Query 023364
Match_columns 283
No_of_seqs 315 out of 2216
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 05:33:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.8 3.4E-20 1.2E-24 138.1 6.0 70 3-77 4-73 (79)
2 2yua_A Williams-beuren syndrom 99.8 5.4E-20 1.9E-24 143.0 6.4 71 3-78 14-84 (99)
3 1hdj_A Human HSP40, HDJ-1; mol 99.8 6.6E-20 2.3E-24 136.0 6.5 68 5-78 2-69 (77)
4 2ctq_A DNAJ homolog subfamily 99.8 9.3E-20 3.2E-24 144.8 7.4 70 4-78 18-87 (112)
5 2ctw_A DNAJ homolog subfamily 99.8 2.4E-19 8.1E-24 141.8 8.1 75 2-81 13-87 (109)
6 1wjz_A 1700030A21RIK protein; 99.8 8.6E-20 2.9E-24 140.2 5.3 71 3-78 13-89 (94)
7 2cug_A Mkiaa0962 protein; DNAJ 99.8 1.9E-19 6.6E-24 137.0 6.9 70 3-78 14-83 (88)
8 2och_A Hypothetical protein DN 99.8 2.4E-19 8E-24 131.7 6.2 67 3-77 5-71 (73)
9 2ctp_A DNAJ homolog subfamily 99.8 1.7E-19 5.8E-24 134.1 5.3 68 4-77 5-72 (78)
10 2ctr_A DNAJ homolog subfamily 99.8 3.3E-19 1.1E-23 135.6 7.0 70 3-78 4-73 (88)
11 2ej7_A HCG3 gene; HCG3 protein 99.8 2.3E-19 8E-24 134.5 5.9 69 4-77 7-76 (82)
12 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.7E-19 5.8E-24 141.1 2.9 69 5-78 2-70 (103)
13 2o37_A Protein SIS1; HSP40, J- 99.8 1.1E-18 3.6E-23 133.9 7.2 70 3-80 5-74 (92)
14 2lgw_A DNAJ homolog subfamily 99.8 1.1E-18 3.7E-23 135.8 7.2 68 6-78 2-70 (99)
15 2dmx_A DNAJ homolog subfamily 99.7 8.9E-19 3E-23 134.2 5.8 69 4-77 7-76 (92)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 1.9E-18 6.6E-23 136.4 5.6 70 4-78 13-86 (109)
17 3hho_A CO-chaperone protein HS 99.7 3.1E-18 1.1E-22 146.1 6.4 98 4-106 2-104 (174)
18 2l6l_A DNAJ homolog subfamily 99.7 1.1E-17 3.7E-22 139.9 8.3 70 4-78 8-83 (155)
19 3apq_A DNAJ homolog subfamily 99.7 9.1E-18 3.1E-22 145.4 6.0 68 6-78 2-69 (210)
20 1fpo_A HSC20, chaperone protei 99.7 3E-18 1E-22 145.8 2.9 96 6-106 1-101 (171)
21 2ys8_A RAB-related GTP-binding 99.7 9E-18 3.1E-22 128.3 5.0 63 4-72 25-87 (90)
22 3bvo_A CO-chaperone protein HS 99.7 1.3E-16 4.5E-21 139.6 7.4 71 5-78 42-117 (207)
23 2d9o_A DNAJ (HSP40) homolog, s 99.6 2.2E-15 7.7E-20 117.1 11.9 76 166-242 9-89 (100)
24 3uo3_A J-type CO-chaperone JAC 99.6 5.3E-16 1.8E-20 133.0 8.5 97 4-107 9-114 (181)
25 1n4c_A Auxilin; four helix bun 99.6 9.2E-17 3.1E-21 137.5 3.4 66 3-73 114-182 (182)
26 1iur_A KIAA0730 protein; DNAJ 99.6 1.2E-16 3.9E-21 121.8 3.2 62 4-70 14-76 (88)
27 2qwo_B Putative tyrosine-prote 99.6 1.6E-16 5.5E-21 121.7 3.6 56 6-66 33-91 (92)
28 3lz8_A Putative chaperone DNAJ 99.6 4.8E-17 1.7E-21 151.6 0.0 68 5-78 27-94 (329)
29 1gh6_A Large T antigen; tumor 99.6 5.2E-17 1.8E-21 129.4 -1.9 63 5-76 7-71 (114)
30 3ag7_A Putative uncharacterize 99.6 4.9E-16 1.7E-20 122.2 3.1 60 3-68 38-104 (106)
31 2pf4_E Small T antigen; PP2A, 99.6 1.5E-16 5.2E-21 135.3 -1.7 64 6-78 11-76 (174)
32 1faf_A Large T antigen; J doma 99.5 1.6E-15 5.6E-20 113.0 2.3 61 6-73 11-71 (79)
33 2guz_A Mitochondrial import in 99.5 5E-15 1.7E-19 108.2 2.9 57 5-70 13-70 (71)
34 3apo_A DNAJ homolog subfamily 99.5 3.7E-15 1.3E-19 152.0 -0.9 71 4-79 19-89 (780)
35 4fxv_A ELAV-like protein 1; RN 99.2 6.4E-11 2.2E-15 91.1 7.8 68 175-242 25-98 (99)
36 3r27_A HnRNP L, heterogeneous 99.2 1.1E-10 3.7E-15 90.6 8.6 71 168-242 22-96 (100)
37 1wex_A Hypothetical protein (r 99.1 3.6E-10 1.2E-14 88.0 10.7 71 168-242 16-90 (104)
38 1sjr_A Polypyrimidine tract-bi 99.1 2.1E-10 7.1E-15 96.7 9.9 76 168-243 45-124 (164)
39 2cq1_A PTB-like protein L; RRM 99.1 3E-10 1E-14 88.0 10.0 71 168-242 16-90 (101)
40 1sjq_A Polypyrimidine tract-bi 99.1 1.2E-10 4.1E-15 91.2 7.7 70 169-242 18-91 (105)
41 2dgo_A Cytotoxic granule-assoc 99.1 8.6E-10 3E-14 86.1 12.4 73 171-243 17-95 (115)
42 2cq2_A Hypothetical protein LO 99.1 2.3E-10 7.9E-15 90.8 8.2 73 168-242 26-105 (114)
43 2dnz_A Probable RNA-binding pr 99.1 1.1E-09 3.7E-14 82.4 11.7 72 169-242 7-84 (95)
44 2dgs_A DAZ-associated protein 99.1 1.4E-09 4.9E-14 82.6 11.9 73 168-242 11-88 (99)
45 2hvz_A Splicing factor, argini 99.1 1.6E-09 5.4E-14 82.7 12.1 68 175-243 6-75 (101)
46 2lxi_A RNA-binding protein 10; 99.1 1.3E-10 4.4E-15 87.9 5.8 68 175-242 7-82 (91)
47 3zzy_A Polypyrimidine tract-bi 99.1 2.9E-10 1E-14 92.2 8.3 75 168-243 27-106 (130)
48 1x4d_A Matrin 3; structural ge 99.1 2.6E-10 9E-15 88.6 7.6 70 169-242 17-91 (102)
49 1whw_A Hypothetical protein ri 99.1 9.7E-10 3.3E-14 83.4 10.6 73 168-242 9-87 (99)
50 2ad9_A Polypyrimidine tract-bi 99.1 2.9E-10 9.9E-15 90.9 7.8 71 168-242 32-106 (119)
51 2fy1_A RNA-binding motif prote 99.1 1.8E-09 6.2E-14 85.1 12.0 74 168-243 8-86 (116)
52 2lkz_A RNA-binding protein 5; 99.1 3.3E-10 1.1E-14 86.8 7.5 74 166-241 8-93 (95)
53 2cqg_A TDP-43, TAR DNA-binding 99.1 7.7E-10 2.6E-14 84.7 9.4 72 169-242 17-92 (103)
54 2dhg_A TRNA selenocysteine ass 99.0 1E-09 3.6E-14 84.0 9.8 68 175-242 15-89 (104)
55 1why_A Hypothetical protein ri 99.0 8.7E-10 3E-14 83.6 9.3 71 168-242 18-92 (97)
56 3p5t_L Cleavage and polyadenyl 99.0 2.7E-10 9.3E-15 85.4 6.3 68 175-242 7-82 (90)
57 2e5i_A Heterogeneous nuclear r 99.0 1.5E-09 5E-14 87.4 10.9 75 167-243 23-102 (124)
58 1whx_A Hypothetical protein ri 99.0 9.2E-10 3.2E-14 86.1 9.5 69 172-242 13-83 (111)
59 2d9p_A Polyadenylate-binding p 99.0 1.5E-09 5.2E-14 83.0 10.6 72 169-242 17-92 (103)
60 4f25_A Polyadenylate-binding p 99.0 4.5E-10 1.5E-14 88.3 7.7 68 175-242 11-82 (115)
61 2dnq_A RNA-binding protein 4B; 99.0 2.5E-09 8.5E-14 79.9 11.4 69 168-242 9-79 (90)
