BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023360
(283 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VIF5|DEL_DROME Protein deadlock OS=Drosophila melanogaster GN=del PE=2 SV=2
Length = 981
Score = 34.7 bits (78), Expect = 0.77, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 69 STFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEE--KKL--KRKRKQEKAN 124
S +Q G +V Q Q+ A GK+I ++ L++ KTE+ K+ K K KQ+
Sbjct: 229 SKITQRGHSVGQTQDYKAS-PGKIIKRVPRYSLQCLKK-KTEKVHNKIMDKPKNKQQPQT 286
Query: 125 KLKAKIQSSACESSDSSDSECEEEEVVQMIDGTQVEDGLLNLMPVIRSEESSPSPNVV 182
+ + ESSD SD + E+ Q + + LN + + R+E+ SP+P V
Sbjct: 287 PPPFLLNNEYTESSDDSDDQLPLSELSQKMKSNK-----LNTLFLSRNEDCSPAPEKV 339
>sp|Q88U41|ADDA_LACPL ATP-dependent helicase/nuclease subunit A OS=Lactobacillus
plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
GN=addA PE=3 SV=1
Length = 1249
Score = 34.7 bits (78), Expect = 0.86, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 49 EKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLK 108
EK K + G+ K ++T S+ FA D+ Q L V K I KQ +
Sbjct: 305 EKTARAKTMGTFVDGVKKQMTTLSETYFAADEQQVLDIMVGAKSIVTELVDATKQFKTAF 364
Query: 109 TEEKKLKRKRKQEKANKLKAKIQSSACESSDSS----DSECEEEEVVQMIDGTQVEDGLL 164
EK+ + L +I +S ESS ++ ++ EE V + D +++ +L
Sbjct: 365 AAEKRRRHVLDFSDLEHLTLQILTSDNESSQAALAQLRAQFEEVMVDEYQDINSLQESIL 424
Query: 165 NLM 167
L+
Sbjct: 425 QLL 427
>sp|A1CZE5|INO80_NEOFI Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3
SV=1
Length = 1708
Score = 32.7 bits (73), Expect = 3.0, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 29 VNKQSHEHQHHGGFVEMKKK----EKVGSIKKKLKLLKGLSKDLSTFSQMGFA-VDQDQN 83
V E ++ G V+ KK+ EK I++K + L K TF + A VD
Sbjct: 335 VESPGFEAEYDGYIVKSKKRALDAEKAEGIRRKRRRHDFLVKLGKTFEKQANAGVD---- 390
Query: 84 LLAQVRGKMISEA---AEVLMKQLEQLKTEEKKLKRKRKQEKANKLKAKIQSSACESSDS 140
R + +EA AEV K+++ K +K ++RKR++E +L+ + + A ++
Sbjct: 391 -----RFRAANEASVIAEVQAKEIQDEKERKKDMQRKRRRENTVRLEMQKKLEAERKANK 445
Query: 141 SDSECEEEEVVQMIDGTQVEDGLLNLMPVIRSEESSPSPNVVG 183
++ E+ + ++ + E + R+ E SP +G
Sbjct: 446 ANDAAEKAKFLR-----EAERAQRKIKSTKRALEGVTSPEEIG 483
>sp|O09015|MXI1_RAT Max-interacting protein 1 OS=Rattus norvegicus GN=Mxi1 PE=2 SV=1
Length = 228
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 56 KKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLK 115
++LK+L L D + + +G A+ K + EA QLE L+ E++ LK
Sbjct: 88 ERLKVLIPLGPDCTRHTTLGLLNK------AKAHIKKLEEAERKSQHQLENLEREQRFLK 141
Query: 116 RKRKQEKANKLKAKIQSSACESSDSSD-SECEEEEVVQMIDGTQVEDGLLNLMPV--IRS 172
R+ +Q + + +I+ + S+ SSD S+ E EE+ ++ T+ G ++ + I
Sbjct: 142 RRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISD 201
Query: 173 EESSPSPNVVGTDDGMT 189
+ S +G+D+G +
Sbjct: 202 IDDHSSLQSIGSDEGYS 218
>sp|P50540|MXI1_MOUSE Max-interacting protein 1 OS=Mus musculus GN=Mxi1 PE=1 SV=1
Length = 228
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 56 KKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLK 115
++LK+L L D + + +G A+ K + EA QLE L+ E++ LK
Sbjct: 88 ERLKVLIPLGPDCTRHTTLGLLNK------AKAHIKKLEEAERKSQHQLENLEREQRFLK 141
Query: 116 RKRKQEKANKLKAKIQSSACESSDSSD-SECEEEEVVQMIDGTQVEDGLLNLMPV--IRS 172
R+ +Q + + +I+ + S+ SSD S+ E EE+ ++ T+ G + + I
Sbjct: 142 RRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEADSVSTTSISD 201
Query: 173 EESSPSPNVVGTDDGMT 189
+ S VG+D+G +
Sbjct: 202 LDDHSSLQSVGSDEGYS 218
>sp|P22006|SVS2_RAT Seminal vesicle secretory protein 2 OS=Rattus norvegicus GN=Svs2
PE=1 SV=1
Length = 414
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 59 KLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEE 111
K LKG S+ Q GFA+D+D L+QVR + + V K +Q+KTEE
Sbjct: 309 KSLKGFSQQTQ---QKGFAMDED---LSQVRKQFDDDDLSVQQKSTQQMKTEE 355
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,848,502
Number of Sequences: 539616
Number of extensions: 4424553
Number of successful extensions: 21441
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 393
Number of HSP's that attempted gapping in prelim test: 20080
Number of HSP's gapped (non-prelim): 1276
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)