Query 023361
Match_columns 283
No_of_seqs 215 out of 482
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 05:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 99.5 5.3E-15 1.8E-19 114.0 1.0 30 254-283 6-35 (76)
2 1wj2_A Probable WRKY transcrip 99.5 8.7E-15 3E-19 113.3 1.6 34 250-283 5-38 (78)
3 3iot_A Maltose-binding protein 18.9 71 0.0024 29.1 3.2 19 47-65 356-374 (449)
4 2cc6_A VNG1446H, dodecin; flav 12.6 33 0.0011 25.5 -0.7 20 3-24 6-25 (68)
5 2ux9_A Dodecin; flavoprotein; 11.9 34 0.0012 25.5 -0.8 22 3-26 8-29 (69)
6 2yiz_A Dodecin; flavoprotein, 11.7 35 0.0012 25.4 -0.8 20 3-24 8-27 (69)
7 3onr_A Protein transport prote 11.2 41 0.0014 25.3 -0.6 13 3-15 8-20 (72)
8 3u5c_c S33, YS27, 40S ribosoma 11.1 27 0.00094 26.1 -1.5 15 58-72 8-22 (67)
9 3rgh_A Filamin-A; cell adhesio 10.7 57 0.0019 24.6 0.1 15 267-281 79-93 (100)
10 1ne3_A 30S ribosomal protein S 10.7 40 0.0014 25.3 -0.8 13 58-70 5-17 (68)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.47 E-value=5.3e-15 Score=114.01 Aligned_cols=30 Identities=60% Similarity=1.145 Sum_probs=27.0
Q ss_pred ccCCCcCCCCCCccccccCCCCCCCCCCCC
Q 023361 254 ISSKIADIPPDEYSWRKYGQKPIKGSPYPR 283 (283)
Q Consensus 254 ~s~~~~~~~~DgysWRKYGQK~Ikgsp~PR 283 (283)
.+..+.++++|||.|||||||.||||+|||
T Consensus 6 ~t~~~~~~~~DGy~WRKYGQK~ikgs~~PR 35 (76)
T 2ayd_A 6 HTQTLFDIVNDGYRWRKYGQKSVKGSPYPR 35 (76)
T ss_dssp EEECSSSCCCCSSCEEEEEEECCTTCSSCE
T ss_pred EecCCCCcCCCCchhhhCcccccCCCCCce
Confidence 344578999999999999999999999998
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.46 E-value=8.7e-15 Score=113.29 Aligned_cols=34 Identities=47% Similarity=0.921 Sum_probs=28.3
Q ss_pred EEecccCCCcCCCCCCccccccCCCCCCCCCCCC
Q 023361 250 RVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPR 283 (283)
Q Consensus 250 rv~~~s~~~~~~~~DgysWRKYGQK~Ikgsp~PR 283 (283)
+|...+..+.++++|||.|||||||.|||++|||
T Consensus 5 ~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PR 38 (78)
T 1wj2_A 5 SSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 38 (78)
T ss_dssp ---CCCCCCCCCCCSSSCBCCCEEECCTTCSSCE
T ss_pred eEEEeccCCCCcCCCCchhhhCcccccCCCcCee
Confidence 4455566678999999999999999999999998
No 3
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=18.91 E-value=71 Score=29.13 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=10.3
Q ss_pred chhhhHHHHHhhhhhhhhh
Q 023361 47 DCSDLTDLTVSKFKKVISL 65 (283)
Q Consensus 47 d~~~~td~AVskFKkVISL 65 (283)
+..+..+.+..+.++++.+
T Consensus 356 ~~eeal~~~~~~~~~i~~~ 374 (449)
T 3iot_A 356 TVDAALAAAQTNAAAMATL 374 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhh
Confidence 4455555555555555544
No 4
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=12.55 E-value=33 Score=25.51 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=10.7
Q ss_pred eeccCCCCCchhhHHHHHHHHH
Q 023361 3 VELMGFPKRMMEDQTAIQEAAT 24 (283)
Q Consensus 3 vdlm~~~~~~mee~~AVqEAAs 24 (283)
+||.|-+..+.|| ||+.|-.