62 3mdf_A Peptidyl-prolyl CIS-tra 99.0 6.1E-10 2.1E-14 82.0 7.8 71 168-240 8-84 (85)
63 2dnh_A Bruno-like 5, RNA bindi 99.0 1.6E-09 5.4E-14 83.1 10.4 73 168-242 16-96 (105)
64 1x5s_A Cold-inducible RNA-bind 99.0 1.4E-09 4.7E-14 83.0 9.9 73 168-242 13-91 (102)
65 2cq3_A RNA-binding protein 9; 99.0 2.7E-09 9.4E-14 81.6 11.6 73 168-242 16-92 (103)
66 4a8x_A RNA-binding protein wit 99.0 5.4E-10 1.9E-14 82.7 7.3 68 175-242 10-84 (88)
67 2cq0_A Eukaryotic translation 99.0 1.2E-09 4.2E-14 83.5 9.5 71 172-242 18-94 (103)
68 2cqi_A Nucleolysin TIAR; RNA r 99.0 1.9E-09 6.4E-14 82.5 10.4 72 169-242 17-92 (103)
69 2cpf_A RNA binding motif prote 99.0 7.2E-10 2.5E-14 84.0 7.9 72 169-242 7-87 (98)
70 2a3j_A U1 small nuclear ribonu 99.0 1E-09 3.5E-14 88.5 9.1 73 168-242 30-109 (127)
71 2do4_A Squamous cell carcinoma 99.0 9E-10 3.1E-14 83.9 8.3 73 168-242 18-95 (100)
72 3lqv_A PRE-mRNA branch site pr 99.0 1.3E-09 4.4E-14 85.1 9.4 73 168-242 9-84 (115)
73 3bs9_A Nucleolysin TIA-1 isofo 99.0 8.4E-10 2.9E-14 81.6 7.9 71 172-242 9-85 (87)
74 2dgp_A Bruno-like 4, RNA bindi 99.0 3.3E-09 1.1E-13 81.5 11.5 72 169-242 15-95 (106)
75 1x4f_A Matrin 3; structural ge 99.0 5.5E-10 1.9E-14 88.3 7.2 71 168-242 26-101 (112)
76 3md1_A Nuclear and cytoplasmic 99.0 1.1E-09 3.7E-14 80.3 8.4 68 175-242 7-80 (83)
77 1s79_A Lupus LA protein; RRM, 99.0 1.2E-09 4.2E-14 84.6 9.0 67 175-241 17-87 (103)
78 1x4a_A Splicing factor, argini 99.0 1.4E-09 4.9E-14 84.1 9.4 73 168-242 23-98 (109)
79 2dnm_A SRP46 splicing factor; 99.0 2.2E-09 7.5E-14 82.1 10.3 73 168-242 14-92 (103)
80 3s8s_A Histone-lysine N-methyl 99.0 9.1E-10 3.1E-14 86.3 8.1 72 169-242 8-85 (110)
81 2cqb_A Peptidyl-prolyl CIS-tra 99.0 1.5E-09 5E-14 82.9 9.0 73 168-242 13-91 (102)
82 1x4c_A Splicing factor, argini 99.0 2.3E-09 7.8E-14 83.1 10.2 69 171-242 17-92 (108)
83 1x4g_A Nucleolysin TIAR; struc 99.0 1.6E-09 5.6E-14 83.9 9.3 70 169-242 27-98 (109)
84 2cph_A RNA binding motif prote 99.0 3.7E-09 1.3E-13 81.2 11.1 72 169-242 17-96 (107)
85 2dis_A Unnamed protein product 99.0 3.2E-09 1.1E-13 81.9 10.7 69 175-243 14-92 (109)
86 1x5t_A Splicing factor 3B subu 99.0 1.5E-09 5E-14 81.9 8.5 72 169-242 7-85 (96)
87 2do0_A HnRNP M, heterogeneous 99.0 2.6E-09 9E-14 83.1 10.2 73 168-242 16-93 (114)
88 1x5o_A RNA binding motif, sing 99.0 2.2E-09 7.4E-14 83.7 9.6 69 174-242 30-111 (114)
89 3ucg_A Polyadenylate-binding p 99.0 1.7E-09 6E-14 80.2 8.5 71 169-242 8-84 (89)
90 2dgv_A HnRNP M, heterogeneous 99.0 2.2E-09 7.4E-14 80.3 8.9 73 168-242 9-85 (92)
91 1x5u_A Splicing factor 3B subu 99.0 2.4E-09 8.1E-14 82.1 9.2 73 168-242 16-94 (105)
92 2kvi_A Nuclear polyadenylated 99.0 2.6E-09 8.8E-14 81.0 9.2 67 172-242 13-82 (96)
93 2cpj_A Non-POU domain-containi 99.0 3E-09 1E-13 80.9 9.6 71 168-242 16-88 (99)
94 2x1f_A MRNA 3'-END-processing 99.0 1.8E-09 6.3E-14 81.6 8.3 68 175-242 8-81 (96)
95 1x5p_A Negative elongation fac 99.0 1.3E-09 4.5E-14 82.7 7.5 69 168-242 16-86 (97)
96 2e5j_A Methenyltetrahydrofolat 99.0 1.5E-09 5.2E-14 82.4 7.8 72 168-242 20-93 (97)
97 2e5h_A Zinc finger CCHC-type a 99.0 2.3E-09 8E-14 80.4 8.8 72 167-240 16-93 (94)
98 2cqh_A IGF-II mRNA-binding pro 99.0 1.1E-09 3.7E-14 82.3 6.9 69 169-242 10-82 (93)
99 2dgu_A Heterogeneous nuclear r 99.0 3.4E-09 1.2E-13 81.3 9.8 70 168-243 12-83 (103)
100 2div_A TRNA selenocysteine ass 99.0 2.6E-09 9E-14 81.0 9.1 73 168-242 10-93 (99)
101 2dgx_A KIAA0430 protein; RRM d 99.0 2.8E-09 9.5E-14 80.9 9.1 72 171-242 11-89 (96)
102 2cqd_A RNA-binding region cont 99.0 4.1E-09 1.4E-13 82.4 10.3 73 168-242 18-95 (116)
103 1x4h_A RNA-binding protein 28; 99.0 3.1E-09 1E-13 82.2 9.4 72 169-242 17-100 (111)
104 2cpz_A CUG triplet repeat RNA- 99.0 2.1E-09 7.2E-14 84.0 8.5 72 169-242 27-104 (115)
105 1p27_B RNA-binding protein 8A; 99.0 3.2E-09 1.1E-13 81.6 9.3 72 169-242 25-102 (106)
106 2jrs_A RNA-binding protein 39; 99.0 4.9E-09 1.7E-13 81.6 10.5 73 168-242 27-105 (108)
107 3ns6_A Eukaryotic translation 98.9 9.7E-10 3.3E-14 84.2 6.2 63 180-242 23-92 (100)
108 2wbr_A GW182, gawky, LD47780P; 98.9 9E-10 3.1E-14 83.5 5.9 65 175-241 13-79 (89)
109 2dit_A HIV TAT specific factor 98.9 2E-09 6.9E-14 84.1 8.2 77 166-242 14-101 (112)
110 1wf0_A TDP-43, TAR DNA-binding 98.9 1E-09 3.6E-14 81.7 6.1 71 169-242 7-77 (88)
111 2cpx_A Hypothetical protein FL 98.9 2.8E-09 9.4E-14 83.1 8.8 73 168-242 26-104 (115)
112 2mss_A Protein (musashi1); RNA 98.9 2.2E-09 7.6E-14 77.3 7.5 65 175-239 5-74 (75)
113 2la4_A Nuclear and cytoplasmic 98.9 1.5E-09 5E-14 82.8 6.8 69 172-242 30-100 (101)
114 2err_A Ataxin-2-binding protei 98.9 1.7E-09 5.9E-14 84.1 7.3 73 168-242 30-106 (109)
115 2cqc_A Arginine/serine-rich sp 98.9 2.3E-09 7.7E-14 80.5 7.7 73 167-241 15-93 (95)
116 1oo0_B CG8781-PA, drosophila Y 98.9 2.6E-09 8.7E-14 82.7 8.2 72 169-242 28-105 (110)
117 2jvr_A Nucleolar protein 3; RN 98.9 1.6E-09 5.5E-14 85.3 7.0 72 171-242 30-104 (111)
118 2krb_A Eukaryotic translation 98.9 2.1E-09 7.2E-14 78.8 7.2 56 182-237 20-80 (81)
119 2ywk_A Putative RNA-binding pr 98.9 2.4E-09 8.3E-14 80.5 7.6 72 168-241 17-93 (95)
120 1p1t_A Cleavage stimulation fa 98.9 2.5E-09 8.5E-14 81.8 7.7 72 169-242 10-87 (104)
121 2ytc_A PRE-mRNA-splicing facto 98.9 2.2E-09 7.6E-14 79.0 7.0 68 169-240 14-84 (85)
122 2cqp_A RNA-binding protein 12; 98.9 2.3E-09 7.7E-14 81.2 7.2 73 168-242 16-94 (98)
123 2kt5_A RNA and export factor-b 98.9 6.3E-09 2.2E-13 82.4 10.1 73 168-242 36-113 (124)
