Query 023360
Match_columns 283
No_of_seqs 141 out of 972
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2auv_A Potential NAD-reducing 99.8 1.4E-19 4.9E-24 137.9 4.4 74 186-270 3-85 (85)
2 1m2d_A [2Fe-2S] ferredoxin; th 99.7 1.3E-18 4.3E-23 138.8 6.4 79 188-275 2-94 (110)
3 3i9v_2 NADH-quinone oxidoreduc 99.7 5.7E-17 1.9E-21 141.2 7.9 77 185-271 73-158 (181)
4 2w6b_A RHO guanine nucleotide 73.9 10 0.00034 27.5 6.2 41 87-127 2-42 (56)
5 3gpv_A Transcriptional regulat 66.9 13 0.00045 30.3 6.4 82 25-121 38-121 (148)
6 1q06_A Transcriptional regulat 60.2 14 0.00049 29.5 5.3 93 13-121 11-105 (135)
7 1r8e_A Multidrug-efflux transp 59.6 8.3 0.00028 33.3 4.1 74 27-119 29-103 (278)
8 3gp4_A Transcriptional regulat 57.3 26 0.0009 28.4 6.5 77 27-118 26-104 (142)
9 1q08_A Zn(II)-responsive regul 55.7 26 0.00089 25.9 5.8 51 71-121 12-65 (99)
10 4etm_A LMPTP, low molecular we 51.4 14 0.00049 31.0 4.1 42 186-227 16-59 (173)
11 4egs_A Ribose 5-phosphate isom 48.8 14 0.00047 31.3 3.6 41 188-228 34-74 (180)
12 2nr5_A Hypothetical protein SO 48.4 21 0.00071 26.1 4.0 35 108-142 7-42 (67)
13 1u2p_A Ptpase, low molecular w 42.8 19 0.00065 29.5 3.5 40 189-228 5-46 (163)
14 2cwd_A Low molecular weight ph 41.0 24 0.00083 29.0 3.9 41 188-228 4-46 (161)
15 2zhg_A Redox-sensitive transcr 39.4 25 0.00086 28.9 3.7 77 27-119 35-114 (154)
16 2oa5_A Hypothetical protein BQ 39.4 22 0.00077 28.9 3.3 24 96-119 9-32 (110)
17 2gi4_A Possible phosphotyrosin 37.7 29 0.001 28.4 3.9 39 190-228 3-43 (156)
18 2vz4_A Tipal, HTH-type transcr 37.3 27 0.00092 26.7 3.4 89 12-120 11-99 (108)
19 3rof_A Low molecular weight pr 36.5 31 0.0011 28.6 3.8 30 188-217 6-35 (158)
20 3jvi_A Protein tyrosine phosph 34.6 25 0.00087 29.0 3.0 29 189-217 5-33 (161)
21 3qh9_A Liprin-beta-2; coiled-c 32.3 85 0.0029 24.2 5.3 33 97-130 21-53 (81)
22 1p8a_A Protein tyrosine phosph 31.9 34 0.0012 27.5 3.3 26 189-214 5-30 (146)
23 3n8i_A Low molecular weight ph 31.5 32 0.0011 28.3 3.1 30 188-217 5-34 (157)
24 1d1q_A Tyrosine phosphatase (E 29.9 27 0.00092 28.6 2.4 29 187-215 6-34 (161)
25 1r8d_A Transcription activator 29.7 46 0.0016 25.3 3.6 90 11-120 11-100 (109)
26 3hh0_A Transcriptional regulat 29.5 39 0.0013 27.5 3.3 91 13-120 15-105 (146)
27 1jl3_A Arsenate reductase; alp 29.5 22 0.00075 28.3 1.7 25 189-213 4-28 (139)
28 1jf8_A Arsenate reductase; ptp 26.6 27 0.00091 27.7 1.7 25 189-213 4-28 (131)
29 2q2f_A Selenoprotein S; anti-p 26.0 2.2E+02 0.0076 22.2 6.8 46 76-125 35-80 (89)
30 4etn_A LMPTP, low molecular we 25.1 46 0.0016 28.3 3.1 41 188-228 34-74 (184)
31 3twe_A Alpha4H; unknown functi 23.9 1.2E+02 0.0043 18.6 3.9 21 97-117 3-23 (27)
32 2wmy_A WZB, putative acid phos 23.8 37 0.0013 27.5 2.1 25 189-213 9-33 (150)
33 3rh0_A Arsenate reductase; oxi 23.5 40 0.0014 27.7 2.3 26 188-213 20-45 (148)
34 2l17_A Synarsc, arsenate reduc 23.2 35 0.0012 27.2 1.8 25 189-213 5-29 (134)
35 1am9_A Srebp-1A, protein (ster 21.3 2E+02 0.0067 21.2 5.6 33 89-121 41-76 (82)
36 2y7c_A Type-1 restriction enzy 21.1 1E+02 0.0035 27.6 4.7 9 97-105 440-448 (464)
37 1y1l_A Arsenate reductase (ARS 21.0 30 0.001 27.1 1.0 23 191-213 2-24 (124)
38 2wja_A Putative acid phosphata 20.6 46 0.0016 27.7 2.1 25 189-213 27-51 (168)
39 2kk7_A V-type ATP synthase sub 20.5 2.1E+02 0.0073 19.6 6.1 37 85-121 8-44 (52)
No 1
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=99.77 E-value=1.4e-19 Score=137.91 Aligned_cols=74 Identities=22% Similarity=0.429 Sum_probs=67.3
Q ss_pred CCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCccc
Q 023360 186 DGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCI 256 (283)
Q Consensus 186 ~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~ 256 (283)
++++++|.||+|++|+++||.+|+++|++.++.. + ++..++|||.|..||+|+|++ .||.
