Query 023364
Match_columns 283
No_of_seqs 315 out of 2216
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0691 Molecular chaperone (D 99.9 3.5E-27 7.6E-32 216.5 7.1 256 3-280 2-275 (296)
2 COG0484 DnaJ DnaJ-class molecu 99.9 4.7E-23 1E-27 193.7 6.6 75 3-82 1-75 (371)
3 KOG0713 Molecular chaperone (D 99.9 1.5E-22 3.2E-27 186.3 7.2 70 4-78 14-83 (336)
4 PRK14288 chaperone protein Dna 99.8 1.8E-19 3.9E-24 171.8 7.1 69 5-78 2-70 (369)
5 PRK14279 chaperone protein Dna 99.8 7.2E-19 1.6E-23 168.8 7.2 71 3-78 6-76 (392)
6 PRK14296 chaperone protein Dna 99.8 1.1E-18 2.4E-23 166.5 6.8 68 5-78 3-70 (372)
7 KOG0712 Molecular chaperone (D 99.7 1.8E-18 3.9E-23 160.9 7.3 67 4-78 2-68 (337)
8 KOG0716 Molecular chaperone (D 99.7 2.1E-18 4.5E-23 154.6 6.5 71 4-79 29-99 (279)
9 PRK14286 chaperone protein Dna 99.7 2.4E-18 5.3E-23 164.2 7.1 69 5-78 3-71 (372)
10 PRK14277 chaperone protein Dna 99.7 8.9E-18 1.9E-22 161.1 7.4 70 4-78 3-72 (386)
11 PRK14285 chaperone protein Dna 99.7 9.2E-18 2E-22 159.8 7.0 69 5-78 2-70 (365)
12 PRK14282 chaperone protein Dna 99.7 1.2E-17 2.5E-22 159.4 6.9 70 4-78 2-72 (369)
13 PRK14294 chaperone protein Dna 99.7 1.3E-17 2.9E-22 158.8 7.3 70 4-78 2-71 (366)
14 PF00226 DnaJ: DnaJ domain; I 99.7 1.5E-17 3.2E-22 119.7 5.6 63 7-74 1-64 (64)
15 PRK14301 chaperone protein Dna 99.7 1.4E-17 3E-22 159.1 6.8 69 5-78 3-71 (373)
16 KOG0718 Molecular chaperone (D 99.7 6.2E-18 1.3E-22 160.7 4.2 72 2-78 5-79 (546)
17 PRK14297 chaperone protein Dna 99.7 1.5E-17 3.3E-22 159.2 6.6 69 5-78 3-71 (380)
18 PRK14295 chaperone protein Dna 99.7 2E-17 4.2E-22 158.8 7.2 66 5-75 8-73 (389)
19 PRK14287 chaperone protein Dna 99.7 2E-17 4.4E-22 157.8 7.2 68 5-78 3-70 (371)
20 PRK14283 chaperone protein Dna 99.7 2.1E-17 4.4E-22 158.2 7.2 69 4-78 3-71 (378)
21 PRK14276 chaperone protein Dna 99.7 2.1E-17 4.5E-22 158.2 6.7 68 5-78 3-70 (380)
22 KOG0717 Molecular chaperone (D 99.7 2.2E-17 4.8E-22 156.9 6.4 71 3-78 5-76 (508)
23 PTZ00037 DnaJ_C chaperone prot 99.7 2.1E-17 4.5E-22 159.8 6.3 66 4-78 26-91 (421)
24 PRK14299 chaperone protein Dna 99.7 3E-17 6.5E-22 151.9 6.9 68 5-78 3-70 (291)
25 PRK14284 chaperone protein Dna 99.7 2.7E-17 5.9E-22 158.0 6.8 68 6-78 1-68 (391)
26 PRK10767 chaperone protein Dna 99.7 3.4E-17 7.3E-22 156.3 7.1 70 4-78 2-71 (371)
27 PRK14278 chaperone protein Dna 99.7 3E-17 6.4E-22 157.0 6.8 68 5-78 2-69 (378)
28 PRK14291 chaperone protein Dna 99.7 3E-17 6.6E-22 157.2 6.8 68 5-78 2-69 (382)
29 PRK14281 chaperone protein Dna 99.7 3.9E-17 8.4E-22 157.2 6.8 69 5-78 2-70 (397)
30 PRK14298 chaperone protein Dna 99.7 3.7E-17 8E-22 156.3 6.3 68 5-78 4-71 (377)
31 PRK14280 chaperone protein Dna 99.7 5.4E-17 1.2E-21 155.2 6.8 68 5-78 3-70 (376)
32 PRK14289 chaperone protein Dna 99.7 9.3E-17 2E-21 154.0 7.5 70 4-78 3-72 (386)
33 PRK14290 chaperone protein Dna 99.6 2E-16 4.3E-21 150.7 6.3 68 6-78 3-71 (365)
34 KOG0715 Molecular chaperone (D 99.6 4.6E-16 9.9E-21 143.6 7.0 70 5-80 42-111 (288)
35 TIGR02349 DnaJ_bact chaperone 99.6 3.4E-16 7.4E-21 148.5 6.3 66 7-78 1-66 (354)
36 PRK14300 chaperone protein Dna 99.6 3.9E-16 8.4E-21 149.1 6.5 67 6-78 3-69 (372)
37 PRK10266 curved DNA-binding pr 99.6 5.3E-16 1.2E-20 144.5 7.0 67 5-77 3-69 (306)
38 PTZ00341 Ring-infected erythro 99.6 4.6E-16 9.9E-21 159.2 7.1 71 3-79 570-640 (1136)
39 PRK14293 chaperone protein Dna 99.6 6.3E-16 1.4E-20 147.7 6.8 68 5-78 2-69 (374)
40 PRK14292 chaperone protein Dna 99.6 6E-16 1.3E-20 147.7 6.4 67 6-78 2-68 (371)
41 smart00271 DnaJ DnaJ molecular 99.6 1.3E-15 2.7E-20 107.9 6.3 58 6-68 1-59 (60)
42 KOG0719 Molecular chaperone (D 99.6 5.4E-16 1.2E-20 136.3 4.9 72 4-80 12-85 (264)
43 cd06257 DnaJ DnaJ domain or J- 99.6 2.8E-15 6E-20 104.2 6.3 55 7-66 1-55 (55)
44 PRK05014 hscB co-chaperone Hsc 99.6 1.9E-14 4.1E-19 123.5 10.4 96 6-106 1-101 (171)
45 COG2214 CbpA DnaJ-class molecu 99.6 5.5E-15 1.2E-19 128.0 6.6 72 1-77 1-73 (237)
46 KOG0721 Molecular chaperone (D 99.5 1.4E-14 3E-19 126.3 6.2 69 5-78 98-166 (230)
47 PRK03578 hscB co-chaperone Hsc 99.5 1.4E-13 3E-18 118.6 11.9 100 2-106 2-106 (176)
48 PRK00294 hscB co-chaperone Hsc 99.5 1.9E-13 4.1E-18 117.4 11.7 97 4-106 2-103 (173)
49 PRK01356 hscB co-chaperone Hsc 99.5 1.6E-13 3.6E-18 117.1 10.8 97 6-106 2-101 (166)
50 TIGR03835 termin_org_DnaJ term 99.5 6.4E-14 1.4E-18 140.8 7.0 68 6-79 2-69 (871)
51 KOG1150 Predicted molecular ch 99.4 3.1E-12 6.6E-17 110.4 13.3 70 4-78 51-121 (250)
52 PHA03102 Small T antigen; Revi 99.4 1.2E-13 2.7E-18 116.0 3.8 64 6-78 5-70 (153)
53 KOG0720 Molecular chaperone (D 99.4 9.4E-13 2E-17 125.6 9.0 69 4-78 233-301 (490)
54 KOG0722 Molecular chaperone (D 99.3 1.1E-12 2.3E-17 117.0 3.6 72 5-82 32-103 (329)
55 KOG0624 dsRNA-activated protei 99.3 3E-12 6.6E-17 119.0 4.3 68 4-76 392-462 (504)
56 KOG0714 Molecular chaperone (D 99.2 1.8E-11 3.8E-16 110.9 3.6 69 5-78 2-71 (306)
57 PRK01773 hscB co-chaperone Hsc 99.2 4.2E-10 9.2E-15 96.7 11.7 96 6-106 2-103 (173)
58 KOG0550 Molecular chaperone (D 99.1 3.2E-11 7E-16 114.3 4.0 68 5-77 372-440 (486)
59 PRK09430 djlA Dna-J like membr 99.1 6.2E-11 1.4E-15 108.6 5.2 56 6-66 200-262 (267)
60 PTZ00100 DnaJ chaperone protei 99.1 8.8E-11 1.9E-15 94.2 4.5 52 5-65 64-115 (116)
61 PHA02624 large T antigen; Prov 99.0 3.7E-10 8E-15 112.6 5.3 59 6-73 11-71 (647)
62 TIGR00714 hscB Fe-S protein as 99.0 5.2E-09 1.1E-13 88.7 11.1 83 22-106 2-89 (157)
63 PF13893 RRM_5: RNA recognitio 98.9 2.6E-09 5.7E-14 74.3 6.3 54 186-240 1-56 (56)
64 KOG0122 Translation initiation 98.9 2.8E-09 6.1E-14 94.7 7.9 74 167-242 189-268 (270)
65 COG5269 ZUO1 Ribosome-associat 98.9 7.5E-10 1.6E-14 99.7 3.8 73 2-76 39-113 (379)
66 COG5407 SEC63 Preprotein trans 98.9 9E-10 2E-14 105.2 4.0 68 5-77 97-169 (610)
67 PLN03134 glycine-rich RNA-bind 98.8 2.1E-08 4.6E-13 83.7 8.7 71 172-242 37-113 (144)
68 KOG0114 Predicted RNA-binding 98.8 3.9E-08 8.5E-13 77.1 8.0 68 175-242 24-94 (124)
69 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.7 5.8E-08 1.3E-12 91.1 8.8 70 172-241 272-347 (352)
70 PLN03120 nucleic acid binding 98.7 3.4E-07 7.3E-12 83.0 12.5 67 175-241 10-78 (260)
71 PF00076 RRM_1: RNA recognitio 98.6 1.8E-07 3.9E-12 66.7 7.0 53 177-229 6-61 (70)
72 KOG0144 RNA-binding protein CU 98.6 5E-08 1.1E-12 92.8 4.7 68 175-242 130-205 (510)
73 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.5 2.5E-07 5.3E-12 86.9 8.2 68 175-242 9-82 (352)
74 KOG0149 Predicted RNA-binding 98.5 3.2E-07 7E-12 81.3 6.5 56 171-226 14-73 (247)
75 TIGR01659 sex-lethal sex-letha 98.5 5.8E-07 1.2E-11 85.4 8.8 68 175-242 113-186 (346)
76 TIGR01659 sex-lethal sex-letha 98.5 6.6E-07 1.4E-11 85.0 8.9 71 172-242 196-274 (346)
77 KOG0107 Alternative splicing f 98.4 4.2E-07 9.1E-12 77.4 6.4 70 171-241 12-83 (195)
78 smart00360 RRM RNA recognition 98.4 8.6E-07 1.9E-11 61.8 7.0 59 179-237 6-70 (71)
79 KOG0130 RNA-binding protein RB 98.4 5E-07 1.1E-11 74.0 6.1 66 177-242 80-153 (170)
80 PLN03121 nucleic acid binding 98.4 1.1E-06 2.4E-11 78.7 8.7 67 175-241 11-79 (243)
81 smart00361 RRM_1 RNA recogniti 98.4 7.1E-07 1.5E-11 65.1 5.8 49 183-231 2-61 (70)
82 KOG0125 Ataxin 2-binding prote 98.4 6E-07 1.3E-11 83.0 6.6 77 163-241 92-172 (376)
83 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.4 1.3E-06 2.7E-11 86.4 9.3 74 169-242 96-173 (481)
84 TIGR01645 half-pint poly-U bin 98.4 2.4E-06 5.2E-11 86.3 11.3 65 175-239 113-183 (612)
85 KOG4206 Spliceosomal protein s 98.4 1.1E-06 2.3E-11 77.6 7.2 68 175-242 15-89 (221)
86 PF14259 RRM_6: RNA recognitio 98.3 2.1E-06 4.5E-11 61.8 7.2 52 177-228 6-60 (70)
87 TIGR01645 half-pint poly-U bin 98.3 2.3E-06 4.9E-11 86.4 9.8 65 177-241 212-282 (612)
88 TIGR01628 PABP-1234 polyadenyl 98.3 2.1E-06 4.5E-11 86.2 8.9 67 175-241 291-362 (562)
89 KOG4207 Predicted splicing fac 98.3 9.8E-07 2.1E-11 77.0 5.6 71 169-239 13-89 (256)
90 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.3 1.8E-06 4E-11 85.3 8.0 65 176-242 9-77 (481)
91 TIGR01628 PABP-1234 polyadenyl 98.3 2.6E-06 5.6E-11 85.5 8.5 67 176-242 7-79 (562)
92 smart00362 RRM_2 RNA recogniti 98.3 4.5E-06 9.9E-11 58.4 7.3 53 177-229 7-61 (72)
93 KOG0105 Alternative splicing f 98.2 2E-06 4.3E-11 74.0 5.4 72 170-241 7-81 (241)
94 KOG1789 Endocytosis protein RM 98.2 1.5E-06 3.3E-11 90.3 5.6 61 1-65 1276-1336(2235)
95 KOG0113 U1 small nuclear ribon 98.2 6E-06 1.3E-10 75.6 8.7 70 167-238 101-176 (335)
96 TIGR01622 SF-CC1 splicing fact 98.2 4.3E-06 9.4E-11 81.4 8.1 67 175-241 192-264 (457)
97 cd00590 RRM RRM (RNA recogniti 98.2 1.2E-05 2.5E-10 56.6 8.2 62 177-238 7-73 (74)
98 TIGR01622 SF-CC1 splicing fact 98.1 6.3E-06 1.4E-10 80.3 8.0 72 168-241 90-166 (457)
99 TIGR01642 U2AF_lg U2 snRNP aux 98.1 8.5E-06 1.8E-10 80.4 8.5 67 175-241 301-373 (509)
100 KOG0148 Apoptosis-promoting RN 98.1 5.6E-06 1.2E-10 74.9 5.8 64 177-242 172-237 (321)
101 KOG3192 Mitochondrial J-type c 98.0 4E-05 8.7E-10 64.2 9.6 133 4-143 6-143 (168)
102 KOG0144 RNA-binding protein CU 98.0 6.4E-06 1.4E-10 78.7 5.4 73 169-241 34-115 (510)
103 KOG0121 Nuclear cap-binding pr 98.0 1.3E-05 2.8E-10 65.3 6.0 66 175-240 42-113 (153)
104 TIGR01648 hnRNP-R-Q heterogene 98.0 2.3E-05 4.9E-10 79.0 8.1 64 176-243 240-307 (578)
105 COG0724 RNA-binding proteins ( 98.0 3.4E-05 7.3E-10 67.3 8.4 67 175-241 121-193 (306)
106 TIGR01648 hnRNP-R-Q heterogene 97.9 2.4E-05 5.1E-10 78.9 7.4 59 172-230 61-122 (578)
107 KOG0117 Heterogeneous nuclear 97.9 2.9E-05 6.2E-10 74.6 7.2 75 165-243 254-331 (506)
108 PLN03213 repressor of silencin 97.9 4.5E-05 9.7E-10 74.1 8.2 73 170-242 11-87 (759)
109 KOG0146 RNA-binding protein ET 97.9 2.4E-05 5.3E-10 70.8 5.9 58 177-234 27-87 (371)
110 KOG0568 Molecular chaperone (D 97.9 1.6E-05 3.4E-10 70.7 4.5 56 6-67 47-103 (342)
111 TIGR01642 U2AF_lg U2 snRNP aux 97.9 2.7E-05 5.9E-10 76.8 6.6 60 183-242 433-501 (509)
112 KOG0148 Apoptosis-promoting RN 97.8 5E-05 1.1E-09 68.9 6.8 64 177-240 70-139 (321)
113 KOG0123 Polyadenylate-binding 97.8 7.1E-05 1.5E-09 71.7 7.9 73 168-241 65-151 (369)
114 PF15023 DUF4523: Protein of u 97.8 0.00011 2.4E-09 60.9 7.7 75 165-242 84-161 (166)
115 KOG0127 Nucleolar protein fibr 97.7 5.3E-05 1.1E-09 74.4 6.4 60 181-240 129-193 (678)
116 KOG0111 Cyclophilin-type pepti 97.7 4.1E-05 8.9E-10 67.6 4.6 67 177-243 18-90 (298)
117 KOG0117 Heterogeneous nuclear 97.7 8.3E-05 1.8E-09 71.5 6.4 66 175-240 89-161 (506)
118 KOG0147 Transcriptional coacti 97.6 0.00025 5.4E-09 69.7 8.5 66 177-242 286-357 (549)
119 KOG0108 mRNA cleavage and poly 97.6 0.00017 3.6E-09 70.4 7.1 71 171-241 20-96 (435)
120 KOG0145 RNA-binding protein EL 97.5 0.00028 6E-09 63.9 7.5 61 179-239 288-354 (360)
121 KOG0145 RNA-binding protein EL 97.5 0.00027 5.8E-09 64.0 7.4 68 175-242 47-120 (360)
122 KOG0131 Splicing factor 3b, su 97.5 0.00016 3.5E-09 62.2 5.7 67 175-241 15-87 (203)
123 KOG0153 Predicted RNA-binding 97.5 0.00036 7.7E-09 65.3 7.7 64 177-242 236-302 (377)
124 KOG0126 Predicted RNA-binding 97.5 1.7E-05 3.6E-10 68.2 -1.0 64 177-240 43-112 (219)
125 KOG0415 Predicted peptidyl pro 97.5 0.00039 8.5E-09 65.3 7.7 65 177-241 247-317 (479)
126 KOG0132 RNA polymerase II C-te 97.4 0.00039 8.4E-09 70.8 6.6 62 177-240 429-492 (894)
127 KOG4208 Nucleolar RNA-binding 97.2 0.0007 1.5E-08 59.3 6.1 66 177-242 57-129 (214)
128 KOG0124 Polypyrimidine tract-b 97.2 0.00037 8.1E-09 65.7 4.6 60 179-238 123-188 (544)
129 KOG0131 Splicing factor 3b, su 97.2 0.00075 1.6E-08 58.2 5.7 72 170-241 97-175 (203)
130 KOG0123 Polyadenylate-binding 97.2 0.00083 1.8E-08 64.5 6.5 64 179-242 8-74 (369)
131 KOG0723 Molecular chaperone (D 97.1 0.00091 2E-08 52.7 5.1 48 11-67 61-108 (112)
132 KOG0109 RNA-binding protein LA 97.1 0.00056 1.2E-08 62.8 4.1 67 171-241 4-72 (346)
133 KOG0127 Nucleolar protein fibr 96.9 0.0015 3.3E-08 64.5 6.0 68 175-242 11-84 (678)
134 KOG1190 Polypyrimidine tract-b 96.9 0.0028 6E-08 60.7 7.6 64 177-241 306-371 (492)
135 KOG0110 RNA-binding protein (R 96.9 0.0022 4.8E-08 64.9 7.0 65 177-241 523-596 (725)
136 KOG0533 RRM motif-containing p 96.7 0.0072 1.6E-07 54.7 8.1 76 169-244 83-163 (243)
137 KOG0124 Polypyrimidine tract-b 96.7 0.0053 1.2E-07 58.1 7.4 65 175-239 216-286 (544)
138 KOG0151 Predicted splicing reg 96.7 0.013 2.9E-07 59.5 10.5 67 175-241 180-255 (877)
139 KOG4661 Hsp27-ERE-TATA-binding 96.5 0.0043 9.3E-08 61.6 5.3 60 181-240 417-482 (940)
140 KOG0110 RNA-binding protein (R 96.3 0.0042 9.2E-08 62.9 4.5 66 177-242 621-692 (725)
141 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.0078 1.7E-07 41.7 4.5 40 183-224 14-53 (53)
142 KOG0146 RNA-binding protein ET 96.3 0.0057 1.2E-07 55.8 4.7 52 180-231 296-351 (371)
143 KOG0431 Auxilin-like protein a 96.1 0.0066 1.4E-07 59.8 4.6 42 23-64 400-448 (453)
144 KOG1456 Heterogeneous nuclear 96.0 0.027 5.9E-07 53.6 7.9 74 168-242 121-198 (494)
145 PF08777 RRM_3: RNA binding mo 96.0 0.026 5.6E-07 44.6 6.5 54 171-226 3-56 (105)
146 KOG4660 Protein Mei2, essentia 95.8 0.0069 1.5E-07 59.9 3.3 56 169-227 77-132 (549)
147 COG1076 DjlA DnaJ-domain-conta 95.8 0.0047 1E-07 53.1 1.9 69 7-78 2-75 (174)
148 KOG0109 RNA-binding protein LA 95.8 0.012 2.7E-07 54.1 4.7 58 180-241 89-148 (346)
149 KOG0116 RasGAP SH3 binding pro 95.8 0.012 2.6E-07 57.3 4.9 54 174-227 293-350 (419)
150 KOG2314 Translation initiation 95.8 0.012 2.7E-07 58.3 4.9 51 181-231 76-129 (698)
151 KOG4209 Splicing factor RNPS1, 95.7 0.025 5.5E-07 50.9 6.2 69 173-241 105-178 (231)
152 KOG0147 Transcriptional coacti 95.4 0.016 3.4E-07 57.4 4.1 62 180-241 190-256 (549)
153 KOG4205 RNA-binding protein mu 95.4 0.012 2.6E-07 55.2 3.1 48 179-226 16-67 (311)
154 KOG4205 RNA-binding protein mu 95.2 0.025 5.4E-07 53.1 4.6 73 169-241 97-174 (311)
155 KOG4212 RNA-binding protein hn 95.2 0.061 1.3E-06 52.2 7.2 65 175-239 50-120 (608)
156 KOG0106 Alternative splicing f 95.0 0.014 3.1E-07 51.8 2.3 60 178-241 10-71 (216)
157 COG1076 DjlA DnaJ-domain-conta 94.9 0.021 4.6E-07 49.0 3.0 54 6-64 113-173 (174)
158 KOG1456 Heterogeneous nuclear 94.6 0.12 2.6E-06 49.3 7.3 66 174-240 293-360 (494)
159 KOG1548 Transcription elongati 94.6 0.068 1.5E-06 50.4 5.6 74 166-239 264-348 (382)
160 KOG4454 RNA binding protein (R 94.4 0.047 1E-06 48.6 4.0 72 166-239 8-83 (267)
161 KOG1457 RNA binding protein (c 93.4 0.13 2.9E-06 46.0 4.8 55 177-231 218-272 (284)
162 KOG1855 Predicted RNA-binding 92.7 0.072 1.6E-06 51.5 2.3 47 180-226 242-305 (484)
