q Consensus 114 ~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~ 193 (283)
+.+|+.|...+|+.+.+.++++||++....|+.|||||++|++||+|+++||||+..+|++++|++++|++||.+.+.++
T Consensus 79 L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~ 158 (183)
T KOG1719|consen 79 LVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPA 158 (183)
T ss_pred EEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcccC
Q 023357 194 QWKAVQEFSQRKLAIT 209 (283)
Q Consensus 194 q~~~L~~~~~~~~~~~ 209 (283)
||+.|.+|++......
T Consensus 159 Qw~~l~ef~~~~~~~~ 174 (183)
T KOG1719|consen 159 QWDVLKEFYKQIVANA 174 (183)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987443
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=3.5e-31 Score=215.95 Aligned_cols=137 Identities=26% Similarity=0.447 Sum_probs=126.5
Q ss_pred ccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHh
Q 023357 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNS 141 (283)
Q Consensus 62 ~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~ 141 (283)
++|.|+||+|+++.+.+.+.|+++||++||||+.+.+. ....+++|+++|+.|....+..+.+.++++||+..+
T Consensus 2 ~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~ 75 (138)
T smart00195 2 SEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAE 75 (138)
T ss_pred cEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999987542 124789999999999656777889999999999999
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHH
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQR 204 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~ 204 (283)
.+|++|||||.+|.||||++++||||+..|+++++|++++|++||.+.+|+.|+++|++|+++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999863
No 3
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=3.9e-31 Score=216.98 Aligned_cols=167 Identities=24% Similarity=0.312 Sum_probs=148.4
Q ss_pred CCcccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHH
Q 023357 59 RWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIH 138 (283)
Q Consensus 59 ~~~~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~ 138 (283)
.=+++|++.||+++-..+.+...|+++||++|||.+.+. |+..+ .+++|.++|+.|.+.++..++|+.+.+.|+
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~----pn~~l--~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~ 88 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV----PNTSL--PDIQYMKVPLEDTPQARLYDHFDPVADKIH 88 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCC----CCccC--CCceeEEEEcccCCcchhhhhhhHHHHHHH
Confidence 345799999999988888898999999999999999874 33333 688999999999999999999999999999
Q ss_pred HHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHcccCCCCCCCCCc
Q 023357 139 SNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKLAITAPYSPSVDA 218 (283)
Q Consensus 139 ~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~~~~~~~~~~~~~ 218 (283)
....+||++||||.+|++||+++|+||||++++|++.+|+.+++++||.+.||.+||+||..|+++++++. +..+
T Consensus 89 ~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~-----sV~M 163 (198)
T KOG1718|consen 89 SVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA-----SVRM 163 (198)
T ss_pred HHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC-----eEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998554 4445
Q ss_pred eeeCCCCCCCCCCccCCC
Q 023357 219 VLITKADLEGYHGTCDDT 236 (283)
Q Consensus 219 ~~~t~~dl~g~~~~~~~~ 236 (283)
+..+..|...+|.|.++.
T Consensus 164 V~~p~~d~~iPDvye~e~ 181 (198)
T KOG1718|consen 164 VQTPVGDQLIPDVYEKEA 181 (198)
T ss_pred EeccccCccCchhhcccc
Confidence 666777778888886653
No 4
>PRK12361 hypothetical protein; Provisional
Probab=99.97 E-value=2e-31 Score=263.04 Aligned_cols=171 Identities=26% Similarity=0.416 Sum_probs=149.1
Q ss_pred HhhcccceEEccchhH----HHHHHhhhccCCCcccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCcchhh
Q 023357 32 LVGAGARILFYPTLLY----NVFRNKIQAEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYH 107 (283)
Q Consensus 32 ~~~~~~~~l~~P~l~~----~~~~~~~~~~~~~~~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~ 107 (283)
.+++++||||+|||++ ++|.++. .+.+|+++|.|+||+|+.+.+.|.+.|+++||++||||+.+.+.. .....
T Consensus 63 ~~~~~~~~l~~P~l~~~~~~~~~~r~~-~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~--~~~~~ 139 (547)
T PRK12361 63 TIPWYIRWVFIPFLLGTRLYNAWARKR-DSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGL--DWSLT 139 (547)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcc-cCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccc--ccccc
Confidence 4678999999999954 4444443 466899999999999999999999999999999999999765421 11223
Q ss_pred hcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHh-ccCCHHHHHHHHHhhCC
Q 023357 108 AHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEY-KHMAPAAALEYVRCRRP 186 (283)
Q Consensus 108 ~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~-~~~~~~~A~~~vr~~Rp 186 (283)
..+++|+++|+.|.. .|+.+++.++++||++.+++|++|||||.+|+|||+++++||||.. .++++++|++++|++||
T Consensus 140 ~~~i~yl~iPi~D~~-~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp 218 (547)
T PRK12361 140 EEDIDYLNIPILDHS-VPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRK 218 (547)
T ss_pred ccCceEEEeecCCCC-CCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCC
Confidence 468999999999974 7788999999999999999999999999999999999999999966 58999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHHc
Q 023357 187 RVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 187 ~i~~~~~q~~~L~~~~~~~~ 206 (283)
.+.+|+.|+++|++|+++..
T Consensus 219 ~v~~n~~q~~~l~~~~~~~~ 238 (547)
T PRK12361 219 TARLNKRQLRALEKMLEQGK 238 (547)
T ss_pred CCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999998754
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=2.1e-29 Score=204.92 Aligned_cols=138 Identities=28% Similarity=0.411 Sum_probs=126.2
Q ss_pred cccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHH
Q 023357 61 WDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSN 140 (283)
Q Consensus 61 ~~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~ 140 (283)
.++|.++||+|+++.+.+.+.|++.||++||||+++.+. ..+...|++|+++|+.|....+....+..++++|+..
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999987652 3345689999999999876566677899999999999
Q ss_pred hcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHH
Q 023357 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFS 202 (283)
Q Consensus 141 ~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~ 202 (283)
..++++|||||.+|.|||++++++|||+.+++++.+|++++|++||.+.+|+.|+.+|.+|+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 88899999999999999999999999999999999999999999999999999999999985
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.96 E-value=4.6e-29 Score=201.91 Aligned_cols=133 Identities=35% Similarity=0.591 Sum_probs=122.7
Q ss_pred EEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcE
Q 023357 68 LLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTT 147 (283)
Q Consensus 68 L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~V 147 (283)
||+|+.+.+. ...|+++||++|||++.+.+. ...+...+++|+++|+.|....+....+..+++||++..++|++|
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~---~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 76 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPN---PYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKV 76 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSST---SHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcC---chhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhccccee
Confidence 7999999999 999999999999999987542 144567899999999998666888899999999999999999999
Q ss_pred EEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHH
Q 023357 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQR 204 (283)
Q Consensus 148 lVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~ 204 (283)
||||.+|.|||+++++||||...+|++++|+++++++||.+.+++.|+++|++|+++
T Consensus 77 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 77 LVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999975
No 7
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.95 E-value=4e-27 Score=205.85 Aligned_cols=143 Identities=20% Similarity=0.256 Sum_probs=131.2
Q ss_pred CcccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHH
Q 023357 60 WWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHS 139 (283)
Q Consensus 60 ~~~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~ 139 (283)
++.+|.|+||+|+...+.+.+.|+++||++|||++... |+.+-....+.|..||+.|+...+....|.+|+.||++
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl----pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIde 246 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL----PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDE 246 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCC----cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHH
Confidence 34589999999999999999999999999999999753 33333345689999999999888888899999999999
Q ss_pred HhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHc
Q 023357 140 NSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 140 ~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
+++++..|||||-+|++||+|+++||||+...+++.+|+++|+.++.++.||..|+-||..|++.+-
T Consensus 247 Arsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlg 313 (343)
T KOG1717|consen 247 ARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLG 313 (343)
T ss_pred hhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
No 8
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.94 E-value=6e-26 Score=207.01 Aligned_cols=147 Identities=28% Similarity=0.409 Sum_probs=133.8
Q ss_pred CCcccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCcchhhhc-CceEEEEeCCCCCCCCcHHHHHHHHHHH
Q 023357 59 RWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAH-GIDHLVIPTRDYLFAPSFVDIRRAVDFI 137 (283)
Q Consensus 59 ~~~~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~-gi~~~~ip~~D~~~~~~~~~l~~av~~I 137 (283)
.-+..|.|+||+|+...+.+.+.|++.||++|+|+....+ ...+... +++|+++|+.|.+..+...++.++++||
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~----~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI 148 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCP----NPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFI 148 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCC----ccccccccCceEEeccccCCccccHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999988643 2112223 8999999999998888899999999999
Q ss_pred HHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHcccC
Q 023357 138 HSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKLAIT 209 (283)
Q Consensus 138 ~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~~~~ 209 (283)
+.++.+++.|||||.+|++||+++++||||++.+|++++|+++|+.+||.+.||.+|+.||.+|++.+....
T Consensus 149 ~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~ 220 (285)
T KOG1716|consen 149 EKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKS 220 (285)
T ss_pred HHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997543
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.93 E-value=7.5e-25 Score=184.67 Aligned_cols=143 Identities=26% Similarity=0.372 Sum_probs=123.5
Q ss_pred CCcccccccEEEcCCCCCCC----hhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHH
Q 023357 59 RWWDEVDQFLLLGAVPFPKD----VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAV 134 (283)
Q Consensus 59 ~~~~~I~~~L~lG~~~~~~~----~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av 134 (283)
+-.+-+...++.-..|.... ++.|+++||++||+++++. ++.+.+...||.|+++|+.|. .+|+.+.+.+++
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~---~~~~~~~~~gi~~~~~p~~D~-~~P~~~~i~~~~ 84 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT---YDAELLEKNGIEVHDWPFDDG-APPPKAVIDNWL 84 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC---CCHHHHHHCCCEEEecCCCCC-CCCCHHHHHHHH
Confidence 33455788888888888754 4888999999999998753 355677789999999999996 488888888999
Q ss_pred HHHHHHhcC----CCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHc
Q 023357 135 DFIHSNSCA----GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 135 ~~I~~~~~~----~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
+++++.++. |++|+|||.+|+||||+++++|||+.+++++++|++++|++||+++ +..|+++|.+|.+...
T Consensus 85 ~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~ 159 (166)
T PTZ00242 85 RLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKK 159 (166)
T ss_pred HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhc
Confidence 999887654 8999999999999999999999999889999999999999999986 7999999999998664
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.92 E-value=5e-24 Score=186.66 Aligned_cols=133 Identities=20% Similarity=0.293 Sum_probs=117.9
Q ss_pred EEEcCCCCCC----ChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcC
Q 023357 68 LLLGAVPFPK----DVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA 143 (283)
Q Consensus 68 L~lG~~~~~~----~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~ 143 (283)
+++-..|... .++.|+++||++||+++++ .++.+.+++.||.++++|++|. .+|..+.+.+++++++..++.
T Consensus 94 fLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~---~Yd~~~~~~~GI~~~~lpipDg-~aPs~~~i~~~l~~i~~~l~~ 169 (241)
T PTZ00393 94 ILILDAPTNDLLPLYIKEMKNYNVTDLVRTCER---TYNDGEITSAGINVHELIFPDG-DAPTVDIVSNWLTIVNNVIKN 169 (241)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CCCHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHHHHhc
Confidence 5556666654 4588999999999999875 3466778899999999999997 588888999999999998888
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHc
Q 023357 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 144 ~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
|++|+|||.+|.||||+++++|||. .||++++|+++||++||+++ +..|+++|.+|+++..
T Consensus 170 g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 170 NRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKKK 230 (241)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcc
Confidence 9999999999999999999999996 79999999999999999996 8999999999999864
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.88 E-value=9.2e-22 Score=167.32 Aligned_cols=119 Identities=28% Similarity=0.457 Sum_probs=110.2
Q ss_pred hHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHH
Q 023357 80 PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRST 159 (283)
Q Consensus 80 ~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSg 159 (283)
..++.++++.++.|+.. .++.+.+...||.|+++|+.|. .+|+...+.++++..+.+.+ +++|.|||++|.||||
T Consensus 88 ~~~~~~~v~s~vrln~~---~yd~~~f~~~Gi~h~~l~f~Dg-~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG 162 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKR---LYDAKRFTDAGIDHHDLFFADG-STPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTG 162 (225)
T ss_pred HHhhhcccceEEEcCCC---CCChHHhcccCceeeeeecCCC-CCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchh
Confidence 34567899999999875 4677888999999999999997 59999999999999999988 9999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHH
Q 023357 160 TIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQ 203 (283)
Q Consensus 160 tvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~ 203 (283)
+++|||||+..||++.||+.+||..||++++++.|...+.++..
T Consensus 163 ~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 163 TLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887
No 12
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.86 E-value=1.4e-22 Score=168.29 Aligned_cols=156 Identities=26% Similarity=0.400 Sum_probs=89.3
Q ss_pred CceeecccccccccccccccCccccchHHHHHhhcccceEEccchhHHHHHHhhhccCCCcccccccEEEcCCCCCCChh
Q 023357 1 MKIEELDDVEHDRNDDGCRTTQIVKADAKRALVGAGARILFYPTLLYNVFRNKIQAEFRWWDEVDQFLLLGAVPFPKDVP 80 (283)
Q Consensus 1 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~l~~~~~~~~~~~~~~~~~~I~~~L~lG~~~~~~~~~ 80 (283)
|+++|+++++||+.+++.++.++-+++....-.+..-.+.++|..-+.-+++ ....|++
T Consensus 7 ~~~~~~~ss~~~~~~~~~~P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~R---------------------dL~~DL~ 65 (168)
T PF05706_consen 7 MRTSEFDSSDEEVVEEEQTPIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRR---------------------DLQADLE 65 (168)
T ss_dssp ----------------BTS----EEEE-GGGT-SSEEEEES-TT-EETTEEB----------------------HHHHHH
T ss_pred cccccCCCCccCcccccCCceeeeeecccccCCcceeeeecCCCcccccccc---------------------hHHHHHH
Confidence 8999999998888777778888888886666666666677777643322211 1236788
Q ss_pred HHHhCCCeeEEEecCCCCC---CCC--cchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 023357 81 RLKQLGVGGVITLNEPYET---LVP--SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGR 155 (283)
Q Consensus 81 ~L~~~gI~~VI~L~~~~e~---~~~--~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~ 155 (283)
.|+..|++.||.|.+..|. ..+ ...+++.|+.++++|+.|.. +|....+.++++.|...+++|++|+|||..|.
T Consensus 66 ~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~-aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGl 144 (168)
T PF05706_consen 66 RLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS-APDFAAAWQILEELAARLENGRKVLVHCRGGL 144 (168)
T ss_dssp HHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS----HHHHHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred HHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 9999999999999987665 223 35688999999999999985 67777777888999999999999999999999
Q ss_pred ChHHHHHHHHHHHhc-cCCHHHHH
Q 023357 156 GRSTTIVLCYLVEYK-HMAPAAAL 178 (283)
Q Consensus 156 ~RSgtvv~ayLm~~~-~~~~~~A~ 178 (283)
||||+++||+|+... .+++++|+
T Consensus 145 GRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 145 GRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp SHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CHHHHHHHHHHHHHcCCCChhhcC
Confidence 999999999999654 47999986
No 13
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.75 E-value=1.7e-18 Score=145.68 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=91.1
Q ss_pred CcccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCC---CCcHHHHHHHHHH
Q 023357 60 WWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLF---APSFVDIRRAVDF 136 (283)
Q Consensus 60 ~~~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~---~~~~~~l~~av~~ 136 (283)
-|..|.++||.|++|.+.++..|+++|+++||+|+.+........++++.||+++++++..... ....+.+.++++.