T Consensus 3 p~g~~~I~VC~g~~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~~-----------~~y~ 71 (85)
T 2auv_A 3 PKGKYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGE-----------KVYG 71 (85)
T ss_dssp SCCSBCEECCCCHHHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEGG-----------GCCC
T ss_pred CCCCEEEEECCCchHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEECC-----------EEEC
Confidence 5679999999999999999999999999999753 2 789999999999999999972 5899
Q ss_pred CCChhhHHHHHHHH
Q 023360 257 GVALEDVGAIVGNL 270 (283)
Q Consensus 257 ~VtpEDV~eIVee~ 270 (283)
+|||+||++||++|
T Consensus 72 ~vt~e~v~~il~~~ 85 (85)
T 2auv_A 72 NVTPGQVKKILAEY 85 (85)
T ss_dssp CSSSSHHHHHHHHC
T ss_pred CCCHHHHHHHHHhC
Confidence 99999999999874
No 2
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=99.74 E-value=1.3e-18 Score=138.81 Aligned_cols=79 Identities=25% Similarity=0.424 Sum_probs=71.3
Q ss_pred CCcEEEEecC--------CcccccchHHHHHHHHHHhcCC-C-----cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCC
Q 023360 188 MTKRVEVCMG--------NKCKKSGGGALFEEFQRAMGAE-G-----DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNP 253 (283)
Q Consensus 188 ~k~~I~VC~G--------tsC~~~GA~~VLeaLeeeLg~~-G-----tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gv 253 (283)
++++|.||+| ++|+.+||.+|+++|+++++.. | +|..++|||.|..||+|.|+| +++
T Consensus 2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P---------~~~ 72 (110)
T 1m2d_A 2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYP---------DGV 72 (110)
T ss_dssp -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEET---------TTE
T ss_pred CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEe---------CCE
Confidence 5789999999 8999999999999999999876 3 799999999999999999984 468
Q ss_pred cccCCChhhHHHHHHHHHhcCC
Q 023360 254 LCIGVALEDVGAIVGNLFTQGS 275 (283)
Q Consensus 254 lY~~VtpEDV~eIVee~l~~~~ 275 (283)
||.+|||+||++||++|+.++.
T Consensus 73 ~y~~vt~e~v~~il~~~l~~g~ 94 (110)
T 1m2d_A 73 WYGQVKPEDVDEIVEKHLKGGE 94 (110)
T ss_dssp EECSCCGGGHHHHHHHTTTTSC
T ss_pred EEecCCHHHHHHHHHHHHHCCc
Confidence 9999999999999999886654
No 3
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=99.68 E-value=5.7e-17 Score=141.23 Aligned_cols=77 Identities=22% Similarity=0.474 Sum_probs=68.6
Q ss_pred CCCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcc
Q 023360 185 DDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLC 255 (283)
Q Consensus 185 ~~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY 255 (283)
.+.++++|.||+|++|+.+||.+|+++|++.|+.. | ++..++|+|.|+.||+|+|++. .||
T Consensus 73 ~P~gk~~I~VC~gt~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V~~~----------~~y 142 (181)
T 3i9v_2 73 VPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDE----------PYV 142 (181)
T ss_dssp SCCCSEEEEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSSS----------CCB
T ss_pred CCCCCEEEEECCCchhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEECCE----------EEE
Confidence 46789999999999999999999999999999853 2 7999999999999999999642 288
Q ss_pred cCCChhhHHHHHHHHH
Q 023360 256 IGVALEDVGAIVGNLF 271 (283)
Q Consensus 256 ~~VtpEDV~eIVee~l 271 (283)
.+|||+||++||+++.
T Consensus 143 ~~vt~e~v~~Il~~l~ 158 (181)
T 3i9v_2 143 ECVTRARLEALLAGLR 158 (181)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999999854
No 4
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=73.87 E-value=10 Score=27.53 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=33.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023360 87 QVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQEKANKLK 127 (283)
Q Consensus 87 ~~~~~~~sea~e~l~~~l~~~~~~~k~~k~~~k~ek~a~~k 127 (283)
-++++.|=|++=.|=.|++.++.+-|.|++-..+|.+|...