163 KOG0106 Alternative splicing f 92.5 0.077 1.7E-06 47.2 2.0 57 178-238 108-166 (216)
164 KOG1190 Polypyrimidine tract-b 91.8 0.19 4.1E-06 48.5 3.9 71 170-240 151-225 (492)
165 PF08675 RNA_bind: RNA binding 91.3 0.74 1.6E-05 35.0 5.9 44 180-227 19-62 (87)
166 PF05172 Nup35_RRM: Nup53/35/4 91.1 0.53 1.2E-05 36.9 5.2 46 182-227 18-74 (100)
167 KOG2135 Proteins containing th 90.8 0.37 8.1E-06 47.2 4.9 72 169-243 374-446 (526)
168 KOG0226 RNA-binding proteins [ 90.6 0.33 7.2E-06 44.1 4.1 51 181-231 202-256 (290)
169 KOG0120 Splicing factor U2AF, 90.5 0.48 1E-05 47.2 5.4 57 184-240 424-489 (500)
170 PF11608 Limkain-b1: Limkain b 90.3 0.89 1.9E-05 34.7 5.6 53 183-241 20-75 (90)
171 KOG4211 Splicing factor hnRNP- 90.3 1.1 2.4E-05 44.2 7.6 59 177-236 18-78 (510)
172 KOG0115 RNA-binding protein p5 89.4 0.74 1.6E-05 41.9 5.3 74 167-240 21-111 (275)
173 KOG4212 RNA-binding protein hn 88.0 1.3 2.8E-05 43.3 6.2 69 166-238 535-606 (608)
174 KOG2202 U2 snRNP splicing fact 87.8 0.34 7.4E-06 44.0 2.1 57 184-240 84-145 (260)
175 KOG1457 RNA binding protein (c 86.9 5 0.00011 36.1 8.8 72 168-241 35-116 (284)
176 KOG4206 Spliceosomal protein s 86.1 3.3 7.2E-05 37.0 7.3 72 166-240 145-219 (221)
177 KOG1996 mRNA splicing factor [ 85.7 1.5 3.2E-05 40.9 5.0 49 183-231 300-353 (378)
178 KOG0112 Large RNA-binding prot 83.7 1.7 3.7E-05 45.8 5.0 68 173-242 458-530 (975)
179 KOG4211 Splicing factor hnRNP- 83.2 2.6 5.6E-05 41.7 5.8 57 169-227 105-165 (510)
180 KOG4210 Nuclear localization s 81.5 0.96 2.1E-05 42.0 2.1 64 178-241 194-262 (285)
181 PF08952 DUF1866: Domain of un 80.9 2.8 6E-05 35.2 4.4 69 167-239 27-103 (146)
182 PF03656 Pam16: Pam16; InterP 80.4 3.5 7.6E-05 33.8 4.8 47 9-64 61-107 (127)
183 PF04847 Calcipressin: Calcipr 80.2 2.9 6.3E-05 36.4 4.5 58 182-241 8-69 (184)
184 COG5175 MOT2 Transcriptional r 79.9 2.6 5.7E-05 39.9 4.4 40 188-227 139-185 (480)
185 KOG4574 RNA-binding protein (c 79.7 1.9 4.1E-05 45.3 3.7 61 180-242 309-373 (1007)
186 KOG1365 RNA-binding protein Fu 76.7 6.5 0.00014 38.0 6.0 62 166-227 158-226 (508)
187 KOG0128 RNA-binding protein SA 76.6 2.8 6.1E-05 44.0 3.9 47 180-226 747-796 (881)
188 KOG0724 Zuotin and related mol 74.7 3.5 7.6E-05 38.7 3.8 55 23-77 4-62 (335)
189 PF10309 DUF2414: Protein of u 74.6 11 0.00024 26.9 5.4 43 180-226 15-61 (62)
190 KOG0120 Splicing factor U2AF, 73.9 3.5 7.6E-05 41.2 3.6 61 179-239 299-365 (500)
191 PF04059 RRM_2: RNA recognitio 73.8 20 0.00044 27.9 7.2 53 175-227 7-65 (97)
192 KOG4285 Mitotic phosphoprotein 71.6 7.8 0.00017 36.3 5.1 60 171-232 196-257 (350)
193 KOG1548 Transcription elongati 68.7 17 0.00037 34.6 6.7 66 175-240 140-218 (382)
194 PF13446 RPT: A repeated domai 65.1 11 0.00024 26.4 3.7 26 7-37 6-31 (62)
195 KOG3152 TBP-binding protein, a 63.9 5.1 0.00011 36.6 2.2 53 174-226 79-147 (278)
196 PF14687 DUF4460: Domain of un 63.2 17 0.00037 29.0 4.9 27 23-49 6-32 (112)
197 KOG1995 Conserved Zn-finger pr 61.7 9.8 0.00021 36.2 3.8 70 172-242 70-153 (351)
198 PF15513 DUF4651: Domain of un 59.9 15 0.00032 26.3 3.6 33 184-216 9-44 (62)
199 KOG2891 Surface glycoprotein [ 59.0 8.6 0.00019 35.7 2.8 34 169-202 156-194 (445)
200 KOG4676 Splicing factor, argin 58.0 12 0.00026 36.2 3.7 65 176-240 14-86 (479)
201 KOG1029 Endocytic adaptor prot 54.8 59 0.0013 34.5 8.1 9 193-201 457-465 (1118)
202 PF03468 XS: XS domain; Inter 50.5 13 0.00027 29.9 2.2 46 179-224 27-74 (116)
203 KOG2416 Acinus (induces apopto 48.9 10 0.00022 38.6 1.7 55 175-231 450-505 (718)
204 KOG0128 RNA-binding protein SA 47.9 5.3 0.00011 42.1 -0.4 48 180-227 678-729 (881)
205 KOG2068 MOT2 transcription fac 46.9 15 0.00033 34.7 2.4 46 181-226 90-144 (327)
206 KOG0129 Predicted RNA-binding 46.1 73 0.0016 32.0 7.1 65 175-239 376-450 (520)
207 PF02714 DUF221: Domain of unk 40.7 36 0.00079 31.4 4.0 31 210-240 1-31 (325)
208 PF11767 SET_assoc: Histone ly 37.8 1.4E+02 0.0031 21.4 5.9 48 178-230 9-56 (66)
209 KOG4307 RNA binding protein RB 36.0 51 0.0011 34.5 4.4 59 170-229 3-62 (944)
210 KOG4307 RNA binding protein RB 34.6 75 0.0016 33.3 5.3 54 177-230 875-932 (944)
211 KOG1029 Endocytic adaptor prot 32.7 2.5E+02 0.0053 30.1 8.6 8 62-69 334-341 (1118)
212 PF12385 Peptidase_C70: Papain 32.6 49 0.0011 28.3 3.1 21 178-198 93-113 (166)
213 PF11833 DUF3353: Protein of u 32.4 66 0.0014 28.2 4.0 35 22-64 3-37 (194)
214 KOG0129 Predicted RNA-binding 28.7 1.2E+02 0.0025 30.6 5.4 50 177-226 267-325 (520)
215 KOG2318 Uncharacterized conser 26.6 1.5E+02 0.0032 30.4 5.8 34 207-240 268-305 (650)
216 PF08544 GHMP_kinases_C: GHMP 25.3 1.4E+02 0.0029 21.3 4.2 43 183-226 36-78 (85)
217 PF10567 Nab6_mRNP_bdg: RNA-re 25.3 1.7E+02 0.0036 27.5 5.5 63 178-240 24-105 (309)
218 KOG0112 Large RNA-binding prot 24.9 20 0.00044 38.2 -0.5 49 178-226 381-432 (975)
219 KOG0163 Myosin class VI heavy 24.0 9E+02 0.02 26.2 10.8 117 26-146 899-1019(1259)
220 KOG1365 RNA-binding protein Fu 21.9 84 0.0018 30.7 2.9 50 177-226 288-343 (508)
221 PF06936 Selenoprotein_S: Sele 20.8 5.7E+02 0.012 22.3 8.4 23 84-106 79-101 (190)
222 PRK11230 glycolate oxidase sub 20.3 1.9E+02 0.004 29.0 5.2 58 185-242 205-269 (499)
No 1
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.5e-27 Score=216.49 Aligned_cols=256 Identities=30% Similarity=0.387 Sum_probs=163.2
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIKRE 82 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 82 (283)
+.++|||.||||+.+ ++..+|++|||..|++|||||||+||.|.+.|+.|.+||+||+|+.+|..||.++.....
T Consensus 2 ~~~~dyY~lLgi~~~-----at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~ 76 (296)
T KOG0691|consen 2 VKDTDYYDLLGISED-----ATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSS 76 (296)
T ss_pred cccchHHHHhCCCCC-----CCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccc
Confidence 348899999999998 899999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhcCCChHH----HHHH-HHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcC
Q 023364 83 KQQRQSQQDGKRRKMMSDLEERERAAFAPDPAV----KARQ-EEEKIARQLKEEIERIRAMHENKRTPAAFASVKETKQS 157 (283)
Q Consensus 83 ~~~r~~~~~~~r~~~~~~l~~re~~~~~~~~~~----~~~~-~~~~~~~~l~ee~~r~r~~~~~~~~~~~~~~~~~~~~~ 157 (283)
...+....+..+..+..|+++++..++...... ..+. -.++.....++-.+.+.+...+++....... +
T Consensus 77 ~~~~~d~~~~~r~~f~~dl~~~~~~~~a~~~~~~e~~~e~~~~~~k~~~~~~er~~~l~~~~~~~l~~~~~~~-~----- 150 (296)
T KOG0691|consen 77 AQGREDQADGFRKKFGSDLFERERGALALLKESEESELERERLQEKFRAVQRERVDKLVEILREKLSEVVESV-E----- 150 (296)
T ss_pred chhhhhHHHHHHHHhhhhhhhhHHHHHhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-h-----
Confidence 889999999999999999999999866643321 0000 0000111111111111111111110000000 0
Q ss_pred CCCCCCCcccceEEEEeee--------cCccccHHHHHHHhcccCCeeEEEEec--CCCcce---EEEEecCHHHHHHHH
Q 023364 158 GSGGVGLDKEKVLKVSWEK--------FGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGS---ALVVMATKSAAGAAT 224 (283)
Q Consensus 158 ~~~~~~~~~~~~lkvkWk~--------~~~~~te~~L~~~f~~yG~V~~v~i~~--~k~~g~---A~V~F~~~~~A~~A~ 224 (283)
...-.+ -.++++|.+ .+..|+. .....|+.|+.+..|.... .+.+|- +.+.+.+...+....
T Consensus 151 -~~~~~~---e~~~l~~e~~~~e~~~~~g~~y~~-~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 225 (296)
T KOG0691|consen 151 -ERKLAT---EALQLQRERFGEELLHTIGRTYSR-TKALKPIKFRTSPGVSKLSEGSRAKGGALRAMWNLAAGAVALYGG 225 (296)
T ss_pred -hhhhhH---HHHHHHHhhhhHHHHHhhcccchh-hHhhhccccccccCcchhhhcccccchhHHHHHhhhHHHHHHHHH
Confidence 000000 012222222 4445665 6777888887666665532 233332 234444444455555
Q ss_pred HhhcCCCCCCeEEeecCCCcCCCCCCCCCCCCCCCCCcCCCCChhhHHHHHHHHHh
Q 023364 225 GSVCGNLSNPLLVLPLQPAVATQIPSAPKPVETESINNLVGAGYQAHEDAILEKLR 280 (283)
Q Consensus 225 ~~~~g~~~~pl~v~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~E~~vl~rlr 280 (283)
.+..+...+|+.+.|.+++ ..+.. ....-.+++.+++--|+|+.+++.++
T Consensus 226 ~~e~~~~~~~~~~~~e~~~---~~~~~---~~~~~~~~~~~~s~~dies~l~~~~~ 275 (296)
T KOG0691|consen 226 QDEMEKLLEALGEALEKRA---EYASA---KTGKSLDTLWHGSSFDIESTLIRVCQ 275 (296)
T ss_pred HHHHHhhhcchHHHhhhch---HHHHH---hhcchhhhhhHhHHHHHHHHHHHHHH
Confidence 5677888888778777631 11110 01112234567789999999999887
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.7e-23 Score=193.73 Aligned_cols=75 Identities=32% Similarity=0.622 Sum_probs=70.5
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIKRE 82 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 82 (283)
+...|||+||||+++ ||.+|||+|||+||++||||+||++++|.++|++|++||+||+||++|+.||+++.+...
T Consensus 1 ~~~~dyYeiLGV~k~-----As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 1 MAKRDYYEILGVSKD-----ASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CCccchhhhcCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 467899999999998 899999999999999999999999999999999999999999999999999999876543
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-22 Score=186.33 Aligned_cols=70 Identities=41% Similarity=0.805 Sum_probs=67.7
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||+||||+++ |+..+||+|||+||++|||||||+||.|.+.|+.|+.||+||+||.+|+.||.++.
T Consensus 14 ~~rDfYelLgV~k~-----Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 14 AGRDFYELLGVPKN-----ASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred cCCCHHHHhCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 46899999999998 89999999999999999999999999999999999999999999999999999994
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.8e-19 Score=171.76 Aligned_cols=69 Identities=32% Similarity=0.605 Sum_probs=65.9
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
+.|||+||||+++ ||.++||+|||+||++||||+|++++.|.+.|+.|++||+||+||.+|+.||+++.
T Consensus 2 ~~dyY~vLgv~~~-----As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKH-----SNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 5799999999998 89999999999999999999998788899999999999999999999999999874
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=7.2e-19 Score=168.83 Aligned_cols=71 Identities=37% Similarity=0.620 Sum_probs=66.9
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
+...|||+||||+++ |+.++||+|||+||++||||+|++++.|.+.|++|++||+||+||.+|+.||.++.
T Consensus 6 ~~~~Dyy~~Lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 6 WVEKDFYKELGVSSD-----ASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred hcccCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 446799999999998 89999999999999999999999888899999999999999999999999999874
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.1e-18 Score=166.53 Aligned_cols=68 Identities=35% Similarity=0.608 Sum_probs=64.5
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ |+.++||+|||+||++||||+|+ ++.|.+.|++|++||+||+||.+|+.||+++.
T Consensus 3 ~~dyY~~Lgv~~~-----a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKT-----ASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 5799999999998 89999999999999999999997 57899999999999999999999999999875
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.8e-18 Score=160.85 Aligned_cols=67 Identities=37% Similarity=0.733 Sum_probs=63.4
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.+..||+||||+++ ||.+|||+|||+||++|||||||+ +.+.|++|+.||+||+||++|..||+++.
T Consensus 2 ~~~~~y~il~v~~~-----As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~ 68 (337)
T KOG0712|consen 2 KNTKLYDILGVSPD-----ASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGE 68 (337)
T ss_pred cccccceeeccCCC-----cCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence 46789999999998 899999999999999999999985 78999999999999999999999999984
No 8
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.1e-18 Score=154.60 Aligned_cols=71 Identities=42% Similarity=0.762 Sum_probs=67.2
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKI 79 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 79 (283)
...|+|+||||+++ ++.++|||+||+|+++||||+++++|++...|+.|+.||.||+||.+|..||.++..
T Consensus 29 ~~~~LYdVLgl~k~-----at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKT-----ATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL 99 (279)
T ss_pred chhHHHHHhCCCcc-----cchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence 46789999999998 899999999999999999999999999999999999999999999999999999743
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.4e-18 Score=164.18 Aligned_cols=69 Identities=32% Similarity=0.635 Sum_probs=65.7
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
+.|||+||||+++ |+.++|++|||+||++||||+|++++.|.+.|++|++||+||+||.+|+.||+++.
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKS-----ANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 5799999999998 89999999999999999999998778899999999999999999999999999874
No 10
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=8.9e-18 Score=161.06 Aligned_cols=70 Identities=37% Similarity=0.660 Sum_probs=66.3
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||+||||+++ |+.++|++|||+||++||||+|++++.|.+.|+.|++||+||+||.+|..||.++.
T Consensus 3 ~~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 3 AKKDYYEILGVDRN-----ATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 45799999999998 89999999999999999999999888899999999999999999999999999874
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=9.2e-18 Score=159.84 Aligned_cols=69 Identities=35% Similarity=0.635 Sum_probs=65.6
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ ||.++||+|||+|+++||||+|++++.|.+.|++|++||+||+||.+|..||.++.
T Consensus 2 ~~d~y~iLgv~~~-----a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 2 KRDYYEILGLSKG-----ASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 4799999999998 89999999999999999999999888899999999999999999999999999875
No 12
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=159.41 Aligned_cols=70 Identities=33% Similarity=0.694 Sum_probs=64.9
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD-PDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||+||||+++ ||.++|++|||+||++||||+|+++ +.|.+.|++|++||+||+||.+|+.||.++.
T Consensus 2 ~~~d~y~~lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 2 EKKDYYEILGVSRN-----ATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCCChHHhcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 35799999999998 8999999999999999999999864 6788999999999999999999999999864
No 13
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=158.85 Aligned_cols=70 Identities=34% Similarity=0.652 Sum_probs=66.2
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||+||||+++ |+.++|++|||+||++||||++++++.+.+.|+.|++||+||+||.+|+.||+++.