T Consensus 6 nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ 85 (164)
T PF03162_consen 6 NFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEI 85 (164)
T ss_dssp T-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHH
T ss_pred cccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHH
Confidence 3568999999999999999999999999999999976432111235678999999999965432 2345677888887
Q ss_pred HHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHc
Q 023357 137 IHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 137 I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
|.+. ++.||||||..|.+|||++++||- +.+||+...|++..+.--.. ..+..-.++++.|..++.
T Consensus 86 ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~~~~~ 151 (164)
T PF03162_consen 86 ILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFDVELV 151 (164)
T ss_dssp HH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT------
T ss_pred HhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcCccee
Confidence 7554 357999999999999999999998 78999999999999864332 345566677777777665
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.72 E-value=1e-16 Score=136.97 Aligned_cols=101 Identities=31% Similarity=0.453 Sum_probs=86.5
Q ss_pred hhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhcc-CCHHHHHHHHHh
Q 023357 105 LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKH-MAPAAALEYVRC 183 (283)
Q Consensus 105 ~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~-~~~~~A~~~vr~ 183 (283)
.....|+.++++|+.|.. .|...++.+++++|+..+++|++|+|||.+|+|||||+++||||.+++ +..++++..++.
T Consensus 67 ~~~~~~~~~~~~~~~D~~-~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~ 145 (180)
T COG2453 67 IEENDGIQVLHLPILDGT-VPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRR 145 (180)
T ss_pred eeccCCceeeeeeecCCC-CCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 344678999999999974 777899999999999999999999999999999999999999999954 588899999999
Q ss_pred hCCCCccCHHHHHHHHHHHHHHc
Q 023357 184 RRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 184 ~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
+||..+....|..+..+......
T Consensus 146 ~r~~~v~~~~q~~~~~e~~~~~~ 168 (180)
T COG2453 146 RRPGAVVTEIQHLFELEQELFRK 168 (180)
T ss_pred cCCcccccHHHHHHHHHHHHHHh
Confidence 99876667777766666665543
No 15
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.65 E-value=2.5e-15 Score=119.63 Aligned_cols=122 Identities=24% Similarity=0.330 Sum_probs=99.0
Q ss_pred ChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHh--cCCCcEEEEcCCCC
Q 023357 78 DVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNS--CAGKTTYVHCKAGR 155 (283)
Q Consensus 78 ~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~--~~~~~VlVHC~~G~ 155 (283)
-++.|+++|+++||-++++ .++....++.||+.+.+|..|. .+|..+.++.-.+.+.... .-|..|.|||.+|.
T Consensus 33 fieELkKygvttvVRVCe~---TYdt~~lek~GI~Vldw~f~dg-~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvagl 108 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEP---TYDTTPLEKEGITVLDWPFDDG-APPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGL 108 (173)
T ss_pred HHHHHHhcCCeEEEEeccc---ccCCchhhhcCceEeecccccC-CCCchHHHHHHHHHHHHHHhhCCCCeEEEEeeccc
Confidence 3678999999999999986 3566677889999999999996 4555544444444433222 23688999999999
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHH
Q 023357 156 GRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRK 205 (283)
Q Consensus 156 ~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~ 205 (283)
||+..+++..|+ ..||..++|++++|.+|.++. |..|+.+|++|..+.
T Consensus 109 grapvlvalali-e~gmkyedave~ir~krrga~-n~kql~~lekyrpk~ 156 (173)
T KOG2836|consen 109 GRAPVLVALALI-EAGMKYEDAVEMIRQKRRGAI-NSKQLLYLEKYRPKM 156 (173)
T ss_pred CcchHHHHHHHH-HccccHHHHHHHHHHHhhccc-cHHHHHHHHHhCccc
Confidence 999999999999 699999999999999998876 999999999887543
No 16
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.62 E-value=6.1e-15 Score=120.31 Aligned_cols=119 Identities=16% Similarity=0.121 Sum_probs=94.2
Q ss_pred ccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCC-CCcc-----hhhhcCceEEEEeCCCCCCCCcHHHHHHHHH
Q 023357 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETL-VPSS-----LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVD 135 (283)
Q Consensus 62 ~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~-~~~~-----~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~ 135 (283)
.+|++.+|+++.+...+++.|+++||++||||..+.|.. .|.. .....|+.|+++|+... ..+.+.+..+.+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 479999999999999999999999999999999876542 2221 22457999999998764 334556666666
Q ss_pred HHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCC
Q 023357 136 FIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPR 187 (283)
Q Consensus 136 ~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~ 187 (283)
+++. ..+|||+||++|. ||+++.+.++.. .|++.+++++..+...-.
T Consensus 81 ~~~~---~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~ 127 (135)
T TIGR01244 81 AIGA---AEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYD 127 (135)
T ss_pred HHHh---CCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCC
Confidence 6653 3589999999999 999999887764 889999999999876543
No 17
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.48 E-value=3.7e-13 Score=103.18 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=70.0
Q ss_pred EEeCCCCCCCCcHHHHHHHHHHHHHHhc---CCCcEEEEcCCCCChHHHHHHHHHHHhc------cCCHHHHHHHHHhhC
Q 023357 115 VIPTRDYLFAPSFVDIRRAVDFIHSNSC---AGKTTYVHCKAGRGRSTTIVLCYLVEYK------HMAPAAALEYVRCRR 185 (283)
Q Consensus 115 ~ip~~D~~~~~~~~~l~~av~~I~~~~~---~~~~VlVHC~~G~~RSgtvv~ayLm~~~------~~~~~~A~~~vr~~R 185 (283)
...++|...+.....+.+++..+++... .++||+|||.+|.||||+++++|++..+ ..++.+++..+|..|
T Consensus 7 ~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r 86 (105)
T smart00012 7 YTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQR 86 (105)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 3344555434444677777777777654 2689999999999999999999999653 268999999999999
Q ss_pred CCCccCHHHHHHHHHHH
Q 023357 186 PRVLLAPSQWKAVQEFS 202 (283)
Q Consensus 186 p~i~~~~~q~~~L~~~~ 202 (283)
|+...+..|+.+++...
T Consensus 87 ~~~~~~~~q~~~~~~~~ 103 (105)
T smart00012 87 PGMVQTFEQYLFLYRAL 103 (105)
T ss_pred hhhCCcHHHHHHHHHHH
Confidence 99999999999988653
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.48 E-value=3.7e-13 Score=103.18 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=70.0
Q ss_pred EEeCCCCCCCCcHHHHHHHHHHHHHHhc---CCCcEEEEcCCCCChHHHHHHHHHHHhc------cCCHHHHHHHHHhhC
Q 023357 115 VIPTRDYLFAPSFVDIRRAVDFIHSNSC---AGKTTYVHCKAGRGRSTTIVLCYLVEYK------HMAPAAALEYVRCRR 185 (283)
Q Consensus 115 ~ip~~D~~~~~~~~~l~~av~~I~~~~~---~~~~VlVHC~~G~~RSgtvv~ayLm~~~------~~~~~~A~~~vr~~R 185 (283)
...++|...+.....+.+++..+++... .++||+|||.+|.||||+++++|++..+ ..++.+++..+|..|
T Consensus 7 ~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r 86 (105)
T smart00404 7 YTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQR 86 (105)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 3344555434444677777777777654 2689999999999999999999999653 268999999999999
Q ss_pred CCCccCHHHHHHHHHHH
Q 023357 186 PRVLLAPSQWKAVQEFS 202 (283)
Q Consensus 186 p~i~~~~~q~~~L~~~~ 202 (283)
|+...+..|+.+++...
T Consensus 87 ~~~~~~~~q~~~~~~~~ 103 (105)
T smart00404 87 PGMVQTFEQYLFLYRAL 103 (105)
T ss_pred hhhCCcHHHHHHHHHHH
Confidence 99999999999988653
No 19
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.46 E-value=1.8e-13 Score=107.65 Aligned_cols=98 Identities=24% Similarity=0.343 Sum_probs=66.1
Q ss_pred ccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCC-CC-----cchhhhcCceEEEEeCCCCCCCCcHHHHHHHHH
Q 023357 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETL-VP-----SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVD 135 (283)
Q Consensus 62 ~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~-~~-----~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~ 135 (283)
.+|.+.+++++++.+.++..|++.|+++|||++.+.|.. .| ....++.|+.|+++|+... .++.+++..+.+
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFAD 80 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHHH
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 479999999999999999999999999999999776532 12 1346689999999999764 456677777776
Q ss_pred HHHHHhcCCCcEEEEcCCCCChHHHHHHHH
Q 023357 136 FIHSNSCAGKTTYVHCKAGRGRSTTIVLCY 165 (283)
Q Consensus 136 ~I~~~~~~~~~VlVHC~~G~~RSgtvv~ay 165 (283)
.++.. .+|||+||+.|. |++++.++.
T Consensus 81 ~l~~~---~~Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 81 ALESL---PKPVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp HHHTT---TTSEEEE-SCSH-HHHHHHHHH
T ss_pred HHHhC---CCCEEEECCCCh-hHHHHHHHH
Confidence 66653 679999999996 998876654
No 20
>PLN02727 NAD kinase
Probab=99.39 E-value=1.7e-12 Score=131.35 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=87.1
Q ss_pred cEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCC-----cchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHh
Q 023357 67 FLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVP-----SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNS 141 (283)
Q Consensus 67 ~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~-----~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~ 141 (283)
.+|++++|.+.+++.|.+.||++||||+.+.+...+ .+..++.|++|+++|+.+. .+|+.+++.++.+++++.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~-~apt~EqVe~fa~~l~~s- 339 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVR-TAPSAEQVEKFASLVSDS- 339 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHhh-
Confidence 489999999999999999999999999987662111 1235568999999999875 488889999999999553
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccCC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~ 173 (283)
..+|||+||+.|.+|+|+|++||+.+..+..
T Consensus 340 -lpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 340 -SKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred -cCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 3689999999999999999999999876654
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.37 E-value=3.9e-12 Score=112.21 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=74.7
Q ss_pred cCceEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhc--CCCcEEEEcCCCCChHHHHHHHHHHHhc-----cCCHHHHHHH
Q 023357 109 HGIDHLVIP-TRDYLFAPSFVDIRRAVDFIHSNSC--AGKTTYVHCKAGRGRSTTIVLCYLVEYK-----HMAPAAALEY 180 (283)
Q Consensus 109 ~gi~~~~ip-~~D~~~~~~~~~l~~av~~I~~~~~--~~~~VlVHC~~G~~RSgtvv~ayLm~~~-----~~~~~~A~~~ 180 (283)
+.+.|+++. ++|...++....+.+++..++.... .++||+|||.+|.||||++++++++..+ .+++.+++..
T Consensus 128 ~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 128 RTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred eEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 445666666 3565544455677777777776643 3689999999999999999999887443 5799999999
Q ss_pred HHhhCCCCccCHHHHHHHHHHH
Q 023357 181 VRCRRPRVLLAPSQWKAVQEFS 202 (283)
Q Consensus 181 vr~~Rp~i~~~~~q~~~L~~~~ 202 (283)
+|++||+++.+..|+.+++...
T Consensus 208 iR~~R~~~v~~~~Qy~f~~~~l 229 (231)
T cd00047 208 LRSQRPGMVQTEEQYIFLYRAI 229 (231)
T ss_pred HHhccccccCCHHHHHHHHHHH
Confidence 9999999999999999998653
No 22
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.32 E-value=1.2e-11 Score=118.55 Aligned_cols=96 Identities=20% Similarity=0.263 Sum_probs=76.1
Q ss_pred ceEEEEeC-CCCCCCCcHHHHHHHHHHHHHHhcCC---------CcEEEEcCCCCChHHHHHHHHHHHhccC-CHHHHHH
Q 023357 111 IDHLVIPT-RDYLFAPSFVDIRRAVDFIHSNSCAG---------KTTYVHCKAGRGRSTTIVLCYLVEYKHM-APAAALE 179 (283)
Q Consensus 111 i~~~~ip~-~D~~~~~~~~~l~~av~~I~~~~~~~---------~~VlVHC~~G~~RSgtvv~ayLm~~~~~-~~~~A~~ 179 (283)
|.++|+.. +|++.++....+..+++.++.....+ .+.+|||++|+|||||+|++++++..++ ++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 45666654 78776666556777776666542211 2247999999999999999999976654 9999999
Q ss_pred HHHhhCCC-CccCHHHHHHHHHHHHHHc
Q 023357 180 YVRCRRPR-VLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 180 ~vr~~Rp~-i~~~~~q~~~L~~~~~~~~ 206 (283)
.+|..|++ ++.+.+|+.+|++.+..++
T Consensus 503 dlR~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred HHHhcCCccccccHHHHHHHHHHHHHHh
Confidence 99999998 9999999999999998876
No 23
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.32 E-value=1.2e-11 Score=111.01 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=71.4
Q ss_pred ceEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhcC-CCcEEEEcCCCCChHHHHHHHHHHHh-----ccCCHHHHHHHHHh
Q 023357 111 IDHLVIP-TRDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYVRC 183 (283)
Q Consensus 111 i~~~~ip-~~D~~~~~~~~~l~~av~~I~~~~~~-~~~VlVHC~~G~~RSgtvv~ayLm~~-----~~~~~~~A~~~vr~ 183 (283)
+.++++. ++|...+.....+.+++..++..... ++||+|||.+|.||||++++++++.. ..+++.++++.+|+
T Consensus 158 v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~ 237 (258)
T smart00194 158 VTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRS 237 (258)
T ss_pred EEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4444444 35655343556677777777766443 68999999999999999999988743 45799999999999
Q ss_pred hCCCCccCHHHHHHHHHH
Q 023357 184 RRPRVLLAPSQWKAVQEF 201 (283)
Q Consensus 184 ~Rp~i~~~~~q~~~L~~~ 201 (283)
+||+++.+..|+.+++..
T Consensus 238 ~R~~~v~~~~Qy~f~~~~ 255 (258)
T smart00194 238 QRPGMVQTEEQYIFLYRA 255 (258)
T ss_pred ccccccCCHHHHHHHHHH
Confidence 999999999999999865
No 24
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.27 E-value=4e-11 Score=110.11 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=71.5
Q ss_pred cCceEEEEe-CCCCCCCCcHHHHHHHHHHHHHHh---------cCCCcEEEEcCCCCChHHHHHHHHHHH-----hccCC
Q 023357 109 HGIDHLVIP-TRDYLFAPSFVDIRRAVDFIHSNS---------CAGKTTYVHCKAGRGRSTTIVLCYLVE-----YKHMA 173 (283)
Q Consensus 109 ~gi~~~~ip-~~D~~~~~~~~~l~~av~~I~~~~---------~~~~~VlVHC~~G~~RSgtvv~ayLm~-----~~~~~ 173 (283)
..|.|+++. ++|++.+.....|.+++..+++.. ...+||+|||++|+||||++|+...+. .+.++
T Consensus 176 r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vd 255 (298)
T PHA02740 176 QKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLS 255 (298)
T ss_pred EEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCccc
Confidence 345555553 356665555555555554444321 124799999999999999999876653 34569
Q ss_pred HHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHc
Q 023357 174 PAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 174 ~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
+.+++..+|.+|++++.+..|+.++++.-.+++
T Consensus 256 i~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~yl 288 (298)
T PHA02740 256 IANALKKVRQKKYGCMNCLDDYVFCYHLIAAYL 288 (298)
T ss_pred HHHHHHHHHhhCccccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776654
No 25
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.24 E-value=7.7e-11 Score=108.59 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=72.2
Q ss_pred ceEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhc------------CCCcEEEEcCCCCChHHHHHHHHHHHh-----ccC
Q 023357 111 IDHLVIP-TRDYLFAPSFVDIRRAVDFIHSNSC------------AGKTTYVHCKAGRGRSTTIVLCYLVEY-----KHM 172 (283)
Q Consensus 111 i~~~~ip-~~D~~~~~~~~~l~~av~~I~~~~~------------~~~~VlVHC~~G~~RSgtvv~ayLm~~-----~~~ 172 (283)
+.|+++. ++|.+.+.....|.+++..+++... ..+||+|||.+|+||||++|++..+.. ...
