Query 023361
Match_columns 283
No_of_seqs 215 out of 482
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10533 Plant_zn_clust: Plant 99.5 1.3E-14 2.8E-19 103.5 3.9 47 208-260 1-47 (47)
2 smart00774 WRKY DNA binding do 99.3 1.2E-12 2.6E-17 97.6 1.5 22 262-283 1-22 (59)
3 PF03106 WRKY: WRKY DNA -bindi 99.3 5.3E-13 1.2E-17 99.3 -1.2 22 262-283 1-22 (60)
4 PF05344 DUF746: Domain of Unk 84.8 1.1 2.4E-05 34.5 3.2 50 29-78 2-58 (65)
5 cd00686 Terpene_cyclase_cis_tr 53.4 17 0.00038 36.1 4.1 25 16-40 256-280 (357)
6 PF09883 DUF2110: Uncharacteri 36.1 14 0.0003 34.7 0.4 12 62-73 173-184 (225)
7 PF03859 CG-1: CG-1 domain; I 35.6 13 0.00029 31.7 0.2 8 263-270 52-59 (118)
8 PF08257 Sulfakinin: Sulfakini 25.6 26 0.00057 17.6 0.2 6 69-74 4-9 (9)
9 COG4044 Uncharacterized protei 24.2 29 0.00064 32.7 0.4 12 62-73 185-196 (247)
10 PF07516 SecA_SW: SecA Wing an 21.5 37 0.00079 30.3 0.4 10 265-274 171-180 (214)
11 COG3360 Uncharacterized conser 21.5 92 0.002 24.5 2.6 29 3-33 9-37 (71)
12 PHA03141 helicase-primase prim 20.5 1.1E+02 0.0024 25.6 3.0 20 47-66 82-101 (101)
No 1
>PF10533 Plant_zn_clust: Plant zinc cluster domain; InterPro: IPR018872 This zinc binding domain is found associated with the WRKY domain IPR003657 from INTERPRO [].
Probab=99.50 E-value=1.3e-14 Score=103.54 Aligned_cols=47 Identities=66% Similarity=1.103 Sum_probs=39.9
Q ss_pred cccCCCCCCCCCCCCCccccCCCCCCccccccccccceeeEEEEecccCCCcC
Q 023361 208 KKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIAD 260 (283)
Q Consensus 208 krkC~~~g~~~~d~sgKc~~~~~~~~~c~~sKrRk~~~k~~vrv~~~s~~~~~ 260 (283)
||+|+++ ++.+++|.+ +++|+|||+||||+|+||+|||||++++++|
T Consensus 1 krkC~~~----~~~~~~~~~--sssgrCHCsKkRK~RvKR~irVPAiS~K~AD 47 (47)
T PF10533_consen 1 KRKCHSH----NDSSGKCKC--SSSGRCHCSKKRKSRVKRTIRVPAISSKIAD 47 (47)
T ss_pred CCccccc----CcccCcccc--CCCCcccCCCcccccceeeEEeecccccccC
Confidence 6899997 345567642 7889999999999999999999999998765
No 2
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=99.27 E-value=1.2e-12 Score=97.57 Aligned_cols=22 Identities=73% Similarity=1.369 Sum_probs=21.1
Q ss_pred CCCCccccccCCCCCCCCCCCC
Q 023361 262 PPDEYSWRKYGQKPIKGSPYPR 283 (283)
Q Consensus 262 ~~DgysWRKYGQK~Ikgsp~PR 283 (283)
++|||.|||||||.|+|++|||
T Consensus 1 ~~DGy~WRKYGQK~ikgs~~pR 22 (59)
T smart00774 1 LDDGYQWRKYGQKVIKGSPFPR 22 (59)
T ss_pred CCCcccccccCcEecCCCcCcc
Confidence 4899999999999999999998
No 3
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=99.25 E-value=5.3e-13 Score=99.30 Aligned_cols=22 Identities=77% Similarity=1.417 Sum_probs=18.7
Q ss_pred CCCCccccccCCCCCCCCCCCC
Q 023361 262 PPDEYSWRKYGQKPIKGSPYPR 283 (283)
Q Consensus 262 ~~DgysWRKYGQK~Ikgsp~PR 283 (283)
++|||.|||||||.|+|++|||
T Consensus 1 ~~Dgy~WRKYGqK~i~g~~~pR 22 (60)
T PF03106_consen 1 LDDGYRWRKYGQKNIKGSPYPR 22 (60)
T ss_dssp --SSS-EEEEEEEEETTTTCEE
T ss_pred CCCCCchhhccCcccCCCceee
Confidence 4899999999999999999998
No 4
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=84.80 E-value=1.1 Score=34.53 Aligned_cols=50 Identities=28% Similarity=0.397 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCCCCC----Cch-hhhHHHHHhhhhhhhhhcCCcCc--cccccCC
Q 023361 29 SMEHLIRLMSHHQSSNH----VDC-SDLTDLTVSKFKKVISLLNRTGH--ARFRRGP 78 (283)
Q Consensus 29 S~e~li~LLSq~~~q~~----~d~-~~~td~AVskFKkVISLL~RtGH--ARFRR~P 78 (283)
.++.||++||++-.-.+ ... ..++-.-|..|++-+=.||.+|| +|+|=+-
T Consensus 2 ~~~~fIrlLs~~~s~~~Aa~~lG~~~~~v~~wv~~fR~wll~LDPSG~~E~RVRLg~ 58 (65)
T PF05344_consen 2 KARAFIRLLSQQISVAQAADRLGTDPGTVRRWVRMFRQWLLQLDPSGHWEARVRLGV 58 (65)
T ss_pred cHHHHHHHhcccccHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCCChHHHhhcCC
Confidence 47899999998732211 110 23355679999999999999998 6777543
No 5
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=53.36 E-value=17 Score=36.12 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 023361 16 QTAIQEAATQGIKSMEHLIRLMSHH 40 (283)
Q Consensus 16 ~~AVqEAAsAGLeS~e~li~LLSq~ 40 (283)
..|+++.....+++++++..+|+..