T Consensus 2 ~~~d~y~~lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 2 VKRDYYEILGVTRD-----ASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred CCCChHHHhCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence 35799999999998 89999999999999999999998778899999999999999999999999999874
No 14
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.70 E-value=1.5e-17 Score=119.66 Aligned_cols=63 Identities=38% Similarity=0.790 Sum_probs=59.5
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHhccCchhhhHHH
Q 023364 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFD 74 (283)
Q Consensus 7 d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD 74 (283)
|||+||||+++ ++.++|+++|+++++.||||+++++. .+.+.|..|+.||++|+||..|+.||
T Consensus 1 ~~y~iLgl~~~-----~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPD-----ASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTT-----SSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCC-----CCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 69999999998 89999999999999999999987655 58899999999999999999999998
No 15
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.4e-17 Score=159.06 Aligned_cols=69 Identities=39% Similarity=0.740 Sum_probs=65.6
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ ||.++|++|||+||++||||++++++.|.+.|+.|++||+||+||.+|+.||.++.
T Consensus 3 ~~~~y~~Lgv~~~-----a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRD-----ASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCC-----CCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 5799999999998 89999999999999999999998878899999999999999999999999999874
No 16
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6.2e-18 Score=160.73 Aligned_cols=72 Identities=35% Similarity=0.700 Sum_probs=65.4
Q ss_pred CCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 2 DVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD---PDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 2 ~~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
++++.|||.+|+|+++ ||.++|++|||++|+.|||||..+. ..|.+.|+.|..||+||+||.+|+.||.++.
T Consensus 5 e~~e~e~Ya~LNlpkd-----At~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKD-----ATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred ccchhhHHHHhCCCcc-----cCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 4567899999999998 8999999999999999999998632 2488999999999999999999999999984
No 17
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.5e-17 Score=159.15 Aligned_cols=69 Identities=32% Similarity=0.657 Sum_probs=65.6
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ |+.++|++|||+||++||||+|++++.|.+.|+.|++||++|+||.+|+.||+++.
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 3 SKDYYEVLGLEKG-----ASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CCChHHhhCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 4799999999998 89999999999999999999998878899999999999999999999999999864
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2e-17 Score=158.79 Aligned_cols=66 Identities=44% Similarity=0.763 Sum_probs=63.4
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDD 75 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~ 75 (283)
..|||+||||+++ |+.++|++|||+||++||||++++++.|.+.|+.|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKD-----ATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 5699999999998 89999999999999999999998778899999999999999999999999998
No 19
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2e-17 Score=157.79 Aligned_cols=68 Identities=34% Similarity=0.605 Sum_probs=64.1
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ |+.++|++|||+||++||||+|+ ++.+.+.|+.|++||++|+||.+|+.||+++.
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRN-----ASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 4799999999998 89999999999999999999997 57888999999999999999999999999874
No 20
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.1e-17 Score=158.15 Aligned_cols=69 Identities=32% Similarity=0.602 Sum_probs=65.2
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.+.|||+||||+++ |+.++|++|||+||++||||+|+ ++.|.+.|+.|++||++|+||.+|+.||+++.
T Consensus 3 ~~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 3 EKRDYYEVLGVDRN-----ADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred CcCChHHhhCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 47899999999998 89999999999999999999998 47899999999999999999999999999874
No 21
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.1e-17 Score=158.23 Aligned_cols=68 Identities=28% Similarity=0.566 Sum_probs=64.3
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
+.|||+||||+++ ||.++|++|||+||++||||+|+ ++.|.+.|+.|++||++|+||.+|+.||.++.
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKD-----ASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 5799999999998 89999999999999999999998 57789999999999999999999999999874
No 22
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.2e-17 Score=156.85 Aligned_cols=71 Identities=35% Similarity=0.620 Sum_probs=65.1
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD-PDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.+...||+||||..+ ++..+|+++||+|||+|||||||+. .+|.+.|+.|+.||+|||||..|++||....
T Consensus 5 ~~~~c~YE~L~v~~~-----a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERD-----ADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhhHHHHHhccccc-----CCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 346789999999998 8999999999999999999999865 3699999999999999999999999998765
No 23
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.69 E-value=2.1e-17 Score=159.82 Aligned_cols=66 Identities=38% Similarity=0.657 Sum_probs=61.2
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||+||||+++ ||.++||+|||+||++||||+|+ + .+.|++|++||+||+||.+|+.||.++.
T Consensus 26 ~~~d~Y~vLGV~~~-----As~~eIKkAYrkla~k~HPDk~~-~---~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 26 DNEKLYEVLNLSKD-----CTTSEIKKAYRKLAIKHHPDKGG-D---PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred cchhHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCc-h---HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 35799999999998 89999999999999999999986 2 4899999999999999999999999875
No 24
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3e-17 Score=151.91 Aligned_cols=68 Identities=32% Similarity=0.639 Sum_probs=64.4
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ ||.++||+|||+||++||||+|+ ++.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 3 ~~d~y~vLgv~~~-----a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKN-----ASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 5799999999998 89999999999999999999997 67889999999999999999999999999874
No 25
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.7e-17 Score=157.97 Aligned_cols=68 Identities=37% Similarity=0.693 Sum_probs=64.9
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.|||+||||+++ ||.++||+|||+||++||||+|++++.|.+.|+.|++||++|+||.+|+.||+++.
T Consensus 1 ~d~y~iLgv~~~-----a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKT-----ASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 489999999998 89999999999999999999999888899999999999999999999999999875
No 26
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.4e-17 Score=156.33 Aligned_cols=70 Identities=37% Similarity=0.702 Sum_probs=65.9
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||+||||+++ |+.++|++|||+||++||||+|++++.|.+.|+.|++||++|+||.+|..||.+..
T Consensus 2 ~~~d~y~iLgv~~~-----as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 2 AKRDYYEVLGVSRN-----ASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCCChHHhcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 35799999999998 89999999999999999999998778899999999999999999999999999864
No 27
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3e-17 Score=157.03 Aligned_cols=68 Identities=35% Similarity=0.623 Sum_probs=64.1
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ |+.++|++|||+||++||||+|+ ++.|.+.|+.|++||+||+||.+|..||.++.
T Consensus 2 ~~d~y~iLgv~~~-----a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 2 ARDYYGLLGVSRN-----ASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCCcceecCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 3699999999998 89999999999999999999998 67889999999999999999999999999764
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3e-17 Score=157.19 Aligned_cols=68 Identities=35% Similarity=0.696 Sum_probs=64.2
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ |+.++|++|||+||++||||+|+ ++.+.+.|+.|++||++|+||.+|+.||.++.
T Consensus 2 ~~d~Y~~Lgv~~~-----a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRN-----ATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 4799999999998 89999999999999999999998 47889999999999999999999999999875
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.9e-17 Score=157.16 Aligned_cols=69 Identities=36% Similarity=0.717 Sum_probs=65.4
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ |+.++|++|||+||++||||++++++.|.+.|+.|++||++|+||.+|+.||.++.
T Consensus 2 ~~d~y~iLgv~~~-----a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 2 KRDYYEVLGVSRS-----ADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CCChhhhcCCCCC-----CCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 4799999999998 89999999999999999999998778889999999999999999999999999875
No 30
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.7e-17 Score=156.32 Aligned_cols=68 Identities=34% Similarity=0.673 Sum_probs=64.0
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ |+.++|++|||+||++||||+|+ ++.+.+.|+.|++||++|+||.+|+.||+++.
T Consensus 4 ~~d~y~iLgv~~~-----a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 4 TRDYYEILGLSKD-----ASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCHHHhhCCCCC-----CCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 4699999999998 89999999999999999999997 57788999999999999999999999999874
No 31
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=5.4e-17 Score=155.18 Aligned_cols=68 Identities=31% Similarity=0.606 Sum_probs=64.1
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ |+.++|++|||+||++||||+|+ ++.|.+.|++|++||+||+||.+|+.||.++.
T Consensus 3 ~~~~y~iLgv~~~-----a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 3 KRDYYEVLGVSKS-----ASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CCChHHhhCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 4799999999998 89999999999999999999998 57789999999999999999999999999874
No 32
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=9.3e-17 Score=154.03 Aligned_cols=70 Identities=37% Similarity=0.681 Sum_probs=66.4
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||+||||+++ |+.++|++|||+||++||||+|++++.+.+.|+.|++||++|+||.+|+.||.+..
T Consensus 3 ~~~~~y~~Lgv~~~-----a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 3 EKRDYYEVLGVSKT-----ATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred ccCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 46899999999998 89999999999999999999999888899999999999999999999999999874
No 33
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2e-16 Score=150.72 Aligned_cols=68 Identities=29% Similarity=0.627 Sum_probs=64.1
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.|||+||||+++ |+..+|++|||+|+++||||++++++ .|.+.|+.|++||++|+|+.+|..||.++.
T Consensus 3 ~d~y~vLgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGVDRN-----ASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 699999999998 89999999999999999999998765 788999999999999999999999999764
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.6e-16 Score=143.64 Aligned_cols=70 Identities=34% Similarity=0.536 Sum_probs=65.4
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIK 80 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 80 (283)
..|||+||||+++ |+..|||+||++||++||||.|. ++.+.+.|++|.+||+||+|+.+|..||..+...
T Consensus 42 ~~d~Y~vLgv~~~-----At~~EIK~Af~~LaKkyHPD~n~-~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRN-----ATLSEIKSAFRKLAKKYHPDVNK-DKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCC-----CCHHHHHHHHHHHHHhhCCCCCC-CcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3499999999998 89999999999999999999998 4589999999999999999999999999998754
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.62 E-value=3.4e-16 Score=148.49 Aligned_cols=66 Identities=35% Similarity=0.683 Sum_probs=62.6
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 7 d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
|||+||||+++ |+.++|++|||++|++||||+++ ++.+.+.|+.|++||++|+|+.+|..||.+..
T Consensus 1 d~y~~Lgv~~~-----a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKD-----ASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 79999999998 89999999999999999999997 67788999999999999999999999999864
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.9e-16 Score=149.07 Aligned_cols=67 Identities=31% Similarity=0.607 Sum_probs=63.3
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.|||+||||+++ ||.++|++|||+++++||||+++ ++.+.+.|+.|++||++|+|+.+|+.||.++.
T Consensus 3 ~~~y~iLgv~~~-----as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKT-----ASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 699999999998 89999999999999999999997 56788999999999999999999999999864
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.62 E-value=5.3e-16 Score=144.53 Aligned_cols=67 Identities=33% Similarity=0.577 Sum_probs=63.1
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
..|||+||||+++ ++.++|++|||+||++||||+++ ++.+.+.|+.|++||++|+||.+|+.||.++
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKPT-----DDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 3699999999998 89999999999999999999987 5678999999999999999999999999976
No 38
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.62 E-value=4.6e-16 Score=159.23 Aligned_cols=71 Identities=27% Similarity=0.434 Sum_probs=65.8
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKI 79 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 79 (283)
+.+.+||+||||+++ ||..+||+|||+||++||||++|++ .|...|+.|++||+||+||.+|+.||.++..
T Consensus 570 ~~d~dYYdILGVs~d-----AS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 570 IPDTLFYDILGVGVN-----ADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCCChHHHcCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 456899999999998 8999999999999999999999864 6888999999999999999999999998754
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=6.3e-16 Score=147.74 Aligned_cols=68 Identities=31% Similarity=0.643 Sum_probs=63.9
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ ++.++|++|||+|+++||||+++ ++.+.+.|+.|++||++|+||.+|+.||.++.
T Consensus 2 ~~d~y~vLgv~~~-----a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 2 AADYYEILGVSRD-----ADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CCChhhhcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 4699999999998 89999999999999999999997 57788999999999999999999999999864
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=6e-16 Score=147.71 Aligned_cols=67 Identities=30% Similarity=0.600 Sum_probs=63.4
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.|||+||||+++ |+.++|++|||+|+++||||+++ ++.+.+.|+.|++||++|+||.+|+.||.++.
T Consensus 2 ~d~y~~Lgv~~~-----a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 2 MDYYELLGVSRT-----ASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred CChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 489999999998 89999999999999999999997 67889999999999999999999999999864
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.61 E-value=1.3e-15 Score=107.93 Aligned_cols=58 Identities=40% Similarity=0.774 Sum_probs=53.9
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChhHHHHHHHHHHHHHhccCch
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPD-DPDAHDNFQKLKSSYEILKDEK 68 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~-~~~a~~~f~~i~~Ay~vL~d~~ 68 (283)
.|||+||||+++ ++.++|+++|+++++.||||++++ .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~-----~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRD-----ASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999997 899999999999999999999976 5678899999999999999985
No 42
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.4e-16 Score=136.32 Aligned_cols=72 Identities=44% Similarity=0.721 Sum_probs=65.1
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChhHHHHHHHHHHHHHhccCchhhhHHHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRP--DDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIK 80 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~--~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 80 (283)
...|+|+||||.++ |++.+|++||++|++.||||+++ +..++.+.|+.|+.||.||+|..+|+.||..+...
T Consensus 12 ~~~d~YevLGVer~-----a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERD-----ATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhccc-----CCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 45699999999998 89999999999999999999994 34578999999999999999999999999987533
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.59 E-value=2.8e-15 Score=104.22 Aligned_cols=55 Identities=47% Similarity=0.950 Sum_probs=51.3
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccC
Q 023364 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKD 66 (283)
Q Consensus 7 d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d 66 (283)
|||+||||+++ ++.++|+++|+++++.||||++++.+.+.+.|..|+.||++|+|
T Consensus 1 ~~y~vLgl~~~-----~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPD-----ASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999987 89999999999999999999997546788999999999999987
No 44
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.56 E-value=1.9e-14 Score=123.54 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=73.1
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHhccCchhhhHHHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLKIK 80 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 80 (283)
.|||+||||++.+ +++..+|+++||+++++||||+.++.+. +...|..|++||++|+||..|+.|+..+...
T Consensus 1 ~~yf~llgl~~~~---~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~ 77 (171)
T PRK05014 1 MDYFTLFGLPARY---DIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF 77 (171)
T ss_pred CCHHHHCCCCCCC---CCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence 4899999999974 4789999999999999999999875542 5678999999999999999999999776533
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 023364 81 REKQQRQSQQDGKRRKMMSDLEERER 106 (283)
Q Consensus 81 ~~~~~r~~~~~~~r~~~~~~l~~re~ 106 (283)
...... .....-.-+++.|+.||.
T Consensus 78 ~~~~~~--~~~~d~efLme~me~rE~ 101 (171)
T PRK05014 78 DLAHEQ--HTVRDTAFLMEQMELREE 101 (171)
T ss_pred cccccc--CCcCCHHHHHHHHHHHHH
Confidence 211110 011123466777888875
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.5e-15 Score=127.97 Aligned_cols=72 Identities=40% Similarity=0.746 Sum_probs=66.8
Q ss_pred CCCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-HHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 1 MDVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-AHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 1 ~~~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~-a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
|.....|||+||||+++ ++..+|+++||+++++||||++++++. +.+.|..|++||++|+|+..|..||..+
T Consensus 1 ~~~~~~~~y~iLgv~~~-----as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 1 MMSDLLDYYEILGVPPN-----ASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred CchhhhhHHHHhCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 34567899999999987 899999999999999999999998885 9999999999999999999999999864
No 46
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.4e-14 Score=126.30 Aligned_cols=69 Identities=35% Similarity=0.685 Sum_probs=63.3
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.-|+|+||||+++ +++.|||+|||+|+++|||||+|+..+..+.|..|.+||..|+|+..|..|..++.
T Consensus 98 ~fDPyEILGl~pg-----as~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 98 KFDPYEILGLDPG-----ASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred cCCcHHhhCCCCC-----CCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 4699999999998 89999999999999999999998545667789999999999999999999999874
No 47
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.51 E-value=1.4e-13 Score=118.65 Aligned_cols=100 Identities=23% Similarity=0.301 Sum_probs=75.0
Q ss_pred CCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhH-----HHHHHHHHHHHHhccCchhhhHHHHH
Q 023364 2 DVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDA-----HDNFQKLKSSYEILKDEKARKLFDDL 76 (283)
Q Consensus 2 ~~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a-----~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (283)
-....|||+||||++.+ .++..+|+++||+++++||||++++.+.+ .+.+..|+.||.+|+||.+|+.|...
T Consensus 2 ~~~~~dyf~llglp~~f---~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 2 VSLKDDHFSLFGLPARF---ALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCCCCHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 34568999999999974 47999999999999999999998765543 34468999999999999999999987
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 023364 77 LKIKREKQQRQSQQDGKRRKMMSDLEERER 106 (283)
Q Consensus 77 ~~~~~~~~~r~~~~~~~r~~~~~~l~~re~ 106 (283)
+.......+ ........-+++-|+.||.
T Consensus 79 l~G~~~~~e--~~~~~d~~fLme~mE~rE~ 106 (176)
T PRK03578 79 LRGVDVQAE--NNTAMPPAFLMQQMEWREA 106 (176)
T ss_pred hcCCCCccc--cCCCCCHHHHHHHHHHHHH
Confidence 653221111 0111234456777888775
No 48
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.50 E-value=1.9e-13 Score=117.39 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=77.0
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||++|||++.+ .++..+|+++||+++++||||++++.+. +...|..|+.||.+|+||.+|+.|+..+.
T Consensus 2 ~~~~~F~l~~l~~~f---~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSF---RLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 578999999999985 5889999999999999999999876553 56789999999999999999999998775
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 023364 79 IKREKQQRQSQQDGKRRKMMSDLEERER 106 (283)
Q Consensus 79 ~~~~~~~r~~~~~~~r~~~~~~l~~re~ 106 (283)
...... ......-.-+++.|+.||.
T Consensus 79 g~~~~~---~~~~~d~~fLme~me~rE~ 103 (173)
T PRK00294 79 GHEVPL---EVTVHDPEFLLQQMQLREE 103 (173)
T ss_pred CCCCCc---ccCCCCHHHHHHHHHHHHH
Confidence 322111 1111234567788888886
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.50 E-value=1.6e-13 Score=117.15 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=70.9
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHhccCchhhhHHHHHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD---AHDNFQKLKSSYEILKDEKARKLFDDLLKIKRE 82 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~---a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 82 (283)
.|||+||||++.+ .++..+|+++||+++++||||++++... +...|..|++||++|+||.+|+.|+..+.....
T Consensus 2 ~~yf~llgl~~~f---~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~~ 78 (166)
T PRK01356 2 QNYFQLLGLPQEY---NIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINL 78 (166)
T ss_pred CCHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCCC
Confidence 5899999999974 4899999999999999999999864322 334688999999999999999999887742211
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH
Q 023364 83 KQQRQSQQDGKRRKMMSDLEERER 106 (283)
Q Consensus 83 ~~~r~~~~~~~r~~~~~~l~~re~ 106 (283)
..+-. .....-.-+++.++.||.
T Consensus 79 ~~~~~-~~~~d~~fLme~me~rE~ 101 (166)
T PRK01356 79 NDEKT-RSLLSPLELSIFWDEMER 101 (166)
T ss_pred CCccc-cccCCHHHHHHHHHHHHH
Confidence 10000 001123356677887775
No 50
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.47 E-value=6.4e-14 Score=140.84 Aligned_cols=68 Identities=32% Similarity=0.528 Sum_probs=63.6
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKI 79 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 79 (283)
.|||+||||+++ |+..+|+++||+|+++||||++++ +.+...|+.|+.||++|+||.+|+.||.++..
T Consensus 2 ~DYYeVLGVs~d-----AS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGIDRD-----ADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 599999999998 899999999999999999999974 77888999999999999999999999998753
No 51
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.1e-12 Score=110.39 Aligned_cols=70 Identities=31% Similarity=0.592 Sum_probs=62.5
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD-PDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
-+.|+|+||.|.++ .+.++|++.||+|++..||||||++ +-|...|..+..||.+|-|+..|..-+....