T Consensus 2 ~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~ 42 (56)
T 2w6b_A 2 PLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKD 42 (56)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999998888876553
No 5
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=66.87 E-value=13 Score=30.31 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=48.0
Q ss_pred ccCccccccCCCCcccccccccccccccchHHHHHHHHhhhcccccccccccccccchhHHHHHHh--hhHHHHHHHHHH
Q 023360 25 GLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRG--KMISEAAEVLMK 102 (283)
Q Consensus 25 ~~gf~~~~~~d~ghl~yy~~~~~~~~~~~~kkk~kll~~ls~dl~~~~~~g~~~d~~~~l~~~~~~--~~~sea~e~l~~ 102 (283)
-.|.+.....+++-.+||...-= ..++.++. |..+||..+.=..+++.... .-+.+..+.|-+
T Consensus 38 ~~Gll~p~~r~~~g~R~Y~~~dl--------~~l~~I~~-------lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~ 102 (148)
T 3gpv_A 38 KQGLFPFLQRNEKGDRIFNEEAL--------KYLEMILC-------LKNTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQ 102 (148)
T ss_dssp HTTCCTTCEECTTCCEEBCHHHH--------HHHHHHHH-------HHTTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HCCCCCCCcCCCCCCeecCHHHH--------HHHHHHHH-------HHHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHH
Confidence 34554433345555577765321 23555555 56788887744455543221 234566778888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023360 103 QLEQLKTEEKKLKRKRKQE 121 (283)
Q Consensus 103 ~l~~~~~~~k~~k~~~k~e 121 (283)
+++++.++..++++....=
T Consensus 103 ~~~~l~~~i~~L~~~~~~L 121 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKI 121 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888887777776655443
No 6
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=60.22 E-value=14 Score=29.55 Aligned_cols=93 Identities=15% Similarity=0.282 Sum_probs=49.7
Q ss_pred CCccccccccccccCccccccCCCCcccccccccccccccchHHHHHHHHhhhcccccccccccccccchhHHHHHHh--
Q 023360 13 SAGMDTQRRYSAGLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRG-- 90 (283)
Q Consensus 13 ~~~~~~~~r~~~~~gf~~~~~~d~ghl~yy~~~~~~~~~~~~kkk~kll~~ls~dl~~~~~~g~~~d~~~~l~~~~~~-- 90 (283)
|.++.|=+.|.. .|.+.....+++-.+||...-= ..++.++. |..+||..+.=..+++....
T Consensus 11 gvs~~tLR~ye~-~Gll~p~~r~~~g~R~Y~~~dl--------~~l~~I~~-------lr~~G~sl~eI~~~l~~~~~~~ 74 (135)
T 1q06_A 11 GLTSKAIRFYEE-KGLVTPPMRSENGYRTYTQQHL--------NELTLLRQ-------ARQVGFNLEESGELVNLFNDPQ 74 (135)
T ss_dssp TCCHHHHHHHHH-TTCSCCCEECTTSCEECCHHHH--------HHHHHHHH-------HHHTTCCHHHHHHHHHHHHCTT
T ss_pred CcCHHHHHHHHH-CCCCCCCccCCCCCeeeCHHHH--------HHHHHHHH-------HHHCCCCHHHHHHHHHhhhcCC
Confidence 444444443332 3444443345555677765321 12444444 55678877633344433221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023360 91 KMISEAAEVLMKQLEQLKTEEKKLKRKRKQE 121 (283)
Q Consensus 91 ~~~sea~e~l~~~l~~~~~~~k~~k~~~k~e 121 (283)
.-..+..++|-++++++.++..++++.++.=
T Consensus 75 ~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L 105 (135)
T 1q06_A 75 RHSADVKRRTLEKVAEIERHIEELQSMRDQL 105 (135)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245566778888888888777776655443
No 7
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=59.59 E-value=8.3 Score=33.31 Aligned_cols=74 Identities=11% Similarity=0.125 Sum_probs=38.3
Q ss_pred CccccccC-CCCcccccccccccccccchHHHHHHHHhhhcccccccccccccccchhHHHHHHhhhHHHHHHHHHHHHH
Q 023360 27 GFVNKQSH-EHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLE 105 (283)
Q Consensus 27 gf~~~~~~-d~ghl~yy~~~~~~~~~~~~kkk~kll~~ls~dl~~~~~~g~~~d~~~~l~~~~~~~~~sea~e~l~~~l~ 105 (283)
|.+...-. +++..|||...-= ..+..++. |..+||..+.=..+++.. ..+..+.|-++++
T Consensus 29 gll~p~~~d~~~g~R~y~~~~~--------~~l~~i~~-------l~~~g~~l~~i~~~~~~~----~~~~~~~l~~~~~ 89 (278)
T 1r8e_A 29 DLFKPAYVDPDTSYRYYTDSQL--------IHLDLIKS-------LKYIGTPLEEMKKAQDLE----MEELFAFYTEQER 89 (278)
T ss_dssp TSSCCSEECTTTCCEEEETGGG--------GHHHHHHH-------HHHTTCCHHHHHHHTTSC----HHHHHHHHHHHHH
T ss_pred CCCCCCccCCCCCccccCHHHH--------HHHHHHHH-------HHHCCCCHHHHHHHHHhC----hHHHHHHHHHHHH
Confidence 55433333 4566788876422 12444544 556777766322232211 3444556666666
Q ss_pred HHHHHHHHHHHHHH
Q 023360 106 QLKTEEKKLKRKRK 119 (283)
Q Consensus 106 ~~~~~~k~~k~~~k 119 (283)
++.++..++++.++
T Consensus 90 ~l~~~i~~l~~~~~ 103 (278)
T 1r8e_A 90 QIREKLDFLSALEQ 103 (278)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655444
No 8
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=57.34 E-value=26 Score=28.37 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=37.2
Q ss_pred CccccccCCCCcccccccccccccccchHHHHHHHHhhhcccccccccccccccchhHHHHHHh--hhHHHHHHHHHHHH
Q 023360 27 GFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRG--KMISEAAEVLMKQL 104 (283)
Q Consensus 27 gf~~~~~~d~ghl~yy~~~~~~~~~~~~kkk~kll~~ls~dl~~~~~~g~~~d~~~~l~~~~~~--~~~sea~e~l~~~l 104 (283)
|.+.....+++-.+||...-= ..+..++. |..+||..+.=..+++.... .-+.+..+.|-+++