124 2ki2_A SS-DNA binding protein 98.9 1.9E-09 6.6E-14 80.3 6.6 67 175-242 7-79 (90)
125 3d2w_A TAR DNA-binding protein 98.9 2.1E-09 7.3E-14 80.8 6.8 71 169-242 13-83 (89)
126 1x4b_A Heterogeneous nuclear r 98.9 4.6E-09 1.6E-13 82.1 9.0 71 172-242 30-105 (116)
127 2pe8_A Splicing factor 45; RRM 98.9 3.7E-09 1.3E-13 82.4 8.3 75 168-242 9-93 (105)
128 3ex7_B RNA-binding protein 8A; 98.9 4.4E-09 1.5E-13 83.4 8.9 72 169-242 24-101 (126)
129 2kxn_B Transformer-2 protein h 98.9 4.2E-09 1.4E-13 84.7 8.8 73 168-242 47-125 (129)
130 2i2y_A Fusion protein consists 98.9 3.6E-09 1.2E-13 86.5 8.6 72 168-242 74-147 (150)
131 2la6_A RNA-binding protein FUS 98.9 7.7E-09 2.6E-13 78.6 9.8 70 169-240 15-98 (99)
132 2bz2_A Negative elongation fac 98.9 2.6E-09 8.9E-14 85.1 7.4 69 168-242 40-110 (121)
133 2dnp_A RNA-binding protein 14; 98.9 4.3E-09 1.5E-13 78.6 8.1 69 168-242 10-80 (90)
134 2dgt_A RNA-binding protein 30; 98.9 9.4E-09 3.2E-13 77.0 10.0 68 169-242 12-81 (92)
135 2e44_A Insulin-like growth fac 98.9 9.1E-09 3.1E-13 77.5 9.9 69 174-242 20-91 (96)
136 2jwn_A Embryonic polyadenylate 98.9 6E-09 2.1E-13 82.3 9.3 72 168-242 37-114 (124)
137 1nu4_A U1A RNA binding domain; 98.9 1.8E-09 6.2E-14 81.5 6.0 73 168-242 9-88 (97)
138 2nlw_A Eukaryotic translation 98.9 2.8E-09 9.5E-14 82.3 7.1 61 182-242 34-99 (105)
139 2cpe_A RNA-binding protein EWS 98.9 6.7E-09 2.3E-13 80.7 9.4 73 168-242 16-102 (113)
140 2xnq_A Nuclear polyadenylated 98.9 5.3E-09 1.8E-13 79.7 8.5 70 167-242 22-94 (97)
141 2jvo_A Nucleolar protein 3; nu 98.9 3.7E-09 1.3E-13 82.3 7.7 68 169-242 33-102 (108)
142 1uaw_A Mouse-musashi-1; RNP-ty 98.9 3E-09 1E-13 76.7 6.7 66 175-240 6-76 (77)
143 2lea_A Serine/arginine-rich sp 98.9 5.9E-09 2E-13 84.4 9.0 73 168-242 48-126 (135)
144 2kn4_A Immunoglobulin G-bindin 98.9 6.8E-09 2.3E-13 85.3 9.1 72 171-242 72-149 (158)
145 1wf1_A RNA-binding protein RAL 98.9 5.4E-09 1.8E-13 81.1 7.9 69 168-242 28-99 (110)
146 1h2v_Z 20 kDa nuclear CAP bind 98.9 6.2E-09 2.1E-13 85.7 8.7 74 168-243 40-119 (156)
147 2rs2_A Musashi-1, RNA-binding 98.9 4.7E-09 1.6E-13 81.7 7.5 73 168-242 26-103 (109)
148 1fjc_A Nucleolin RBD2, protein 98.9 4.8E-09 1.7E-13 79.1 7.3 72 168-242 17-90 (96)
149 2khc_A Testis-specific RNP-typ 98.9 6.5E-09 2.2E-13 81.4 8.3 70 171-240 42-117 (118)
150 2cpi_A CCR4-NOT transcription 98.9 3.1E-09 1.1E-13 82.8 6.4 68 175-242 21-100 (111)
151 2y4t_A DNAJ homolog subfamily 98.9 1.4E-09 4.8E-14 100.6 4.8 65 6-75 382-449 (450)
152 1u6f_A Tcubp1, RNA-binding pro 98.8 9.9E-09 3.4E-13 82.6 9.2 73 168-242 43-121 (139)
153 1wi8_A EIF-4B, eukaryotic tran 98.8 2.4E-08 8.2E-13 76.5 10.9 70 171-242 17-93 (104)
154 1iqt_A AUF1, heterogeneous nuc 98.8 2.9E-09 9.9E-14 76.5 5.3 64 176-239 6-74 (75)
155 3ulh_A THO complex subunit 4; 98.8 6.8E-09 2.3E-13 79.8 7.6 72 168-241 30-106 (107)
156 2dh8_A DAZ-associated protein 98.8 3.8E-09 1.3E-13 81.1 5.8 72 169-242 18-94 (105)
157 2dng_A Eukaryotic translation 98.8 2.6E-08 8.9E-13 76.1 10.4 69 172-242 18-92 (103)
158 2qfj_A FBP-interacting repress 98.8 1.5E-08 5.2E-13 86.3 10.1 68 175-242 131-204 (216)
159 2cq4_A RNA binding motif prote 98.8 6E-09 2.1E-13 81.2 6.6 72 168-242 26-103 (114)
160 3s7r_A Heterogeneous nuclear r 98.8 9.4E-09 3.2E-13 76.0 7.3 70 168-239 12-86 (87)
161 2fc9_A NCL protein; structure 98.8 6.5E-09 2.2E-13 79.2 6.6 73 168-242 16-90 (101)
162 1x4e_A RNA binding motif, sing 98.8 6.5E-09 2.2E-13 76.6 6.3 64 175-238 11-80 (85)
163 2cpd_A Apobec-1 stimulating pr 98.8 1.9E-08 6.3E-13 76.4 9.0 69 168-242 16-88 (99)
164 1rk8_A CG8781-PA, CG8781-PA pr 98.8 9E-09 3.1E-13 85.8 7.6 72 169-242 74-151 (165)
165 2j76_E EIF-4B, EIF4B, eukaryot 98.8 8.1E-09 2.8E-13 78.9 6.6 71 168-242 20-97 (100)
166 1fj7_A Nucleolin RBD1, protein 98.8 4.5E-09 1.5E-13 80.1 5.1 72 171-242 19-94 (101)
167 1wg5_A Heterogeneous nuclear r 98.8 2.9E-08 9.9E-13 76.4 9.8 72 171-242 17-93 (104)
168 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.8 1.4E-08 4.8E-13 81.4 8.2 70 168-239 64-139 (140)
169 3beg_B Splicing factor, argini 98.8 3E-08 1E-12 77.8 9.7 66 171-239 18-85 (115)
170 3v4m_A Splicing factor U2AF 65 98.8 6.3E-09 2.2E-13 80.9 5.7 61 182-242 28-96 (105)
171 3s6e_A RNA-binding protein 39; 98.8 9.3E-09 3.2E-13 81.4 6.1 61 182-242 30-92 (114)
172 2xs2_A Deleted in azoospermia- 98.8 5E-09 1.7E-13 80.0 4.3 68 175-242 15-85 (102)
173 2f3j_A RNA and export factor b 98.8 2.3E-08 8E-13 84.7 8.9 72 171-242 90-166 (177)
174 3n9u_C Cleavage and polyadenyl 98.8 1.3E-08 4.5E-13 84.6 7.2 72 171-242 57-136 (156)
175 3egn_A RNA-binding protein 40; 98.8 1.6E-08 5.6E-13 81.9 7.6 72 169-242 47-129 (143)
176 2ek1_A RNA-binding protein 12; 98.8 8.9E-09 3E-13 77.3 5.5 71 169-241 17-93 (95)
177 2m2b_A RNA-binding protein 10; 98.7 2E-08 6.7E-13 80.5 7.6 67 175-242 29-107 (131)
178 1wel_A RNA-binding protein 12; 98.7 9.6E-09 3.3E-13 81.5 5.6 72 171-242 27-103 (124)
179 3nmr_A Cugbp ELAV-like family 98.7 3.7E-08 1.3E-12 80.9 9.4 70 169-240 97-174 (175)
180 2cpy_A RNA-binding protein 12; 98.7 1E-08 3.5E-13 80.2 5.5 71 172-242 18-93 (114)
181 3md3_A Nuclear and cytoplasmic 98.7 4.3E-08 1.5E-12 79.6 9.4 68 175-242 6-78 (166)
182 2dgw_A Probable RNA-binding pr 98.7 3.5E-08 1.2E-12 73.6 8.0 69 172-242 13-86 (91)
183 3sde_A Paraspeckle component 1 98.7 3.4E-08 1.2E-12 87.9 9.3 66 177-242 104-178 (261)
184 2cjk_A Nuclear polyadenylated 98.7 4.2E-08 1.4E-12 80.2 9.0 68 175-242 93-165 (167)