T Consensus 51 fnLNpfeVLqIdpe-----v~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y~ 121 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPE-----VTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVYT 121 (250)
T ss_pred cccChHHHHhcCCC-----CCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 46899999999998 8999999999999999999999998 6799999999999999999997776554433
No 52
>PHA03102 Small T antigen; Reviewed
Probab=99.41 E-value=1.2e-13 Score=116.01 Aligned_cols=64 Identities=28% Similarity=0.393 Sum_probs=58.4
Q ss_pred CcccccccccCCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKL--TEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a--~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..+|+||||+++ | |..+||+|||++++++||||+++ .+.|+.|++||++|+|+..|..||.++.
T Consensus 5 ~~l~~vLGl~~~-----A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 5 KELMDLLGLPRS-----AWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHcCCCCC-----CCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 357999999998 8 99999999999999999999753 4799999999999999999999999873
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.4e-13 Score=125.61 Aligned_cols=69 Identities=39% Similarity=0.677 Sum_probs=65.3
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
+..|+|.+|||+.+ ++.++||+.||++|...|||||- .|.|.+.|+.|+.||++|+|+.+|..||..+.
T Consensus 233 ~~~daYsvlGl~~d-----~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ 301 (490)
T KOG0720|consen 233 NILDAYSALGLPSD-----CSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELK 301 (490)
T ss_pred cCCCchhhcCCCCC-----CCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 36799999999987 99999999999999999999997 89999999999999999999999999999774
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.1e-12 Score=117.02 Aligned_cols=72 Identities=38% Similarity=0.613 Sum_probs=65.3
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIKRE 82 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 82 (283)
..|+|+||||.++ ++..+|.+|||+||++||||+++ ++++...|..|..||++|.|...|..||-.+....+
T Consensus 32 ~enCYdVLgV~Re-----a~KseIakAYRqLARrhHPDr~r-~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd~ 103 (329)
T KOG0722|consen 32 AENCYDVLGVARE-----ANKSEIAKAYRQLARRHHPDRNR-DPESKKLFVKIATAYEILKDNETRTQYDYALDHPDE 103 (329)
T ss_pred chhHHHHhhhhhh-----ccHHHHHHHHHHHHHHhCCcccC-CchhhhhhhhhhcccccccchhhHHhHHHHhcCchH
Confidence 4689999999998 79999999999999999999998 566779999999999999999999999988765443
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=3e-12 Score=119.04 Aligned_cols=68 Identities=32% Similarity=0.575 Sum_probs=62.0
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHhccCchhhhHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP---DAHDNFQKLKSSYEILKDEKARKLFDDL 76 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~---~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (283)
...|||.||||.++ |+..+|-+|||++|.+||||-..+.. .|...|.-|..|-+||+||++|+.||..
T Consensus 392 ~kRDYYKILGVkRn-----AsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 392 GKRDYYKILGVKRN-----ASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred ccchHHHHhhhccc-----ccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 35799999999998 89999999999999999999887543 4888999999999999999999999975
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.8e-11 Score=110.87 Aligned_cols=69 Identities=38% Similarity=0.692 Sum_probs=61.5
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD-PDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||.||||.++ ++..+|++||+++++.||||+++.. ..+...|.+|.+||++|+|+.+|..||.+..
T Consensus 2 ~~d~~~~l~i~~~-----as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARS-----ASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCcccc-----ccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 5799999999987 7777999999999999999998855 1355589999999999999999999999985
No 57
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.15 E-value=4.2e-10 Score=96.73 Aligned_cols=96 Identities=21% Similarity=0.263 Sum_probs=73.4
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHhccCchhhhHHHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLKIK 80 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 80 (283)
.|||++|||++.+ ..+...+++.|+.+.+.+|||+..+.+. +.+....||+||.+|+||.+|+.|=..+...
T Consensus 2 ~nyF~lf~lp~~F---~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g 78 (173)
T PRK01773 2 NNPFALFDLPVDF---QLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTG 78 (173)
T ss_pred CChHHhcCCCCCC---CCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccC
Confidence 5899999999985 6999999999999999999999865542 4556789999999999999999998877621
Q ss_pred HH-HHHHHhhhhhHHHHHHHHHHHHHH
Q 023364 81 RE-KQQRQSQQDGKRRKMMSDLEERER 106 (283)
Q Consensus 81 ~~-~~~r~~~~~~~r~~~~~~l~~re~ 106 (283)
.. ..+ ......-.-+++-++.||.
T Consensus 79 ~~~~~e--~~~~~d~~fLme~ME~rE~ 103 (173)
T PRK01773 79 EQQNLE--EKSTQDMAFLMQQMEWREQ 103 (173)
T ss_pred CCCCcc--cccCCCHHHHHHHHHHHHH
Confidence 11 001 1112233567777888885
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.2e-11 Score=114.26 Aligned_cols=68 Identities=35% Similarity=0.587 Sum_probs=63.6
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD-PDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
-.|||.||||..+ ++..+|+++||++++.||||++.++ .++...|..+-+||.||+||.+|..||...
T Consensus 372 Rkd~ykilGi~~~-----as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 372 RKDWYKILGISRN-----ASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhHHHHhhhhhh-----cccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 4799999999998 8999999999999999999999887 678899999999999999999999999754
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.11 E-value=6.2e-11 Score=108.56 Aligned_cols=56 Identities=34% Similarity=0.543 Sum_probs=50.1
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hhHHHHHHHHHHHHHhccC
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPD--D-----PDAHDNFQKLKSSYEILKD 66 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~--~-----~~a~~~f~~i~~Ay~vL~d 66 (283)
.|+|+||||+++ +|.++||++||+|+++||||++.+ . +.+.+.|+.|+.||++|+.
T Consensus 200 ~~ay~vLgv~~~-----as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSES-----DDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCC-----CCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 589999999998 899999999999999999999643 2 2478999999999999975
No 60
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.09 E-value=8.8e-11 Score=94.15 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=46.4
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhcc
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILK 65 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~ 65 (283)
..++|+||||+++ +|.++|+++||++++++|||+. ++ ...|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~-----As~~eIkkaYRrLa~~~HPDkg-Gs---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPT-----ASKERIREAHKQLMLRNHPDNG-GS---TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCC-----CCHHHHHHHHHHHHHHhCCCCC-CC---HHHHHHHHHHHHHHh
Confidence 3589999999998 8999999999999999999985 33 468999999999985
No 61
>PHA02624 large T antigen; Provisional
Probab=98.99 E-value=3.7e-10 Score=112.63 Aligned_cols=59 Identities=31% Similarity=0.436 Sum_probs=54.6
Q ss_pred CcccccccccCCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHH
Q 023364 6 VDHYRVLGLPSGEEGAKL--TEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLF 73 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a--~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Y 73 (283)
.++|+||||+++ + +..+||+|||++|++||||++. + .+.|+.|+.||++|+|+.++..|
T Consensus 11 ~elyelLGL~~~-----A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMA-----AWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCC-----CCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 579999999998 8 9999999999999999999963 3 57999999999999999999988
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.98 E-value=5.2e-09 Score=88.72 Aligned_cols=83 Identities=25% Similarity=0.266 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCh-----hHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Q 023364 22 KLTEKEISKAYKWKALELHPDKRPDDP-----DAHDNFQKLKSSYEILKDEKARKLFDDLLKIKREKQQRQSQQDGKRRK 96 (283)
Q Consensus 22 ~a~~~eIkkaYr~la~~~HPDk~~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~r~~~~~~~r~~ 96 (283)
..+..+|+++||+++++||||+.++.+ .+...|..|++||++|+||.+|+.|+..+........... ...-.-
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~~~~e~~~--~~d~~f 79 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGIDLASEQHS--VRDTAF 79 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCcccCC--CCCHHH
Confidence 368899999999999999999975433 2667899999999999999999999998863321111101 112235
Q ss_pred HHHHHHHHHH
Q 023364 97 MMSDLEERER 106 (283)
Q Consensus 97 ~~~~l~~re~ 106 (283)
+++-|+.||.
T Consensus 80 Lme~Me~rE~ 89 (157)
T TIGR00714 80 LMEQLELREE 89 (157)
T ss_pred HHHHHHHHHH
Confidence 5666666664
No 63
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.93 E-value=2.6e-09 Score=74.34 Aligned_cols=54 Identities=31% Similarity=0.372 Sum_probs=44.4
Q ss_pred HHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeec
Q 023364 186 LREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (283)
Q Consensus 186 L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~ 240 (283)
|.++|++||+|..|.+... ++|+|||+|.+.++|..|+... .-+.+++|.|.|.
T Consensus 1 L~~~f~~fG~V~~i~~~~~-~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK-KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT-STTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6899999999999999533 3699999999999999999864 4455889999873
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.8e-09 Score=94.67 Aligned_cols=74 Identities=27% Similarity=0.384 Sum_probs=64.3
Q ss_pred cceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeec
Q 023364 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (283)
Q Consensus 167 ~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~ 240 (283)
+++|+| ...+.+.++++|++||.+||.|..|.|. ++..+|||||.|.+.++|..||.. ++|+....|.|+|.
T Consensus 189 ~~tvRv--tNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 189 EATVRV--TNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred cceeEE--ecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 345555 6777789999999999999999999983 267899999999999999999975 67888999999999
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
.|
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 87
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.5e-10 Score=99.75 Aligned_cols=73 Identities=32% Similarity=0.442 Sum_probs=63.7
Q ss_pred CCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCChhHHHHHHHHHHHHHhccCchhhhHHHHH
Q 023364 2 DVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKR--PDDPDAHDNFQKLKSSYEILKDEKARKLFDDL 76 (283)
Q Consensus 2 ~~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~--~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (283)
+|...|+|.+|||+.-. ..++..+|.++.++.+.+||||+. .++.+..+.|.+|+.||+||+|+..|..||..
T Consensus 39 ~Wk~~DlYa~lgLskyR--~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 39 NWKKVDLYALLGLSKYR--TKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhHHHHhchHhhh--cCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 57889999999998742 268999999999999999999996 33456788999999999999999999999974
No 66
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.90 E-value=9e-10 Score=105.17 Aligned_cols=68 Identities=26% Similarity=0.597 Sum_probs=61.0
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----hhHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD-----PDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~-----~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
.-|+|+||||+.+ ++..+||++||+|+.++||||.+.- .+-.+.+..|++||..|+|...|..|-.++
T Consensus 97 ~fDPyEILGI~~~-----ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 97 GFDPYEILGIDQD-----TSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred CCChHHhhcccCC-----CcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 4699999999998 8999999999999999999998741 246788999999999999999999998873
No 67
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.81 E-value=2.1e-08 Score=83.74 Aligned_cols=71 Identities=21% Similarity=0.249 Sum_probs=59.3
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
|--......+|+++|+++|++||.|.+|.|.. ++.+|||||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 37 lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 33356667799999999999999999998852 567999999999999999999764 445688999999754
No 68
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=3.9e-08 Score=77.07 Aligned_cols=68 Identities=25% Similarity=0.416 Sum_probs=57.7
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec-CCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~~~ 242 (283)
......+|.+...+||++||+|..|.|.+ ...+|+|||+|+++.+|.+|+.++.|+- +.+|.|.+-++
T Consensus 24 rNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 24 RNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred ecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34566799999999999999999999964 5579999999999999999999976665 66777777654
No 69
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.69 E-value=5.8e-08 Score=91.13 Aligned_cols=70 Identities=26% Similarity=0.250 Sum_probs=59.2
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQ 241 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~ 241 (283)
|-.......+++++|.++|++||.|..|.|+ ++..+|||||+|.+.++|..|+..+.| +.+.+|.|.|..
T Consensus 272 lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 272 IFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 4445666679999999999999999999985 356899999999999999999986544 459999999975
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.66 E-value=3.4e-07 Score=83.05 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=57.7
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec-CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~~~~ 241 (283)
.......|+++|+++|+.||.|.+|.|+. +.++|+|||+|.+.++|..|+. ++..+.+.+|.|.+..
T Consensus 10 gNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 10 SNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 56666799999999999999999999964 4468999999999999999996 3466679999999965
No 71
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.60 E-value=1.8e-07 Score=66.70 Aligned_cols=53 Identities=36% Similarity=0.568 Sum_probs=46.5
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG 229 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g 229 (283)
.+.++|+++|+++|+.||.|..+.+.. +..+|+|||+|.+.++|..|+....|
T Consensus 6 lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 6 LPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp ETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC
Confidence 456799999999999999999988842 56799999999999999999987554
No 72
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=5e-08 Score=92.75 Aligned_cols=68 Identities=35% Similarity=0.490 Sum_probs=59.2
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCCC-----CCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGNL-----SNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g~~-----~~pl~v~~~~~ 242 (283)
...+...||.++++||++||.|++|.|+. +.++|||||.|.+.+-|..||+...|.. +.||.|.|..+
T Consensus 130 g~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADt 205 (510)
T KOG0144|consen 130 GMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADT 205 (510)
T ss_pred hhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEeccc
Confidence 34566789999999999999999999952 6689999999999999999999866655 78999999875
No 73
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.53 E-value=2.5e-07 Score=86.90 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=58.0
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
+.....+|+++|+++|+.||+|.+|.|.. ++++|||||+|.+.++|..|+.. ...+.+.+|.|.|..|
T Consensus 9 ~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 9 NYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred eCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 55667799999999999999999998842 55789999999999999999975 4555688999998765
No 74
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=3.2e-07 Score=81.33 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=46.8
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
||--.........+.|++.|.+||.|+..+|++ ++++||+||+|.+.++|..|+.+
T Consensus 14 KifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 14 KIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred EEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC
Confidence 444344444577899999999999999977764 67899999999999999999986
No 75
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.47 E-value=5.8e-07 Score=85.38 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=57.6
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+.||+|..|.|. +.+++|||||+|.+.++|..|+.. ...+...+|.|.|..+
T Consensus 113 gnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 113 NYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 5566679999999999999999999884 255789999999999999999975 4455688999998765
No 76
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.46 E-value=6.6e-07 Score=84.96 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=58.0
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCCC----CCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGNL----SNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~~----~~pl~v~~~~~ 242 (283)
|-.......+|+++|+++|++||.|..|.|+. ++.+|+|||+|.+.++|+.||..+.+.. ..||.|.|...
T Consensus 196 lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 196 LYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred eEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 33355666799999999999999999988852 4568999999999999999998765542 47999998654
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=4.2e-07 Score=77.41 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=58.6
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeecC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQ 241 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~~ 241 (283)
||-....+...++.+|..+|+.||+|-+|+| .....|||||||++..+|+.|+..+.|.. +.-+.|+...
T Consensus 12 kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWv-ArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 12 KVYVGNLGSRATKRELERAFSKYGPLRSVWV-ARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred eEEeccCCCCcchHHHHHHHHhcCcceeEEE-eecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3333445667899999999999999999999 44789999999999999999999987777 6668888754
No 78
>smart00360 RRM RNA recognition motif.
Probab=98.44 E-value=8.6e-07 Score=61.84 Aligned_cols=59 Identities=41% Similarity=0.576 Sum_probs=46.7
Q ss_pred ccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEE
Q 023364 179 EDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLV 237 (283)
Q Consensus 179 ~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~pl~v 237 (283)
..+++++|+++|+.||.|..|.+.. ...+|+|||+|.+.++|..|+....+. .+.++.|
T Consensus 6 ~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 6 PDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred cccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 4589999999999999999998853 345899999999999999999764332 2444443
No 79
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=5e-07 Score=74.04 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=55.9
Q ss_pred cCccccHHHHHHHhcccCCeeEEEE-ec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEee--cCC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVI-KS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLP--LQP 242 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i-~~---~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~--~~~ 242 (283)
...-.+++++.+.|..||+|.++.+ ++ +=-+|||+|+|++.+.|+.|+.. ...+.+.++.|.| +.+
T Consensus 80 vHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 80 VHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred cCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 4455899999999999999999998 23 33599999999999999999976 4567799999999 554
No 80
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.41 E-value=1.1e-06 Score=78.74 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=57.4
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~~~~ 241 (283)
.......|+++|+++|+.||+|.+|.|+ ++..+|+|||+|.+.++|..|+. ++.-+.+.|+.|.+..
T Consensus 11 ~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 11 TNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred ecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 5556679999999999999999999996 45567999999999999999995 4667778999998854
No 81
>smart00361 RRM_1 RNA recognition motif.
Probab=98.39 E-value=7.1e-07 Score=65.13 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=40.5
Q ss_pred HHHHHHHhc----ccCCeeEEE--Eec-----CCCcceEEEEecCHHHHHHHHHhhcCCC
Q 023364 183 AERLREIFS----EFGKVEDVV--IKS-----SKKKGSALVVMATKSAAGAATGSVCGNL 231 (283)
Q Consensus 183 e~~L~~~f~----~yG~V~~v~--i~~-----~k~~g~A~V~F~~~~~A~~A~~~~~g~~ 231 (283)
+++|+++|+ +||.|..|. +.+ +.++|+|||+|.+.++|..|+..+.|..
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~ 61 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY 61 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 567888888 999999984 322 4579999999999999999999866653
No 82
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=6e-07 Score=82.97 Aligned_cols=77 Identities=29% Similarity=0.375 Sum_probs=59.5
Q ss_pred CCcccceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEe
Q 023364 163 GLDKEKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVL 238 (283)
Q Consensus 163 ~~~~~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~ 238 (283)
.++..++|-| +.....|-+-+|+.+|.+||.|.+|.|+ .+.+|||+||+|++.++|+.|-..+.|.. +..+.|-
T Consensus 92 s~~~pkRLhV--SNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHV--SNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEe--ecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 3344567776 4555568889999999999999999997 47789999999999999999987765554 4455554
Q ss_pred ecC
Q 023364 239 PLQ 241 (283)
Q Consensus 239 ~~~ 241 (283)
-..
T Consensus 170 ~AT 172 (376)
T KOG0125|consen 170 NAT 172 (376)
T ss_pred ccc
Confidence 443
No 83
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.39 E-value=1.3e-06 Score=86.41 Aligned_cols=74 Identities=27% Similarity=0.260 Sum_probs=57.8
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC----CCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL----SNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~----~~pl~v~~~~~ 242 (283)
.++|--......+|++.|.++|+.||.|..|.|...+..|+|||+|.+.++|..|+..+.|.. .++|.|.|..+
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 344443445557999999999999999999988544445899999999999999998755543 35888888654
No 84
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.38 E-value=2.4e-06 Score=86.26 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=55.0
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEee
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLP 239 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~ 239 (283)
......+++++|+++|+.||+|.+|.|. +++++|||||+|.+.++|..|+....| +.+.+|.|.+
T Consensus 113 GnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 113 GSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 4566679999999999999999999884 267899999999999999999986544 3477888875
No 85
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.36 E-value=1.1e-06 Score=77.61 Aligned_cols=68 Identities=28% Similarity=0.476 Sum_probs=57.5
Q ss_pred eecCccccHHHHHH----HhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLRE----IFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~----~f~~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~pl~v~~~~~ 242 (283)
...++.+..+.|+. ||+.||.|.+|++. ..+.+|.|||+|.+.++|-.|+.++.|+ +++|+.+.+...
T Consensus 15 nnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 15 NNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred hhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 55666677777776 99999999999985 5788999999999999999999986655 499999998643
No 86
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.34 E-value=2.1e-06 Score=61.81 Aligned_cols=52 Identities=31% Similarity=0.426 Sum_probs=42.9
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEecC---CCcceEEEEecCHHHHHHHHHhhc
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKSS---KKKGSALVVMATKSAAGAATGSVC 228 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~~---k~~g~A~V~F~~~~~A~~A~~~~~ 228 (283)
.+...|+++|+++|+.||.|..|.+... ..+|+|||+|.|.++|..|+....