T Consensus 26 GLl~p~~r~~~g~R~Y~~~dl--------~~l~~I~~-------lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~ 90 (142)
T 3gp4_A 26 GLIPPIHRNESGVRKFGAEDL--------RWILFTRQ-------MRRAGLSIEALIDYLALFREGEHTLEARAELLKKQR 90 (142)
T ss_dssp TSSCCCCBCTTSCBCBCHHHH--------HHHHHHHH-------HHHTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCeeeCHHHH--------HHHHHHHH-------HHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 454433345555577765311 22455554 55677877643344432211 12334445555555
Q ss_pred HHHHHHHHHHHHHH
Q 023360 105 EQLKTEEKKLKRKR 118 (283)
Q Consensus 105 ~~~~~~~k~~k~~~ 118 (283)
+++.++..++.+.+
T Consensus 91 ~~l~~~i~~L~~~~ 104 (142)
T 3gp4_A 91 IELKNRIDVMQEAL 104 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554433
No 9
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=55.66 E-value=26 Score=25.86 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=35.5
Q ss_pred ccccccccccchhHHHHHH-hh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023360 71 FSQMGFAVDQDQNLLAQVR-GK--MISEAAEVLMKQLEQLKTEEKKLKRKRKQE 121 (283)
Q Consensus 71 ~~~~g~~~d~~~~l~~~~~-~~--~~sea~e~l~~~l~~~~~~~k~~k~~~k~e 121 (283)
|..+||..+-=..+++... +. -..+..+.|-++++++..+..++.+.++.=
T Consensus 12 lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L 65 (99)
T 1q08_A 12 ARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSL 65 (99)
T ss_dssp HHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999885445555432 21 345677888888888888888887766544
No 10
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=51.44 E-value=14 Score=31.03 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=30.8
Q ss_pred CCCCcEEEEecCCcccccchHHHHHHHHHHhcCCC--cEEeecC
Q 023360 186 DGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEG--DVVACKC 227 (283)
Q Consensus 186 ~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~G--tV~~tgC 227 (283)
......+.||+|..|.+-=|+.|+..+-..-+..+ .+..+|=
T Consensus 16 ~~M~kVLFVCtGNiCRSpmAE~i~r~~~~~~gl~~~~~v~SAGt 59 (173)
T 4etm_A 16 GSMISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGI 59 (173)
T ss_dssp SSCEEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEES
T ss_pred CCccEEEEEeCCcchhhHHHHHHHHHHHHHcCCCCceEEecccc
Confidence 34457899999999999999999988776654433 4555543
No 11
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=48.82 E-value=14 Score=31.26 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=32.0
Q ss_pred CCcEEEEecCCcccccchHHHHHHHHHHhcCCCcEEeecCC
Q 023360 188 MTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCM 228 (283)
Q Consensus 188 ~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~GtV~~tgCL 228 (283)
.-+.++||+|..|.+-=|+.|+..+.+.++..-.+..+|-.
T Consensus 34 ~mkVLFVC~GNiCRSpmAE~l~r~~~~~~g~~~~v~SAGt~ 74 (180)
T 4egs_A 34 SMRVLFVCTGNTCRSPMAEGIFNAKSKALGKDWEAKSAGVF 74 (180)
T ss_dssp CCEEEEEESSSSSHHHHHHHHHHHHHHHTTCCCEEEEEETT
T ss_pred CeEEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEeeec
Confidence 34689999999999999999999887776644466666653
No 12
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=48.39 E-value=21 Score=26.07 Aligned_cols=35 Identities=46% Similarity=0.455 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-ccccCCCCCCc
Q 023360 108 KTEEKKLKRKRKQEKANKLKAKIQ-SSACESSDSSD 142 (283)
Q Consensus 108 ~~~~k~~k~~~k~ek~a~~ka~k~-~~~~~ssess~ 142 (283)
|.|+-...|-+.+|.--++||.++ |..-.||+|||
T Consensus 7 kkeriaiqrsmaeealgklkairqlcgaedssdssd 42 (67)
T 2nr5_A 7 KKERIAIQRSMAEEALGKLKAIRQLCGAEDSSDSSD 42 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCC----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCcchh
Confidence 445566677777777778899988 66655667766
No 13
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=42.76 E-value=19 Score=29.53 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=29.5
Q ss_pred CcEEEEecCCcccccchHHHHHHHHHHhcCCC--cEEeecCC
Q 023360 189 TKRVEVCMGNKCKKSGGGALFEEFQRAMGAEG--DVVACKCM 228 (283)
Q Consensus 189 k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~G--tV~~tgCL 228 (283)
.+.+.||+|..|.+-=|+.|+..+-...+..+ .+...|=.
T Consensus 5 ~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~ 46 (163)
T 1u2p_A 5 LHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTG 46 (163)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESS
T ss_pred CEEEEEcCCcHhHHHHHHHHHHHHHHHCCCCCcEEEEecccC
Confidence 46799999999999999999998876644322 44444443
No 14
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=41.04 E-value=24 Score=28.97 Aligned_cols=41 Identities=22% Similarity=0.450 Sum_probs=30.4
Q ss_pred CCcEEEEecCCcccccchHHHHHHHHHHhcCCC--cEEeecCC
Q 023360 188 MTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEG--DVVACKCM 228 (283)
Q Consensus 188 ~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~G--tV~~tgCL 228 (283)
+.+.+.||+|..|.+-=|+.|+..+-...+..+ .+...|=.