185 3tyt_A Heterogeneous nuclear r 98.7 2.8E-08 9.7E-13 85.9 8.4 71 169-242 6-79 (205)
186 1jmt_A Splicing factor U2AF 35 98.7 1.5E-08 5E-13 78.7 5.9 57 184-240 41-103 (104)
187 4f02_A Polyadenylate-binding p 98.7 2.2E-08 7.4E-13 86.4 7.6 68 175-242 109-180 (213)
188 1wez_A HnRNP H', FTP-3, hetero 98.7 3.2E-08 1.1E-12 76.2 7.8 72 168-242 16-91 (102)
189 3pgw_S U1-70K; protein-RNA com 98.7 4.6E-08 1.6E-12 94.1 10.7 72 169-242 104-181 (437)
190 2dnl_A Cytoplasmic polyadenyla 98.7 1.5E-08 5.2E-13 79.2 5.9 68 168-238 9-83 (114)
191 3md3_A Nuclear and cytoplasmic 98.7 3.3E-08 1.1E-12 80.3 8.2 67 175-241 93-165 (166)
192 1l3k_A Heterogeneous nuclear r 98.7 5E-08 1.7E-12 81.8 9.2 74 167-242 13-91 (196)
193 1fxl_A Paraneoplastic encephal 98.7 4.4E-08 1.5E-12 79.7 8.4 68 175-242 8-81 (167)
194 2e5g_A U6 snRNA-specific termi 98.7 6.2E-08 2.1E-12 72.8 8.6 70 171-242 10-81 (94)
195 2lmi_A GRSF-1, G-rich sequence 98.7 3.2E-08 1.1E-12 76.5 7.1 71 172-242 14-91 (107)
196 1b7f_A Protein (SXL-lethal pro 98.7 4.2E-08 1.4E-12 80.2 8.2 68 175-242 9-82 (168)
197 2cjk_A Nuclear polyadenylated 98.7 1.9E-08 6.6E-13 82.3 6.0 67 175-241 9-79 (167)
198 3q2s_C Cleavage and polyadenyl 98.7 2.9E-08 9.8E-13 87.5 7.4 72 171-242 70-149 (229)
199 1b7f_A Protein (SXL-lethal pro 98.7 8.2E-08 2.8E-12 78.4 9.2 66 175-240 95-168 (168)
200 2fc8_A NCL protein; structure 98.7 9.4E-08 3.2E-12 72.7 8.5 73 168-242 16-91 (102)
201 1fxl_A Paraneoplastic encephal 98.6 1.2E-07 4.1E-12 77.0 9.3 66 175-240 94-167 (167)
202 2db1_A Heterogeneous nuclear r 98.6 2.9E-08 9.8E-13 78.3 5.3 72 171-242 19-97 (118)
203 2diu_A KIAA0430 protein; struc 98.6 1.9E-07 6.6E-12 71.5 9.6 62 175-242 15-83 (96)
204 2voo_A Lupus LA protein; RNA-b 98.6 5.9E-08 2E-12 83.2 7.2 73 168-242 110-186 (193)
205 3nmr_A Cugbp ELAV-like family 98.6 8.2E-08 2.8E-12 78.8 7.8 68 175-242 9-87 (175)
206 1wg1_A KIAA1579 protein, homol 98.6 4.8E-08 1.6E-12 72.7 5.8 65 175-242 11-77 (88)
207 1l3k_A Heterogeneous nuclear r 98.6 7E-08 2.4E-12 80.9 7.5 72 169-242 106-182 (196)
208 1qm9_A Polypyrimidine tract-bi 98.6 9.1E-08 3.1E-12 80.8 8.0 67 175-242 9-78 (198)
209 3pgw_A U1-A; protein-RNA compl 98.6 1.4E-07 4.9E-12 84.1 9.7 73 168-242 10-89 (282)
210 1qm9_A Polypyrimidine tract-bi 98.6 1.1E-07 3.8E-12 80.3 8.5 71 169-242 122-196 (198)
211 2hgl_A HNRPF protein, heteroge 98.6 5.8E-08 2E-12 79.1 6.2 71 171-241 46-123 (136)
212 2qfj_A FBP-interacting repress 98.6 2E-07 7E-12 79.3 9.9 73 168-242 29-107 (216)
213 2adc_A Polypyrimidine tract-bi 98.6 1.3E-07 4.3E-12 82.5 8.7 72 168-242 35-109 (229)
214 2g4b_A Splicing factor U2AF 65 98.6 7.1E-08 2.4E-12 79.2 6.5 70 169-240 96-171 (172)
215 3pgw_A U1-A; protein-RNA compl 98.6 1.4E-07 4.9E-12 84.1 8.9 70 169-241 209-281 (282)
216 2hzc_A Splicing factor U2AF 65 98.6 1.9E-07 6.4E-12 68.7 7.9 66 168-238 7-85 (87)
217 3tht_A Alkylated DNA repair pr 98.6 1.2E-07 4.1E-12 88.6 8.3 62 178-241 29-97 (345)
218 2yh0_A Splicing factor U2AF 65 98.6 1.2E-07 4.1E-12 79.6 7.6 73 168-242 115-193 (198)
219 3u1l_A PRE-mRNA-splicing facto 98.6 1.4E-07 5E-12 83.9 8.4 59 182-242 156-228 (240)
220 4f02_A Polyadenylate-binding p 98.6 1.5E-07 5.1E-12 81.1 8.2 73 168-242 16-94 (213)
221 3ue2_A Poly(U)-binding-splicin 98.6 6.6E-08 2.2E-12 76.9 5.4 74 168-241 21-107 (118)
222 3sde_A Paraspeckle component 1 98.5 2.1E-07 7.1E-12 82.8 9.0 72 167-242 22-95 (261)
223 1fje_B Nucleolin RBD12, protei 98.5 9.8E-08 3.3E-12 78.8 6.4 71 169-242 101-173 (175)
224 2hgn_A Heterogeneous nuclear r 98.5 7.6E-08 2.6E-12 78.7 5.5 70 172-242 49-122 (139)
225 2lcw_A RNA-binding protein FUS 97.9 9.5E-09 3.3E-13 80.4 0.0 68 175-242 13-94 (116)
226 2dha_A FLJ20171 protein; RRM d 98.5 6.5E-08 2.2E-12 77.4 4.6 70 171-240 25-102 (123)
227 2adc_A Polypyrimidine tract-bi 98.5 3.2E-07 1.1E-11 79.9 9.5 72 168-242 152-227 (229)
228 2dnn_A RNA-binding protein 12; 98.5 2.4E-07 8.1E-12 72.5 7.3 70 171-241 18-91 (109)
229 3tyt_A Heterogeneous nuclear r 98.5 2.4E-07 8.1E-12 80.1 7.9 68 172-239 126-203 (205)
230 2ghp_A U4/U6 snRNA-associated 98.5 2.7E-07 9.2E-12 82.7 7.7 71 169-242 212-290 (292)
231 3smz_A Protein raver-1, ribonu 98.5 2.7E-07 9.3E-12 82.3 7.6 68 175-242 190-263 (284)
232 3smz_A Protein raver-1, ribonu 98.5 3.1E-07 1.1E-11 82.0 8.0 75 168-242 85-174 (284)
233 2hgm_A HNRPF protein, heteroge 98.5 2.9E-07 9.9E-12 74.0 6.8 69 172-241 45-119 (126)
234 2j8a_A Histone-lysine N-methyl 98.4 2.8E-07 9.5E-12 74.6 5.1 62 178-239 15-92 (136)
235 2ghp_A U4/U6 snRNA-associated 98.4 5.2E-07 1.8E-11 80.8 7.1 76 168-243 108-197 (292)
236 2guz_B Mitochondrial import in 98.3 5.9E-07 2E-11 64.1 4.5 53 7-65 5-57 (65)
237 1fje_B Nucleolin RBD12, protei 98.3 3.9E-07 1.3E-11 75.2 4.0 73 168-242 14-90 (175)
238 2g4b_A Splicing factor U2AF 65 98.2 2.9E-06 9.8E-11 69.5 8.2 70 168-242 5-87 (172)
239 2yh0_A Splicing factor U2AF 65 98.2 2.8E-06 9.5E-11 71.1 7.9 69 169-242 6-87 (198)
240 3dxb_A Thioredoxin N-terminall 98.0 1E-05 3.6E-10 69.9 7.5 62 180-241 140-211 (222)
241 1owx_A Lupus LA protein, SS-B, 97.9 7.2E-05 2.5E-09 59.6 9.6 70 170-241 19-94 (121)
242 2dnr_A Synaptojanin-1; RRM dom 97.8 7.9E-05 2.7E-09 56.4 7.8 72 167-242 7-85 (91)
243 1ufw_A Synaptojanin 2; RNP dom 97.5 8.4E-05 2.9E-09 56.6 4.5 71 167-241 15-93 (95)
244 3pq1_A Poly(A) RNA polymerase; 96.0 0.009 3.1E-07 57.6 6.1 54 169-226 55-108 (464)
245 2dhx_A Poly (ADP-ribose) polym 95.5 0.25 8.4E-06 38.0 11.4 63 175-241 14-82 (104)