T Consensus 6 lp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 6 LPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp STTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 3456899999999999999999999532 358999999999999999998743
No 87
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.33 E-value=2.3e-06 Score=86.44 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=55.4
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
....+++++|+++|+.||.|..|.|.. ++++|||||+|.+.++|..|+... +...+.+|.|.+.-
T Consensus 212 Lp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 212 VHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 445689999999999999999998852 457999999999999999999864 45568999999854
No 88
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.31 E-value=2.1e-06 Score=86.15 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=56.9
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~ 241 (283)
+.....+|+++|+++|+.||.|.+|.|.. +.++|+|||+|.+.++|.+|+.... .+.+.||.|.|.+
T Consensus 291 ~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 291 KNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred eCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 45556799999999999999999998842 5679999999999999999998644 4458999999865
No 89
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.30 E-value=9.8e-07 Score=77.04 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=56.8
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEee
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLP 239 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~ 239 (283)
++.||..+...-.|.++|+.+|.+||.|.+|.|+- ...+|||||-|....+|+.|+.++.|.. +.-|.|..
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 44454466556689999999999999999999952 5579999999999999999998865544 55666654
No 90
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.29 E-value=1.8e-06 Score=85.26 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=55.0
Q ss_pred ecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh----cCCCCCCeEEeecCC
Q 023364 176 KFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV----CGNLSNPLLVLPLQP 242 (283)
Q Consensus 176 ~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~----~g~~~~pl~v~~~~~ 242 (283)
.....+|+++|+++|+.||.|.+|.|. +.+|+|||+|.+.++|..|+... ....+.||.|.|...
T Consensus 9 nLp~~~te~~L~~~f~~fG~V~~v~i~--~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 9 NLPQDVVEADLVEALIPFGPVSYVMML--PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEE--CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 455669999999999999999999885 35699999999999999999752 345688999999754
No 91
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.27 E-value=2.6e-06 Score=85.45 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=56.6
Q ss_pred ecCccccHHHHHHHhcccCCeeEEEEe-c---CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 176 KFGEDYTAERLREIFSEFGKVEDVVIK-S---SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 176 ~~~~~~te~~L~~~f~~yG~V~~v~i~-~---~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
.....+|+++|+++|+.||.|.+|.|. + ++++|||||+|.+.++|.+|+... ....++|+.|.|.+.
T Consensus 7 nLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 7 DLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 355679999999999999999999983 2 567899999999999999999764 335689999999753
No 92
>smart00362 RRM_2 RNA recognition motif.
Probab=98.26 E-value=4.5e-06 Score=58.38 Aligned_cols=53 Identities=38% Similarity=0.560 Sum_probs=44.5
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHhhcC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGSVCG 229 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~A~~~~~g 229 (283)
....++.++|+++|..||+|..+.+.. +..+|+|||+|.+.++|..|+....|
T Consensus 7 l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 7 LPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 345689999999999999999998853 33579999999999999999976443
No 93
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=2e-06 Score=74.04 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=62.4
Q ss_pred EEEEeeecCccccHHHHHHHhcccCCeeEEEEec-CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEeecC
Q 023364 170 LKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQ 241 (283)
Q Consensus 170 lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A~~A~~--~~~g~~~~pl~v~~~~ 241 (283)
-.|-|.....++-+.+|.+||.+||.|..|.++. ....+||||+|++..+|+.||. +.+.+-.|-|.|++..
T Consensus 7 ~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 3677888888899999999999999999999954 4458899999999999999996 4678889999999853
No 94
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.5e-06 Score=90.32 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=49.7
Q ss_pred CCCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhcc
Q 023364 1 MDVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILK 65 (283)
Q Consensus 1 ~~~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~ 65 (283)
|++..-+-|+||.|+-+. +..-..+.|+++|++||.+||||||| +..+.|..+++||+.|+
T Consensus 1276 ~~mS~d~A~eiL~i~l~n-~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTN-EEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred CccchHHHHHHhccccCC-CCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence 455566789999998762 22234488999999999999999985 56789999999999998
No 95
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=6e-06 Score=75.57 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=57.2
Q ss_pred cceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEe
Q 023364 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVL 238 (283)
Q Consensus 167 ~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~ 238 (283)
-+||=| ...|...+|+.|+..|+.||+|..|.|+ +++++|||||||.+..+...|..+-.|.. +.-+.|.
T Consensus 101 y~TLFv--~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 101 YKTLFV--ARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cceeee--eeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 344444 6778889999999999999999999984 48899999999999999999998755544 5556665
No 96
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.19 E-value=4.3e-06 Score=81.44 Aligned_cols=67 Identities=27% Similarity=0.392 Sum_probs=56.6
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~ 241 (283)
......+|+++|.++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+..+.| ..+++|.|.|..
T Consensus 192 ~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 192 GNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred cCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 45566799999999999999999998852 36789999999999999999976544 458999999953
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.19 E-value=1.2e-05 Score=56.57 Aligned_cols=62 Identities=42% Similarity=0.529 Sum_probs=49.6
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEecC---CCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEe
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKSS---KKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVL 238 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~~---k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~pl~v~ 238 (283)
.....++++|.++|..||.|..+.+... ...|+|+|+|.+.++|..|+....+. .+..+.|.
T Consensus 7 l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 7 LPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 3445889999999999999999998532 34899999999999999999876555 35555554
No 98
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.14 E-value=6.3e-06 Score=80.31 Aligned_cols=72 Identities=26% Similarity=0.248 Sum_probs=58.8
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~ 241 (283)
++|-| ...+..+|+++|.++|+.||.|.+|.|+. ++.+|+|||+|.+.++|.+|+.. ...+.++|+.|.+..
T Consensus 90 ~~l~V--~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 90 RTVFV--LQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cEEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 34444 45666799999999999999999999852 56799999999999999999964 455668899988754
No 99
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.12 E-value=8.5e-06 Score=80.40 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=56.0
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
......+|+++|.++|+.||.|..|.|.. ++.+|||||+|.+.++|..|+..+ ..+.+.+|.|.+..
T Consensus 301 ~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 301 GNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45566799999999999999999988742 567999999999999999999764 44457889998853
No 100
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=5.6e-06 Score=74.94 Aligned_cols=64 Identities=25% Similarity=0.251 Sum_probs=54.5
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
....+|++.|+..|+.||+|..|.| -+.+|||||-|.+.|+|..||-. +...-+++.+-.|-+.
T Consensus 172 I~~~lte~~mr~~Fs~fG~I~EVRv--Fk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 172 IASGLTEDLMRQTFSPFGPIQEVRV--FKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred cCccccHHHHHHhcccCCcceEEEE--ecccceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 4456999999999999999999998 46789999999999999999975 4556688888888543
No 101
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4e-05 Score=64.17 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=89.2
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----Ch-hHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPD----DP-DAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~----~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...+||.++|..... ..+...+..-|.-...++|||+... ++ .|.+....|++||.+|.||-+|+.|=..+.
T Consensus 6 ~~~~ff~~Fg~e~~~---~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSF---KIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred hHHHHHHHhccccCC---CCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 346899999887663 3666667767999999999998321 11 478889999999999999999999987665
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023364 79 IKREKQQRQSQQDGKRRKMMSDLEERERAAFAPDPAVKARQEEEKIARQLKEEIERIRAMHENKR 143 (283)
Q Consensus 79 ~~~~~~~r~~~~~~~r~~~~~~l~~re~~~~~~~~~~~~~~~~~~~~~~l~ee~~r~r~~~~~~~ 143 (283)
..... ..+....-.-+++-|+.+|. ....+..+.......+...++....+.+++..+.+.
T Consensus 83 g~e~~---sne~stDpe~Lmevle~~E~-IS~~~De~~l~~lk~q~q~ri~q~~~qlge~~esk~ 143 (168)
T KOG3192|consen 83 GQEQT---SNELSTDPEFLMEVLEYHEA-ISEMDDEEDLKQLKSQNQERIAQCKQQLGEAFESKK 143 (168)
T ss_pred CCCCc---hhhhccCHHHHHHHHHHHHH-HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 42221 23344444566666666664 333333333444445566666777777777665553
No 102
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=6.4e-06 Score=78.66 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=59.9
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCCC-----CCCeEEee
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGNL-----SNPLLVLP 239 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~~-----~~pl~v~~ 239 (283)
.||+-.......+||.+|+++|.+||.|..|.|+. +-++||+||.|.+.++|..|+.+++... ..|+.|.+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 57777777778899999999999999999999964 4479999999999999999998755444 45666666
Q ss_pred cC
Q 023364 240 LQ 241 (283)
Q Consensus 240 ~~ 241 (283)
..
T Consensus 114 Ad 115 (510)
T KOG0144|consen 114 AD 115 (510)
T ss_pred cc
Confidence 53
No 103
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=1.3e-05 Score=65.31 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=54.2
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEe-c---CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeec
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIK-S---SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~-~---~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~ 240 (283)
.......+|+.|.+||++-|+|..|+|. + ...-|++||+|-+.++|+.|+++. .-+-..||.+.|=
T Consensus 42 gNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 42 GNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred eeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3333447799999999999999999993 3 234799999999999999999985 4455899999994
No 104
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.96 E-value=2.3e-05 Score=78.97 Aligned_cols=64 Identities=27% Similarity=0.263 Sum_probs=54.8
Q ss_pred ecCccccHHHHHHHhccc--CCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCCC
Q 023364 176 KFGEDYTAERLREIFSEF--GKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQPA 243 (283)
Q Consensus 176 ~~~~~~te~~L~~~f~~y--G~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~~ 243 (283)
......|+++|+++|+.| |.|..|.++ +++|||+|.+.++|.+|+... ..+.+++|.|.|..|+
T Consensus 240 NL~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 240 NLMTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred CCCCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 345568999999999999 999999773 579999999999999999754 4556899999998764
No 105
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.96 E-value=3.4e-05 Score=67.25 Aligned_cols=67 Identities=31% Similarity=0.396 Sum_probs=57.4
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
...+..+|+++|.++|..||.|..|.|.. ++.+|+|||+|.+.++|..|+... .-+.+.+|.|.+..
T Consensus 121 ~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 121 GNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred eCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 45667899999999999999999988842 578999999999999999999874 45558999999964
No 106
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.92 E-value=2.4e-05 Score=78.86 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=50.0
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHhhcCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGSVCGN 230 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~A~~~~~g~ 230 (283)
|--......+++++|.++|++||.|.+|.|+ +++++|||||+|.+.++|..||..+.+.
T Consensus 61 lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~ 122 (578)
T TIGR01648 61 VFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNY 122 (578)
T ss_pred EEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCC
Confidence 3335667789999999999999999999874 3678999999999999999999875543
No 107
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.90 E-value=2.9e-05 Score=74.56 Aligned_cols=75 Identities=31% Similarity=0.368 Sum_probs=61.9
Q ss_pred cccceEEEEeee-cCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 165 DKEKVLKVSWEK-FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 165 ~~~~~lkvkWk~-~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
+.+.+|||=+-+ .....|++.|..+|+.||.|+.|+.+ +-||||.|.+.++|.+|+.+. ..+-+.||-|...+
T Consensus 254 d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 254 DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 345567776666 44569999999999999999999874 459999999999999999874 55668999999888
Q ss_pred CC
Q 023364 242 PA 243 (283)
Q Consensus 242 ~~ 243 (283)
|+
T Consensus 330 P~ 331 (506)
T KOG0117|consen 330 PV 331 (506)
T ss_pred Ch
Confidence 75
No 108
>PLN03213 repressor of silencing 3; Provisional
Probab=97.88 E-value=4.5e-05 Score=74.15 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=59.2
Q ss_pred EEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCH--HHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 170 LKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATK--SAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 170 lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~--~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
.+|--......+++++|..+|+.||.|..|.|+..+.+|||||+|.+. .++.+||.. ++...+..|+|.-.+|
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 566556677789999999999999999999997434499999999987 678899875 4556688888876543
No 109
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.87 E-value=2.4e-05 Score=70.82 Aligned_cols=58 Identities=24% Similarity=0.530 Sum_probs=50.4
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHhhcCCCCCC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGSVCGNLSNP 234 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~p 234 (283)
.+..-+||+++.+|..||.|+.|.++ ++.+||||||-|.+.-+|..||..+.|.-..|
T Consensus 27 l~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmp 87 (371)
T KOG0146|consen 27 LNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMP 87 (371)
T ss_pred hcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCC
Confidence 45568899999999999999999995 36789999999999999999999887776433
No 110
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.6e-05 Score=70.70 Aligned_cols=56 Identities=21% Similarity=0.560 Sum_probs=48.3
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHH-hccCc
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYE-ILKDE 67 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~-vL~d~ 67 (283)
+.||.||||..+ ++..+++.+|..|++.+|||... +....+.|.+|.+||. ||+..
T Consensus 47 ~e~fril~v~e~-----~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEG-----ADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhccccc-----CchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHHH
Confidence 358999999998 89999999999999999999864 4456789999999998 77543
No 111
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.86 E-value=2.7e-05 Score=76.82 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=49.1
Q ss_pred HHHHHHHhcccCCeeEEEEec-------CCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEeecCC
Q 023364 183 AERLREIFSEFGKVEDVVIKS-------SKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVLPLQP 242 (283)
Q Consensus 183 e~~L~~~f~~yG~V~~v~i~~-------~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~pl~v~~~~~ 242 (283)
.++|+++|++||.|..|.|+. ....|+|||+|.+.++|..|+..+.|. .+.+|.|.|..+
T Consensus 433 ~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 433 YEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 367899999999999999852 124699999999999999999876554 488898888643
No 112
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=5e-05 Score=68.92 Aligned_cols=64 Identities=27% Similarity=0.350 Sum_probs=54.0
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEe-c---CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeec
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIK-S---SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPL 240 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~-~---~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~ 240 (283)
....++-+.|++-|.+||.|.+..|+ + .|+|||+||.|-..++|++||..+.| +.+..++.-|.
T Consensus 70 ls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 70 LSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred cchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 34468899999999999999998874 2 78999999999999999999998655 34667777885
No 113
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=7.1e-05 Score=71.74 Aligned_cols=73 Identities=23% Similarity=0.444 Sum_probs=59.3
Q ss_pred ceEEEEeee----------cCccccHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHhhcCCC--CC
Q 023364 168 KVLKVSWEK----------FGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGSVCGNL--SN 233 (283)
Q Consensus 168 ~~lkvkWk~----------~~~~~te~~L~~~f~~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~ 233 (283)
+.++|-|.. .+..+|...|.++|+.||.|.+|.+.+ ...+|+ ||+|++.++|.+|+....|.. ++
T Consensus 65 ~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 65 KPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred cEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 356777766 455789999999999999999998843 448999 999999999999998765554 78
Q ss_pred CeEEeecC
Q 023364 234 PLLVLPLQ 241 (283)
Q Consensus 234 pl~v~~~~ 241 (283)
++.|....
T Consensus 144 ki~vg~~~ 151 (369)
T KOG0123|consen 144 KIYVGLFE 151 (369)
T ss_pred eeEEeecc
Confidence 88887643
No 114
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.77 E-value=0.00011 Score=60.94 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=59.2
Q ss_pred cccceEEEEeeec--CccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecC
Q 023364 165 DKEKVLKVSWEKF--GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 165 ~~~~~lkvkWk~~--~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~ 241 (283)
+.+.||.|+|-.. ...++-..+..-++.||+|.+|.+ ++ +-+|+|+|.+..+|=+|+.+ ..+.++.-++-.|.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-cG--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsWqq 160 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-CG--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQQ 160 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-cC--CceEEEEehhhHHHHHHHHhhcCCCCCceEEeeccc
Confidence 4567899999663 334555667778899999999998 54 56999999999999999987 456667778888876
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 161 r 161 (166)
T PF15023_consen 161 R 161 (166)
T ss_pred c
Confidence 5
No 115
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=5.3e-05 Score=74.38 Aligned_cols=60 Identities=30% Similarity=0.302 Sum_probs=52.1
Q ss_pred ccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeec
Q 023364 181 YTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (283)
Q Consensus 181 ~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~ 240 (283)
..+++|..+|+.||.|..|+|+. ++..|||||.|....+|..|+... ....+.|+-|.|.
T Consensus 129 ~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 129 CKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred cCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 45669999999999999999963 667899999999999999999864 4455899999994
No 116
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=4.1e-05 Score=67.62 Aligned_cols=67 Identities=24% Similarity=0.373 Sum_probs=56.3
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCCC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQPA 243 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~~ 243 (283)
....+|+..|..-|-+||.|.+|.|+ +.+.+|||||+|.-.++|.+||.+ +..+++.-|+|-+..|.
T Consensus 18 ladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 18 LADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred chHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 34458899999999999999999995 278899999999999999999986 56677777888766553
No 117
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.67 E-value=8.3e-05 Score=71.48 Aligned_cols=66 Identities=24% Similarity=0.290 Sum_probs=55.8
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcCC---CCCCeEEeec
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCGN---LSNPLLVLPL 240 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~~g~---~~~pl~v~~~ 240 (283)
.....+..||+|..+|.+-|+|-.|.+. ++.++|||||+|.+.+.|..||.-+.+. .+.+|.|+..
T Consensus 89 GkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 89 GKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred cCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 4455679999999999999999999883 3789999999999999999999876555 6778888753
No 118
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.59 E-value=0.00025 Score=69.71 Aligned_cols=66 Identities=26% Similarity=0.391 Sum_probs=55.8
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
...++|++.|+.||.+||.|+.|.+. .+..+||+||+|.+.++|.+|+..+.| +-+.++.|.-+..
T Consensus 286 LHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 286 LHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred cccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 44579999999999999999999883 267899999999999999999876544 4488999887654
No 119
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.58 E-value=0.00017 Score=70.40 Aligned_cols=71 Identities=21% Similarity=0.143 Sum_probs=61.0
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
.|........++++.|.++|+..|.|.++.+.+ ++.+||||++|.+.++|..|+..+ ..+.+.+|.|.|-.
T Consensus 20 ~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 20 SVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred ceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 344466677899999999999999999999853 778999999999999999999874 66679999999954
No 120
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.55 E-value=0.00028 Score=63.87 Aligned_cols=61 Identities=28% Similarity=0.282 Sum_probs=51.7
Q ss_pred ccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEee
Q 023364 179 EDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLP 239 (283)
Q Consensus 179 ~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~ 239 (283)
.+.++..|-.+|++||.|.+|.|+. .+=+|||||.+.+-++|.+||..+ +.+.+.-|.|++
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 4578889999999999999999853 456999999999999999999875 445577888887
No 121
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.55 E-value=0.00027 Score=64.00 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=58.6
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~~~ 242 (283)
.....++|+|+|+.||+.-|.|++|.++. +.+-||+||-|-+.++|++||....|+. ...++|++..|
T Consensus 47 NYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 47 NYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred eecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 44566799999999999999999998853 5578999999999999999998766654 88899999876
No 122
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.54 E-value=0.00016 Score=62.18 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=57.1
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~--~~~g~~~~pl~v~~~~ 241 (283)
.......|++.|.+||-.-|+|.+|.|+. .+..|||||+|.+.++|+-|++ +...+.+.||+|.-++
T Consensus 15 gnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 15 GNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred ecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 44555689999999999999999999953 5579999999999999999997 4677889999997654
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.49 E-value=0.00036 Score=65.32 Aligned_cols=64 Identities=23% Similarity=0.403 Sum_probs=52.0
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC---CCCeEEeecCC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL---SNPLLVLPLQP 242 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~---~~pl~v~~~~~ 242 (283)
.+..+++.+|++-|-+||.|..|++. -.+|+|||+|.|.++|+.|........ +.-|.|.|-.|
T Consensus 236 l~d~v~e~dIrdhFyqyGeirsi~~~--~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 236 LNDEVLEQDIRDHFYQYGEIRSIRIL--PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccchhHHHHHHHHhhcCCeeeEEee--cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34479999999999999999999984 346799999999999999997643322 55678889766
No 124
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.48 E-value=1.7e-05 Score=68.19 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=53.8
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeec
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPL 240 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~ 240 (283)
.+...||.+|...||.||.|.+|.++ +++++||||+.|++..+-..||.+..|.. +..|.|..+
T Consensus 43 l~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 43 LPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred CcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34468999999999999999999884 37899999999999999999998865554 677777654
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00039 Score=65.30 Aligned_cols=65 Identities=22% Similarity=0.134 Sum_probs=50.4
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
.|.-.+.++|.-|||.||+|.++.|+. +.+--||||+|.+.++++.|.-.+ .-.-+.-++|.+.+
T Consensus 247 LNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 247 LNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred cCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 555588899999999999999998853 445679999999999999998542 22235667777643
No 126
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.35 E-value=0.00039 Score=70.84 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=53.9
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeec
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~ 240 (283)
....+++.+|..+|..||.|++|.++ ..+|||||++-...+|++|+.+ +++....-++|.|.