T Consensus 4 ~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~ 46 (161)
T 2cwd_A 4 PVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTG 46 (161)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHHTCTTTEEEEEEESS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHHHHcCCCCcEEEEecccC
Confidence 356899999999999999999998877554322 45555444
No 15
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=39.42 E-value=25 Score=28.87 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=37.1
Q ss_pred CccccccCCCCcccccccccccccccchHHHHHHHHhhhcccccccccccccccchhHHHHHHhh---hHHHHHHHHHHH
Q 023360 27 GFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGK---MISEAAEVLMKQ 103 (283)
Q Consensus 27 gf~~~~~~d~ghl~yy~~~~~~~~~~~~kkk~kll~~ls~dl~~~~~~g~~~d~~~~l~~~~~~~---~~sea~e~l~~~ 103 (283)
|.+.. ..+++-.+||...-= ..+.+++. |..+||..+.=..+++..... ...+..++|-++
T Consensus 35 Gll~p-~r~~~g~R~Y~~~dl--------~~l~~I~~-------lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~ll~~~ 98 (154)
T 2zhg_A 35 GLITS-IRNSGNQRRYKRDVL--------RYVAIIKI-------AQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQW 98 (154)
T ss_dssp TSSCC-EECTTSCEEBCTTHH--------HHHHHHHH-------HHHHTCCHHHHHHHHCC-----CCCHHHHHHHHHHH
T ss_pred CCCCc-ccCCCCCEEeCHHHH--------HHHHHHHH-------HHHCCCCHHHHHHHHHhccccCcccHHHHHHHHHHH
Confidence 45443 244555577765311 12444443 556777765322333221111 133445566666
Q ss_pred HHHHHHHHHHHHHHHH
Q 023360 104 LEQLKTEEKKLKRKRK 119 (283)
Q Consensus 104 l~~~~~~~k~~k~~~k 119 (283)
++++..+..+++..++
T Consensus 99 ~~~l~~qi~~L~~~~~ 114 (154)
T 2zhg_A 99 REELDRRIHTLVALRD 114 (154)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666655443
No 16
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=39.40 E-value=22 Score=28.86 Aligned_cols=24 Identities=46% Similarity=0.599 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023360 96 AAEVLMKQLEQLKTEEKKLKRKRK 119 (283)
Q Consensus 96 a~e~l~~~l~~~~~~~k~~k~~~k 119 (283)
..|.|..||++|+-|-|.||+|.+
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999998875
No 17
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=37.74 E-value=29 Score=28.42 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=29.3
Q ss_pred cEEEEecCCcccccchHHHHHHHHHHhcCCC--cEEeecCC
Q 023360 190 KRVEVCMGNKCKKSGGGALFEEFQRAMGAEG--DVVACKCM 228 (283)
Q Consensus 190 ~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~G--tV~~tgCL 228 (283)
..+.||+|..|.+-=|+.|+..+-..-+..+ .+..+|=-
T Consensus 3 ~VLFVC~gNicRSpmAEai~~~~~~~~gl~~~~~v~SAGt~ 43 (156)
T 2gi4_A 3 KILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTS 43 (156)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHHHHHTTTTTCEEEEEBSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEeeecC
Confidence 5789999999999999999998877644322 45555544
No 18
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=37.28 E-value=27 Score=26.65 Aligned_cols=89 Identities=19% Similarity=0.346 Sum_probs=42.8
Q ss_pred CCCccccccccccccCccccccCCCCcccccccccccccccchHHHHHHHHhhhcccccccccccccccchhHHHHHHhh
Q 023360 12 SSAGMDTQRRYSAGLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGK 91 (283)
Q Consensus 12 ~~~~~~~~~r~~~~~gf~~~~~~d~ghl~yy~~~~~~~~~~~~kkk~kll~~ls~dl~~~~~~g~~~d~~~~l~~~~~~~ 91 (283)
.|.++.|=+.|.. .|.+.....+++-.+||...-= ..+..++. |..+||..+.=..+++.
T Consensus 11 ~gvs~~tLR~ye~-~Gll~p~~r~~~g~R~Y~~~dl--------~~l~~I~~-------lr~~G~sl~~I~~~l~~---- 70 (108)
T 2vz4_A 11 AGVTVRTLHHYDD-IGLLVPSERSHAGHRRYSDADL--------DRLQQILF-------YRELGFPLDEVAALLDD---- 70 (108)
T ss_dssp HTCCHHHHHHHHH-HTSSCCSEECSSCCEEBCHHHH--------HHHHHHHH-------HHHTTCCHHHHHHHHTC----
T ss_pred HCcCHHHHHHHHH-CCCCCCCccCCCCCeecCHHHH--------HHHHHHHH-------HHHCCCCHHHHHHHHhC----
Confidence 3444445444432 3554444334455577765311 12344443 45677776522222211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023360 92 MISEAAEVLMKQLEQLKTEEKKLKRKRKQ 120 (283)
Q Consensus 92 ~~sea~e~l~~~l~~~~~~~k~~k~~~k~ 120 (283)
-..+..+.|-++++++..+..++.+..+.