246 2l9w_A U4/U6 snRNA-associated- 94.8 0.061 2.1E-06 42.0 6.1 63 175-239 27-96 (117)
247 1whv_A Poly(A)-specific ribonu 92.9 0.14 4.8E-06 39.0 4.8 48 176-227 22-69 (100)
248 1wwh_A Nucleoporin 35, nucleop 92.6 0.27 9.2E-06 38.7 6.3 56 182-239 36-91 (119)
249 3ctr_A Poly(A)-specific ribonu 90.3 0.2 6.9E-06 38.2 3.2 46 178-227 14-59 (101)
250 1wey_A Calcipressin 1; structu 87.5 2.1 7.3E-05 32.7 7.3 58 183-242 24-83 (104)
251 2kn4_A Immunoglobulin G-bindin 86.3 0.73 2.5E-05 36.6 4.4 23 204-226 10-32 (158)
252 3p3d_A Nucleoporin 53; structu 73.3 2.3 7.8E-05 33.9 3.0 61 181-241 18-97 (132)
253 3d45_A Poly(A)-specific ribonu 69.3 9.9 0.00034 36.7 7.1 51 173-228 444-494 (507)
254 2i2y_A Fusion protein consists 68.1 4.9 0.00017 31.5 4.0 38 204-242 10-50 (150)
255 4e8u_A Putative uncharacterize 44.6 16 0.00055 30.3 3.3 45 180-224 32-80 (172)
256 1uw4_A UPF3X; nonsense mediate 34.0 1.4E+02 0.0046 21.8 8.0 56 171-226 3-64 (91)
257 3vp9_A General transcriptional 26.0 2E+02 0.0068 21.2 6.6 20 123-142 68-87 (92)
258 4bby_A Alkyldihydroxyacetoneph 23.5 83 0.0028 31.1 5.0 55 185-239 359-420 (658)
259 4eyt_A Telomerase associated p 21.5 90 0.0031 23.2 3.6 33 207-239 46-78 (129)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-20 Score=138.09 Aligned_cols=70 Identities=41% Similarity=0.675 Sum_probs=65.8
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
....|||+||||+++ ++..+|+++||+++++||||++++++.+.+.|+.|++||++|+||.+|..||.++
T Consensus 4 ~~~~~~y~iLgv~~~-----a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 4 GSSGDYYQILGVPRN-----ASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp SCCSCHHHHHTCCTT-----CCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 356799999999998 8999999999999999999999888889999999999999999999999999875
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=143.03 Aligned_cols=71 Identities=27% Similarity=0.523 Sum_probs=66.6
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
+...|||+||||+++ ++.++|++|||+|+++||||++++++.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 14 ~~~~~~Y~vLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 14 YSRTALYDLLGVPST-----ATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SCSSHHHHHHTCCTT-----CCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCccCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 456899999999998 89999999999999999999998888899999999999999999999999998764
No 3
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.79 E-value=6.6e-20 Score=135.96 Aligned_cols=68 Identities=37% Similarity=0.768 Sum_probs=63.7
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
+.|||+||||+++ ++.++|+++||+++++||||+++ ++.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 2 ~~~~y~iLgv~~~-----as~~~Ik~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 2 GKDYYQTLGLARG-----ASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCCSHHHHTCCTT-----CCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 5799999999998 89999999999999999999997 57788999999999999999999999998763
No 4
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.3e-20 Score=144.80 Aligned_cols=70 Identities=39% Similarity=0.634 Sum_probs=66.4
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||+||||+++ ++.++|++|||+++++||||++++++.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 18 ~~~d~Y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 18 DTEDYYTLLGCDEL-----SSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCCHHHHTTCCTT-----SCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 45899999999998 89999999999999999999999888899999999999999999999999999875
No 5
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.4e-19 Score=141.84 Aligned_cols=75 Identities=35% Similarity=0.628 Sum_probs=68.8
Q ss_pred CCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHHHH
Q 023364 2 DVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIKR 81 (283)
Q Consensus 2 ~~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 81 (283)
.....|||+||||+++ ++.++|+++||+|+++||||++++++.+.+.|+.|++||++|+||.+|..||.++....
T Consensus 13 ~~~~~~~Y~vLgv~~~-----as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~ 87 (109)
T 2ctw_A 13 STSGESLYHVLGLDKN-----ATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87 (109)
T ss_dssp TSCSCCHHHHHTCCTT-----CCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred CCCCCCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence 3456899999999998 89999999999999999999999888899999999999999999999999999875443
No 6
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.78 E-value=8.6e-20 Score=140.23 Aligned_cols=71 Identities=24% Similarity=0.446 Sum_probs=64.9
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hhHHHHHHHHHHHHHhccCchhhhHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD------PDAHDNFQKLKSSYEILKDEKARKLFDDL 76 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (283)
+...|||+||||+++ ++..+|++|||+++++||||+++.+ +.+.+.|+.|++||++|+||.+|..||..
T Consensus 13 ~~~~~~y~iLgv~~~-----as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 87 (94)
T 1wjz_A 13 TLKKDWYSILGADPS-----ANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ 87 (94)
T ss_dssp SSCSCHHHHTTCCTT-----CCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred CCCCChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 456799999999998 8999999999999999999998753 46789999999999999999999999998
Q ss_pred HH
Q 023364 77 LK 78 (283)
Q Consensus 77 ~~ 78 (283)
+.