T Consensus 429 i~k~v~e~dL~~~feefGeiqSi~li--~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 429 IPKNVTEQDLANLFEEFGEIQSIILI--PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred ccchhhHHHHHHHHHhcccceeEeec--cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 55679999999999999999999984 5789999999999999999987 46666777778994
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.24 E-value=0.0007 Score=59.30 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=51.9
Q ss_pred cCccccHHHHHHHhccc-CCeeEEEE-e---cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 177 FGEDYTAERLREIFSEF-GKVEDVVI-K---SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~y-G~V~~v~i-~---~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
.+.++.+..+..+|..| |+|..+++ . +++++|||||+|++.+-|.=|... ++=++..=|.+.++.|
T Consensus 57 ~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 57 IPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 45568888899999999 77777777 2 377899999999999999887764 4555677777777755
No 128
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.22 E-value=0.00037 Score=65.65 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=48.4
Q ss_pred ccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEe
Q 023364 179 EDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVL 238 (283)
Q Consensus 179 ~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~ 238 (283)
.-+-||.|+.-|..||+|.+|.|. +.+.+|||||+|+-.++|..|+....|-. +..|+|.
T Consensus 123 fEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 123 FELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred EEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 346799999999999999999992 37899999999999999999998644432 4444443
No 129
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.19 E-value=0.00075 Score=58.16 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=56.6
Q ss_pred EEEEeeecCccccHHHHHHHhcccCCeeE--EEEe---cCCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeecC
Q 023364 170 LKVSWEKFGEDYTAERLREIFSEFGKVED--VVIK---SSKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQ 241 (283)
Q Consensus 170 lkvkWk~~~~~~te~~L~~~f~~yG~V~~--v~i~---~~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~~ 241 (283)
-++.-+.....+++..|.++||.||.+.. =++. +++++|+|||.|++.+++..|+....|.. +.|+.|++..
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 34444565557999999999999999876 2332 25789999999999999999999865554 7888888854
No 130
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00083 Score=64.47 Aligned_cols=64 Identities=22% Similarity=0.197 Sum_probs=55.2
Q ss_pred ccccHHHHHHHhcccCCeeEEEE-ecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 179 EDYTAERLREIFSEFGKVEDVVI-KSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 179 ~~~te~~L~~~f~~yG~V~~v~i-~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
...|+..|.++|+++|+|.+|.| ++..+-|||+|.|.+..+|+.|+.. ..-..+.|+.+.|++.
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 56899999999999999999988 2223889999999999999999975 3556689999999875
No 131
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00091 Score=52.68 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=41.2
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCc
Q 023364 11 VLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDE 67 (283)
Q Consensus 11 vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~ 67 (283)
||||.++ ++.+.||.|+|++-+.-|||+.. .| -.-.+|++|+++|...
T Consensus 61 IL~v~~s-----~~k~KikeaHrriM~~NHPD~GG-SP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 61 ILGVTPS-----LDKDKIKEAHRRIMLANHPDRGG-SP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HhCCCcc-----ccHHHHHHHHHHHHHcCCCcCCC-CH---HHHHHHHHHHHHHhcc
Confidence 9999987 89999999999999999999974 55 3445799999999654
No 132
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.08 E-value=0.00056 Score=62.77 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=53.5
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeecC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQ 241 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~~ 241 (283)
|+-........++..|+.+|.+||+|..+-|+ |.||||..++..+|..||+++.|+. +.-+.|+..+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee----cccceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 34444445568899999999999999999885 5699999999999999999876655 6666676654
No 133
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=96.95 E-value=0.0015 Score=64.46 Aligned_cols=68 Identities=25% Similarity=0.288 Sum_probs=58.1
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
...+...+.+.|.+.||.+|+|.++++.. +.++||+||+|+=.+++..|+.-..+ +-++.|.|.++++
T Consensus 11 ~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 11 SRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 55666788999999999999999988853 45799999999999999999987555 7789999998765
No 134
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.95 E-value=0.0028 Score=60.68 Aligned_cols=64 Identities=28% Similarity=0.288 Sum_probs=55.0
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQ 241 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~ 241 (283)
....+|.|.|-.+|+-||.|..|.|.. +++-.|+|.|++...|..|+.++.| ..+++|+|.+.+
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~-nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILY-NKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeee-cCCcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 445699999999999999999999964 4558999999999999999998544 458999999854
No 135
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.92 E-value=0.0022 Score=64.87 Aligned_cols=65 Identities=28% Similarity=0.280 Sum_probs=52.7
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEecCC-------CcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKSSK-------KKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQ 241 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~~k-------~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~ 241 (283)
.+...|.+.|...|+++|.|.++.|...+ +.|+|||+|.+.++|..|++.+.| .-+++|.+....
T Consensus 523 lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 523 LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 45567899999999999999999984211 349999999999999999998554 448888887754
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.71 E-value=0.0072 Score=54.74 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=61.7
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEE---ecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVI---KSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQPA 243 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i---~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~~ 243 (283)
..+|-......+++.++|+++|..||.+..|.| ..+.+.|+|-|.|...++|..|+.. ..-+-+.|+.+.-+.++
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 356655667778999999999999999988888 2477899999999999999999975 34445778888887665
Q ss_pred c
Q 023364 244 V 244 (283)
Q Consensus 244 ~ 244 (283)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 137
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.71 E-value=0.0053 Score=58.06 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=53.3
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEe---c-CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEee
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIK---S-SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLP 239 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~---~-~k~~g~A~V~F~~~~~A~~A~~--~~~g~~~~pl~v~~ 239 (283)
.....+.++++|...|..||+|..|.+- + .+.+||+||+|.+..+...||. +++.+.+.=|+|.-
T Consensus 216 aSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 216 ASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred eecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 4456679999999999999999999983 2 6689999999999999999986 45666666666643
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.69 E-value=0.013 Score=59.54 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=55.6
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEe---c----CCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIK---S----SKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~---~----~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~~ 241 (283)
...+..++++.|...|+.||+|..|.|. + ...+.||||-|.+..+|+.|+..+.|.. .-++.+.|..
T Consensus 180 ~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 180 GNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred ecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 4466779999999999999999999883 1 4568999999999999999999866654 6677777753
No 139
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.46 E-value=0.0043 Score=61.61 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=46.9
Q ss_pred ccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeec
Q 023364 181 YTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (283)
Q Consensus 181 ~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~ 240 (283)
.-..+|..||++||.|+...|++ ...+.|+||+|.+..+|...|.++ ..+-+.-|.|+-.
T Consensus 417 TRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 417 TRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred hhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 44788999999999999866643 456899999999999999999873 4444555666654
No 140
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.33 E-value=0.0042 Score=62.91 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=53.6
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
.....+...++.||+.||.|.+|.|+. +-.+|+|||+|-+..+|.+|+.++ .-+.+.-|.++|...
T Consensus 621 ipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 621 IPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 444578899999999999999999953 225999999999999999999763 445577888999764
No 141
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.32 E-value=0.0078 Score=41.67 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=34.1
Q ss_pred HHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHH
Q 023364 183 AERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAAT 224 (283)
Q Consensus 183 e~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~ 224 (283)
.+.+...|..||.|.++.+ +....+++|.|.+..+|+.|+
T Consensus 14 ~~~vl~~F~~fGeI~~~~~--~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 14 AEEVLEHFASFGEIVDIYV--PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHhcCCEEEEEc--CCCCcEEEEEECCHHHHHhhC
Confidence 4556778999999999988 356789999999999999985
No 142
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=96.29 E-value=0.0057 Score=55.76 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=43.8
Q ss_pred cccHHHHHHHhcccCCeeEEEE-e---cCCCcceEEEEecCHHHHHHHHHhhcCCC
Q 023364 180 DYTAERLREIFSEFGKVEDVVI-K---SSKKKGSALVVMATKSAAGAATGSVCGNL 231 (283)
Q Consensus 180 ~~te~~L~~~f~~yG~V~~v~i-~---~~k~~g~A~V~F~~~~~A~~A~~~~~g~~ 231 (283)
-+.+.+|..+|-.||.|.+..| . +..+|.|+||.|.+..+|..||....|+-
T Consensus 296 EFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQ 351 (371)
T KOG0146|consen 296 EFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQ 351 (371)
T ss_pred hhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchh
Confidence 3788999999999999988544 2 36689999999999999999999876653
No 143
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.12 E-value=0.0066 Score=59.82 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCh-------hHHHHHHHHHHHHHhc
Q 023364 23 LTEKEISKAYKWKALELHPDKRPDDP-------DAHDNFQKLKSSYEIL 64 (283)
Q Consensus 23 a~~~eIkkaYr~la~~~HPDk~~~~~-------~a~~~f~~i~~Ay~vL 64 (283)
++.++||++||+-+|..||||.++.+ -+.+.|..+++|+...
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999977653 2556677777777643
No 144
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.02 E-value=0.027 Score=53.56 Aligned_cols=74 Identities=26% Similarity=0.188 Sum_probs=59.2
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC----CCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN----LSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~----~~~pl~v~~~~~ 242 (283)
..|.+..-..-..+|.|.|..|+..-|+|..|+|- .|+--+|+|||++.+.|..|-.++.|- .=|.|+|++.+|
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIf-kkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIF-KKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEE-eccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 35666665566679999999999999999999983 456779999999999999998775443 257888888766
No 145
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.97 E-value=0.026 Score=44.65 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=33.9
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
.|+....+...+-++|.+.|+.||.|.-|-+.. --..|+|-|.+.++|..|+..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHH
Confidence 345565566688999999999999999888843 345899999999999999976
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.0069 Score=59.89 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=46.8
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV 227 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~ 227 (283)
+|-| -.....+++++|..||+.||.|..|.. +..+.|..||+|=++.+|+.|++..
T Consensus 77 ~L~v--~nl~~~Vsn~~L~~~f~~yGeir~ir~-t~~~~~~~~v~FyDvR~A~~Alk~l 132 (549)
T KOG4660|consen 77 TLVV--FNLPRSVSNDTLLRIFGAYGEIREIRE-TPNKRGIVFVEFYDVRDAERALKAL 132 (549)
T ss_pred eEEE--EecCCcCCHHHHHHHHHhhcchhhhhc-ccccCceEEEEEeehHhHHHHHHHH
Confidence 4444 334456999999999999999999876 6678999999999999999999863
No 147
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0047 Score=53.10 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=55.5
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 7 d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
|++.++|+++.+ ....+.++..|+.+.+.+|||+....+. +...+..++.||.+|.||-.|+.|-..+.
T Consensus 2 ~~~~~~~~~~~f---~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAF---QIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHH---HHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 567777877753 3566778899999999999999754432 44578999999999999999999987765
No 148
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=95.83 E-value=0.012 Score=54.14 Aligned_cols=58 Identities=22% Similarity=0.181 Sum_probs=49.9
Q ss_pred cccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecC
Q 023364 180 DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 180 ~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~ 241 (283)
.-+.++|+..|.+||+|.++.|. ++++||.|.-.++|..|++. +..+-+.||+|....
T Consensus 89 tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 89 TCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred cccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 45678999999999999998874 68999999999999999964 566779999998643
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=95.83 E-value=0.012 Score=57.30 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=45.1
Q ss_pred eeecCccccHHHHHHHhcccCCeeEEEE--ec--CCCcceEEEEecCHHHHHHHHHhh
Q 023364 174 WEKFGEDYTAERLREIFSEFGKVEDVVI--KS--SKKKGSALVVMATKSAAGAATGSV 227 (283)
Q Consensus 174 Wk~~~~~~te~~L~~~f~~yG~V~~v~i--~~--~k~~g~A~V~F~~~~~A~~A~~~~ 227 (283)
-+....+.+.+.|.+.|..||+|...-| +. ++..+||||+|.+.+++..|+.+.
T Consensus 293 V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 293 VKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred eecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 3445567899999999999999999776 33 555699999999999999999874
No 150
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.012 Score=58.34 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=44.0
Q ss_pred ccHHHHHHHhcccCCeeEEEEe-c--CCCcceEEEEecCHHHHHHHHHhhcCCC
Q 023364 181 YTAERLREIFSEFGKVEDVVIK-S--SKKKGSALVVMATKSAAGAATGSVCGNL 231 (283)
Q Consensus 181 ~te~~L~~~f~~yG~V~~v~i~-~--~k~~g~A~V~F~~~~~A~~A~~~~~g~~ 231 (283)
.-...|..+|++||+|.++.++ + ++.+|+.|++|++..+|..|++...|..
T Consensus 76 klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 76 KLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKR 129 (698)
T ss_pred HHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccce
Confidence 3456678999999999999995 3 7789999999999999999999876654
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=95.71 E-value=0.025 Score=50.90 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=54.3
Q ss_pred EeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEeecC
Q 023364 173 SWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (283)
Q Consensus 173 kWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~~~~ 241 (283)
.|+....+.|-+.+...|..+|.|..|.|++ +..+|||+|+|.+.+.+++|+. +...+.+.++.|+|..
T Consensus 105 ~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 105 WVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred EEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 3344445556666999999999999888864 3468999999999999999998 5566668888888854
No 152
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=95.43 E-value=0.016 Score=57.38 Aligned_cols=62 Identities=31% Similarity=0.330 Sum_probs=52.6
Q ss_pred cccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEeecC
Q 023364 180 DYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (283)
Q Consensus 180 ~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~~~~ 241 (283)
..+.-+|.++|+.+|+|.+|.|+. ..++|.|+|+|-+.++.-.||. .+.-+.+.|+.|...+
T Consensus 190 r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 190 RNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred cCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccH
Confidence 467889999999999999999963 5589999999999999988884 3566778999998754
No 153
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=95.39 E-value=0.012 Score=55.16 Aligned_cols=48 Identities=35% Similarity=0.540 Sum_probs=41.2
Q ss_pred ccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh
Q 023364 179 EDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 179 ~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
...|++.|++.|++||.|.++++.. .+++|++||+|++.+....++..
T Consensus 16 w~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 16 WETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred ccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc
Confidence 3578999999999999999988842 67899999999999888777765
No 154
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=95.24 E-value=0.025 Score=53.12 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=56.0
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEe-c---CCCcceEEEEecCHHHHHHHHHhh-cCCCCCCeEEeecC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK-S---SKKKGSALVVMATKSAAGAATGSV-CGNLSNPLLVLPLQ 241 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~-~---~k~~g~A~V~F~~~~~A~~A~~~~-~g~~~~pl~v~~~~ 241 (283)
+.||.-.....++++.+|++.|.+||.|..+++. + .+.+|++||+|.+.+++..++... ..+-..++.|.-..
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeecc
Confidence 5566666777889999999999999999998874 2 568999999999999999988653 33334444444333
No 155
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=95.23 E-value=0.061 Score=52.19 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=53.0
Q ss_pred eecCccccHHHHHHHhc-ccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEee
Q 023364 175 EKFGEDYTAERLREIFS-EFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLP 239 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~-~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~ 239 (283)
.....+|-=.+|.+||. +-|.|.-|.++ ++|.+|||+|||++.+.+++|+.. .+.....||.|..
T Consensus 50 tNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 50 TNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 44555666778999885 68899999885 388999999999999999999976 4666788888864
No 156
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.04 E-value=0.014 Score=51.83 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=47.4
Q ss_pred CccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeecC
Q 023364 178 GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQ 241 (283)
Q Consensus 178 ~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~~ 241 (283)
.....+.+|..+|..||.|-+|.| +.|++||+|.+..+|..||..+.|.. .--+.|+|..
T Consensus 10 ~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 10 PYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 345678999999999999999998 57899999999999999998643332 2226677754
No 157
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.021 Score=49.03 Aligned_cols=54 Identities=30% Similarity=0.452 Sum_probs=45.2
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--Ch-----hHHHHHHHHHHHHHhc
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPD--DP-----DAHDNFQKLKSSYEIL 64 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~--~~-----~a~~~f~~i~~Ay~vL 64 (283)
.+.|.+||+... .+..+|+++|+++....|||+-.+ .| .+.+.++.|+.||+.+
T Consensus 113 ~~~l~~l~~~~~-----~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIK-----ADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchh-----hhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 688999999997 899999999999999999998422 22 3677888999988753
No 158
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.63 E-value=0.12 Score=49.33 Aligned_cols=66 Identities=24% Similarity=0.265 Sum_probs=52.8
Q ss_pred eeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeec
Q 023364 174 WEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (283)
Q Consensus 174 Wk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~ 240 (283)
+.-....++-|.|..||=-||.|+.|.+. ..+.|.|+|++.+..+.+.|+.++ .-+++.-|.|.+.
T Consensus 293 yGLdh~k~N~drlFNl~ClYGNV~rvkFm-kTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 293 YGLDHGKMNCDRLFNLFCLYGNVERVKFM-KTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred EeccccccchhhhhhhhhhcCceeeEEEe-ecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 33344457789999999999999999884 457899999999999999999874 4445777777764
No 159
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.58 E-value=0.068 Score=50.35 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=53.9
Q ss_pred ccceEEEEeeecCc---------cccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC--CCC
Q 023364 166 KEKVLKVSWEKFGE---------DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL--SNP 234 (283)
Q Consensus 166 ~~~~lkvkWk~~~~---------~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~p 234 (283)
.+++|.|+.--... .--+++|++-+++||+|..|+|-..-..|-+.|.|.+.+.|..+|+.+.|.. +.-
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 34577776555211 1124667777999999999999556678999999999999999999877764 444
Q ss_pred eEEee
Q 023364 235 LLVLP 239 (283)
Q Consensus 235 l~v~~ 239 (283)
|+.+.
T Consensus 344 l~A~i 348 (382)
T KOG1548|consen 344 LTASI 348 (382)
T ss_pred EEEEE
Confidence 44443
No 160
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=94.44 E-value=0.047 Score=48.59 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=53.6
Q ss_pred ccceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEee
Q 023364 166 KEKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLP 239 (283)
Q Consensus 166 ~~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~A~~--~~~g~~~~pl~v~~ 239 (283)
.++||.| ...-...|++.|.++|-.=|+|..|.|++ +.+-.||+|.|.+.-+..-|+. ++..+++.|+.+.+
T Consensus 8 ~drtl~v--~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLV--QNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhhHHHH--HhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3444444 22334589999999999999999999964 2233399999999999999986 44556677777765
No 161
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=93.39 E-value=0.13 Score=45.95 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=44.7
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL 231 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~ 231 (283)
.+...|||.|+.+|+.|--..-+.|........|||+|.+++.|..|+.++.|+.
T Consensus 218 l~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 218 LGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred cCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 4556899999999999986666666444456789999999999999999987764
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=92.66 E-value=0.072 Score=51.47 Aligned_cols=47 Identities=32% Similarity=0.363 Sum_probs=38.5
Q ss_pred cccHHHHHHHhcccCCeeEEEEecC-----------C------CcceEEEEecCHHHHHHHHHh
Q 023364 180 DYTAERLREIFSEFGKVEDVVIKSS-----------K------KKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 180 ~~te~~L~~~f~~yG~V~~v~i~~~-----------k------~~g~A~V~F~~~~~A~~A~~~ 226 (283)
+..-+.|..||+.+|.|..|.|... + .+-+|+|+|.+.++|.+|..-
T Consensus 242 Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 242 DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3445999999999999999999311 1 367899999999999999864
No 163
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=92.46 E-value=0.077 Score=47.24 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=46.9
Q ss_pred CccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEe
Q 023364 178 GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVL 238 (283)
Q Consensus 178 ~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~ 238 (283)
...++..+|.+.|.+||.+..+++ .+++|||+|++.++|..|+.. +..+.+++|.+.