T Consensus 256 ~eAL~~lt~dTv~~s~rv~~VLse~ 280 (357)
T cd00686 256 HEALEKLTQDTLHSSKQMVAVFSDK 280 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3678878888899999999999864
No 6
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.11 E-value=14 Score=34.68 Aligned_cols=12 Identities=75% Similarity=0.988 Sum_probs=9.5
Q ss_pred hhhhcCCcCccc
Q 023361 62 VISLLNRTGHAR 73 (283)
Q Consensus 62 VISLL~RtGHAR 73 (283)
|=+.||||||||
T Consensus 173 v~~alnrtGH~r 184 (225)
T PF09883_consen 173 VRAALNRTGHAR 184 (225)
T ss_pred HHHHHHhccccc
Confidence 445679999998
No 7
>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.64 E-value=13 Score=31.67 Aligned_cols=8 Identities=50% Similarity=1.003 Sum_probs=7.3
Q ss_pred CCCccccc
Q 023361 263 PDEYSWRK 270 (283)
Q Consensus 263 ~DgysWRK 270 (283)
.|||.|||
T Consensus 52 kDG~~WrK 59 (118)
T PF03859_consen 52 KDGHNWRK 59 (118)
T ss_pred cccceeEE
Confidence 69999998
No 8
>PF08257 Sulfakinin: Sulfakinin family; InterPro: IPR013259 The sulfakinin (SK) family of neuropeptides have only been identified in crustaceans and insects. For most species there is the potential for producing two sulfakinin peptides, one has a short sulfakinin sequence. The function of the sulfakinins is difficult to assess. For the Periplaneta americana (American cockroach), various forms of the endogenous sulfakinins have been shown to be active on the hindgut, and also on the heart. In Calliphora vomitoria (Blue blowfly) the peptides act as neurotransmitters or neuromodulators, linking the brain with all thoracic and abdominal ganglia. In adults of Penaeus monodon (Penoeid shrimp) they appear to be restricted to a few neurones in the brain with a neural pathway extending along to the ventral thoracic and abdominal ganglia [].
Probab=25.62 E-value=26 Score=17.58 Aligned_cols=6 Identities=67% Similarity=1.204 Sum_probs=4.9
Q ss_pred cCcccc
Q 023361 69 TGHARF 74 (283)
Q Consensus 69 tGHARF 74 (283)
-||-||
T Consensus 4 yghmrf 9 (9)
T PF08257_consen 4 YGHMRF 9 (9)
T ss_pred cccccC
Confidence 589887
No 9
>COG4044 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.23 E-value=29 Score=32.70 Aligned_cols=12 Identities=58% Similarity=0.883 Sum_probs=9.8
Q ss_pred hhhhcCCcCccc
Q 023361 62 VISLLNRTGHAR 73 (283)
Q Consensus 62 VISLL~RtGHAR 73 (283)
+=+.||||||+|
T Consensus 185 i~ral~rtGh~R 196 (247)
T COG4044 185 IERALNRTGHGR 196 (247)
T ss_pred HHHHHHhccCCc
Confidence 446789999998
No 10
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=21.48 E-value=37 Score=30.32 Aligned_cols=10 Identities=50% Similarity=0.777 Sum_probs=4.5
Q ss_pred CccccccCCC
Q 023361 265 EYSWRKYGQK 274 (283)
Q Consensus 265 gysWRKYGQK 274 (283)
|..||-||||
T Consensus 171 ~I~lR~y~Qk 180 (214)
T PF07516_consen 171 GIGLRSYGQK 180 (214)
T ss_dssp HCTCTTSSSS
T ss_pred HHHHHhHccC
Confidence 3344444444
No 11
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=21.46 E-value=92 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=17.7
Q ss_pred eeccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 023361 3 VELMGFPKRMMEDQTAIQEAATQGIKSMEHL 33 (283)
Q Consensus 3 vdlm~~~~~~mee~~AVqEAAsAGLeS~e~l 33 (283)
+||+|-++.+.| .|+++|..-|-+++++|
T Consensus 9 IelvGtSp~S~d--~Ai~~Ai~RA~~t~~~l 37 (71)
T COG3360 9 IELVGTSPTSID--AAIANAIARAADTLDNL 37 (71)
T ss_pred EEEEecCCccHH--HHHHHHHHHHHhhhhcc
Confidence 688887774444 36666655555565543
No 12
>PHA03141 helicase-primase primase subunit; Provisional
Probab=20.48 E-value=1.1e+02 Score=25.60 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=16.4
Q ss_pred chhhhHHHHHhhhhhhhhhc
Q 023361 47 DCSDLTDLTVSKFKKVISLL 66 (283)
Q Consensus 47 d~~~~td~AVskFKkVISLL 66 (283)
.....++--+..||||.+||
T Consensus 82 ~~~~~~~~~le~~~~iL~L~ 101 (101)
T PHA03141 82 TINKETDHKLEGFKKILCLL 101 (101)
T ss_pred cchHHHHHHHHHHHHHHhhC
Confidence 34566777999999999996
Done!