T Consensus 71 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 99 (108)
T 2vz4_A 71 PAADPRAHLRRQHELLSARIGKLQKMAAA 99 (108)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234456777777777777777665544
No 19
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=36.46 E-value=31 Score=28.62 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=25.2
Q ss_pred CCcEEEEecCCcccccchHHHHHHHHHHhc
Q 023360 188 MTKRVEVCMGNKCKKSGGGALFEEFQRAMG 217 (283)
Q Consensus 188 ~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg 217 (283)
....+.||+|..|.+-=|+.++..+-+..+
T Consensus 6 m~~vLFVC~gN~cRSpmAE~i~~~~~~~~g 35 (158)
T 3rof_A 6 MVDVAFVCLGNICRSPMAEAIMRQRLKDRN 35 (158)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCchhHHHHHHHHHHHHHHHcC
Confidence 456789999999999999999988876544
No 20
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=34.58 E-value=25 Score=28.96 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=24.7
Q ss_pred CcEEEEecCCcccccchHHHHHHHHHHhc
Q 023360 189 TKRVEVCMGNKCKKSGGGALFEEFQRAMG 217 (283)
Q Consensus 189 k~~I~VC~GtsC~~~GA~~VLeaLeeeLg 217 (283)
.+.+.||+|..|.+-=|+.++..+-...+
T Consensus 5 ~~vLFVC~gN~cRSpmAE~~~~~~~~~~g 33 (161)
T 3jvi_A 5 MKLLFVCLGNICRSPAAEAVMKKVIQNHH 33 (161)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHHcC
Confidence 46789999999999999999988876554
No 21
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.30 E-value=85 Score=24.22 Aligned_cols=33 Identities=39% Similarity=0.492 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023360 97 AEVLMKQLEQLKTEEKKLKRKRKQEKANKLKAKI 130 (283)
Q Consensus 97 ~e~l~~~l~~~~~~~k~~k~~~k~ek~a~~ka~k 130 (283)
+|.|++|+..+|-.--||--.+-+=.+ ++||.|
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEk-KLKsTK 53 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEW-KLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhH
Confidence 578999999999988888766655543 677766
No 22
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=31.88 E-value=34 Score=27.47 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=22.8
Q ss_pred CcEEEEecCCcccccchHHHHHHHHH
Q 023360 189 TKRVEVCMGNKCKKSGGGALFEEFQR 214 (283)
Q Consensus 189 k~~I~VC~GtsC~~~GA~~VLeaLee 214 (283)
...+.||+|..|.+-=|+.++..+-.
T Consensus 5 ~~VLFVC~gN~cRSpmAEal~~~~~~ 30 (146)
T 1p8a_A 5 KAVLFVCLGNICRSPACEGICRDMVG 30 (146)
T ss_dssp CCEEEESSSSCSSSTTHHHHHHHHHS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHhcC
Confidence 46899999999999999999888754
No 23
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=31.51 E-value=32 Score=28.30 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=25.0
Q ss_pred CCcEEEEecCCcccccchHHHHHHHHHHhc
Q 023360 188 MTKRVEVCMGNKCKKSGGGALFEEFQRAMG 217 (283)
Q Consensus 188 ~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg 217 (283)
..+.+.||+|..|.+-=|+.|+..+-...+
T Consensus 5 ~~~vLFVC~gN~cRSpmAE~~~~~~~~~~g 34 (157)
T 3n8i_A 5 TKSVLFVCLGNICRSPIAEAVFRKLVTDQN 34 (157)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCchhHHHHHHHHHHHHHHHcC
Confidence 356789999999999999999988876544
No 24
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=29.88 E-value=27 Score=28.63 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=24.9
Q ss_pred CCCcEEEEecCCcccccchHHHHHHHHHH
Q 023360 187 GMTKRVEVCMGNKCKKSGGGALFEEFQRA 215 (283)
Q Consensus 187 ~~k~~I~VC~GtsC~~~GA~~VLeaLeee 215 (283)
...+.+.||+|..|.+-=|+.|+..+-..
T Consensus 6 ~~~~VLFVCtgN~cRSpmAEal~~~~~~~ 34 (161)
T 1d1q_A 6 PKISVAFIALGNFCRSPMAEAIFKHEVEK 34 (161)
T ss_dssp CCEEEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999988764
No 25
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=29.68 E-value=46 Score=25.27 Aligned_cols=90 Identities=16% Similarity=0.264 Sum_probs=44.6
Q ss_pred cCCCccccccccccccCccccccCCCCcccccccccccccccchHHHHHHHHhhhcccccccccccccccchhHHHHHHh
Q 023360 11 TSSAGMDTQRRYSAGLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRG 90 (283)
Q Consensus 11 ~~~~~~~~~~r~~~~~gf~~~~~~d~ghl~yy~~~~~~~~~~~~kkk~kll~~ls~dl~~~~~~g~~~d~~~~l~~~~~~ 90 (283)
..|.+..|=+.|.. .|.......+++-.+||...-= ..+..++. |..+||..+.=..+++.
T Consensus 11 ~~gvs~~tLR~ye~-~Gll~p~~~~~~g~R~Y~~~dl--------~~l~~I~~-------l~~~G~~l~~I~~~l~~--- 71 (109)
T 1r8d_A 11 ISGVSIRTLHHYDN-IELLNPSALTDAGYRLYSDADL--------ERLQQILF-------FKEIGFRLDEIKEMLDH--- 71 (109)
T ss_dssp HHSCCHHHHHHHHH-TTSSCCSEECTTCCEEBCHHHH--------HHHHHHHH-------HHHTTCCHHHHHHHHHC---
T ss_pred HHCcCHHHHHHHHH-CCCCCCCeECCCCCeeeCHHHH--------HHHHHHHH-------HHHCCCCHHHHHHHHhC---
Confidence 34455555555543 4554443324444477765311 11333333 45667765422222211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023360 91 KMISEAAEVLMKQLEQLKTEEKKLKRKRKQ 120 (283)
Q Consensus 91 ~~~sea~e~l~~~l~~~~~~~k~~k~~~k~ 120 (283)
--.+..+.|-++++++..+..++.+..+.