T Consensus 88 l~ 89 (94)
T 1wjz_A 88 RS 89 (94)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.9e-19 Score=136.96 Aligned_cols=70 Identities=41% Similarity=0.648 Sum_probs=64.9
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
....|||+||||+++ ++..+|+++||+++++||||+++ ++.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 14 ~~~~d~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 14 ALDFDPYRVLGVSRT-----ASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSSCHHHHHTCCTT-----CCHHHHHHHHHHHHHHSCTTTCC-STTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred cCCCCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 356899999999998 89999999999999999999997 47789999999999999999999999999763
No 8
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.77 E-value=2.4e-19 Score=131.71 Aligned_cols=67 Identities=39% Similarity=0.737 Sum_probs=61.5
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
+...|||+||||+++ ++..+|+++|++++++||||+++++ .+.|+.|+.||++|+||.+|..||.++
T Consensus 5 ~~~~~~y~iLgl~~~-----a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 5 VKETGYYDVLGVKPD-----ASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp -CCCCHHHHHTCCTT-----CCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 356899999999998 8999999999999999999999753 579999999999999999999999876
No 9
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=134.08 Aligned_cols=68 Identities=32% Similarity=0.681 Sum_probs=63.9
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
...|||+||||+++ ++..+|+++||+++++||||+++ .+.+.+.|+.|++||++|+||.+|..||.++
T Consensus 5 ~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 72 (78)
T 2ctp_A 5 SSGDYYEILGVSRG-----ASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFG 72 (78)
T ss_dssp CSCCHHHHHTCCTT-----CCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 46799999999998 89999999999999999999997 5788999999999999999999999999875
No 10
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=135.64 Aligned_cols=70 Identities=36% Similarity=0.635 Sum_probs=65.4
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
-...|||+||||+++ ++.++|+++||+++++||||+++ ++.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 4 ~~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 4 GSSGSYYDILGVPKS-----ASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CCCCSHHHHHTCCTT-----CCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 356799999999998 89999999999999999999997 68889999999999999999999999999874
No 11
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=134.48 Aligned_cols=69 Identities=38% Similarity=0.691 Sum_probs=63.6
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
...|||+||||+++ ++.++|+++||+++++||||++++++ .+.+.|+.|++||++|+||.+|..||.++
T Consensus 7 ~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQ-----ASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SSCCHHHHTTCCTT-----CCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CCcCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 45799999999998 89999999999999999999998654 67889999999999999999999999875
No 12
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.76 E-value=1.7e-19 Score=141.13 Aligned_cols=69 Identities=36% Similarity=0.673 Sum_probs=65.2
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ ++.++|+++||+++++||||++++++.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 2 ~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 2 KQDYYEILGVSKT-----AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCCSTTTTSSCSS-----CCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 4799999999998 89999999999999999999998778889999999999999999999999999774
No 13
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-18 Score=133.94 Aligned_cols=70 Identities=31% Similarity=0.619 Sum_probs=63.6
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIK 80 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 80 (283)
+...|||+||||+++ ++.++|+++||+++++||||+++++ .+.|+.|++||++|+||.+|..||.++...
T Consensus 5 ~~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 74 (92)
T 2o37_A 5 VKETKLYDLLGVSPS-----ANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEA 74 (92)
T ss_dssp CSCCHHHHHHTCCTT-----CCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred ccCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence 367899999999998 8999999999999999999999754 469999999999999999999999987543
No 14
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=135.83 Aligned_cols=68 Identities=35% Similarity=0.711 Sum_probs=63.1
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.|||+||||+++ ++.++|+++||+++++||||++++.. .+.+.|+.|++||++|+||.+|..||.++.
T Consensus 2 ~d~Y~iLgv~~~-----as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPRS-----ASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCTT-----SCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 489999999998 89999999999999999999998653 578899999999999999999999999874
No 15
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.9e-19 Score=134.22 Aligned_cols=69 Identities=38% Similarity=0.675 Sum_probs=63.6
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
...|||+||||+++ ++.++|+++||+++++||||++++++ .+.+.|+.|++||++|+||.+|..||..+
T Consensus 7 ~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 7 GMANYYEVLGVQAS-----ASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCCCHHHHHTCCTT-----CCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred CCcCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 45799999999998 89999999999999999999998653 67889999999999999999999999875
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.73 E-value=1.9e-18 Score=136.41 Aligned_cols=70 Identities=29% Similarity=0.471 Sum_probs=64.6
Q ss_pred CCCcccccccccCCCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKL-TEKEISKAYKWKALELHPDKRPD---DPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a-~~~eIkkaYr~la~~~HPDk~~~---~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||+||||+++ + +.++|++|||+++++||||++++ .+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 13 ~~~~~y~iLgv~~~-----a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 13 GLENCYDVLEVNRE-----EFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTSCHHHHTTCCGG-----GCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCC-----CCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 46799999999998 7 99999999999999999999975 35688999999999999999999999999884
No 17
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.73 E-value=3.1e-18 Score=146.13 Aligned_cols=98 Identities=20% Similarity=0.307 Sum_probs=74.5
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
...|||+||||++++ +++..+|+++||+++++||||++++.+. +...|..|++||++|+||.+|+.||..+.
T Consensus 2 ~~~d~Y~iLgl~~~a---~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 2 NAMNYFELFGLPIQF---ELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp --CCHHHHTTCCSSS---CCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 357999999999972 2349999999999999999999987654 67899999999999999999999999875
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 023364 79 IKREKQQRQSQQDGKRRKMMSDLEERER 106 (283)
Q Consensus 79 ~~~~~~~r~~~~~~~r~~~~~~l~~re~ 106 (283)
........... ..-.-+++.|+.||.
T Consensus 79 g~~~~~e~~~~--~d~~fLme~me~rE~ 104 (174)
T 3hho_A 79 GIEMNAEQQTL--QDPMFLMEQMELREE 104 (174)
T ss_dssp TCCCC----CC--CCHHHHHHHHHHHHH
T ss_pred CCCcccccCCC--CCHHHHHHHHHHHHH
Confidence 33221111111 223467788888886
No 18
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=139.93 Aligned_cols=70 Identities=23% Similarity=0.441 Sum_probs=64.0
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------hHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP------DAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~------~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
...|||+||||+++ ++.++|++|||+++++|||||+++++ .+.+.|..|++||++|+||.+|+.||..+
T Consensus 8 ~~~~~y~iLgv~~~-----a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 8 PKKDWYSILGADPS-----ANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCSHHHHHHTCCTT-----CCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CCCChhHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45799999999998 89999999999999999999998654 26789999999999999999999999987
Q ss_pred H
Q 023364 78 K 78 (283)
Q Consensus 78 ~ 78 (283)
.
T Consensus 83 ~ 83 (155)
T 2l6l_A 83 C 83 (155)
T ss_dssp H
T ss_pred c
Confidence 4
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.70 E-value=9.1e-18 Score=145.38 Aligned_cols=68 Identities=43% Similarity=0.785 Sum_probs=64.9
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.|||+||||+++ ++.++|++|||+++++||||++++++.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 2 ~~~y~~l~~~~~-----a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~ 69 (210)
T 3apq_A 2 QNFYSLLGVSKT-----ASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 69 (210)
T ss_dssp CCHHHHHTCCTT-----CCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred CCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 489999999998 89999999999999999999998888999999999999999999999999999874
No 20
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.70 E-value=3e-18 Score=145.84 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=73.8
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHhccCchhhhHHHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLKIK 80 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 80 (283)
+|||+||||++++ .++..+|+++||+++++||||++++.+. +.+.|..|+.||++|+||.+|+.||..+...
T Consensus 1 ~d~y~lLgl~~~a---~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~ 77 (171)
T 1fpo_A 1 MDYFTLFGLPARY---QLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGF 77 (171)
T ss_dssp CHHHHHTTCCSSS---CCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTC
T ss_pred CCHHHHCCCCCCC---CCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCC
Confidence 4899999999972 2399999999999999999999987653 5679999999999999999999999987532
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 023364 81 REKQQRQSQQDGKRRKMMSDLEERER 106 (283)
Q Consensus 81 ~~~~~r~~~~~~~r~~~~~~l~~re~ 106 (283)
......... ..-.-+++.|+.||.
T Consensus 78 ~~~~e~~~~--~d~~fLme~me~rE~ 101 (171)
T 1fpo_A 78 DLASEQHTV--RDTAFLMEQLELREE 101 (171)
T ss_dssp CTTCSSSCC--SCHHHHHHHHHHHHH
T ss_pred Ccccccccc--CCHHHHHHHHHHHHH
Confidence 211110111 223467778888774
No 21
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9e-18 Score=128.32 Aligned_cols=63 Identities=29% Similarity=0.473 Sum_probs=58.0
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKL 72 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~ 72 (283)
...|||+||||+++ ++.++|++|||+++++||||+++ ++.+.+.|+.|++||++|+||.+|..