T Consensus 6 iElvGsS~~S~ed--Ai~nAi~ 25 (68)
T 2cc6_A 6 VLLTGTSEESFTA--AADDAID 25 (68)
T ss_dssp EEEEEEESSCHHH--HHHHHHH
T ss_pred EEEEECCCCCHHH--HHHHHHH
Confidence 5777766544443 4444433
No 5
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=11.89 E-value=34 Score=25.46 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=11.6
Q ss_pred eeccCCCCCchhhHHHHHHHHHHH
Q 023361 3 VELMGFPKRMMEDQTAIQEAATQG 26 (283)
Q Consensus 3 vdlm~~~~~~mee~~AVqEAAsAG 26 (283)
+||.|-+..+.|| ||+.|-..|
T Consensus 8 iElvGsS~~S~ed--Ai~nAi~~A 29 (69)
T 2ux9_A 8 VELVGTSEEGLEA--AIQAALARA 29 (69)
T ss_dssp EEEEEEESSCHHH--HHHHHHHHH
T ss_pred EEEEECCCCCHHH--HHHHHHHHH
Confidence 5777766544444 444443333
No 6
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=11.71 E-value=35 Score=25.40 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=10.7
Q ss_pred eeccCCCCCchhhHHHHHHHHH
Q 023361 3 VELMGFPKRMMEDQTAIQEAAT 24 (283)
Q Consensus 3 vdlm~~~~~~mee~~AVqEAAs 24 (283)
+||.|-+..+.|| ||+.|-.
T Consensus 8 iElvGsS~~S~ed--Ai~nAi~ 27 (69)
T 2yiz_A 8 IEIVGTSPDGVDA--AIQGGLA 27 (69)
T ss_dssp EEEEEEETTCHHH--HHHHHHH
T ss_pred EEEEECCCCCHHH--HHHHHHH
Confidence 5777766544443 4444433
No 7
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=11.18 E-value=41 Score=25.25 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=7.7
Q ss_pred eeccCCCCCchhh
Q 023361 3 VELMGFPKRMMED 15 (283)
Q Consensus 3 vdlm~~~~~~mee 15 (283)
+||+|-+..+.||
T Consensus 8 iElvGsS~~S~ed 20 (72)
T 3onr_A 8 IDIIGTSPTSWEQ 20 (72)
T ss_dssp EEEEEEESSCHHH
T ss_pred EEEEECCCCCHHH
Confidence 5777766544443
No 8
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=11.10 E-value=27 Score=26.08 Aligned_cols=15 Identities=47% Similarity=0.702 Sum_probs=12.3
Q ss_pred hhhhhhhhcCCcCcc
Q 023361 58 KFKKVISLLNRTGHA 72 (283)
Q Consensus 58 kFKkVISLL~RtGHA 72 (283)
++-+||.+|+|||+.
T Consensus 8 ~~A~VikVlGRtGs~ 22 (67)
T 3u5c_c 8 TLAKVIKVLGRTGSR 22 (67)
T ss_dssp EEEEEEEEEEEESSS
T ss_pred EEEEEEEEecCCcCc
Confidence 567899999999864
No 9
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=10.72 E-value=57 Score=24.55 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=13.5
Q ss_pred cccccCCCCCCCCCC
Q 023361 267 SWRKYGQKPIKGSPY 281 (283)
Q Consensus 267 sWRKYGQK~Ikgsp~ 281 (283)
-+=|||-+.|.||||
T Consensus 79 i~V~~~g~~V~gSPf 93 (100)
T 3rgh_A 79 VTIKYGGQPVPNFPS 93 (100)
T ss_dssp EEEEETTEECTTCSE
T ss_pred EEEEECCEECCCCCE
Confidence 577999999999998
No 10
>1ne3_A 30S ribosomal protein S28E; beta protein, structural genomics, OCSP, NESG, protein structure initiative, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: b.40.4.5
Probab=10.66 E-value=40 Score=25.28 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=10.2
Q ss_pred hhhhhhhhcCCcC
Q 023361 58 KFKKVISLLNRTG 70 (283)
Q Consensus 58 kFKkVISLL~RtG 70 (283)
++-+||.+|+|||
T Consensus 5 ~~A~V~kVlGRTG 17 (68)
T 1ne3_A 5 TPAEVIEVLKRTG 17 (68)
T ss_dssp EEEEEEEEECCSS
T ss_pred eEEEEEEEeCccc
Confidence 3567888899887
Done!