T Consensus 108 ~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 108 SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 344777899999999999955544 689999999999999999975 566778888883
No 164
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=91.82 E-value=0.19 Score=48.48 Aligned_cols=71 Identities=23% Similarity=0.177 Sum_probs=51.6
Q ss_pred EEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC----CCCCeEEeec
Q 023364 170 LKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN----LSNPLLVLPL 240 (283)
Q Consensus 170 lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~----~~~pl~v~~~ 240 (283)
|++-....-..+|-|.|..+|++||.|..|+--....-=.|+|.|.+...|..|-..+.|. .-|.|++.+.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 3333333445689999999999999999876533333446999999999999998765443 3677888763
No 165
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.35 E-value=0.74 Score=35.03 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=35.2
Q ss_pred cccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh
Q 023364 180 DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV 227 (283)
Q Consensus 180 ~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~ 227 (283)
.+-..+|.+||+.||.|.--.| + -.+|||.....+.|..|+...
T Consensus 19 eWK~~DI~qlFspfG~I~VsWi-~---dTSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 19 EWKTSDIYQLFSPFGQIYVSWI-N---DTSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp T--HHHHHHHCCCCCCEEEEEE-C---TTEEEEEECCCHHHHHHHHHH
T ss_pred HhhhhhHHHHhccCCcEEEEEE-c---CCcEEEEeecHHHHHHHHHHh
Confidence 3667889999999999977666 3 358999999999999887764
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=91.11 E-value=0.53 Score=36.93 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=35.2
Q ss_pred cHHHHHHHhcccCCeeEEEE-----------ecCCCcceEEEEecCHHHHHHHHHhh
Q 023364 182 TAERLREIFSEFGKVEDVVI-----------KSSKKKGSALVVMATKSAAGAATGSV 227 (283)
Q Consensus 182 te~~L~~~f~~yG~V~~v~i-----------~~~k~~g~A~V~F~~~~~A~~A~~~~ 227 (283)
..+.+.+.|++||.|....- ......+.--|.|++..+|..|+..+
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~N 74 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKN 74 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhC
Confidence 46778899999999988750 01235678999999999999999764
No 167
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.79 E-value=0.37 Score=47.23 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=54.3
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHH-HhhcCCCCCCeEEeecCCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAAT-GSVCGNLSNPLLVLPLQPA 243 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~-~~~~g~~~~pl~v~~~~~~ 243 (283)
.|.+.-.+.+. -|-.+|..-|.+||.|.+|-|. -..-.|+|+|.+..+|-.|. -+.--+-+.+++|-|..|.
T Consensus 374 ~l~lek~~~gl-nt~a~ln~hfA~fG~i~n~qv~--~~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGL-NTIADLNPHFAQFGEIENIQVD--YSSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCC-chHhhhhhhhhhcCcccccccc--CchhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 45554444433 6788899999999999999983 22568999999999995454 4456666889999998764
No 168
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=90.58 E-value=0.33 Score=44.15 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=42.6
Q ss_pred ccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcCCC
Q 023364 181 YTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCGNL 231 (283)
Q Consensus 181 ~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~~g~~ 231 (283)
.+.++|-..|.+|-.-..-.++ +++++||+||.|.+..++..|+....|..
T Consensus 202 vnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky 256 (290)
T KOG0226|consen 202 VNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY 256 (290)
T ss_pred ccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc
Confidence 8899999999999866554442 37899999999999999999998876665
No 169
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=90.47 E-value=0.48 Score=47.19 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=43.2
Q ss_pred HHHHHHhcccCCeeEEEEec-------CCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeec
Q 023364 184 ERLREIFSEFGKVEDVVIKS-------SKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPL 240 (283)
Q Consensus 184 ~~L~~~f~~yG~V~~v~i~~-------~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~ 240 (283)
++++.-|++||.|..|.|+- .-.-|..||+|++.++++.|...+.|.. +..+..++.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 55667789999999999942 1247899999999999999999876654 444444444
No 170
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=90.35 E-value=0.89 Score=34.72 Aligned_cols=53 Identities=25% Similarity=0.275 Sum_probs=36.8
Q ss_pred HHHHHHHhcccC-CeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 183 AERLREIFSEFG-KVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 183 e~~L~~~f~~yG-~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
..-|+.|+...| .|..|. .|+|+|-|.+.+.|..|.+.. -.-+++-+.|.+..
T Consensus 20 ~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 20 KNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred HHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 466888999987 776663 489999999999999999764 44568888888863
No 171
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=90.31 E-value=1.1 Score=44.22 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=47.3
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHhhcCCCCCCeE
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGSVCGNLSNPLL 236 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~ 236 (283)
....-|+++|.++|+.- .|+++++. +++..|=|+|||.+.+++.+|++......+++-.
T Consensus 18 LPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYI 78 (510)
T KOG4211|consen 18 LPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYI 78 (510)
T ss_pred CCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceE
Confidence 44456899999999977 57777774 3788999999999999999999886666655543
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.43 E-value=0.74 Score=41.93 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=53.9
Q ss_pred cceEEEEeee--------cCccccHHHHHHHhcccCCeeEEEE-ec--CCCcceEEEEecCHHHHHHHHHhh--cCCC--
Q 023364 167 EKVLKVSWEK--------FGEDYTAERLREIFSEFGKVEDVVI-KS--SKKKGSALVVMATKSAAGAATGSV--CGNL-- 231 (283)
Q Consensus 167 ~~~lkvkWk~--------~~~~~te~~L~~~f~~yG~V~~v~i-~~--~k~~g~A~V~F~~~~~A~~A~~~~--~g~~-- 231 (283)
.+.|.|++.. .....+-|.|..-|+.||+|+.-++ .+ .+..|-++|+|...-.|.+|...+ .|+.
T Consensus 21 ~~~lr~rfa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~ 100 (275)
T KOG0115|consen 21 GRSLRVRFAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGT 100 (275)
T ss_pred CCceEEEeeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccC
Confidence 3456665554 3345788999999999999999555 33 667889999999999999998763 3333
Q ss_pred --CCCeEEeec
Q 023364 232 --SNPLLVLPL 240 (283)
Q Consensus 232 --~~pl~v~~~ 240 (283)
..|..|.+.
T Consensus 101 ~~~~p~~VeP~ 111 (275)
T KOG0115|consen 101 TGGRPVGVEPM 111 (275)
T ss_pred CCCCccCCChh
Confidence 455666654
No 173
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=88.00 E-value=1.3 Score=43.28 Aligned_cols=69 Identities=26% Similarity=0.298 Sum_probs=50.9
Q ss_pred ccceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEe
Q 023364 166 KEKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVL 238 (283)
Q Consensus 166 ~~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~ 238 (283)
+.++|.| +....++|=..|++-|..||.|.-+.|. .++.+| +|-|.+.++|+.|+.-..|.. ..-+.|.
T Consensus 535 Ka~qIii--rNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 535 KACQIII--RNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred cccEEEE--ecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 3445555 4455678999999999999999987773 356666 999999999999998655543 4444443
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=87.77 E-value=0.34 Score=44.01 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=42.4
Q ss_pred HHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEeec
Q 023364 184 ERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVLPL 240 (283)
Q Consensus 184 ~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~pl~v~~~ 240 (283)
+.+.++-.+||.|+++.|-+ .-..|-++|.|...++|++|+....+. .+.|++.+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 33334445999999997722 346899999999999999999885544 3777777653
No 175
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=86.93 E-value=5 Score=36.13 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=52.1
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe-cCCC----cceEEEEecCHHHHHHHHHhhcCCC-----CCCeEE
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK-SSKK----KGSALVVMATKSAAGAATGSVCGNL-----SNPLLV 237 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~-~~k~----~g~A~V~F~~~~~A~~A~~~~~g~~-----~~pl~v 237 (283)
+||=| .....++-.-+|+.||..|---+...++ +++. +-.|||+|.+...|..|+..+.|.. ..-|++
T Consensus 35 RTLFV--SGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 35 RTLFV--SGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ceeee--ccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 34444 3444568889999999999777776664 3332 4799999999999999998876654 445667
Q ss_pred eecC
Q 023364 238 LPLQ 241 (283)
Q Consensus 238 ~~~~ 241 (283)
+..+
T Consensus 113 ElAK 116 (284)
T KOG1457|consen 113 ELAK 116 (284)
T ss_pred eehh
Confidence 6643
No 176
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=86.13 E-value=3.3 Score=36.97 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=53.2
Q ss_pred ccceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC---CCCeEEeec
Q 023364 166 KEKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL---SNPLLVLPL 240 (283)
Q Consensus 166 ~~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~---~~pl~v~~~ 240 (283)
..+++.+.|... ..+.+.|..+|..|+--..|.++ ...+|.|||+|.+...|..|..+..|.. .+++.|.+.
T Consensus 145 pn~ilf~~niP~--es~~e~l~~lf~qf~g~keir~i-~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 145 PNNILFLTNIPS--ESESEMLSDLFEQFPGFKEIRLI-PPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CceEEEEecCCc--chhHHHHHHHHhhCcccceeEec-cCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 345677777663 35788899999999988888874 3468999999999999888887755543 555555543
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.69 E-value=1.5 Score=40.87 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=38.9
Q ss_pred HHHHHHHhcccCCeeEEEEe--c---CCCcceEEEEecCHHHHHHHHHhhcCCC
Q 023364 183 AERLREIFSEFGKVEDVVIK--S---SKKKGSALVVMATKSAAGAATGSVCGNL 231 (283)
Q Consensus 183 e~~L~~~f~~yG~V~~v~i~--~---~k~~g~A~V~F~~~~~A~~A~~~~~g~~ 231 (283)
++.+.+-+.+||.|.+|+|- . ...--.-||+|...++|.+|+-.+.|.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy 353 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY 353 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce
Confidence 45667889999999999882 1 2334568999999999999998876654
No 178
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=83.66 E-value=1.7 Score=45.81 Aligned_cols=68 Identities=22% Similarity=0.168 Sum_probs=53.7
Q ss_pred EeeecCccc-cHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh----hcCCCCCCeEEeecCC
Q 023364 173 SWEKFGEDY-TAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS----VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 173 kWk~~~~~~-te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~----~~g~~~~pl~v~~~~~ 242 (283)
.|....+.| ....|...|+.||+|..|.+ ...--||.|.|.+...|..|+.. ..|.+..++.|.+..+
T Consensus 458 ~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 458 LQSGGLGPWSPVSRLNREFDRFGPIRIIDY--RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred eccCCCCCCChHHHHHHHhhccCcceeeec--ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 455533334 47888999999999999887 34556999999999999999986 4666788999998765
No 179
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=83.15 E-value=2.6 Score=41.68 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=43.7
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEE-Ee---cCCCcceEEEEecCHHHHHHHHHhh
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVV-IK---SSKKKGSALVVMATKSAAGAATGSV 227 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~-i~---~~k~~g~A~V~F~~~~~A~~A~~~~ 227 (283)
+|+| .-.....|+++|.++|+--=.|.+.+ ++ ..+..|=|||.|++.+.|+.|++.+
T Consensus 105 vVRL--RGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh 165 (510)
T KOG4211|consen 105 VVRL--RGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH 165 (510)
T ss_pred eEEe--cCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH
Confidence 4555 34445569999999999887777733 22 2668999999999999999999753
No 180
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=81.51 E-value=0.96 Score=42.03 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=50.8
Q ss_pred CccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecC
Q 023364 178 GEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 178 ~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~ 241 (283)
...++.++|...|..+|.|..|.++. +..+|+|+|.|.+...+..|+.. ..-..+.|+.+..-.
T Consensus 194 ~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 194 DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 44689999999999999999999853 56799999999999999999884 233335566666544
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=80.90 E-value=2.8 Score=35.17 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=44.9
Q ss_pred cceEEEEeee----cCccccH---HHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEe
Q 023364 167 EKVLKVSWEK----FGEDYTA---ERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVL 238 (283)
Q Consensus 167 ~~~lkvkWk~----~~~~~te---~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~ 238 (283)
+.||.|.-.. .+..|++ +.|.+.|+.||.|.-|.+.. +.-+|+|.+..+|.+|+.- .....+..|.|.
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~dg~~v~g~~l~i~ 102 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSLDGIQVNGRTLKIR 102 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHGCCSEETTEEEEEE
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHccCCcEECCEEEEEE
Confidence 4467776665 1223554 35567788899888777642 5799999999999999864 344456667665
Q ss_pred e
Q 023364 239 P 239 (283)
Q Consensus 239 ~ 239 (283)
.
T Consensus 103 L 103 (146)
T PF08952_consen 103 L 103 (146)
T ss_dssp E
T ss_pred e
Confidence 4
No 182
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=80.37 E-value=3.5 Score=33.76 Aligned_cols=47 Identities=26% Similarity=0.210 Sum_probs=30.2
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhc
Q 023364 9 YRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEIL 64 (283)
Q Consensus 9 Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL 64 (283)
..||||++. .+.++|.+.|..|-..-+|++.. .. -.=.+|..|.+.|
T Consensus 61 ~~ILnv~~~-----~~~eeI~k~y~~Lf~~Nd~~kGG-Sf---YLQSKV~rAKErl 107 (127)
T PF03656_consen 61 RQILNVKEE-----LSREEIQKRYKHLFKANDPSKGG-SF---YLQSKVFRAKERL 107 (127)
T ss_dssp HHHHT--G-------SHHHHHHHHHHHHHHT-CCCTS--H---HHHHHHHHHHHHH
T ss_pred HHHcCCCCc-----cCHHHHHHHHHHHHhccCCCcCC-CH---HHHHHHHHHHHHH
Confidence 469999996 89999999999999999999863 22 1223455555544
No 183
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.16 E-value=2.9 Score=36.38 Aligned_cols=58 Identities=21% Similarity=0.099 Sum_probs=39.9
Q ss_pred cHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc----CCCCCCeEEeecC
Q 023364 182 TAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC----GNLSNPLLVLPLQ 241 (283)
Q Consensus 182 te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~----g~~~~pl~v~~~~ 241 (283)
..+.|+.+|..||.+..+..+ ++-+..+|+|.+.++|..|..... .+.+..+.+-+.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L--~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL--KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE--TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEc--CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 457899999999999888774 567899999999999999987644 2335556666554
No 184
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=79.86 E-value=2.6 Score=39.93 Aligned_cols=40 Identities=25% Similarity=0.524 Sum_probs=30.6
Q ss_pred HHhcccCCeeEEEEe--c---CCCcceE--EEEecCHHHHHHHHHhh
Q 023364 188 EIFSEFGKVEDVVIK--S---SKKKGSA--LVVMATKSAAGAATGSV 227 (283)
Q Consensus 188 ~~f~~yG~V~~v~i~--~---~k~~g~A--~V~F~~~~~A~~A~~~~ 227 (283)
++|++||.|..|+|- . ....+-+ +|+|.+.++|..+|..-
T Consensus 139 eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v 185 (480)
T COG5175 139 EYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV 185 (480)
T ss_pred hhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHh
Confidence 799999999999992 1 1112223 89999999999999763
No 185
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=79.70 E-value=1.9 Score=45.28 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=50.5
Q ss_pred cccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC----CCCeEEeecCC
Q 023364 180 DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL----SNPLLVLPLQP 242 (283)
Q Consensus 180 ~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~----~~pl~v~~~~~ 242 (283)
+.+...|-.+|+.||.|.+.+.+ +.-..|+|+|.+.+.|..|..+..|.. +.|-+|.+.++
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtl--r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTL--RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheec--ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 57788999999999999999884 334689999999999999998866654 78888887543
No 186
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=76.73 E-value=6.5 Score=37.98 Aligned_cols=62 Identities=26% Similarity=0.230 Sum_probs=47.1
Q ss_pred ccceEEEEeeecCccccHHHHHHHhcccC----CeeEEEEe---cCCCcceEEEEecCHHHHHHHHHhh
Q 023364 166 KEKVLKVSWEKFGEDYTAERLREIFSEFG----KVEDVVIK---SSKKKGSALVVMATKSAAGAATGSV 227 (283)
Q Consensus 166 ~~~~lkvkWk~~~~~~te~~L~~~f~~yG----~V~~v~i~---~~k~~g~A~V~F~~~~~A~~A~~~~ 227 (283)
+.+.+.|+......+-++.++.++|..-. .++.|.++ +++..|-|||.|+..+.|..|++.+
T Consensus 158 k~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~kh 226 (508)
T KOG1365|consen 158 KENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKH 226 (508)
T ss_pred cccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHH
Confidence 45578888888777889999999997432 33333332 4778999999999999999999753
No 187
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=76.59 E-value=2.8 Score=43.98 Aligned_cols=47 Identities=30% Similarity=0.337 Sum_probs=41.3
Q ss_pred cccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh
Q 023364 180 DYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 180 ~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
.-|.+.|+.||+++|.|.++.+++ ++.+|.|+|.|.+..+|..++..
T Consensus 747 ~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s 796 (881)
T KOG0128|consen 747 QGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVAS 796 (881)
T ss_pred CCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhccc
Confidence 468899999999999999987643 78899999999999999888764
No 188
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=74.72 E-value=3.5 Score=38.74 Aligned_cols=55 Identities=29% Similarity=0.450 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC----ChhHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 23 LTEKEISKAYKWKALELHPDKRPD----DPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 23 a~~~eIkkaYr~la~~~HPDk~~~----~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
++...|..+|+..++..||++... .....+.|.+|..||.||.+...|..+|...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 678899999999999999998631 1235677999999999999976666776655
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=74.63 E-value=11 Score=26.94 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=34.0
Q ss_pred cccHHHHHHHhccc----CCeeEEEEecCCCcceEEEEecCHHHHHHHHHh
Q 023364 180 DYTAERLREIFSEF----GKVEDVVIKSSKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 180 ~~te~~L~~~f~~y----G~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
.++-+++..+|..| |+..-=.| ++ .+|-|+|.+.+.|..|+.+
T Consensus 15 ~lsT~dI~~y~~~y~~~~~~~~IEWI-dD---tScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 15 ELSTDDIKAYFSEYFDEEGPFRIEWI-DD---TSCNVVFKDEETAARALVA 61 (62)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEe-cC---CcEEEEECCHHHHHHHHHc
Confidence 48899999999999 65533333 43 3799999999999999875
No 190
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=73.89 E-value=3.5 Score=41.21 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=50.3
Q ss_pred ccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEee
Q 023364 179 EDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVLP 239 (283)
Q Consensus 179 ~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~pl~v~~ 239 (283)
...+++.+.++...||++....+.. +.++||||.+|-+..-...|+..+.|. ..++|.|..
T Consensus 299 ~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 299 LYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred CccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 4588999999999999999976632 568999999999999999998875554 478888875
No 191
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=73.79 E-value=20 Score=27.88 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=38.4
Q ss_pred eecCccccHHHHHHHhcc--cCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhh
Q 023364 175 EKFGEDYTAERLREIFSE--FGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSV 227 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~--yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~ 227 (283)
+..+-.||.+.|.+++.. .|...=+.++ ...+.|||||-|.+.+.|..-...-
T Consensus 7 rNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f 65 (97)
T PF04059_consen 7 RNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAF 65 (97)
T ss_pred ecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHH
Confidence 444445899999888765 3555556663 2557999999999999998776653
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.58 E-value=7.8 Score=36.30 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=44.8
Q ss_pred EEEeee-cCc-cccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCCC
Q 023364 171 KVSWEK-FGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNLS 232 (283)
Q Consensus 171 kvkWk~-~~~-~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~~ 232 (283)
--.|-. .+. .-.-..|..+|++||.|..++. ..+-.+-.|-|.+..+|.+|+...--.++
T Consensus 196 ~D~WVTVfGFppg~~s~vL~~F~~cG~Vvkhv~--~~ngNwMhirYssr~~A~KALskng~ii~ 257 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQVSIVLNLFSRCGEVVKHVT--PSNGNWMHIRYSSRTHAQKALSKNGTIID 257 (350)
T ss_pred ccceEEEeccCccchhHHHHHHHhhCeeeeeec--CCCCceEEEEecchhHHHHhhhhcCeeec
Confidence 356766 221 1345678899999999999887 36678999999999999999976433333
No 193
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=68.67 E-value=17 Score=34.65 Aligned_cols=66 Identities=21% Similarity=0.201 Sum_probs=52.8
Q ss_pred eecCccccHHHHHHHhcccCCeeE--------EEE-e--cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeec
Q 023364 175 EKFGEDYTAERLREIFSEFGKVED--------VVI-K--SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~--------v~i-~--~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~ 240 (283)
...+.++|-+.+.++|+++|.|.. |.+ . .++-+|=|+|+|--.++...|+.. +..+.++-|+|+-.