T Consensus 183 V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v 262 (303)
T PHA02742 183 IKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAII 262 (303)
T ss_pred EEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCC
Confidence 4555554 3666655555566666655554211 137999999999999999998766632 345
Q ss_pred CHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHc
Q 023357 173 APAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 173 ~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
++.++++.+|.+|++++.+..|+.+++..-.+++
T Consensus 263 ~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y~ 296 (303)
T PHA02742 263 PLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFA 296 (303)
T ss_pred CHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877776
No 26
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.21 E-value=1.9e-10 Score=90.12 Aligned_cols=115 Identities=15% Similarity=0.118 Sum_probs=91.0
Q ss_pred ccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCc------chhhhcCceEEEEeCCCCCCCCcHHHHHHHHH
Q 023357 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPS------SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVD 135 (283)
Q Consensus 62 ~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~------~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~ 135 (283)
.+|++.+.+++++...|+..++..|++.|||...+.|....+ ...+..|+.|.++|+... ..+..++..+.+
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~ 81 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQR 81 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHH
Confidence 479999999999999999999999999999999876642221 345678999999999764 445667777777
Q ss_pred HHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHh
Q 023357 136 FIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRC 183 (283)
Q Consensus 136 ~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~ 183 (283)
.+.++ ++|||.||+.|. ||.++-..-. ...||+.+++..+=+.
T Consensus 82 Al~ea---egPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a 124 (130)
T COG3453 82 ALDEA---EGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQA 124 (130)
T ss_pred HHHHh---CCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHh
Confidence 77765 789999999995 8876655544 5689999988776443
No 27
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.21 E-value=1.9e-10 Score=100.12 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=94.8
Q ss_pred cccccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCC------CCCc-HHHHHHH
Q 023357 61 WDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYL------FAPS-FVDIRRA 133 (283)
Q Consensus 61 ~~~I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~------~~~~-~~~l~~a 133 (283)
|+-|+++||.|++|.+.+..+|+.+++++||.|+.+......-.+++..+|++++|.+...- ..+. .+.+..+
T Consensus 60 Fs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~ 139 (249)
T KOG1572|consen 60 FSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKA 139 (249)
T ss_pred ccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHH
Confidence 34688899999999999999999999999999998742112234788999999999985432 1222 3456677
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhC
Q 023357 134 VDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRR 185 (283)
Q Consensus 134 v~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~R 185 (283)
+.++-. ..+.|+||||..|..|+|++|.|.- +.++|++.-.+...+..-
T Consensus 140 l~~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 140 LKVLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFA 188 (249)
T ss_pred HHHHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhc
Confidence 776443 2468999999999999999999976 789998888777765544
No 28
>PHA02738 hypothetical protein; Provisional
Probab=99.20 E-value=1.1e-10 Score=108.27 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=72.8
Q ss_pred CceEEEEeC-CCCCCCCcHHHHHHHHHHHHHHhc--------------CCCcEEEEcCCCCChHHHHHHHHHHH-----h
Q 023357 110 GIDHLVIPT-RDYLFAPSFVDIRRAVDFIHSNSC--------------AGKTTYVHCKAGRGRSTTIVLCYLVE-----Y 169 (283)
Q Consensus 110 gi~~~~ip~-~D~~~~~~~~~l~~av~~I~~~~~--------------~~~~VlVHC~~G~~RSgtvv~ayLm~-----~ 169 (283)
-|.|+++.. +|.+.+.....|.+++..+++..+ ..+||+|||.+|.||||++|+...+. .
T Consensus 178 ~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~ 257 (320)
T PHA02738 178 TVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDAC 257 (320)
T ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhc
Confidence 356665543 566545455556666555554211 13699999999999999999876542 2
Q ss_pred ccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHcc
Q 023357 170 KHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKLA 207 (283)
Q Consensus 170 ~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~~ 207 (283)
..+++.+++..+|.+|++++.+..|+.++++.-.+++.
T Consensus 258 ~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y~~ 295 (320)
T PHA02738 258 ATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVN 295 (320)
T ss_pred CCcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999999988877763
No 29
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.19 E-value=1.7e-10 Score=107.22 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=72.8
Q ss_pred CceEEEEeC-CCCCCCCcHHHHHHHHHHHHHHhc-------C----CCcEEEEcCCCCChHHHHHHHHHHH-----hccC
Q 023357 110 GIDHLVIPT-RDYLFAPSFVDIRRAVDFIHSNSC-------A----GKTTYVHCKAGRGRSTTIVLCYLVE-----YKHM 172 (283)
Q Consensus 110 gi~~~~ip~-~D~~~~~~~~~l~~av~~I~~~~~-------~----~~~VlVHC~~G~~RSgtvv~ayLm~-----~~~~ 172 (283)
.+.|+++.. +|.+.+.....|.+++..+++... . .+||+|||.+|+||||++|+...+. ...+
T Consensus 201 ~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~v 280 (323)
T PHA02746 201 EIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEV 280 (323)
T ss_pred EEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCC
Confidence 356666554 666545445566666655554321 1 2799999999999999999875542 2456
Q ss_pred CHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHc
Q 023357 173 APAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 173 ~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
++.+++..+|.+|++++.+..|+.++++.-..++
T Consensus 281 dv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~~l 314 (323)
T PHA02746 281 CLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYAI 314 (323)
T ss_pred CHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877765
No 30
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.18 E-value=2.2e-10 Score=106.00 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=70.4
Q ss_pred ceEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhc-----------CCCcEEEEcCCCCChHHHHHHHHHHH-----hccCC
Q 023357 111 IDHLVIP-TRDYLFAPSFVDIRRAVDFIHSNSC-----------AGKTTYVHCKAGRGRSTTIVLCYLVE-----YKHMA 173 (283)
Q Consensus 111 i~~~~ip-~~D~~~~~~~~~l~~av~~I~~~~~-----------~~~~VlVHC~~G~~RSgtvv~ayLm~-----~~~~~ 173 (283)
+.|+++. ++|.+.+.....+.+++..++...+ ..+||+|||.+|.||||++|++..+. ...++
T Consensus 184 V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~ 263 (312)
T PHA02747 184 ISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAIC 263 (312)
T ss_pred EEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCC
Confidence 4555543 3566544445556555555544321 12699999999999999999986542 24569
Q ss_pred HHHHHHHHHhhCCCCccCHHHHHHH---HHHHHHHc
Q 023357 174 PAAALEYVRCRRPRVLLAPSQWKAV---QEFSQRKL 206 (283)
Q Consensus 174 ~~~A~~~vr~~Rp~i~~~~~q~~~L---~~~~~~~~ 206 (283)
+.++++.+|.+|++++.+..|+.++ ++.-..++
T Consensus 264 v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~~ 299 (312)
T PHA02747 264 LAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYFL 299 (312)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 87766654
No 31
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=99.13 E-value=1.1e-10 Score=109.28 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=117.5
Q ss_pred cccEEEcC-CCCCC-ChhHHHh--CCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHH----
Q 023357 65 DQFLLLGA-VPFPK-DVPRLKQ--LGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDF---- 136 (283)
Q Consensus 65 ~~~L~lG~-~~~~~-~~~~L~~--~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~---- 136 (283)
.+.+.-|+ .-... .+..|+. .-|.-+|||+.... +++...+...|+.|+.+-.......|..+....++..
T Consensus 38 ~~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~r-yy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f 116 (393)
T KOG2386|consen 38 STKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLR-YYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGF 116 (393)
T ss_pred CcCCCCCccccCHHHHHHHHHhcCceEEEEEeccceee-eeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHH
Confidence 33444444 22223 3445555 45778999998765 4577788899999999998776656655444444433
Q ss_pred HHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHcccCCCCCCCC
Q 023357 137 IHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKLAITAPYSPSV 216 (283)
Q Consensus 137 I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~~~~~~~~~~~ 216 (283)
.......++-|+|||.+|.+|+|.++++|||...+++..+|++.+...||........+..|+..+....+...+..+.+
T Consensus 117 ~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~p~~vs~p~~~ 196 (393)
T KOG2386|consen 117 VDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIFPFKVSCPSMP 196 (393)
T ss_pred HhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccccccccCCCCc
Confidence 33344457899999999999999999999999999999999999999999999999999999999988876665555555
Q ss_pred Cceee
Q 023357 217 DAVLI 221 (283)
Q Consensus 217 ~~~~~ 221 (283)
.+...
T Consensus 197 ~~~~~ 201 (393)
T KOG2386|consen 197 DWKRS 201 (393)
T ss_pred chhhh
Confidence 55444
No 32
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.08 E-value=4.8e-10 Score=107.24 Aligned_cols=139 Identities=22% Similarity=0.241 Sum_probs=105.8
Q ss_pred ccccccEEEcCCCCCCChh-----------HHHh--CCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHH
Q 023357 62 DEVDQFLLLGAVPFPKDVP-----------RLKQ--LGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFV 128 (283)
Q Consensus 62 ~~I~~~L~lG~~~~~~~~~-----------~L~~--~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~ 128 (283)
+=|+++|...++|...... .|.. .|=-.|.||+.+ ..++...+.. +...++++|+. +|.++
T Consensus 16 tYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~e--r~yd~~~f~g---~V~~~~~~Dh~-~P~L~ 89 (434)
T KOG2283|consen 16 TYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSE--RLYDPSRFHG---RVARFGFDDHN-PPPLE 89 (434)
T ss_pred eeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCcc--ccCCcccccc---ceeecCCCCCC-CCcHH
Confidence 3488888888888754322 2322 133348888863 3344444422 44568999974 88899
Q ss_pred HHHHHHHHHHHHhcCC--CcEEEEcCCCCChHHHHHHHHHHHhccC-CHHHHHHHHHhhC---C--CCccCHHHHHHHHH
Q 023357 129 DIRRAVDFIHSNSCAG--KTTYVHCKAGRGRSTTIVLCYLVEYKHM-APAAALEYVRCRR---P--RVLLAPSQWKAVQE 200 (283)
Q Consensus 129 ~l~~av~~I~~~~~~~--~~VlVHC~~G~~RSgtvv~ayLm~~~~~-~~~~A~~~vr~~R---p--~i~~~~~q~~~L~~ 200 (283)
.+..+++-++.+++.. .-+.|||++|.+|||++++|||+...-. ++++|+.++-.+| . .....++|.++++.
T Consensus 90 ~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y 169 (434)
T KOG2283|consen 90 LLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGY 169 (434)
T ss_pred HHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHH
Confidence 9999999999988764 6899999999999999999999976665 6999999999999 4 35678999999999
Q ss_pred HHHHHc
Q 023357 201 FSQRKL 206 (283)
Q Consensus 201 ~~~~~~ 206 (283)
|...+.
T Consensus 170 ~~~~l~ 175 (434)
T KOG2283|consen 170 FSRVLL 175 (434)
T ss_pred HHHHhh
Confidence 998543
No 33
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.06 E-value=2.9e-10 Score=95.51 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=60.8
Q ss_pred cccc-EEEcCCCCC---CChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCC---c----------
Q 023357 64 VDQF-LLLGAVPFP---KDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAP---S---------- 126 (283)
Q Consensus 64 I~~~-L~lG~~~~~---~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~---~---------- 126 (283)
|-++ ||.++.+.. .+.+.|+++||++||||..+.|....+.. ...|++++++|+.+..... .
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~-~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDP-LIDGVQYVHIPIFGDDASSPDKLAELLQSSADA 94 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------HHHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCC-CcCCceeeeecccccccccccccccccccccch
Confidence 4444 899997764 56778999999999999987664211111 1249999999985543220 0
Q ss_pred HHHH------------HHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHH
Q 023357 127 FVDI------------RRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (283)
Q Consensus 127 ~~~l------------~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~ 180 (283)
...+ ....+++.......+|+|+||++|..|||.+++..|. ..|++.++.++.
T Consensus 95 ~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~-~lGV~~~~I~~D 159 (164)
T PF13350_consen 95 PRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLS-LLGVPDEDIIAD 159 (164)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHH-HTT--HHHHHHH
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHH-HcCCCHHHHHHH
Confidence 0000 0111222223334479999999999999999988766 689988777654
No 34
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.04 E-value=1.9e-09 Score=94.39 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=71.1
Q ss_pred ceEEEEe-CCCCCCCCcHHHHHHHHHHHHHHh-cCCCcEEEEcCCCCChHHHHHHHHHHHh-----ccCCHHHHHHHHHh
Q 023357 111 IDHLVIP-TRDYLFAPSFVDIRRAVDFIHSNS-CAGKTTYVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYVRC 183 (283)
Q Consensus 111 i~~~~ip-~~D~~~~~~~~~l~~av~~I~~~~-~~~~~VlVHC~~G~~RSgtvv~ayLm~~-----~~~~~~~A~~~vr~ 183 (283)
+.++++. +.|...++....+..+++.+.... ..++||+|||.+|.||||+++++.++.. ..+++.++++.+|+
T Consensus 135 v~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~ 214 (235)
T PF00102_consen 135 VTHFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQ 214 (235)
T ss_dssp EEEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHT
T ss_pred ccceeeeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHh
Confidence 3444443 344443334566666666666665 2358999999999999999999988843 34699999999999
Q ss_pred hCCCCccCHHHHHHHHHHHH
Q 023357 184 RRPRVLLAPSQWKAVQEFSQ 203 (283)
Q Consensus 184 ~Rp~i~~~~~q~~~L~~~~~ 203 (283)
+||+++.+..|+.+++..-.
T Consensus 215 ~R~~~i~~~~qy~f~~~~~~ 234 (235)
T PF00102_consen 215 QRPGAIQSPEQYRFCYMAVL 234 (235)
T ss_dssp TSTTSSSSHHHHHHHHHHHH
T ss_pred hCCCccCCHHHHHHHHHHHh
Confidence 99999999999999997643
No 35
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=99.00 E-value=1.9e-09 Score=109.87 Aligned_cols=96 Identities=25% Similarity=0.257 Sum_probs=76.1
Q ss_pred ceEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhcC-CCcEEEEcCCCCChHHHHHHHH----HHH-hccCCHHHHHHHHHh
Q 023357 111 IDHLVIP-TRDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCY----LVE-YKHMAPAAALEYVRC 183 (283)
Q Consensus 111 i~~~~ip-~~D~~~~~~~~~l~~av~~I~~~~~~-~~~VlVHC~~G~~RSgtvv~ay----Lm~-~~~~~~~~A~~~vr~ 183 (283)
+.|+.+- ++|++.+....+|.++++.|+..+.. +.||+|||.+|+||||+++++= |+. ...+++-+.+..+|.