T Consensus 25 ~~~~~y~iLgv~~~-----as~~eIk~aYr~la~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPG-----ASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTT-----CCHHHHHHHHHHHHHHHCTTTCC-CTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCcccccC
Confidence 35799999999998 89999999999999999999997 57788999999999999999998863
No 22
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=139.56 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=63.0
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||++++ +++..+|+++||+|+++||||++++++. +.+.|..|++||++|+||.+|+.||..+.
T Consensus 42 ~~d~y~lLgv~~~~---~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 42 TRDYFSLMDCNRSF---RVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp TCCHHHHTTSCSCS---CCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 57999999999863 4799999999999999999999986542 56789999999999999999999998664
No 23
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=117.15 Aligned_cols=76 Identities=32% Similarity=0.458 Sum_probs=69.1
Q ss_pred ccceEEEEeeec-----CccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEeec
Q 023364 166 KEKVLKVSWEKF-----GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPL 240 (283)
Q Consensus 166 ~~~~lkvkWk~~-----~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~~ 240 (283)
..++|+|+|+.. +..+|+++|+++|++||.|.+|.|. ++++|||||+|.+.++|..|+..+.++.++||.|.|.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWL 87 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECS
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEc
Confidence 456899999983 3679999999999999999999995 5789999999999999999999999999999999998
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
.+
T Consensus 88 ~~ 89 (100)
T 2d9o_A 88 EG 89 (100)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 24
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.63 E-value=5.3e-16 Score=133.03 Aligned_cols=97 Identities=18% Similarity=0.271 Sum_probs=73.1
Q ss_pred CCCcccccc------cccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHH
Q 023364 4 DHVDHYRVL------GLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (283)
Q Consensus 4 ~~~d~Y~vL------gv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (283)
...|||+|| |+++. +++..+|+++||+++++||||++++ +.+.|..|++||++|+||.+|..||..+
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~----~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIW----TIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCS----CCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCC----CCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 356999999 46652 3899999999999999999999975 6689999999999999999999999987
Q ss_pred -HHHHHHHHH--HhhhhhHHHHHHHHHHHHHHH
Q 023364 78 -KIKREKQQR--QSQQDGKRRKMMSDLEERERA 107 (283)
Q Consensus 78 -~~~~~~~~r--~~~~~~~r~~~~~~l~~re~~ 107 (283)
....-.... .........-+++.|+.||.=
T Consensus 82 ~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~l 114 (181)
T 3uo3_A 82 LRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDEL 114 (181)
T ss_dssp HHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCccccccccccccCCHHHHHHHHHHHHHH
Confidence 322111110 001112345778888888863
No 25
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.62 E-value=9.2e-17 Score=137.45 Aligned_cols=66 Identities=21% Similarity=0.440 Sum_probs=60.1
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHhccCchhhhHH
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD---AHDNFQKLKSSYEILKDEKARKLF 73 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~---a~~~f~~i~~Ay~vL~d~~~R~~Y 73 (283)
+.+.|||+||||+++ ++..+||+|||+++++|||||+++.+. +.+.|+.|++||++|+|+.+|..|
T Consensus 114 ~~~~d~Y~vLgv~~~-----As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 114 WAGETKWKPVGMADL-----VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CTTCCCCCCCCGGGG-----SSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCccchhhcCCCCCC-----CCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 344799999999998 899999999999999999999986653 789999999999999999999876
No 26
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.62 E-value=1.2e-16 Score=121.75 Aligned_cols=62 Identities=24% Similarity=0.279 Sum_probs=56.0
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHhccCchhh
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKAR 70 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R 70 (283)
...++|+||||+++ ++.++|++|||+|+++||||++++++ .+.+.|+.|++||++|+|...|
T Consensus 14 ~~~~~y~vLgv~~~-----as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 14 ILKEVTSVVEQAWK-----LPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CHHHHHHHHHHTTS-----SCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 34689999999998 89999999999999999999998764 5889999999999999997665
No 27
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.62 E-value=1.6e-16 Score=121.73 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=51.6
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHhccC
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP---DAHDNFQKLKSSYEILKD 66 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~---~a~~~f~~i~~Ay~vL~d 66 (283)
.++|.+|||+++ ++.++||+|||+++++|||||+++++ .|.+.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~-----as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADL-----VTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGS-----SSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 589999999998 89999999999999999999998765 378899999999999975
No 28
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.61 E-value=4.8e-17 Score=151.55 Aligned_cols=68 Identities=35% Similarity=0.567 Sum_probs=0.0
Q ss_pred CCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
..|||+||||+++ |+.++||+|||+|+++||||+++ ++.|.+.|+.|++||++|+||.+|+.||.++.
T Consensus 27 ~~d~Y~vLgv~~~-----as~~eIk~aYr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 27 LKDYYAILGVQPT-----DDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCCCCCC-ChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 4799999999998 89999999999999999999997 46788999999999999999999999999854
No 29
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.59 E-value=5.2e-17 Score=129.39 Aligned_cols=63 Identities=27% Similarity=0.390 Sum_probs=57.1
Q ss_pred CCcccccccccCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHH
Q 023364 5 HVDHYRVLGLPSGEEGAKLTE--KEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDL 76 (283)
Q Consensus 5 ~~d~Y~vLgv~~~~~~~~a~~--~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (283)
..|||+||||+++ ++. .+||+|||+|+++||||++++ .+.|+.|++||++|+||.+|+.||.+
T Consensus 7 ~~~~Y~iLgv~~~-----as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~ 71 (114)
T 1gh6_A 7 SLQLMDLLGLERS-----AWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHHHTTCCTT-----SCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred hhhHHHHcCCCCC-----CCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence 3589999999998 677 999999999999999999874 37999999999999999999999854
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.58 E-value=4.9e-16 Score=122.21 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=52.6
Q ss_pred CCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----hHHHHHHHHHHHHHhccCch
Q 023364 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPD---DP----DAHDNFQKLKSSYEILKDEK 68 (283)
Q Consensus 3 ~~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~---~~----~a~~~f~~i~~Ay~vL~d~~ 68 (283)
+.+.|||.|||++. ++..+||+|||+++++|||||+++ ++ .|.+.|+.|++||++|+|+.
T Consensus 38 ~~~~d~Y~vl~~~~------As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 38 WSGSGWKPVPLMDM------IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CTTSCCCCCCGGGS------CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCHHHHcCCCC------CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 45679999999985 799999999999999999999863 11 36889999999999999985
No 31
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.56 E-value=1.5e-16 Score=135.27 Aligned_cols=64 Identities=27% Similarity=0.346 Sum_probs=56.3
Q ss_pred CcccccccccCCCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLT--EKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~--~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (283)
.|||+||||+++ ++ .++|++|||++++++|||++++ .+.|+.|++||++|+||.+|+.||.++.
T Consensus 11 ~d~Y~vLGl~~~-----as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLERS-----AWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCGG-----GTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCCC-----CCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 689999999998 55 7999999999999999999874 3689999999999999999999999875
No 32
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.53 E-value=1.6e-15 Score=113.03 Aligned_cols=61 Identities=30% Similarity=0.310 Sum_probs=53.6
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLF 73 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Y 73 (283)
.++|+||||+++. .++..+|++|||+++++||||+++ + .+.|+.|++||++|+|+..|..+
T Consensus 11 ~~~y~iLgl~~~~---~a~~~eIk~aYr~la~~~HPDk~~-~---~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 11 ERLLELLKLPRQL---WGDFGRMQQAYKQQSLLLHPDKGG-S---HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHTCCSSS---TTCHHHHHHHHHHHHHHSSGGGSC-C---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHCcCCCC-C---HHHHHHHHHHHHHHhhHHHHHHH
Confidence 4799999999862 279999999999999999999985 3 47999999999999999888763
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.50 E-value=5e-15 Score=108.17 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=50.8
Q ss_pred CCcccccccccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhh
Q 023364 5 HVDHYRVLGLPS-GEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKAR 70 (283)
Q Consensus 5 ~~d~Y~vLgv~~-~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R 70 (283)
..++|+||||++ + ++.++|+++||+|+++||||++. + .+.|+.|++||++|+|+..|
T Consensus 13 ~~~~y~iLgl~~~~-----a~~~eIk~ayr~l~~~~HPDk~g-~---~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENT-----LTKKKLKEVHRKIMLANHPDKGG-S---PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTT-----CCHHHHHHHHHHHHHHHCGGGTC-C---HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-C---HHHHHHHHHHHHHHhhhhhc
Confidence 358999999998 6 89999999999999999999963 3 36999999999999998765
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.46 E-value=3.7e-15 Score=151.99 Aligned_cols=71 Identities=41% Similarity=0.746 Sum_probs=40.3
Q ss_pred CCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhccCchhhhHHHHHHHH
Q 023364 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKI 79 (283)
Q Consensus 4 ~~~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 79 (283)
.+.|||+||||+++ |+.++|++|||+++++||||++++++.+.+.|+.|++||++|+||.+|+.||.++..