T Consensus 72 -~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 100 (109)
T 1r8d_A 72 -PNFDRKAALQSQKEILMKKKQRMDEMIQT 100 (109)
T ss_dssp -TTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234567777777777777777665543
No 26
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=29.53 E-value=39 Score=27.48 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=43.8
Q ss_pred CCccccccccccccCccccccCCCCcccccccccccccccchHHHHHHHHhhhcccccccccccccccchhHHHHHHhhh
Q 023360 13 SAGMDTQRRYSAGLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKM 92 (283)
Q Consensus 13 ~~~~~~~~r~~~~~gf~~~~~~d~ghl~yy~~~~~~~~~~~~kkk~kll~~ls~dl~~~~~~g~~~d~~~~l~~~~~~~~ 92 (283)
|.++.|=|.|. -.|.+.....+++-.+||...-= ..+..++. |..+||..+.=..+++.. ..-
T Consensus 15 Gvs~~tLR~ye-~~GLl~p~~r~~~g~R~Y~~~dl--------~~l~~I~~-------lr~~G~sl~~I~~~l~~~-~~~ 77 (146)
T 3hh0_A 15 DVTVRALRYYD-KINLLKPSDYTEGGHRLYTKDDL--------YVLQQIQS-------FKHLGFSLGEIQNIILQR-DIE 77 (146)
T ss_dssp TCCHHHHHHHH-HTTSSCCSEECTTSCEEBCHHHH--------HHHHHHHH-------HHHTTCCHHHHHHHHTSS-EEE
T ss_pred CcCHHHHHHHH-HCCCCCCCeECCCCCEeeCHHHH--------HHHHHHHH-------HHHcCCCHHHHHHHHHcc-CCC
Confidence 34444433332 23554444345555577765311 12444444 455677665222333221 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023360 93 ISEAAEVLMKQLEQLKTEEKKLKRKRKQ 120 (283)
Q Consensus 93 ~sea~e~l~~~l~~~~~~~k~~k~~~k~ 120 (283)
+.+..+.|-+|++++.++..++.+..+.
T Consensus 78 ~~~~~~~L~~q~~~L~~~i~~l~~~l~~ 105 (146)
T 3hh0_A 78 TEVFLRQMHFQREVLLAEQERIAKVLSH 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777776666666655443
No 27
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=29.52 E-value=22 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.5
Q ss_pred CcEEEEecCCcccccchHHHHHHHH
Q 023360 189 TKRVEVCMGNKCKKSGGGALFEEFQ 213 (283)
Q Consensus 189 k~~I~VC~GtsC~~~GA~~VLeaLe 213 (283)
++.+.||+|..|.+-=|+.++..+-
T Consensus 4 ~~VLFVC~gN~cRSpmAEai~~~~~ 28 (139)
T 1jl3_A 4 KIIYFLCTGNSCRSQMAEGWAKQYL 28 (139)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHS
T ss_pred CeEEEEcCCchHHHHHHHHHHHHhC
Confidence 3679999999999998988888774
No 28
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=26.63 E-value=27 Score=27.73 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=21.2
Q ss_pred CcEEEEecCCcccccchHHHHHHHH
Q 023360 189 TKRVEVCMGNKCKKSGGGALFEEFQ 213 (283)
Q Consensus 189 k~~I~VC~GtsC~~~GA~~VLeaLe 213 (283)
++.+.||+|..|.+-=|+.++..+-
T Consensus 4 ~~VLFVC~gN~cRSpmAEa~~~~~~ 28 (131)
T 1jf8_A 4 KTIYFISTGNSARSQMAEGWGKEIL 28 (131)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHS
T ss_pred CEEEEEcCCcchHHHHHHHHHHHhc
Confidence 3578999999999998988888764
No 29
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=26.03 E-value=2.2e+02 Score=22.20 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=31.6
Q ss_pred cccccchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023360 76 FAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQEKANK 125 (283)
Q Consensus 76 ~~~d~~~~l~~~~~~~~~sea~e~l~~~l~~~~~~~k~~k~~~k~ek~a~ 125 (283)
-+.||+ .-|+-.--=+|.-.=|+|-..++|+.-..|.++.+|.|-.