T Consensus 1028 V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~ 1107 (1144)
T KOG0792|consen 1028 VWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRD 1107 (1144)
T ss_pred eeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3444433 46776666778888888888887766 6799999999999999988654 342 244689999999999
Q ss_pred hCCCCccCHHHHHHHHHHHHHHc
Q 023357 184 RRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 184 ~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
+|-.++++..||+|+++.--.++
T Consensus 1108 QR~~mVQT~~QYkFVyevil~~l 1130 (1144)
T KOG0792|consen 1108 QRAMMVQTLSQYKFVYEVILRVL 1130 (1144)
T ss_pred HHhhhccchHHhhHHHHHHHHHH
Confidence 99999999999999998776665
No 36
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.92 E-value=3.1e-09 Score=99.67 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=78.8
Q ss_pred ChhHHHhCCCeeEEEecCCCCCCCC------cchhh---hcCc-eEEEEeCCCCCCCCcHHHHHHHHHHHHH---HhcCC
Q 023357 78 DVPRLKQLGVGGVITLNEPYETLVP------SSLYH---AHGI-DHLVIPTRDYLFAPSFVDIRRAVDFIHS---NSCAG 144 (283)
Q Consensus 78 ~~~~L~~~gI~~VI~L~~~~e~~~~------~~~~~---~~gi-~~~~ip~~D~~~~~~~~~l~~av~~I~~---~~~~~ 144 (283)
+...++.+|+-.|=|+.+..-..+. ...+. ...| +|+.+-++|++.+...-.+..+++-++. .+..-
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~A 451 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDA 451 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhcccccc
Confidence 5567788999888888653211111 00000 0112 3333334666533222223333333332 22234
Q ss_pred CcEEEEcCCCCChHHHHHHHHH-H---Hhc----cCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHH
Q 023357 145 KTTYVHCKAGRGRSTTIVLCYL-V---EYK----HMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRK 205 (283)
Q Consensus 145 ~~VlVHC~~G~~RSgtvv~ayL-m---~~~----~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~ 205 (283)
+||.|||+||+|||||++..=+ | +.. .+++...+++||++|.+++.+..||+++|..-+.+
T Consensus 452 gpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Avqhy 520 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVQHY 520 (600)
T ss_pred CcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHHHHH
Confidence 7999999999999999775433 3 333 46899999999999999999999999998655443
No 37
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.91 E-value=2e-09 Score=95.17 Aligned_cols=93 Identities=24% Similarity=0.276 Sum_probs=69.8
Q ss_pred CceEEEEeC-CCCCCCCcHHHHHHHHHHHHHHhc---CCCcEEEEcCCCCChHHHHHHHHHHHhcc-----------C--
Q 023357 110 GIDHLVIPT-RDYLFAPSFVDIRRAVDFIHSNSC---AGKTTYVHCKAGRGRSTTIVLCYLVEYKH-----------M-- 172 (283)
Q Consensus 110 gi~~~~ip~-~D~~~~~~~~~l~~av~~I~~~~~---~~~~VlVHC~~G~~RSgtvv~ayLm~~~~-----------~-- 172 (283)
.|.|+.++. .|.. .| .+....++++.... +.+|++|||.||.|||||+++.-.+...- +
T Consensus 184 ~Ihhf~y~nW~D~~-~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~ 259 (302)
T COG5599 184 KIHHFQYINWVDFN-VP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQ 259 (302)
T ss_pred EEEEEEecCccccC-Cc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhh
Confidence 466666665 6654 44 35555666665542 46899999999999999999876654321 1
Q ss_pred -CHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHc
Q 023357 173 -APAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 173 -~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
..++.+..+|++|-.++.|..|+.+|+....++.
T Consensus 260 D~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 260 DLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1467789999999999999999999998887775
No 38
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.69 E-value=1.2e-07 Score=77.50 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=80.5
Q ss_pred hHHHhCCCeeEEEecCCCCC-CCCcchhhh--cCceEEEEeCCCCC-CCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 023357 80 PRLKQLGVGGVITLNEPYET-LVPSSLYHA--HGIDHLVIPTRDYL-FAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGR 155 (283)
Q Consensus 80 ~~L~~~gI~~VI~L~~~~e~-~~~~~~~~~--~gi~~~~ip~~D~~-~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~ 155 (283)
+.-.+.|-+++|+|...... ..+.....+ ..+.+-.+-..|.+ ..|...++..+++|++++= +..|+||||.+|+
T Consensus 26 e~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp-~~apllIHC~aGI 104 (172)
T COG5350 26 ETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWP-RFAPLLIHCYAGI 104 (172)
T ss_pred HHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCc-cccceeeeecccc
Confidence 34456889999999875332 122111111 11122222233333 5677889999999999883 4579999999999
Q ss_pred ChHHHHHH-HHHHHhccCCHHHHHHHHHhhCCCCccCHHHHH
Q 023357 156 GRSTTIVL-CYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWK 196 (283)
Q Consensus 156 ~RSgtvv~-ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~ 196 (283)
|||...+. +.|.....|+..++.+.+|..+|-..||+..+.
T Consensus 105 SRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 105 SRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred ccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 99976543 345557889999999999999999999986654
No 39
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.66 E-value=8.4e-08 Score=86.07 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=80.6
Q ss_pred ccccEEEcCCCCCCChh--HHHhCCCeeEEEecCCCCCCCCcchhhh--------cCceEEEEeCCCCCCCCcHHHHHHH
Q 023357 64 VDQFLLLGAVPFPKDVP--RLKQLGVGGVITLNEPYETLVPSSLYHA--------HGIDHLVIPTRDYLFAPSFVDIRRA 133 (283)
Q Consensus 64 I~~~L~lG~~~~~~~~~--~L~~~gI~~VI~L~~~~e~~~~~~~~~~--------~gi~~~~ip~~D~~~~~~~~~l~~a 133 (283)
+....|+++.|.+.+.. .+...++..++++..+.. .....+.. .++....++.... .....+.+...
T Consensus 51 ~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~ 127 (249)
T COG2365 51 IPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESN--TNVELYTDHLINWDKAAIIMFESYRSFPT-REDAAERLVEL 127 (249)
T ss_pred cceeEcCCCCcccccCCccccccccccccccccccch--hhhhhhhhhhhhhccccchhhhhhccCcc-chhhHHHHHHH
Confidence 44457899999887766 667799999999986211 11112221 2222222222221 12223344444
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCCCccCH
Q 023357 134 VDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAP 192 (283)
Q Consensus 134 v~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i~~~~ 192 (283)
+..+... .++|||+||++|..|||+++++|+...++.+...+-++++..+++.....
T Consensus 128 ~~l~~~~--e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 128 LQLLADA--ENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHhhc--ccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 4433332 24899999999999999999999998777777788889888888776655
No 40
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.64 E-value=1.9e-07 Score=86.25 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhcC-CCcEEEEcCCCCChHHHHHHHHHHHhc-----cCCHHHHHHHHHhhCCCCccC
Q 023357 118 TRDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCYLVEYK-----HMAPAAALEYVRCRRPRVLLA 191 (283)
Q Consensus 118 ~~D~~~~~~~~~l~~av~~I~~~~~~-~~~VlVHC~~G~~RSgtvv~ayLm~~~-----~~~~~~A~~~vr~~Rp~i~~~ 191 (283)
++|++.+.....+.+++......... .+|++|||.+|+|||||+++.--+..+ -.+....+..+|+.|+.++++
T Consensus 260 wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqt 339 (374)
T KOG0791|consen 260 WPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQT 339 (374)
T ss_pred ccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccch
Confidence 46665332334455555555444433 589999999999999999987655432 357889999999999999999
Q ss_pred HHHHHHHHHHHHHHcccCCC
Q 023357 192 PSQWKAVQEFSQRKLAITAP 211 (283)
Q Consensus 192 ~~q~~~L~~~~~~~~~~~~~ 211 (283)
..|+-+|++--...+..+.+
T Consensus 340 e~Qyvfl~~c~~~~l~~~~~ 359 (374)
T KOG0791|consen 340 EDQYVFLHQCVLESLQGKKP 359 (374)
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 99999999998888755544
No 41
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.64 E-value=5.8e-08 Score=80.47 Aligned_cols=64 Identities=33% Similarity=0.486 Sum_probs=49.2
Q ss_pred cchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHH
Q 023357 103 SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVE 168 (283)
Q Consensus 103 ~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~ 168 (283)
....+..|+.|+.+|+.|. ..|..+.|++++.++... .++..+.+||.+|.|||+|+.+.|.|.
T Consensus 85 ~~~~~~~g~~Y~Ripitd~-~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDH-QAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TT-S---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCc-CCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3456678999999999998 599999999999999988 668899999999999999988888773
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.45 E-value=9.7e-07 Score=84.20 Aligned_cols=96 Identities=21% Similarity=0.179 Sum_probs=64.7
Q ss_pred eEEEEe-CCCCCCCCcHHHHHHHHHH-HHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHh---c---cCCHHHHHHHHHh
Q 023357 112 DHLVIP-TRDYLFAPSFVDIRRAVDF-IHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEY---K---HMAPAAALEYVRC 183 (283)
Q Consensus 112 ~~~~ip-~~D~~~~~~~~~l~~av~~-I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~---~---~~~~~~A~~~vr~ 183 (283)
.|+++. ++|.+.+.....+...+.. ........+|+.|||.+|.|||||+++.-.+.. . ..+..+.+..+|.
T Consensus 265 ~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~ 344 (415)
T KOG0789|consen 265 VHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRY 344 (415)
T ss_pred EEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 344443 3455433333334343332 122222358999999999999999997552211 2 2368899999999
Q ss_pred hCCCCccCHHHHHHHHHHHHHHcc
Q 023357 184 RRPRVLLAPSQWKAVQEFSQRKLA 207 (283)
Q Consensus 184 ~Rp~i~~~~~q~~~L~~~~~~~~~ 207 (283)
+|++++.+..|+.+++.....++.
T Consensus 345 qR~~~vqt~~Qy~f~~~~~~~~~~ 368 (415)
T KOG0789|consen 345 QRPGAVQSPLQYLFIYAATLKYIK 368 (415)
T ss_pred HhhhcccchhHHHHHHHHHHHHHH
Confidence 999999999999999988877663
No 43
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.29 E-value=1.3e-06 Score=90.24 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=55.9
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHH----Hhcc-CCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHc
Q 023357 144 GKTTYVHCKAGRGRSTTIVLCYLV----EYKH-MAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 144 ~~~VlVHC~~G~~RSgtvv~ayLm----~~~~-~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
.+|+.|||.+|.||||++|++-++ +..+ +|+.++++.+|..||+++.+.+||+++|+-..+++
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv~~~y~ 1085 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYDVALEYL 1085 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHHHHHHhh
Confidence 589999999999999999987655 3334 59999999999999999999999999999888775
No 44
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.14 E-value=6.6e-06 Score=81.32 Aligned_cols=86 Identities=23% Similarity=0.239 Sum_probs=61.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhc-CCCcEEEEcCCCCChHHHHHHHHHHHh---c---cCCHHHHHHHHHhhCCCCccC
Q 023357 119 RDYLFAPSFVDIRRAVDFIHSNSC-AGKTTYVHCKAGRGRSTTIVLCYLVEY---K---HMAPAAALEYVRCRRPRVLLA 191 (283)
Q Consensus 119 ~D~~~~~~~~~l~~av~~I~~~~~-~~~~VlVHC~~G~~RSgtvv~ayLm~~---~---~~~~~~A~~~vr~~Rp~i~~~ 191 (283)
.+.+.+.+...+.++-..++++.+ +..||+|||..|.||||+.|+.=++.. + .+++...++++|.+||+++-+
T Consensus 901 p~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaT 980 (1004)
T KOG0793|consen 901 PDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVAT 980 (1004)
T ss_pred cccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceee
Confidence 343334444445555555555543 247999999999999999776544421 2 358999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023357 192 PSQWKAVQEFSQR 204 (283)
Q Consensus 192 ~~q~~~L~~~~~~ 204 (283)
.+|.++.+..-.+
T Consensus 981 kdQFef~l~aVAe 993 (1004)
T KOG0793|consen 981 KDQFEFALTAVAE 993 (1004)
T ss_pred hhhhHHHHHHHHH
Confidence 9999988865443
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.12 E-value=3e-06 Score=87.67 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=65.2
Q ss_pred eEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhcCC----CcEEEEcCCCCChHHHHHHHHHH-----HhccCCHHHHHHHH
Q 023357 112 DHLVIP-TRDYLFAPSFVDIRRAVDFIHSNSCAG----KTTYVHCKAGRGRSTTIVLCYLV-----EYKHMAPAAALEYV 181 (283)
Q Consensus 112 ~~~~ip-~~D~~~~~~~~~l~~av~~I~~~~~~~----~~VlVHC~~G~~RSgtvv~ayLm-----~~~~~~~~~A~~~v 181 (283)
.++|+- ++|++.+.. -...+.|+++.+.-. ||++|||++|.||||++++.=-| ....++...-+..+
T Consensus 696 ~qfhFt~Wpd~gvPe~---~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~l 772 (1087)
T KOG4228|consen 696 RQFHFTAWPDHGVPET---PTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTL 772 (1087)
T ss_pred eeeeeccCCCCCCccc---chHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHH
Confidence 444443 356553322 234555666654433 89999999999999998753322 34556999999999
Q ss_pred HhhCCCCccCHHHHHHHHHHHHHH
Q 023357 182 RCRRPRVLLAPSQWKAVQEFSQRK 205 (283)
Q Consensus 182 r~~Rp~i~~~~~q~~~L~~~~~~~ 205 (283)
|.+|+.++.+.+||-++++.-.+.