T Consensus 140 sgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 140 SGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERA 218 (382)
T ss_pred cCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehh
Confidence 446678999999999999997754 222 1 166799999999999999999986 46666888999864
No 194
>PF13446 RPT: A repeated domain in UCH-protein
Probab=65.06 E-value=11 Score=26.39 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.5
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 023364 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKAL 37 (283)
Q Consensus 7 d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~ 37 (283)
+-|.+|||+++ .+++.|-.+|.....
T Consensus 6 ~Ay~~Lgi~~~-----~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDED-----TDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCC-----CCHHHHHHHHHHHHH
Confidence 45899999887 899999999998775
No 195
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=63.90 E-value=5.1 Score=36.65 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=40.7
Q ss_pred eeecCccccHHHHHHHhcccCCeeEEEEec---C---------C----CcceEEEEecCHHHHHHHHHh
Q 023364 174 WEKFGEDYTAERLREIFSEFGKVEDVVIKS---S---------K----KKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 174 Wk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~---------k----~~g~A~V~F~~~~~A~~A~~~ 226 (283)
....+..++...|++||+.||.|-.|.+-. . + .+.-|+|+|.+...|.....-
T Consensus 79 lS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~ 147 (278)
T KOG3152|consen 79 LSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAEL 147 (278)
T ss_pred eccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 345677799999999999999999999931 1 1 244588999999988765543
No 196
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=63.24 E-value=17 Score=29.05 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCChh
Q 023364 23 LTEKEISKAYKWKALELHPDKRPDDPD 49 (283)
Q Consensus 23 a~~~eIkkaYr~la~~~HPDk~~~~~~ 49 (283)
.+..+++.|.|..-+..|||.....|.
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~ 32 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPE 32 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChH
Confidence 578899999999999999998765664
No 197
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=61.66 E-value=9.8 Score=36.25 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=51.0
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeE--------EEE----ecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEE
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVED--------VVI----KSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLV 237 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~--------v~i----~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v 237 (283)
.-|.+. ...++++|.+.|.+-|.|.. |.| .+.+.||-|.|.|.+...|..||.. ...+..|++.|
T Consensus 70 ~v~g~~-d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikv 148 (351)
T KOG1995|consen 70 FVWGCP-DSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKV 148 (351)
T ss_pred eeeccC-ccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchh
Confidence 445554 34789999999888887643 222 1255799999999999999999975 34455688988
Q ss_pred eecCC
Q 023364 238 LPLQP 242 (283)
Q Consensus 238 ~~~~~ 242 (283)
..++.
T Consensus 149 s~a~~ 153 (351)
T KOG1995|consen 149 SLAER 153 (351)
T ss_pred hhhhh
Confidence 87653
No 198
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=59.85 E-value=15 Score=26.32 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=24.2
Q ss_pred HHHHHHhcccCCeeEEEEe---cCCCcceEEEEecC
Q 023364 184 ERLREIFSEFGKVEDVVIK---SSKKKGSALVVMAT 216 (283)
Q Consensus 184 ~~L~~~f~~yG~V~~v~i~---~~k~~g~A~V~F~~ 216 (283)
..|++.||..|+|.-+.+- ++..+-++=|+|++
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~eS~~~~~~GGvV~eD 44 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYESDEDRLTGGVVMED 44 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccccCCCeEeccEEEeC
Confidence 5699999999999999883 24445555566655
No 199
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=59.00 E-value=8.6 Score=35.70 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=28.5
Q ss_pred eEEEEeee-----cCccccHHHHHHHhcccCCeeEEEEe
Q 023364 169 VLKVSWEK-----FGEDYTAERLREIFSEFGKVEDVVIK 202 (283)
Q Consensus 169 ~lkvkWk~-----~~~~~te~~L~~~f~~yG~V~~v~i~ 202 (283)
.|-+||=+ .+..-+++.|+..|..||.|.+|.|+
T Consensus 156 ~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 156 GIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 47889988 33457899999999999999999884
No 200
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=57.96 E-value=12 Score=36.25 Aligned_cols=65 Identities=14% Similarity=0.270 Sum_probs=49.6
Q ss_pred ecCccccHHHHHHHhcccCCeeEEEEe-c------CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEeec
Q 023364 176 KFGEDYTAERLREIFSEFGKVEDVVIK-S------SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPL 240 (283)
Q Consensus 176 ~~~~~~te~~L~~~f~~yG~V~~v~i~-~------~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~~~ 240 (283)
......|.|+++.||+..|.|..+.+- + .-....|||-|.+...+.-|-. .+.-+.++.|.|.+.
T Consensus 14 nispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 14 NISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 345568999999999999999998772 1 2236799999999998887733 246666888888774
No 201
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.83 E-value=59 Score=34.52 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=5.9
Q ss_pred cCCeeEEEE
Q 023364 193 FGKVEDVVI 201 (283)
Q Consensus 193 yG~V~~v~i 201 (283)
-|.|.+|.+
T Consensus 457 s~kl~Dvr~ 465 (1118)
T KOG1029|consen 457 SGKLQDVRV 465 (1118)
T ss_pred hhhhhhhee
Confidence 466777666
No 202
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.51 E-value=13 Score=29.93 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=26.8
Q ss_pred ccccHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHH-HHHH
Q 023364 179 EDYTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAA-GAAT 224 (283)
Q Consensus 179 ~~~te~~L~~~f~~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A-~~A~ 224 (283)
.+.+...|.+.|+.|+++.-..+- .....|+|+|+|...-+. .+|+
T Consensus 27 ~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 27 VGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp E---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred eccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 357788999999999998754442 244689999999987554 4444
No 203
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=48.87 E-value=10 Score=38.65 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=42.6
Q ss_pred eecCccccHHHHHHHhc-ccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC
Q 023364 175 EKFGEDYTAERLREIFS-EFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL 231 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~-~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~ 231 (283)
...--.||.-.|..++. .-|.|+..+| ++-+.-|||.|.+.++|.+-..+++|..
T Consensus 450 ~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 450 DNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred ecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccc
Confidence 33334599999999999 5667888887 4556789999999999987777666554
No 204
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=47.91 E-value=5.3 Score=42.06 Aligned_cols=48 Identities=33% Similarity=0.366 Sum_probs=40.5
Q ss_pred cccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhh
Q 023364 180 DYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSV 227 (283)
Q Consensus 180 ~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~ 227 (283)
...+.+|...|+.||.|..|-+. .++-+|+|+|+|...+++.+||.-.
T Consensus 678 ~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 678 KMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred hhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 46788999999999998887662 3667999999999999999999753
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=46.86 E-value=15 Score=34.72 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=35.8
Q ss_pred ccHHHHH--HHhcccCCeeEEEEec-------CCCcceEEEEecCHHHHHHHHHh
Q 023364 181 YTAERLR--EIFSEFGKVEDVVIKS-------SKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 181 ~te~~L~--~~f~~yG~V~~v~i~~-------~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
-+++.|. +.|++||.|..|++-. ...-..+.|+|...++|..||..
T Consensus 90 ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~ 144 (327)
T KOG2068|consen 90 ADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDD 144 (327)
T ss_pred cchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHH
Confidence 5566666 5999999999999832 11245699999999999888875
No 206
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=46.09 E-value=73 Score=32.01 Aligned_cols=65 Identities=26% Similarity=0.283 Sum_probs=51.1
Q ss_pred eecCccccHHHHHHHhc-ccCCeeEEEEecC-C---CcceEEEEecCHHHHHHHHHh-----hcCCCCCCeEEee
Q 023364 175 EKFGEDYTAERLREIFS-EFGKVEDVVIKSS-K---KKGSALVVMATKSAAGAATGS-----VCGNLSNPLLVLP 239 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~-~yG~V~~v~i~~~-k---~~g~A~V~F~~~~~A~~A~~~-----~~g~~~~pl~v~~ 239 (283)
.......+...|-.||. -||-|.=|-|-.+ + .+|.|-|+|.+..+=.+||.+ ..+.+.+-+.|.|
T Consensus 376 Ggvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkP 450 (520)
T KOG0129|consen 376 GGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKP 450 (520)
T ss_pred cCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeecc
Confidence 55556699999999999 7999998888332 2 599999999999999999976 4566666555555
No 207
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.74 E-value=36 Score=31.44 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=25.1
Q ss_pred EEEEecCHHHHHHHHHhhcCCCCCCeEEeec
Q 023364 210 ALVVMATKSAAGAATGSVCGNLSNPLLVLPL 240 (283)
Q Consensus 210 A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~~ 240 (283)
|||+|.+..+|..|.+......++.+.+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeC
Confidence 7999999999999999866666666766654
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=37.82 E-value=1.4e+02 Score=21.44 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=36.1
Q ss_pred CccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC
Q 023364 178 GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN 230 (283)
Q Consensus 178 ~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~ 230 (283)
..+.+..+++.-+.+|+-.. |.. .+.|+ +|+|.+..+|+....++.|.
T Consensus 9 ~~~~~v~d~K~~Lr~y~~~~-I~~---d~tGf-YIvF~~~~Ea~rC~~~~~~~ 56 (66)
T PF11767_consen 9 VHGVTVEDFKKRLRKYRWDR-IRD---DRTGF-YIVFNDSKEAERCFRAEDGT 56 (66)
T ss_pred CCCccHHHHHHHHhcCCcce-EEe---cCCEE-EEEECChHHHHHHHHhcCCC
Confidence 34688999999999998653 222 23454 78999999999998876654
No 209
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=36.02 E-value=51 Score=34.48 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=38.8
Q ss_pred EEEEeeecCccccHHHHHHHhcccCCee-EEEEecCCCcceEEEEecCHHHHHHHHHhhcC
Q 023364 170 LKVSWEKFGEDYTAERLREIFSEFGKVE-DVVIKSSKKKGSALVVMATKSAAGAATGSVCG 229 (283)
Q Consensus 170 lkvkWk~~~~~~te~~L~~~f~~yG~V~-~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g 229 (283)
|.|+.....-.....+|+.+|+-.-.-+ .|.|+ +..-|-|||.|+|-++|..|+....+
T Consensus 3 VIIRLqnLP~tAga~DIR~FFSGL~IPdGgVHII-GGe~GeaFI~FsTDeDARlaM~kdr~ 62 (944)
T KOG4307|consen 3 VIIRLQNLPMTAGASDIRTFFSGLKIPDGGVHII-GGEEGEAFIGFSTDEDARLAMTKDRL 62 (944)
T ss_pred eEEEecCCcccccchHHHHhhcccccCCCceEEe-cccccceEEEecccchhhhhhhhccc
Confidence 3444444333344578999998653222 25554 45689999999999999999865433
No 210
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=34.56 E-value=75 Score=33.34 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=43.0
Q ss_pred cCccccHHHHHHHhcccCCeeE-EEEe---cCCCcceEEEEecCHHHHHHHHHhhcCC
Q 023364 177 FGEDYTAERLREIFSEFGKVED-VVIK---SSKKKGSALVVMATKSAAGAATGSVCGN 230 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~-v~i~---~~k~~g~A~V~F~~~~~A~~A~~~~~g~ 230 (283)
.....+-++|.++|+-|-.+-+ |.++ ++...|-|.|-|++.++|..|..+..+.
T Consensus 875 ~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~ 932 (944)
T KOG4307|consen 875 FPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQ 932 (944)
T ss_pred CCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccC
Confidence 4456888999999999987766 4443 2667899999999999999999875443
No 211
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.67 E-value=2.5e+02 Score=30.15 Aligned_cols=8 Identities=13% Similarity=0.493 Sum_probs=3.1
Q ss_pred HhccCchh
Q 023364 62 EILKDEKA 69 (283)
Q Consensus 62 ~vL~d~~~ 69 (283)
.+|.+...
T Consensus 334 q~leeqqq 341 (1118)
T KOG1029|consen 334 QALEEQQQ 341 (1118)
T ss_pred HHHHHHHH
Confidence 33443333
No 212
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=32.56 E-value=49 Score=28.28 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.1
Q ss_pred CccccHHHHHHHhcccCCeeE
Q 023364 178 GEDYTAERLREIFSEFGKVED 198 (283)
Q Consensus 178 ~~~~te~~L~~~f~~yG~V~~ 198 (283)
+..|+-+.|..++..||+|--
T Consensus 93 ~~~~t~e~~~~LL~~yGPLwv 113 (166)
T PF12385_consen 93 NASYTAEGLANLLREYGPLWV 113 (166)
T ss_pred ccccCHHHHHHHHHHcCCeEE
Confidence 356999999999999999853
No 213
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=32.37 E-value=66 Score=28.19 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhc
Q 023364 22 KLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEIL 64 (283)
Q Consensus 22 ~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL 64 (283)
+|+.+||..|+.++..+|- +|+ ..-..|-.||+.+
T Consensus 3 ~ASfeEIq~Arn~ll~~y~-----gd~---~~~~~IEaAYD~I 37 (194)
T PF11833_consen 3 DASFEEIQAARNRLLAQYA-----GDE---KSREAIEAAYDAI 37 (194)
T ss_pred CCCHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHH
Confidence 3899999999999999983 232 2344566666543
No 214
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=28.71 E-value=1.2e+02 Score=30.59 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=35.0
Q ss_pred cCccccHHHHHHHhcccCCeeEEEE-ec-----CCCcc---eEEEEecCHHHHHHHHHh
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVI-KS-----SKKKG---SALVVMATKSAAGAATGS 226 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i-~~-----~k~~g---~A~V~F~~~~~A~~A~~~ 226 (283)
...++||+.|...|..||.|.-=.- +. --.+| |+|+.|++..+...=+.+
T Consensus 267 lp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 267 LPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred CCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 4457999999999999998743221 01 11355 999999998876555443
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.60 E-value=1.5e+02 Score=30.41 Aligned_cols=34 Identities=18% Similarity=-0.016 Sum_probs=23.5
Q ss_pred cceEEEEecCHHHHHHHHHhh----cCCCCCCeEEeec
Q 023364 207 KGSALVVMATKSAAGAATGSV----CGNLSNPLLVLPL 240 (283)
Q Consensus 207 ~g~A~V~F~~~~~A~~A~~~~----~g~~~~pl~v~~~ 240 (283)
+=||+|+|.++..|......+ ++...+-|-+-++
T Consensus 268 YYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 268 YYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred eEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 458999999999998877664 4444544444443
No 216
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=25.31 E-value=1.4e+02 Score=21.31 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=29.5
Q ss_pred HHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh
Q 023364 183 AERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 183 e~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
-..+.+++..+| +....|....--++.|+.+.+.+.+..+...
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~ 78 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEA 78 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHH
Confidence 355778889999 6566662232367788888788887777654
No 217
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=25.27 E-value=1.7e+02 Score=27.54 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=47.3
Q ss_pred CccccHHHHHHHhcccCCeeEEEEec-----------CCCcceEEEEecCHHHHHHHHHh--------hcCCCCCCeEEe
Q 023364 178 GEDYTAERLREIFSEFGKVEDVVIKS-----------SKKKGSALVVMATKSAAGAATGS--------VCGNLSNPLLVL 238 (283)
Q Consensus 178 ~~~~te~~L~~~f~~yG~V~~v~i~~-----------~k~~g~A~V~F~~~~~A~~A~~~--------~~g~~~~pl~v~ 238 (283)
+..++=..+..-|.+||+|+.|.+.. ++...+..+.|-+.+.|..=..+ ...+.+..|.+.
T Consensus 24 ~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~L~ls 103 (309)
T PF10567_consen 24 NNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSESLTLS 103 (309)
T ss_pred cccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcceeEE
Confidence 34577778889999999999999953 23468999999999998543322 355567778888
Q ss_pred ec
Q 023364 239 PL 240 (283)
Q Consensus 239 ~~ 240 (283)
++
T Consensus 104 FV 105 (309)
T PF10567_consen 104 FV 105 (309)
T ss_pred EE
Confidence 74
No 218
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=24.95 E-value=20 Score=38.16 Aligned_cols=49 Identities=29% Similarity=0.366 Sum_probs=40.2
Q ss_pred CccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh
Q 023364 178 GEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 178 ~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
...+++..|+..|+.||.|..|.|.. ...-.+|||.|-+...+-.|...
T Consensus 381 ~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e 432 (975)
T KOG0112|consen 381 DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFE 432 (975)
T ss_pred ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchh
Confidence 34588999999999999999999953 23466899999999988777765
No 219
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=23.99 E-value=9e+02 Score=26.18 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023364 26 KEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIKREKQQRQSQQDGKRRKMMSDLEERE 105 (283)
Q Consensus 26 ~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~r~~~~~~~r~~~~~~l~~re 105 (283)
+-.-++|-.+......-+.. -.+..+...+|+++.++ +-+|..-+...+...+...+.+.--.-++++-++...+.
T Consensus 899 d~~~~~~e~~~~~l~sk~~q-~~~e~er~rk~qE~~E~---ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~q 974 (1259)
T KOG0163|consen 899 DVAVKNYEKLVKRLDSKEQQ-QIEELERLRKIQELAEA---ERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQ 974 (1259)
T ss_pred HHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HH----hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q 023364 106 RA----AFAPDPAVKARQEEEKIARQLKEEIERIRAMHENKRTPA 146 (283)
Q Consensus 106 ~~----~~~~~~~~~~~~~~~~~~~~l~ee~~r~r~~~~~~~~~~ 146 (283)
++ ...+-...-+++.++...++-.+|-+|+-.+.+.++..+
T Consensus 975 ee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer~D~~la~RlA~s 1019 (1259)
T KOG0163|consen 975 EEEERRLALELQEQLAKEAEEEAKRQNQLEQERRDHELALRLANS 1019 (1259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
No 220
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=21.89 E-value=84 Score=30.65 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=36.3
Q ss_pred cCccccHHHHHHHhcccCCee-E--EEEe-c--CCCcceEEEEecCHHHHHHHHHh
Q 023364 177 FGEDYTAERLREIFSEFGKVE-D--VVIK-S--SKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~-~--v~i~-~--~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
....-+.++|.++|..|-.-. - |.|. + ++..|-|||.|.+.++|..|...
T Consensus 288 LPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk 343 (508)
T KOG1365|consen 288 LPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQK 343 (508)
T ss_pred CChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHH
Confidence 333467888888888887322 1 4442 3 77899999999999999888754
No 221
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.75 E-value=5.7e+02 Score=22.31 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=14.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 023364 84 QQRQSQQDGKRRKMMSDLEERER 106 (283)
Q Consensus 84 ~~r~~~~~~~r~~~~~~l~~re~ 106 (283)
..++..+..-|++|-+++.+.-.
T Consensus 79 ~~rqEa~eaAR~RmQEE~dakA~ 101 (190)
T PF06936_consen 79 VRRQEAMEAARRRMQEELDAKAE 101 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777776654
No 222
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.26 E-value=1.9e+02 Score=29.02 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=41.9
Q ss_pred HHHHHhc----ccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEeecCC
Q 023364 185 RLREIFS----EFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQP 242 (283)
Q Consensus 185 ~L~~~f~----~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~~~~ 242 (283)
+|..+|. .+|.|..+.+.- .......++.|.+.++|..|+.......-.|..++.+.+
T Consensus 205 dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~p~~~el~d~ 269 (499)
T PRK11230 205 DLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGIIPGGLEMMDN 269 (499)
T ss_pred chHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeeCH
Confidence 4666664 789999998842 345677889999999999999875444445666666543
Done!