T Consensus 35 a~~dPd----~vv~RQEAl~aaRlRMQEeldAqAe~~keKQkqlEEeKR~ 80 (89)
T 2q2f_A 35 AAVEPD----VVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRR 80 (89)
T ss_dssp HTTSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445665 2333333336777889999999999998888888887633
No 30
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=25.14 E-value=46 Score=28.27 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=29.7
Q ss_pred CCcEEEEecCCcccccchHHHHHHHHHHhcCCCcEEeecCC
Q 023360 188 MTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCM 228 (283)
Q Consensus 188 ~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~GtV~~tgCL 228 (283)
....+.||+|..|.+-=|+.|+..+-...+..-.+..+|--
T Consensus 34 ~~~VLFVC~gNiCRSpmAEai~r~~~~~~g~~~~v~SAGt~ 74 (184)
T 4etn_A 34 SMDIIFVCTGNTSRSPMAEALFKSIAEREGLNVNVRSAGVF 74 (184)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCEEEEECCCchhHHHHHHHHHHHHHHhcCCcEEEEeeecC
Confidence 34678999999999999999998887654321145555544
No 31
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.85 E-value=1.2e+02 Score=18.56 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023360 97 AEVLMKQLEQLKTEEKKLKRK 117 (283)
Q Consensus 97 ~e~l~~~l~~~~~~~k~~k~~ 117 (283)
++.|.+|||.++..-..+.+|
T Consensus 3 adelykeledlqerlrklrkk 23 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457888998886655544444
No 32
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli}
Probab=23.78 E-value=37 Score=27.51 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=21.7
Q ss_pred CcEEEEecCCcccccchHHHHHHHH
Q 023360 189 TKRVEVCMGNKCKKSGGGALFEEFQ 213 (283)
Q Consensus 189 k~~I~VC~GtsC~~~GA~~VLeaLe 213 (283)
++.+.||+|..|.+-=|+.++..+-
T Consensus 9 ~~VLFVC~gN~cRSpmAEal~r~~~ 33 (150)
T 2wmy_A 9 DSILVICTGNICRSPIGERLLRRLL 33 (150)
T ss_dssp CEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred CEEEEEcCCchHHHHHHHHHHHHhc
Confidence 4689999999999999998888764
No 33
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=23.53 E-value=40 Score=27.71 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=21.7
Q ss_pred CCcEEEEecCCcccccchHHHHHHHH
Q 023360 188 MTKRVEVCMGNKCKKSGGGALFEEFQ 213 (283)
Q Consensus 188 ~k~~I~VC~GtsC~~~GA~~VLeaLe 213 (283)
....+.||+|..|.+-=|+.++..+-
T Consensus 20 ~~~VLFVC~gN~cRSpmAEal~~~~~ 45 (148)
T 3rh0_A 20 MKSVLFVCVGNGGKSQMAAALAQKYA 45 (148)
T ss_dssp CCEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCchhHHHHHHHHHHHhc
Confidence 35678999999999988888887764
No 34
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=23.24 E-value=35 Score=27.16 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.6
Q ss_pred CcEEEEecCCcccccchHHHHHHHH
Q 023360 189 TKRVEVCMGNKCKKSGGGALFEEFQ 213 (283)
Q Consensus 189 k~~I~VC~GtsC~~~GA~~VLeaLe 213 (283)
++.+.||+|..|.+-=|+.++..+-
T Consensus 5 ~~VLFVC~gN~cRSpmAEa~~~~~~ 29 (134)
T 2l17_A 5 KKVMFVCKRNSCRSQMAEGFAKTLG 29 (134)
T ss_dssp EEEEEECCSSTHHHHHHHHHHHHHS
T ss_pred CEEEEEeCCchHHHHHHHHHHHHHc
Confidence 4679999999999998988888774
No 35
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=21.34 E-value=2e+02 Score=21.23 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=20.8
Q ss_pred HhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 023360 89 RGKMISEAAEV---LMKQLEQLKTEEKKLKRKRKQE 121 (283)
Q Consensus 89 ~~~~~sea~e~---l~~~l~~~~~~~k~~k~~~k~e 121 (283)
+..||.+|++- |-++.+.|+.+..+++...++.
T Consensus 41 Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 41 KSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56678888874 4556666666666666555444
No 36
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=21.11 E-value=1e+02 Score=27.62 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 023360 97 AEVLMKQLE 105 (283)
Q Consensus 97 ~e~l~~~l~ 105 (283)
+++||++..
T Consensus 440 a~~LL~ri~ 448 (464)
T 2y7c_A 440 AAALLEKIK 448 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444544443
No 37
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1
Probab=21.05 E-value=30 Score=27.11 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEecCCcccccchHHHHHHHH
Q 023360 191 RVEVCMGNKCKKSGGGALFEEFQ 213 (283)
Q Consensus 191 ~I~VC~GtsC~~~GA~~VLeaLe 213 (283)
.+.||+|..|.+-=|+.++..+-
T Consensus 2 VLFVC~gN~cRSpmAEa~~~~~~ 24 (124)
T 1y1l_A 2 VLFVCIHNTARSVMAEALFNAMA 24 (124)
T ss_dssp EEEEESSCSSHHHHHHHHHHTTC
T ss_pred EEEEeCCChhHHHHHHHHHHHhc
Confidence 57999999999988888877664
No 38
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=20.57 E-value=46 Score=27.74 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=22.0
Q ss_pred CcEEEEecCCcccccchHHHHHHHH
Q 023360 189 TKRVEVCMGNKCKKSGGGALFEEFQ 213 (283)
Q Consensus 189 k~~I~VC~GtsC~~~GA~~VLeaLe 213 (283)
...+.||+|+.|.+-=|+.|+..+-
T Consensus 27 ~~VLFVCtgNicRSpmAEal~r~~~ 51 (168)
T 2wja_A 27 DSILVICTGNICRSPIGERLLRRLL 51 (168)
T ss_dssp SEEEEEESSSSSHHHHHHHHHHHHS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHhc
Confidence 4789999999999999999988764
No 39
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=20.52 E-value=2.1e+02 Score=19.57 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=28.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023360 85 LAQVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQE 121 (283)
Q Consensus 85 ~~~~~~~~~sea~e~l~~~l~~~~~~~k~~k~~~k~e 121 (283)
++.+..+|+.+|-.---+=|++.+++-.+....-+++
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~ 44 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999998888888888887777776554444
Done!