T Consensus 773 R~QR~~mVQt~eQYiFi~~AllE~ 796 (1087)
T KOG4228|consen 773 RRQRNNMVQTEEQYIFIHEALLEA 796 (1087)
T ss_pred HhccccccccHHHHHHHHHHHHHH
Confidence 999999999999999988776653
No 46
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.81 E-value=0.00041 Score=67.21 Aligned_cols=135 Identities=16% Similarity=0.207 Sum_probs=96.7
Q ss_pred cccccEEEcCCCCCCChh----HHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCC--CcHHHHHHHHHH
Q 023357 63 EVDQFLLLGAVPFPKDVP----RLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFA--PSFVDIRRAVDF 136 (283)
Q Consensus 63 ~I~~~L~lG~~~~~~~~~----~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~--~~~~~l~~av~~ 136 (283)
.++.+||+|.....-... .-....+..||++.+... ... -......++++|+...-.. .....+.+++.|
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~---~~~-~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~f 366 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPT---PKE-SWPKSPKYLHLPIPSSKKGSRDLRKALPKICSF 366 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcc---ccc-ccCCCceEEeCcCCCCcccHHHHHHHHHHHHHH
Confidence 346799999987622111 112356888999986532 101 1135568889998654221 234678899999
Q ss_pred HHHHhcC--CCcEEEEcCCCCChHHHHHHHHHHHhccC----------------CHHHHHHHHHhhCCCCccCHHHHHHH
Q 023357 137 IHSNSCA--GKTTYVHCKAGRGRSTTIVLCYLVEYKHM----------------APAAALEYVRCRRPRVLLAPSQWKAV 198 (283)
Q Consensus 137 I~~~~~~--~~~VlVHC~~G~~RSgtvv~ayLm~~~~~----------------~~~~A~~~vr~~Rp~i~~~~~q~~~L 198 (283)
+...+.+ +++|+|+|..|...|..++.|.|+..... .+.+-+.++-+.+|.+.|++..++.+
T Consensus 367 v~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsV 446 (451)
T PF04179_consen 367 VRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSV 446 (451)
T ss_pred HHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9998887 89999999999999999999988876432 23445777788889999999999988
Q ss_pred HHH
Q 023357 199 QEF 201 (283)
Q Consensus 199 ~~~ 201 (283)
..|
T Consensus 447 NsF 449 (451)
T PF04179_consen 447 NSF 449 (451)
T ss_pred HHh
Confidence 877
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.41 E-value=0.0086 Score=49.08 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=44.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhcC---CCcEEEEcCCCCC--h--HHHHHHHHHHHhccCCHHHHHHHHHhhCCCC
Q 023357 119 RDYLFAPSFVDIRRAVDFIHSNSCA---GKTTYVHCKAGRG--R--STTIVLCYLVEYKHMAPAAALEYVRCRRPRV 188 (283)
Q Consensus 119 ~D~~~~~~~~~l~~av~~I~~~~~~---~~~VlVHC~~G~~--R--Sgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~i 188 (283)
.|.+ +..+.++.+.+..+++.+++ .++.+|||+.... | ++.+++||+|...+|++++|++-+...-|..
T Consensus 39 ~DFG-PlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p~~ 114 (141)
T PF14671_consen 39 ADFG-PLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQPPF 114 (141)
T ss_dssp S-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT---
T ss_pred CcCC-CccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCC
Confidence 5665 56677888888888887776 4788888887655 3 4789999999999999999999998776443
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=0.13 Score=50.85 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHH
Q 023357 133 AVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCY 165 (283)
Q Consensus 133 av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ay 165 (283)
++...++..+.+.+|||||+.|-.||+-+++..
T Consensus 363 a~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA 395 (717)
T KOG4471|consen 363 AVRIADKVESESRSVLVHCSDGWDRTAQLVSLA 395 (717)
T ss_pred HHHHHHHHhcCCceEEEEcCCCccchHHHHHHH
Confidence 344445555567899999999999999887643
No 49
>PLN02160 thiosulfate sulfurtransferase
Probab=91.24 E-value=0.36 Score=39.08 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=19.6
Q ss_pred hcCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 141 ~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
+..+++|+|||..| .||...+.. | ...|.
T Consensus 78 ~~~~~~IivyC~sG-~RS~~Aa~~-L-~~~G~ 106 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKATTE-L-VAAGY 106 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHHHHH-H-HHcCC
Confidence 35578999999999 488755433 3 34554
No 50
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=88.04 E-value=1.5 Score=33.11 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=37.4
Q ss_pred HhCCCeeEEEecCCCCCCCCcchhhh-cCce-EEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHH
Q 023357 83 KQLGVGGVITLNEPYETLVPSSLYHA-HGID-HLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTT 160 (283)
Q Consensus 83 ~~~gI~~VI~L~~~~e~~~~~~~~~~-~gi~-~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgt 160 (283)
...+-..+||+.++.| |.. +-.. ..++|+.+...... ... ..++++++|+|..|. ||..
T Consensus 16 ~~~~~~~liDvR~~~e-------~~~~~i~~~~~~ip~~~~~~~~~--~~~---------~~~~~~ivv~C~~G~-rS~~ 76 (110)
T COG0607 16 LAGEDAVLLDVREPEE-------YERGHIPGAAINIPLSELKAAEN--LLE---------LPDDDPIVVYCASGV-RSAA 76 (110)
T ss_pred hccCCCEEEeccChhH-------hhhcCCCcceeeeecccchhhhc--ccc---------cCCCCeEEEEeCCCC-ChHH
Confidence 3445667999987643 222 2223 56677765421100 000 556799999999996 8844
Q ss_pred HHHHHHH
Q 023357 161 IVLCYLV 167 (283)
Q Consensus 161 vv~ayLm 167 (283)
++.+|.
T Consensus 77 -aa~~L~ 82 (110)
T COG0607 77 -AAAALK 82 (110)
T ss_pred -HHHHHH
Confidence 444454
No 51
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=87.79 E-value=1.2 Score=42.03 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=19.0
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHH
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYL 166 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayL 166 (283)
..|..|||||..|.+||+.+++...
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~q 253 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQ 253 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHH
Confidence 5688999999999999987776433
No 52
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=86.24 E-value=1.2 Score=44.24 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=25.2
Q ss_pred HHHHHHHHHhc-CCCcEEEEcCCCCChHHHHHHH
Q 023357 132 RAVDFIHSNSC-AGKTTYVHCKAGRGRSTTIVLC 164 (283)
Q Consensus 132 ~av~~I~~~~~-~~~~VlVHC~~G~~RSgtvv~a 164 (283)
++..+|.+++. +|.+|||||..|..||..|+..
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHH
Confidence 34455666666 4589999999999999888754
No 53
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=86.07 E-value=3.8 Score=30.71 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=19.1
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
.++.+|+|+|..| .||... +.+| +..|.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGF 86 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCC
Confidence 4568999999998 588654 3344 34554
No 54
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=82.16 E-value=6.1 Score=30.58 Aligned_cols=29 Identities=21% Similarity=0.084 Sum_probs=19.5
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
..+.+|+|+|..| ++++..++..|. ..|.
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l~-~~G~ 105 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTLR-YFGH 105 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHHH-HcCC
Confidence 4568999999997 555555555444 4554
No 55
>PRK01415 hypothetical protein; Validated
Probab=81.01 E-value=2.4 Score=38.07 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=19.5
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
.++++|+++|+.|+ ||. .++.+|. .+|.
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~-kAa~~L~-~~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCE-KSTSLLK-SIGY 196 (247)
T ss_pred cCCCeEEEECCCCh-HHH-HHHHHHH-HcCC
Confidence 45789999999995 874 4455555 4554
No 56
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=80.65 E-value=7 Score=29.11 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=18.5
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
..+++|+|+|..|. ||..++ ..| +..|.
T Consensus 59 ~~~~~ivv~C~~G~-rs~~aa-~~L-~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFVA-ELL-AERGY 86 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHHH-HHH-HHcCc
Confidence 45689999999994 775433 334 34554
No 57
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=76.75 E-value=6.9 Score=36.33 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
++++|+|+|..|. ||.. ++.||. ..|.
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~-~~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMK-HEGF 196 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHH-HcCC
Confidence 4689999999995 8854 455665 3554
No 58
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=70.80 E-value=11 Score=34.77 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=54.2
Q ss_pred ccccEEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhc-
Q 023357 64 VDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSC- 142 (283)
Q Consensus 64 I~~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~- 142 (283)
|+|.-.+|....+.++..+....=+-|||..+.+|.. |-++ .+ -..|....|+++-.++.+.++
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~----------iG~F----~g-Av~p~~~tFrefP~~v~~~~~~ 169 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVA----------IGHF----EG-AVEPDIETFREFPAWVEENLDL 169 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEe----------eeee----cC-ccCCChhhhhhhHHHHHHHHHh
Confidence 6666666776666776665554447788888776621 1111 11 123445556666666665543
Q ss_pred -CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 -AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 -~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
++++|...|+.|+ |.= -..+||. ..|.
T Consensus 170 ~~~KkVvmyCTGGI-RCE-Kas~~m~-~~GF 197 (308)
T COG1054 170 LKDKKVVMYCTGGI-RCE-KASAWMK-ENGF 197 (308)
T ss_pred ccCCcEEEEcCCce-eeh-hhHHHHH-Hhcc
Confidence 4689999999999 653 3344444 4554
No 59
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=69.43 E-value=13 Score=28.15 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
++.+|+|+|..|. ||.. ++..| +..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 3579999999996 7744 33434 45555
No 60
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=68.91 E-value=29 Score=25.66 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=39.8
Q ss_pred hCCCeeEEEecCCCCCCCCcchhhhcCc-eEEEEeCCCC---CCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHH
Q 023357 84 QLGVGGVITLNEPYETLVPSSLYHAHGI-DHLVIPTRDY---LFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRST 159 (283)
Q Consensus 84 ~~gI~~VI~L~~~~e~~~~~~~~~~~gi-~~~~ip~~D~---~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSg 159 (283)
..+=..|||++...+ |....| .-+++|.... ........+............++.+|+++|..|. |+.
T Consensus 10 ~~~~~~liD~R~~~~-------~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~ 81 (113)
T PF00581_consen 10 ENESVLLIDVRSPEE-------YERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSG 81 (113)
T ss_dssp TTTTEEEEEESSHHH-------HHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHH
T ss_pred hCCCeEEEEeCCHHH-------HHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccc
Confidence 334557899976432 222222 1356666321 1122334445554545554566789999997664 666
Q ss_pred HHHHH
Q 023357 160 TIVLC 164 (283)
Q Consensus 160 tvv~a 164 (283)
..+++
T Consensus 82 ~~~~~ 86 (113)
T PF00581_consen 82 SAAAA 86 (113)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 65554
No 61
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=64.34 E-value=7.9 Score=34.73 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=56.0
Q ss_pred cEEEcCC-CCCCChhHHHhCCCeeEEEecCCCCCCCC---cchhhhcCceEEEEeCCCCCC-----CCcHHHHHHHHHHH
Q 023357 67 FLLLGAV-PFPKDVPRLKQLGVGGVITLNEPYETLVP---SSLYHAHGIDHLVIPTRDYLF-----APSFVDIRRAVDFI 137 (283)
Q Consensus 67 ~L~lG~~-~~~~~~~~L~~~gI~~VI~L~~~~e~~~~---~~~~~~~gi~~~~ip~~D~~~-----~~~~~~l~~av~~I 137 (283)
.+..|++ ....-...++++||+.|||.+.++-.... ...+++.||.|+.+--+.... .-....+.++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 5788998 44455567788999999999987532111 245678899999986433221 11245677888777
Q ss_pred HHHhcCCCcEEEEcCCCC
Q 023357 138 HSNSCAGKTTYVHCKAGR 155 (283)
Q Consensus 138 ~~~~~~~~~VlVHC~~G~ 155 (283)
.+. .+++|++ +.|.
T Consensus 126 ~~~--~~~~ifl--ttGs 139 (249)
T PF02571_consen 126 KEL--GGGRIFL--TTGS 139 (249)
T ss_pred hhc--CCCCEEE--eCch
Confidence 554 3378887 4553
No 62
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=63.25 E-value=19 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=20.5
Q ss_pred hcCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 141 ~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
+.++.+|+|.|..|-.||..++ ++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 4557899999985445776444 66666665
No 63
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=61.24 E-value=42 Score=26.24 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=27.0
Q ss_pred hHHHhCCCeeEEEecCCCC-C--CCCc----chhhhcCceEEEEeCC
Q 023357 80 PRLKQLGVGGVITLNEPYE-T--LVPS----SLYHAHGIDHLVIPTR 119 (283)
Q Consensus 80 ~~L~~~gI~~VI~L~~~~e-~--~~~~----~~~~~~gi~~~~ip~~ 119 (283)
+.|++.||+.|||+..--. . .+.. ......||.|+++|..
T Consensus 7 ~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~L 53 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPEL 53 (122)
T ss_pred HHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhh
Confidence 4688999999999864311 1 1121 2355689999999863
No 64
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=60.46 E-value=19 Score=29.91 Aligned_cols=29 Identities=10% Similarity=-0.176 Sum_probs=20.1
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
.++.+|+|.|..|..||.. ++++++..|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCC
Confidence 3568999999998767765 4445444553
No 65
>PRK05320 rhodanese superfamily protein; Provisional
Probab=57.31 E-value=22 Score=32.05 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
++++|+++|..|. ||.. ++.+|. ..|.
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~-~~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQ-EVGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHH-HcCC
Confidence 4789999999995 7755 455565 3554
No 66
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=55.99 E-value=22 Score=27.56 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=15.7
Q ss_pred hcCCCcEEEEcCCCCChHHHHH
Q 023357 141 SCAGKTTYVHCKAGRGRSTTIV 162 (283)
Q Consensus 141 ~~~~~~VlVHC~~G~~RSgtvv 162 (283)
...+.+|+|+|..|. ||...+
T Consensus 61 ~~~~~~ivv~C~~G~-rs~~aa 81 (117)
T cd01522 61 VGKDRPVLLLCRSGN-RSIAAA 81 (117)
T ss_pred CCCCCeEEEEcCCCc-cHHHHH
Confidence 345789999999984 776543
No 67
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=55.66 E-value=9.3 Score=34.28 Aligned_cols=83 Identities=20% Similarity=0.271 Sum_probs=53.4
Q ss_pred cEEEcCC-CCCCChhHHHhCCCeeEEEecCCCCCCCC---cchhhhcCceEEEEeCCCCC-----CCCcHHHHHHHHHHH
Q 023357 67 FLLLGAV-PFPKDVPRLKQLGVGGVITLNEPYETLVP---SSLYHAHGIDHLVIPTRDYL-----FAPSFVDIRRAVDFI 137 (283)
Q Consensus 67 ~L~lG~~-~~~~~~~~L~~~gI~~VI~L~~~~e~~~~---~~~~~~~gi~~~~ip~~D~~-----~~~~~~~l~~av~~I 137 (283)
.+..|++ ....-...+++++|+.|||.+.++-.... ...+++.||.|+.+--+... .--....+.++++.+
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHh
Confidence 4778888 44445567788999999999987532111 24577889999998643211 011134577777776
Q ss_pred HHHhcCCCcEEEEcCCCC
Q 023357 138 HSNSCAGKTTYVHCKAGR 155 (283)
Q Consensus 138 ~~~~~~~~~VlVHC~~G~ 155 (283)
.+. ++||. +.|.
T Consensus 125 ~~~----~~vll--ttGs 136 (248)
T PRK08057 125 APF----RRVLL--TTGR 136 (248)
T ss_pred hcc----CCEEE--ecCc
Confidence 543 56777 4564
No 68
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=55.25 E-value=11 Score=35.76 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 145 KTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 145 ~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
.+|+|||..|. ||... +.+|. ..|.
T Consensus 333 ~~Ivv~C~sG~-RS~~A-a~~L~-~~G~ 357 (370)
T PRK05600 333 DNVVVYCASGI-RSADF-IEKYS-HLGH 357 (370)
T ss_pred CcEEEECCCCh-hHHHH-HHHHH-HcCC
Confidence 38999999995 88654 45454 3444
No 69
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=51.98 E-value=28 Score=25.87 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=18.1
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
++.+|+++|..| .||... +.+|.+ .|.
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~ 83 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGF 83 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCC
Confidence 468999999998 477544 444443 454
No 70
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=51.67 E-value=20 Score=32.53 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=29.0
Q ss_pred chhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 023357 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCK 152 (283)
Q Consensus 104 ~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~ 152 (283)
..|++.|++|+. |+..++ +.+.++.++...+-.+||+||..
T Consensus 229 ~lFe~LG~~Y~G-PiDGHd-------l~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYIG-PIDGHD-------LEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEEE-EEETT--------HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEEe-ccCCCC-------HHHHHHHHHHHhcCCCCEEEEEe
Confidence 678889999884 555543 56666677777667899999963
No 71
>PRK05569 flavodoxin; Provisional
Probab=49.69 E-value=1.3e+02 Score=23.72 Aligned_cols=92 Identities=8% Similarity=-0.033 Sum_probs=52.4
Q ss_pred hcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCC-hHHHHHHHHHHHhccCCHHHHHHHHHhhCC
Q 023357 108 AHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRG-RSTTIVLCYLVEYKHMAPAAALEYVRCRRP 186 (283)
Q Consensus 108 ~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~-RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp 186 (283)
....-.+..|+......+ ...+..+++.+....-+|+++.+-++.|.+ ..+.-.+.-.+...|+.....+..
T Consensus 48 ~~d~iilgsPty~~~~~~-~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~------ 120 (141)
T PRK05569 48 EADAVAFGSPSMDNNNIE-QEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAV------ 120 (141)
T ss_pred hCCEEEEECCCcCCCcCC-hHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEE------
Confidence 345556667775543222 234555555554433357899999998865 233222333444556544322111
Q ss_pred CCccCHHHHHHHHHHHHHHc
Q 023357 187 RVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 187 ~i~~~~~q~~~L~~~~~~~~ 206 (283)
...|+...++.+++|-+++.
T Consensus 121 ~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 121 NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred ccCCCHHHHHHHHHHHHHHh
Confidence 23478888999999887764
No 72
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=47.23 E-value=24 Score=23.78 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=19.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhh
Q 023357 160 TIVLCYLVEYKHMAPAAALEYVRCR 184 (283)
Q Consensus 160 tvv~ayLm~~~~~~~~~A~~~vr~~ 184 (283)
.-+...||...|++..+|+..++..
T Consensus 16 ~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 16 EQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 3456789999999999999999864
No 73
>PF15040 Humanin: Humanin family; PDB: 2GD3_A 1Y32_A.
Probab=44.74 E-value=7.3 Score=21.61 Aligned_cols=11 Identities=27% Similarity=0.470 Sum_probs=7.9
Q ss_pred hhhhhhhhccc
Q 023357 253 MMARLSCLFAS 263 (283)
Q Consensus 253 ~~~~~~~~~~~ 263 (283)
+.+.|||+++.
T Consensus 2 a~rGFsCLlL~ 12 (24)
T PF15040_consen 2 ATRGFSCLLLL 12 (24)
T ss_dssp --HHHHHHHHH
T ss_pred CCCccEEEEEE
Confidence 46899999984
No 74
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=44.43 E-value=34 Score=34.59 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=33.7
Q ss_pred CCcchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 023357 101 VPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRG 156 (283)
Q Consensus 101 ~~~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~ 156 (283)
.|...|++.|++|+ -|++.++ +.+.+..++..++.++||+||...=.|
T Consensus 234 ~~~~lFeelGf~Yi-GPiDGHn-------i~~Li~~Lk~~kd~~gPvllHv~T~KG 281 (627)
T COG1154 234 VPGTLFEELGFNYI-GPIDGHN-------LEELIPTLKNAKDLKGPVLLHVVTKKG 281 (627)
T ss_pred CchhhHHHhCCeeE-CCcCCCC-------HHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 34467888999987 4565553 556666677776778999999974333
No 75
>PRK09875 putative hydrolase; Provisional
Probab=44.33 E-value=1.3e+02 Score=27.51 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=14.7
Q ss_pred ChhHHHhCCCeeEEEecCC
Q 023357 78 DVPRLKQLGVGGVITLNEP 96 (283)
Q Consensus 78 ~~~~L~~~gI~~VI~L~~~ 96 (283)
.+..+++.|+++||+++..
T Consensus 39 el~~~~~~Gg~tiVd~T~~ 57 (292)
T PRK09875 39 EMNDLMTRGVRNVIEMTNR 57 (292)
T ss_pred HHHHHHHhCCCeEEecCCC
Confidence 4566788999999998854
No 76
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=43.83 E-value=31 Score=25.58 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=17.9
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
++.+|+|+|..|. ||..+ ++++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~~--~~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKAA--AELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHHH--HHHHHHcCC
Confidence 4679999999985 66443 344445554
No 77
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=43.37 E-value=38 Score=24.74 Aligned_cols=29 Identities=10% Similarity=-0.086 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
.+.+|+|+|..|...++..++..| +..|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCc
Confidence 367999999998533344444444 34443
No 78
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=42.38 E-value=2.3e+02 Score=24.68 Aligned_cols=117 Identities=8% Similarity=0.018 Sum_probs=67.1
Q ss_pred hhHHHhCCCeeEEEecCCCCCCCC-------cchhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEc
Q 023357 79 VPRLKQLGVGGVITLNEPYETLVP-------SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHC 151 (283)
Q Consensus 79 ~~~L~~~gI~~VI~L~~~~e~~~~-------~~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC 151 (283)
++..++.|+...+++..-.....+ .....+.|...+.++.... ..+.+++.+.+..+.+.... .++-+||
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G--~~~P~~v~~li~~l~~~~~~-~~~~~H~ 197 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG--LATPEEVAELVKALREALPD-VPLGLHT 197 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC--CcCHHHHHHHHHHHHHhCCC-CeEEEEe
Confidence 345588999999999543320011 1234457888777665432 45567788888888876543 7889998
Q ss_pred CCCCChHHHHH-HHHHH--------------HhccCCHHHHHHHHHhhCCCCccCHHHHHHH
Q 023357 152 KAGRGRSTTIV-LCYLV--------------EYKHMAPAAALEYVRCRRPRVLLAPSQWKAV 198 (283)
Q Consensus 152 ~~G~~RSgtvv-~ayLm--------------~~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L 198 (283)
..-.|=..+-+ +|+.. ..++.+.++.+..++.+-.....+...+..+
T Consensus 198 Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~ 259 (265)
T cd03174 198 HNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEI 259 (265)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 76655332222 22111 1134577777777777643333344444333
No 79
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=41.96 E-value=30 Score=31.25 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHHHhccCCHHHHHHH
Q 023357 152 KAGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (283)
Q Consensus 152 ~~G~~RSgtvv~ayLm~~~~~~~~~A~~~ 180 (283)
--|.||||+-+++-++ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 3599999999888777 78888888665
No 80
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=41.95 E-value=32 Score=25.21 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 144 ~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
+.+|+++|..|. ||.. ++.+| +..|.
T Consensus 56 ~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 56 GARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 579999999985 7754 34444 44554
No 81
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=41.92 E-value=62 Score=27.85 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHH
Q 023357 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLV 167 (283)
Q Consensus 128 ~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm 167 (283)
+.+.++++.+.+.+.++++|++. |.|+|+.++..+-+
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 56888899999988889999986 88889887765544
No 82
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=41.57 E-value=57 Score=28.39 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHh
Q 023357 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEY 169 (283)
Q Consensus 128 ~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~ 169 (283)
+.|.++++.|-++ .++|+|- |.||||.+.=++-|+.
T Consensus 26 ~~~~~a~~~i~~~---~gkv~V~---G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 26 EDFVRAVELILEC---KGKVFVT---GVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHHHhc---CCcEEEE---cCChhHHHHHHHHHHH
Confidence 4566666666654 5788885 9999999987766654
No 83
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=40.24 E-value=50 Score=30.32 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.8
Q ss_pred cEEEEcCCCCChHHHHHH
Q 023357 146 TTYVHCKAGRGRSTTIVL 163 (283)
Q Consensus 146 ~VlVHC~~G~~RSgtvv~ 163 (283)
.|-|=|+.|..||.+++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 688999999999988873
No 84
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=39.83 E-value=45 Score=33.94 Aligned_cols=46 Identities=9% Similarity=0.328 Sum_probs=28.5
Q ss_pred chhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 023357 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGR 157 (283)
Q Consensus 104 ~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~R 157 (283)
..|++.|++|+. |++.++ .+.+.+++ +.....++|++|||..=.|+
T Consensus 232 ~~f~~~G~~~~~-~vDGhd----~~~l~~al---~~ak~~~~P~~i~~~T~KGk 277 (617)
T TIGR00204 232 TFFEELGFNYIG-PVDGHD----LLELIETL---KNAKKLKGPVFLHIQTKKGK 277 (617)
T ss_pred chHHHcCCcEEc-ccCCCC----HHHHHHHH---HHHhcCCCCEEEEEEecCCC
Confidence 358889998886 664443 33444444 44444467999999844443
No 85
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=39.26 E-value=2.6e+02 Score=24.40 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=40.5
Q ss_pred hhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeCCCCC----CCCcHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 023357 79 VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYL----FAPSFVDIRRAVDFIHSNSCAGKTTYVHCKA 153 (283)
Q Consensus 79 ~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~~D~~----~~~~~~~l~~av~~I~~~~~~~~~VlVHC~~ 153 (283)
.+.|+++||..|++-........+.......++.|+.+--.... ..-+.+.+.+.++.|.+...+++.|+|-...
T Consensus 135 ~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN 213 (230)
T PF01904_consen 135 FELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNN 213 (230)
T ss_dssp HHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-S
T ss_pred HHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 56788999999987766522111111111136777777654422 2234678899999999988877777776554
No 86
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=38.88 E-value=37 Score=24.92 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=18.4
Q ss_pred hcCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 141 ~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
+..+.+|+|+|..| .||.. + ++.+...|.
T Consensus 58 ~~~~~~ivv~c~~g-~~s~~-~-~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSAL-A-GKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCC-CcHHH-H-HHHHHHcCh
Confidence 34568999999887 47643 3 344444443
No 87
>smart00400 ZnF_CHCC zinc finger.
Probab=37.73 E-value=37 Score=22.63 Aligned_cols=32 Identities=19% Similarity=0.580 Sum_probs=22.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHH
Q 023357 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYV 181 (283)
Q Consensus 148 lVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~v 181 (283)
..||.+ -|+.|-+ +-++|+..+++..+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 467774 3556665 4456778899999999876
No 88
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=37.72 E-value=19 Score=27.52 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=9.2
Q ss_pred CCcEEEEcCCC
Q 023357 144 GKTTYVHCKAG 154 (283)
Q Consensus 144 ~~~VlVHC~~G 154 (283)
..++||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 36899999877
No 89
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=37.48 E-value=40 Score=24.67 Aligned_cols=28 Identities=7% Similarity=-0.161 Sum_probs=18.4
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
..+.+|+|+|..| +||+.+ +.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH-HHcCC
Confidence 4568999999877 577554 4445 34554
No 90
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=37.38 E-value=38 Score=26.47 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=16.7
Q ss_pred cCCCcEEEEcC-CCCChHHHHHHHHHHH
Q 023357 142 CAGKTTYVHCK-AGRGRSTTIVLCYLVE 168 (283)
Q Consensus 142 ~~~~~VlVHC~-~G~~RSgtvv~ayLm~ 168 (283)
.+..+|+|||. .| .||+. ++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 45689999997 66 57655 4445553
No 91
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=37.14 E-value=44 Score=24.56 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=16.6
Q ss_pred hcCCCcEEEEcCCCCChHHHHHHHHHH
Q 023357 141 SCAGKTTYVHCKAGRGRSTTIVLCYLV 167 (283)
Q Consensus 141 ~~~~~~VlVHC~~G~~RSgtvv~ayLm 167 (283)
+..+.+|+|+|..|. ||.. ++..|.
T Consensus 51 ~~~~~~iv~~c~~g~-~s~~-~~~~L~ 75 (99)
T cd01527 51 LVGANAIIFHCRSGM-RTQQ-NAERLA 75 (99)
T ss_pred CCCCCcEEEEeCCCc-hHHH-HHHHHH
Confidence 345689999999985 6554 344444
No 92
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=37.10 E-value=77 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=14.7
Q ss_pred cCCCcEEEEcCCCCChHHHHHH
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVL 163 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ 163 (283)
..+.+|+|||..+-.|+...+.
T Consensus 60 ~~~~~iv~yC~~~~~r~~~aa~ 81 (113)
T cd01531 60 SKKDTVVFHCALSQVRGPSAAR 81 (113)
T ss_pred CCCCeEEEEeecCCcchHHHHH
Confidence 3457999999844457765543
No 93
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=36.94 E-value=70 Score=25.98 Aligned_cols=75 Identities=21% Similarity=0.125 Sum_probs=37.3
Q ss_pred hhHHHhCCCeeEEEecCCCCCCCCcchhhhcCc-eEEEEeCCCCCC--CCcHHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 023357 79 VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGI-DHLVIPTRDYLF--APSFVDIRRAVDFIHSNSCAGKTTYVHCKAGR 155 (283)
Q Consensus 79 ~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi-~~~~ip~~D~~~--~~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~ 155 (283)
...|-+.|=...||++++.|. ..-++ .-++||..-... .-..+.|...+.+... .....|+++|+.|.
T Consensus 30 vk~L~~~~~~~llDVRepeEf-------k~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp--~~d~eiIf~C~SG~ 100 (136)
T KOG1530|consen 30 VKNLLQHPDVVLLDVREPEEF-------KQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKP--PHDKEIIFGCASGV 100 (136)
T ss_pred HHHHhcCCCEEEEeecCHHHh-------hccCCcceEeccccccccccccCCHHHHHHhcccCC--CCCCcEEEEeccCc
Confidence 334445555677888765442 11121 345666522211 1112334333332221 12358999999996
Q ss_pred ChHHHHHH
Q 023357 156 GRSTTIVL 163 (283)
Q Consensus 156 ~RSgtvv~ 163 (283)
||.+..-
T Consensus 101 -Rs~~A~~ 107 (136)
T KOG1530|consen 101 -RSLKATK 107 (136)
T ss_pred -chhHHHH
Confidence 8865443
No 94
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=36.81 E-value=83 Score=22.65 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=17.6
Q ss_pred hcCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 141 ~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
...+.+|+|+|..|. ||.. ++. .++..|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~-a~~-~l~~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ-LAQ-ALREAGF 81 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH-HHH-HHHHcCC
Confidence 346789999999664 5544 333 3334443
No 95
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=36.70 E-value=25 Score=31.65 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred EEEcCCCCCCChhHHHhCCCeeEEEecCCCCCCCC---cchhhhcCceEEEE---eCCCCCCCCcHHHHHHHHHHHHHHh
Q 023357 68 LLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVP---SSLYHAHGIDHLVI---PTRDYLFAPSFVDIRRAVDFIHSNS 141 (283)
Q Consensus 68 L~lG~~~~~~~~~~L~~~gI~~VI~L~~~~e~~~~---~~~~~~~gi~~~~i---p~~D~~~~~~~~~l~~av~~I~~~~ 141 (283)
+..|.+....-...+++.+|+.|||.+.++-.... ...+++.||.|+.+ ++.+.........+.++++.+....
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~ 126 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPY 126 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhcc
Q ss_pred cCCCcEEE
Q 023357 142 CAGKTTYV 149 (283)
Q Consensus 142 ~~~~~VlV 149 (283)
..+++|+.
T Consensus 127 ~~~~~i~l 134 (256)
T TIGR00715 127 LRGKRVFL 134 (256)
T ss_pred ccCCcEEE
No 96
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=36.66 E-value=71 Score=24.42 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=13.9
Q ss_pred CCCcEEEEcCCCCChHHHHH
Q 023357 143 AGKTTYVHCKAGRGRSTTIV 162 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv 162 (283)
.+.+|+|+|..| .||...+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH
Confidence 357899999988 4665553
No 97
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=36.20 E-value=36 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHH
Q 023357 153 AGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (283)
Q Consensus 153 ~G~~RSgtvv~ayLm~~~~~~~~~A~~~ 180 (283)
-|.||||+-+.+-|+ .|++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 499999988887776 68888888665
No 98
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=36.16 E-value=42 Score=26.02 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=18.3
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
..+++|+|+|..|. ||...+ .+| +..|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~~L-~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-RKL-KELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-HHH-HHcCC
Confidence 45689999999995 875333 333 34554
No 99
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=35.90 E-value=38 Score=30.55 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHH
Q 023357 153 AGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (283)
Q Consensus 153 ~G~~RSgtvv~ayLm~~~~~~~~~A~~~ 180 (283)
-|.||||+-+.+-|+ .|++.++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 499999988888776 78888888665
No 100
>PRK13938 phosphoheptose isomerase; Provisional
Probab=34.86 E-value=95 Score=26.69 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHH
Q 023357 125 PSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVE 168 (283)
Q Consensus 125 ~~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~ 168 (283)
...+.+.++.+.+.+.+.++++|++. |.|+|+.++...-.+
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 34566788888888888899999986 888888877665554
No 101
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=34.82 E-value=63 Score=29.47 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.7
Q ss_pred cEEEEcCCCCChHHHHHH
Q 023357 146 TTYVHCKAGRGRSTTIVL 163 (283)
Q Consensus 146 ~VlVHC~~G~~RSgtvv~ 163 (283)
.|-|=|+.|..||.+++=
T Consensus 245 TIaIGCTGGqHRSV~iae 262 (286)
T COG1660 245 TIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred EEEEccCCCccchHHHHH
Confidence 578899999999998873
No 102
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=34.42 E-value=42 Score=30.48 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHH
Q 023357 153 AGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (283)
Q Consensus 153 ~G~~RSgtvv~ayLm~~~~~~~~~A~~~ 180 (283)
-|.||||+-+.+-|+ .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999988888776 78888888665
No 103
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=34.27 E-value=67 Score=29.42 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.5
Q ss_pred cEEEEcCCCCChHHHHHH
Q 023357 146 TTYVHCKAGRGRSTTIVL 163 (283)
Q Consensus 146 ~VlVHC~~G~~RSgtvv~ 163 (283)
.|-|=|+.|..||.+++=
T Consensus 247 ~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred EEEEecCCCcccHHHHHH
Confidence 588899999999988763
No 104
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=34.10 E-value=58 Score=24.06 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 144 ~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
+.+|+|+|..|. ||+.++. . +...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~-~-L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA-F-LVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH-H-HHHcCC
Confidence 579999999986 7755433 3 334444
No 105
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=34.03 E-value=88 Score=23.70 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCChHHHHH
Q 023357 144 GKTTYVHCKAGRGRSTTIV 162 (283)
Q Consensus 144 ~~~VlVHC~~G~~RSgtvv 162 (283)
..+|++||..|..||...+
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 4689999998656776543
No 106
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=32.55 E-value=40 Score=25.43 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCCChHHHHH
Q 023357 144 GKTTYVHCKAGRGRSTTIV 162 (283)
Q Consensus 144 ~~~VlVHC~~G~~RSgtvv 162 (283)
..+||+-|.+|.+ |+.++
T Consensus 3 ~~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLV 20 (95)
T ss_pred ccEEEEECCCchh-HHHHH
Confidence 3689999999998 55444
No 107
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=32.43 E-value=1.2e+02 Score=24.12 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHH
Q 023357 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLC 164 (283)
Q Consensus 127 ~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~a 164 (283)
.+.+.++.+.+.+.+.+|++|++. |.|-|+.++..
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a~~ 52 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIASH 52 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHHHH
Confidence 467888999999999999888885 55557666543
No 108
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=32.21 E-value=70 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHH
Q 023357 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTT 160 (283)
Q Consensus 127 ~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgt 160 (283)
.+.+.++.+.|-+++.+|++|+++ |.|+|+.
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 456778888888888999999885 6666755
No 109
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=31.83 E-value=37 Score=30.65 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=17.5
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
..+++|+++|..|. |+ ++++.+| +..|.
T Consensus 229 ~~~~~ii~yC~~G~-~A-~~~~~~l-~~~G~ 256 (281)
T PRK11493 229 SFDRPIIASCGSGV-TA-AVVVLAL-ATLDV 256 (281)
T ss_pred CCCCCEEEECCcHH-HH-HHHHHHH-HHcCC
Confidence 44679999998886 55 4444434 34444
No 110
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=30.90 E-value=58 Score=24.71 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=17.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
.+.+|+|+|..|. ||...+ ..|. ..|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~aa-~~L~-~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMAK-DILL-DMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHHH-HHHH-HcCC
Confidence 4578999999994 775553 3333 3443
No 111
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=30.53 E-value=1.1e+02 Score=26.13 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHH
Q 023357 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIV 162 (283)
Q Consensus 127 ~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv 162 (283)
.+.+.++++.|.+++.++++|++. |.|.|+.++
T Consensus 27 ~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A 59 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDA 59 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 467999999999999999999886 666676644
No 112
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=30.03 E-value=79 Score=32.80 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=30.2
Q ss_pred chhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCC--CcEEEEcCCCCCh
Q 023357 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAG--KTTYVHCKAGRGR 157 (283)
Q Consensus 104 ~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~--~~VlVHC~~G~~R 157 (283)
..|++.|++|+ -|++.++ +.+.+..+++..+.+ +||+||-..-.|+
T Consensus 320 ~lFe~lG~~Y~-GpvDGHd-------i~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYI-GPVDGHN-------IEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEE-CccCCCC-------HHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 57888999887 4565553 444455555554444 8999998755544
No 113
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=30.00 E-value=75 Score=23.99 Aligned_cols=30 Identities=13% Similarity=-0.037 Sum_probs=18.3
Q ss_pred hcCCCcEEEEcCCCCC-hHHHHHHHHHHHhccC
Q 023357 141 SCAGKTTYVHCKAGRG-RSTTIVLCYLVEYKHM 172 (283)
Q Consensus 141 ~~~~~~VlVHC~~G~~-RSgtvv~ayLm~~~~~ 172 (283)
+..+.+|+|+|..|.. ||.. ++. .++..|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~-~a~-~l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATK-AAL-KLAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchHHH-HHH-HHHHcCC
Confidence 3457899999998863 4443 333 3334554
No 114
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=29.31 E-value=1.2e+02 Score=28.11 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
.+..|+|+|..|-.||..++ ++++..|.
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa--~~L~~~G~ 100 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLA--WLLAQIGF 100 (311)
T ss_pred CCCcEEEEECCCChHHHHHH--HHHHHcCC
Confidence 34459999975546887654 33444554
No 115
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=29.12 E-value=58 Score=23.78 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCChHHHHHHHHH
Q 023357 145 KTTYVHCKAGRGRSTTIVLCYL 166 (283)
Q Consensus 145 ~~VlVHC~~G~~RSgtvv~ayL 166 (283)
++|++.|.+|.| |++++..-+
T Consensus 1 ~kilvvCg~G~g-tS~ml~~ki 21 (87)
T cd05567 1 KKIVFACDAGMG-SSAMGASVL 21 (87)
T ss_pred CEEEEECCCCcc-HHHHHHHHH
Confidence 369999999998 445544433
No 116
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=29.07 E-value=57 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=18.2
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
..+.+|+|+|..|. ||..+ ++.++..|.
T Consensus 76 ~~~~~iv~yc~~g~-~s~~~--~~~l~~~G~ 103 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACVL--LLALELLGY 103 (118)
T ss_pred CCCCCEEEECCcHH-HHHHH--HHHHHHcCC
Confidence 35689999999874 66543 334445554
No 117
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=28.80 E-value=86 Score=25.24 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCC
Q 023357 130 IRRAVDFIHSNSCAGKTTYVHCKA 153 (283)
Q Consensus 130 l~~av~~I~~~~~~~~~VlVHC~~ 153 (283)
..-++..+++..++|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 456678888888999999999954
No 118
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=26.79 E-value=1.5e+02 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
++.+|+|+|..|-.||+.++ +++...|.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 56899999976656988764 33444554
No 119
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.57 E-value=1.4e+02 Score=19.44 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhccC--CHHHHHHHHHhhCCCCccCHHHHHHHH
Q 023357 158 STTIVLCYLVEYKHM--APAAALEYVRCRRPRVLLAPSQWKAVQ 199 (283)
Q Consensus 158 Sgtvv~ayLm~~~~~--~~~~A~~~vr~~Rp~i~~~~~q~~~L~ 199 (283)
+||+-+....+..|. ...++++.+ .+.+..+++..++.+.
T Consensus 3 ~GTlGiL~~Ak~~GlI~~~~~~l~~l--~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 3 TGTLGILLLAKRRGLISEVKPLLDRL--QQAGFRISPKLIEEIL 44 (48)
T ss_pred eehHHHHHHHHHcCChhhHHHHHHHH--HHcCcccCHHHHHHHH
Confidence 467778888888887 477777777 4556777877776654
No 120
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=25.94 E-value=1.1e+02 Score=28.58 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=26.6
Q ss_pred cCCCCChHHHHHHHHHHHhccCCHHHHHHHHHh
Q 023357 151 CKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRC 183 (283)
Q Consensus 151 C~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~ 183 (283)
++.|.+|. +.=++.+++.+.||-++|++.|+.
T Consensus 283 ~KfG~~~~-~~~~s~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 283 LKFGFGRA-TDHASIDIRSGRITREEAIELVKE 314 (343)
T ss_pred hhcCCCcC-chHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899876 455666888899999999999998
No 121
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=25.90 E-value=1.8e+02 Score=21.64 Aligned_cols=28 Identities=14% Similarity=0.104 Sum_probs=17.6
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
..+.+++|+|..|. ||.. ++. .++..|.
T Consensus 56 ~~~~~ivv~c~~g~-~s~~-a~~-~L~~~G~ 83 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQG-AAQ-YLLQQGF 83 (108)
T ss_pred CCCCCEEEEeCCCC-CHHH-HHH-HHHHCCc
Confidence 45689999999885 6543 333 3334554
No 122
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=25.49 E-value=73 Score=24.00 Aligned_cols=36 Identities=11% Similarity=0.327 Sum_probs=23.8
Q ss_pred EEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhC
Q 023357 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRR 185 (283)
Q Consensus 148 lVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~R 185 (283)
.-||.+ -|.+|-++ .++|...+++..+|++++.+.-
T Consensus 54 ~~~Cf~-Cg~~Gd~i-~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGDVI-DFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE-HH-HHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCcHH-hHHHHHhCCCHHHHHHHHHHHh
Confidence 678884 56777664 4468889999999999997643
No 123
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=25.39 E-value=2.5e+02 Score=27.19 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=54.8
Q ss_pred HhCCCeeEEEecCCCCCCCC-cchhhhcCceEEEEeCCCC----CCCCcHHHHHHHHHHHHHHhcCC-CcEEEEcCC---
Q 023357 83 KQLGVGGVITLNEPYETLVP-SSLYHAHGIDHLVIPTRDY----LFAPSFVDIRRAVDFIHSNSCAG-KTTYVHCKA--- 153 (283)
Q Consensus 83 ~~~gI~~VI~L~~~~e~~~~-~~~~~~~gi~~~~ip~~D~----~~~~~~~~l~~av~~I~~~~~~~-~~VlVHC~~--- 153 (283)
.++|..+|-+|......... ....+...+-.=.+|+-+. ......-.-+.+.+.|+++.++| .-+.|||.-
T Consensus 86 ~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~~ 165 (420)
T PF01964_consen 86 EKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGITRE 165 (420)
T ss_dssp HHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--GG
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchhHH
Confidence 46899999999875432000 1112222333333443110 00111112345666677776666 679999961
Q ss_pred -------------CCChHHHHHHHHHHHhccCC-----HHHHHHHHHh----------hCCCCccCHHHHHHHH
Q 023357 154 -------------GRGRSTTIVLCYLVEYKHMA-----PAAALEYVRC----------RRPRVLLAPSQWKAVQ 199 (283)
Q Consensus 154 -------------G~~RSgtvv~ayLm~~~~~~-----~~~A~~~vr~----------~Rp~i~~~~~q~~~L~ 199 (283)
=+||-|++.++|++.....+ +++.++..|. .||+......-..|+.
T Consensus 166 ~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~ 239 (420)
T PF01964_consen 166 TLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQ 239 (420)
T ss_dssp GGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHH
T ss_pred HHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHH
Confidence 25799999999999876654 3455555553 6788876543333333
No 124
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=25.21 E-value=2e+02 Score=19.01 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHhccCCHHHHHHHHHhhC
Q 023357 154 GRGRSTTIVLCYLVEYKHMAPAAALEYVRCRR 185 (283)
Q Consensus 154 G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~R 185 (283)
|.+|...-++.-|+ ..|++++.-.+.++..|
T Consensus 18 gLd~etL~ici~L~-e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 18 GLDRETLSICIELC-ENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHHHhC
Confidence 88988655555555 79999997666666654
No 125
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=25.07 E-value=1.7e+02 Score=26.94 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCcE--EEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHhhCCC
Q 023357 133 AVDFIHSNSCAGKTT--YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPR 187 (283)
Q Consensus 133 av~~I~~~~~~~~~V--lVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~~Rp~ 187 (283)
+++.|++.. |.++ +++..+|-| +|.++++.+.. |+++++..+...+.-..
T Consensus 17 vL~~le~~~--g~~i~~~fD~i~GTS-tGgiIA~~la~--g~s~~e~~~~y~~~~~~ 68 (312)
T cd07212 17 MLIAIEKAL--GRPIRELFDWIAGTS-TGGILALALLH--GKSLREARRLYLRMKDR 68 (312)
T ss_pred HHHHHHHHh--CCCchhhccEEEeeC-hHHHHHHHHHc--CCCHHHHHHHHHHhhhh
Confidence 334444432 5565 588888987 67777776663 89999998886655433
No 126
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=24.82 E-value=37 Score=25.36 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.9
Q ss_pred CCCcccccccEEEcCCCCC
Q 023357 58 FRWWDEVDQFLLLGAVPFP 76 (283)
Q Consensus 58 ~~~~~~I~~~L~lG~~~~~ 76 (283)
.+|+-+|.+++|+|+....
T Consensus 18 trwl~Ei~~GVyVg~~s~r 36 (86)
T PF09707_consen 18 TRWLLEIRPGVYVGNVSAR 36 (86)
T ss_pred hheeEecCCCcEEcCCCHH
Confidence 4688999999999977653
No 127
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=24.08 E-value=1.8e+02 Score=22.89 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHhccC--------CH-HHHHHHHHhhCCCCc-------cC
Q 023357 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM--------AP-AAALEYVRCRRPRVL-------LA 191 (283)
Q Consensus 128 ~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~--------~~-~~A~~~vr~~Rp~i~-------~~ 191 (283)
..+.++.+.+.+....+.||+|....|.|++-. |-|+....+- +. ....+.+....++.. ++
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~--A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLL--ARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDRLS 82 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH--HHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCCS-
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH--HHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHHCC
Confidence 346677777888878889999999999999863 4444432210 10 011344445555443 34
Q ss_pred HHHHHHHHHHHHH
Q 023357 192 PSQWKAVQEFSQR 204 (283)
Q Consensus 192 ~~q~~~L~~~~~~ 204 (283)
+.....|..+-++
T Consensus 83 ~~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 83 PEAQRRLLDLLKR 95 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666666655
No 128
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=23.89 E-value=74 Score=26.17 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCCcEEEEcCC
Q 023357 132 RAVDFIHSNSCAGKTTYVHCKA 153 (283)
Q Consensus 132 ~av~~I~~~~~~~~~VlVHC~~ 153 (283)
-++.++.++...|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 6788899999999999999953
No 129
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.42 E-value=5.4e+02 Score=23.06 Aligned_cols=122 Identities=10% Similarity=0.014 Sum_probs=68.9
Q ss_pred hHHHhCCCeeEEEecCCCCCCCCc-------chhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 023357 80 PRLKQLGVGGVITLNEPYETLVPS-------SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCK 152 (283)
Q Consensus 80 ~~L~~~gI~~VI~L~~~~e~~~~~-------~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC~ 152 (283)
+..++.|....+++....-...+. ....+.|...+.+...-. .-...++.+.+..+.+... .++-+||.
T Consensus 125 ~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G--~~~P~~v~~lv~~l~~~~~--~~l~~H~H 200 (275)
T cd07937 125 KAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG--LLTPYAAYELVKALKKEVG--LPIHLHTH 200 (275)
T ss_pred HHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCHHHHHHHHHHHHHhCC--CeEEEEec
Confidence 455778988777664221111221 123456888777765443 3345667777777776643 68999998
Q ss_pred CCCChHHHHHHHHHHH---------------hccCCHHHHHHHHHhhCCCCccCHHHHHHHHHHHHHH
Q 023357 153 AGRGRSTTIVLCYLVE---------------YKHMAPAAALEYVRCRRPRVLLAPSQWKAVQEFSQRK 205 (283)
Q Consensus 153 ~G~~RSgtvv~ayLm~---------------~~~~~~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~ 205 (283)
.-.|-+..-+.+.+.. ..+.+.++.+..++..--....+...+..+.++-.+.
T Consensus 201 nd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~ 268 (275)
T cd07937 201 DTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEV 268 (275)
T ss_pred CCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHH
Confidence 6666444433332221 1245677778777765223334555555555554443
No 130
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=23.18 E-value=1e+02 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCC
Q 023357 129 DIRRAVDFIHSNSCAGKTTYVHCKAG 154 (283)
Q Consensus 129 ~l~~av~~I~~~~~~~~~VlVHC~~G 154 (283)
...-++..++++.++|.+|+|+|..-
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35567788888999999999999544
No 131
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=23.13 E-value=3.4e+02 Score=26.35 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCC-CcEEEEcC-----------CC-----CChHHHHHHHHHHHhccCC-----HHHHHHHHHh-----
Q 023357 131 RRAVDFIHSNSCAG-KTTYVHCK-----------AG-----RGRSTTIVLCYLVEYKHMA-----PAAALEYVRC----- 183 (283)
Q Consensus 131 ~~av~~I~~~~~~~-~~VlVHC~-----------~G-----~~RSgtvv~ayLm~~~~~~-----~~~A~~~vr~----- 183 (283)
+.+.+.|+++.++| .-+-|||. .| +||-|++.++|++.....+ +++.++.++.
T Consensus 140 d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtl 219 (423)
T TIGR00190 140 DDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTL 219 (423)
T ss_pred HHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeee
Confidence 44556677776666 67999995 11 4788999999999776653 3344445443
Q ss_pred -----hCCCCccCHHHHHHHHH
Q 023357 184 -----RRPRVLLAPSQWKAVQE 200 (283)
Q Consensus 184 -----~Rp~i~~~~~q~~~L~~ 200 (283)
.||+......-..|+++
T Consensus 220 SLGDglRPG~i~DA~D~aQi~E 241 (423)
T TIGR00190 220 SLGDGLRPGCIADATDRAQISE 241 (423)
T ss_pred eccCCcCCCccccCCcHHHHHH
Confidence 68888765433334333
No 132
>PRK07411 hypothetical protein; Validated
Probab=22.60 E-value=95 Score=29.64 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=18.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
++++|+|+|..|. ||.. ++.+| +..|.
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~L-~~~G~ 367 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGIL-KEAGI 367 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHH-HHcCC
Confidence 4679999999885 8855 33333 45665
No 133
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=22.35 E-value=86 Score=27.09 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=19.3
Q ss_pred HHHHHHhccCCHHHHHHHHHhh
Q 023357 163 LCYLVEYKHMAPAAALEYVRCR 184 (283)
Q Consensus 163 ~ayLm~~~~~~~~~A~~~vr~~ 184 (283)
=..||+.+|+|-++|++++|..
T Consensus 151 KglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 151 KGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 3579999999999999999864
No 134
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=22.28 E-value=3.4e+02 Score=26.37 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCC-CcEEEEcC---------------CC-CChHHHHHHHHHHHhccCC-----HHHHHHHHHh-----
Q 023357 131 RRAVDFIHSNSCAG-KTTYVHCK---------------AG-RGRSTTIVLCYLVEYKHMA-----PAAALEYVRC----- 183 (283)
Q Consensus 131 ~~av~~I~~~~~~~-~~VlVHC~---------------~G-~~RSgtvv~ayLm~~~~~~-----~~~A~~~vr~----- 183 (283)
+.+.+.|+++.++| .-+.|||. .| +||-|++.++|++.....+ +++.++.++.
T Consensus 143 d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtl 222 (431)
T PRK13352 143 DDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTL 222 (431)
T ss_pred HHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeee
Confidence 34556666666666 67999995 12 4788999999999766553 3344455543
Q ss_pred -----hCCCCccCHHHHHHHH
Q 023357 184 -----RRPRVLLAPSQWKAVQ 199 (283)
Q Consensus 184 -----~Rp~i~~~~~q~~~L~ 199 (283)
.||+..-...-..|++
T Consensus 223 SLGDglRPG~i~Da~D~aQi~ 243 (431)
T PRK13352 223 SLGDGLRPGCIADATDRAQIQ 243 (431)
T ss_pred eccCCcCCCccccCCcHHHHH
Confidence 6888876543333333
No 135
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=22.27 E-value=1.4e+02 Score=20.98 Aligned_cols=28 Identities=25% Similarity=0.403 Sum_probs=16.4
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHhccC
Q 023357 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~ 172 (283)
..+.+|+|+|..|. |+. .+ ++.++..|.
T Consensus 54 ~~~~~iv~~c~~g~-~a~-~~-~~~l~~~G~ 81 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSA-KA-AWLLRELGF 81 (100)
T ss_pred CCCCeEEEEeCCCc-HHH-HH-HHHHHHcCC
Confidence 45689999996653 653 22 333444444
No 136
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.55 E-value=5.9e+02 Score=22.77 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=66.1
Q ss_pred hhHHHhCCCeeEEEecCCCCCCCCc-------chhhhcCceEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCcEEEEc
Q 023357 79 VPRLKQLGVGGVITLNEPYETLVPS-------SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHC 151 (283)
Q Consensus 79 ~~~L~~~gI~~VI~L~~~~e~~~~~-------~~~~~~gi~~~~ip~~D~~~~~~~~~l~~av~~I~~~~~~~~~VlVHC 151 (283)
.+..++.|+...+++..... .+. ....+.|...+.++..-. .-...++.+.+..+.+....+-++-+||
T Consensus 115 i~~ak~~G~~v~~~~~~a~~--~~~~~~~~~~~~~~~~g~~~i~l~DT~G--~~~P~~v~~lv~~l~~~~~~~~~i~~H~ 190 (266)
T cd07944 115 IKAIKEKGYEVFFNLMAISG--YSDEELLELLELVNEIKPDVFYIVDSFG--SMYPEDIKRIISLLRSNLDKDIKLGFHA 190 (266)
T ss_pred HHHHHHCCCeEEEEEEeecC--CCHHHHHHHHHHHHhCCCCEEEEecCCC--CCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34457799998888876543 222 123456788777765443 4446678888888877655447899999
Q ss_pred CCCCChHHHHHHHHHHH---------------hccCCHHHHHHHHHhhCCCCccCHHH
Q 023357 152 KAGRGRSTTIVLCYLVE---------------YKHMAPAAALEYVRCRRPRVLLAPSQ 194 (283)
Q Consensus 152 ~~G~~RSgtvv~ayLm~---------------~~~~~~~~A~~~vr~~Rp~i~~~~~q 194 (283)
..-.|=+.+-+.+.+-. ..+.+.++.+..++... ....+...
T Consensus 191 Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~~-~~~~dl~~ 247 (266)
T cd07944 191 HNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNKF-GKKYNLEP 247 (266)
T ss_pred CCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHhh-ccCCCHHH
Confidence 87666443333322221 12346777777777663 33344433
No 137
>PRK14071 6-phosphofructokinase; Provisional
Probab=21.51 E-value=4.9e+02 Score=24.64 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=46.2
Q ss_pred hhHHHhCCCeeEEEecCCCCCCCCcchhhhcCceEEEEeC-CCCCCCCc--H----HHHHHHHHHHHHH---hcCCCcEE
Q 023357 79 VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPT-RDYLFAPS--F----VDIRRAVDFIHSN---SCAGKTTY 148 (283)
Q Consensus 79 ~~~L~~~gI~~VI~L~~~~e~~~~~~~~~~~gi~~~~ip~-~D~~~~~~--~----~~l~~av~~I~~~---~~~~~~Vl 148 (283)
.+.|++++|..+|-+........-....++.+|..+.+|- -|++.+-+ . ..++.+++.|+.. .....+++
T Consensus 100 ~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~~~~~id~i~~ta~s~~rv~ 179 (360)
T PRK14071 100 IDGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAASHNRVM 179 (360)
T ss_pred HHHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHHHHHHHHHHHhhhcccCCEE
Confidence 5678899999999997653211111222224899999996 34432221 1 1222333333332 22345788
Q ss_pred EEcCCCCChHHHHHH
Q 023357 149 VHCKAGRGRSTTIVL 163 (283)
Q Consensus 149 VHC~~G~~RSgtvv~ 163 (283)
|.=.-|+ .+|-+++
T Consensus 180 ivEvMGR-~~G~LAl 193 (360)
T PRK14071 180 ILEVMGR-DAGHIAL 193 (360)
T ss_pred EEEECCC-CccHHHH
Confidence 8777775 3555544
No 138
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.28 E-value=1.7e+02 Score=24.10 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHH
Q 023357 126 SFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIV 162 (283)
Q Consensus 126 ~~~~l~~av~~I~~~~~~~~~VlVHC~~G~~RSgtvv 162 (283)
..+.+.++++.|.+.+.+.++|++. |.|.|+.++
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3567889999999888777888886 666666654
No 139
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.05 E-value=86 Score=25.12 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=24.4
Q ss_pred ccEEEcCCCCCCChhHHHhCCCeeEEEecC
Q 023357 66 QFLLLGAVPFPKDVPRLKQLGVGGVITLNE 95 (283)
Q Consensus 66 ~~L~lG~~~~~~~~~~L~~~gI~~VI~L~~ 95 (283)
..+++|+.....+.+.|++.||..++....
T Consensus 85 i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 85 ILVVVGGVIPPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred CEEEEeCCCChHhHHHHHHCCCCEEECCCC
Confidence 348889877777888999999999997654
No 140
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=20.86 E-value=1.9e+02 Score=25.41 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhccCCHHHHHHHHHh
Q 023357 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRC 183 (283)
Q Consensus 143 ~~~~VlVHC~~G~~RSgtvv~ayLm~~~~~~~~~A~~~vr~ 183 (283)
-+|+|.|||..= +...+++-+||....|+-++++.+++.
T Consensus 184 lNGriWV~ae~~--~~t~~i~~~l~~~e~~td~~q~~~~k~ 222 (230)
T KOG1004|consen 184 LNGRIWVKAETL--SDTLIIANILMNCEFMTDTQQRIMVKQ 222 (230)
T ss_pred cCceEEEeccCc--chHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 368999999865 567888889999999988887766654
No 141
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.59 E-value=2.1e+02 Score=27.27 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=11.9
Q ss_pred HhcCCCcEEEEcCCCC
Q 023357 140 NSCAGKTTYVHCKAGR 155 (283)
Q Consensus 140 ~~~~~~~VlVHC~~G~ 155 (283)
.+..|..||.||.+|.
T Consensus 163 ~I~dg~~ILThcnsg~ 178 (363)
T PRK05772 163 KLNDGDTVLTQCNAGG 178 (363)
T ss_pred hcCCCCEEEEecCCcc
Confidence 3345778999998873
No 142
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=20.43 E-value=5.2e+02 Score=24.10 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=20.4
Q ss_pred cccccEEEcC--CCCCCChhHH----HhCCCeeEEEecCCC
Q 023357 63 EVDQFLLLGA--VPFPKDVPRL----KQLGVGGVITLNEPY 97 (283)
Q Consensus 63 ~I~~~L~lG~--~~~~~~~~~L----~~~gI~~VI~L~~~~ 97 (283)
-|+.++.++. .+...+.... ..-||++|++.....
T Consensus 16 ~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~~~ 56 (374)
T cd01317 16 LVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTN 56 (374)
T ss_pred EEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCCCC
Confidence 3555666544 3333444333 346899999997543
No 143
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=20.26 E-value=1.2e+02 Score=28.09 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=13.1
Q ss_pred hcCCCcEEEEcCCCCChHH
Q 023357 141 SCAGKTTYVHCKAGRGRST 159 (283)
Q Consensus 141 ~~~~~~VlVHC~~G~~RSg 159 (283)
+..+.+|+++|..|. |++
T Consensus 266 i~~~~~iv~yC~sG~-~A~ 283 (320)
T PLN02723 266 ISLDSPIVASCGTGV-TAC 283 (320)
T ss_pred CCCCCCEEEECCcHH-HHH
Confidence 345689999998875 443
No 144
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=20.16 E-value=1.7e+02 Score=29.83 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=14.4
Q ss_pred cCCCcEEEEcCCCCChHHHH
Q 023357 142 CAGKTTYVHCKAGRGRSTTI 161 (283)
Q Consensus 142 ~~~~~VlVHC~~G~~RSgtv 161 (283)
..+++|+|+|..|. ||+.+
T Consensus 221 ~~~~~VVvYC~sG~-rAa~~ 239 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGFT 239 (610)
T ss_pred CCCCCEEEECCCCh-HHHHH
Confidence 45689999999985 66543
No 145
>PTZ00458 acyl CoA binding protein; Provisional
Probab=20.11 E-value=2.1e+02 Score=21.47 Aligned_cols=33 Identities=6% Similarity=0.061 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCccCHHHHHHHHHHHHHHc
Q 023357 174 PAAALEYVRCRRPRVLLAPSQWKAVQEFSQRKL 206 (283)
Q Consensus 174 ~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 206 (283)
+++|+.+|++......++.+..-.||.|+++-.
T Consensus 5 F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt 37 (90)
T PTZ00458 5 FEECVSFINSLPKTVNLSVEIKLDLYKYYKQST 37 (90)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc
Confidence 678999999877766788889999999998876
Done!