T Consensus 19 ~~~~~y~~lg~~~~-----a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~ 89 (780)
T 3apo_A 19 HDQNFYSLLGVSKT-----ASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 89 (780)
T ss_dssp ----CHHHHTCCTT-----CCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC---
T ss_pred CCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccc
Confidence 46799999999998 899999999999999999999988888999999999999999999999999998753
No 35
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.17 E-value=6.4e-11 Score=91.09 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=58.3
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
...+..+|+++|+++|++||.|.+|.|.. ++.+|||||+|.+.++|..|+... .-+.+.+|.|.|.+|
T Consensus 25 ~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 25 NYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 55667799999999999999999998842 567899999999999999999764 444589999999875
No 36
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.15 E-value=1.1e-10 Score=90.62 Aligned_cols=71 Identities=24% Similarity=0.253 Sum_probs=59.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC----CCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG----NLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g----~~~~pl~v~~~~~ 242 (283)
++|-| ...+...|+++|+++|++||.|.+|.|+ +.+|+|||+|.+.++|..|+....| ..+.||.|.+.++
T Consensus 22 ~~l~V--~NLp~~~te~~L~~lF~~fG~V~~v~i~--~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 22 PVVHI--RGLIDGVVEADLVEALQEFGPISYVVVM--PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp SEEEE--ESCCTTCCHHHHHHHHGGGSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cEEEE--eCCCCCCCHHHHHHHHhccCCEEEEEEE--cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34555 5566679999999999999999999985 4589999999999999999987544 3489999999864
No 37
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=3.6e-10 Score=87.99 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=59.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cC--CCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CG--NLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g--~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|++||.|..|.|.. .+|+|||+|.+.++|..|+... .+ +.+.||.|.|..+
T Consensus 16 ~~l~V--~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 16 PVVHV--RGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp SEEEE--ESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 45655 45566799999999999999999999853 4899999999999999999864 33 6689999999865
No 38
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.13 E-value=2.1e-10 Score=96.65 Aligned_cols=76 Identities=25% Similarity=0.221 Sum_probs=63.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CCC--CCeEEeecCCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NLS--NPLLVLPLQPA 243 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~--~pl~v~~~~~~ 243 (283)
+.++|--......+|+++|+++|++||.|..|.|...+++|+|||+|.+.++|..|+..+.| +.+ ++|.|.|..+.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 45666556667779999999999999999999996555689999999999999999987544 333 89999998763
No 39
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=3e-10 Score=87.99 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=59.2
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cC--CCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CG--NLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g--~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|++||.|.+|.|.. .+|+|||+|.+.++|..|+... .+ +.+.||.|.|..+
T Consensus 16 ~~l~V--~nLp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 16 RVLHI--RKLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp SEEEE--ESCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 45555 45556799999999999999999998854 3899999999999999999853 33 5689999999865
No 40
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.2e-10 Score=91.20 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=58.5
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC----CCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG----NLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g----~~~~pl~v~~~~~ 242 (283)
+|-| ...+..+|+++|+++|++||.|.+|.|+. .+|||||+|.+.++|..|+....+ +.+.||.|.|..+
T Consensus 18 ~LfV--~nLp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 18 VIHI--RKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp EEEE--CSCCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 4444 55666799999999999999999999964 379999999999999999986432 4588999999865
No 41
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.12 E-value=8.6e-10 Score=86.10 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=59.9
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecCCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQPA 243 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~~~ 243 (283)
+|-.......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.... .+.+.+|.|.|..+.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 17 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 333356666799999999999999999999852 4468999999999999999998643 345899999998753
No 42
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.3e-10 Score=90.85 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=59.7
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC-------CCCCeEEeec
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN-------LSNPLLVLPL 240 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~-------~~~pl~v~~~ 240 (283)
++|-|+-......+|+++|+++|++||.|..|.|.. .+|||||+|.+.++|..|+..+.|. .+.||+|.++
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 456665333556799999999999999999999853 4799999999999999999986664 3678999997
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
..
T Consensus 104 ~~ 105 (114)
T 2cq2_A 104 EK 105 (114)
T ss_dssp SC
T ss_pred cc
Confidence 63
No 43
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-09 Score=82.41 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=60.4
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 7 ~l~v--~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 7 GLYV--GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 4555 45556799999999999999999999853 45689999999999999999985 4555699999999875
No 44
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=1.4e-09 Score=82.56 Aligned_cols=73 Identities=19% Similarity=0.330 Sum_probs=60.4
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+. +...+.+.+|.|.|..+
T Consensus 11 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 11 NKIFV--GGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp CEEEE--ESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 44555 55666799999999999999999999853 4579999999999999999997 23445589999999875
No 45
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=1.6e-09 Score=82.66 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=58.7
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQPA 243 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~~ 243 (283)
......+|+++|+++|++||.|..|.|..+ ++|+|||+|.+.++|..|+.. .....+.+|.|.|..+.
T Consensus 6 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 6 GNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp ECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 345567999999999999999999998644 799999999999999999984 56677999999998763
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=87.88 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=57.1
Q ss_pred eecCccccHHHHHHHhcccC-CeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhc---CCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFG-KVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVC---GNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG-~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~---g~~~~pl~v~~~~~ 242 (283)
...+..+|+++|+++|++|| .|.+|.|+. ++++|||||+|.+.++|..|+..+. .+.+.+|.|.|..|
T Consensus 7 ~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred eCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 44566799999999999999 899998842 5679999999999999999997542 24588999999875
No 47
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.08 E-value=2.9e-10 Score=92.25 Aligned_cols=75 Identities=27% Similarity=0.239 Sum_probs=62.9
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcce-EEEEecCHHHHHHHHHhhcCCC--C--CCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGS-ALVVMATKSAAGAATGSVCGNL--S--NPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~-A~V~F~~~~~A~~A~~~~~g~~--~--~pl~v~~~~~ 242 (283)
+.|+|--......+|+++|+++|++||.|..|+|.. +++|+ |||+|.+.++|..|+..+.|.. + ++|+|.|..+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 467776677777899999999999999999998854 34677 9999999999999998866643 4 8999999876
Q ss_pred C
Q 023364 243 A 243 (283)
Q Consensus 243 ~ 243 (283)
.
T Consensus 106 ~ 106 (130)
T 3zzy_A 106 T 106 (130)
T ss_dssp S
T ss_pred C
Confidence 3
No 48
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=2.6e-10 Score=88.64 Aligned_cols=70 Identities=24% Similarity=0.292 Sum_probs=58.6
Q ss_pred eEEEEeeecCc-cccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc--C--CCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC--G--NLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~-~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~--g--~~~~pl~v~~~~~ 242 (283)
+|-| ...+. .+|+++|+++|++||.|.+|.|+ +.+|+|||+|++.++|..|+.... + +.+.||.|.|..+
T Consensus 17 ~l~V--~nLp~~~~te~dL~~lF~~fG~V~~v~i~--~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 17 VVHI--MDFQRGKNLRYQLLQLVEPFGVISNHLIL--NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp EEEE--ESCCCSSSHHHHHHTTTGGGSCEEEEEEC--SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred EEEE--eCCCCCcCCHHHHHHHHHhcCCEEEEEEE--cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 4444 55666 78999999999999999999985 346999999999999999998643 3 5789999999874
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=9.7e-10 Score=83.42 Aligned_cols=73 Identities=26% Similarity=0.246 Sum_probs=60.4
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..
T Consensus 9 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 9 GRLFV--RNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp EEEEE--ECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34554 55566799999999999999999999852 457899999999999999999754 44568999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 87 ~ 87 (99)
T 1whw_A 87 I 87 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 50
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.9e-10 Score=90.90 Aligned_cols=71 Identities=21% Similarity=0.269 Sum_probs=59.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc----CCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC----GNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~----g~~~~pl~v~~~~~ 242 (283)
++|-| ...+..+|+++|+++|++||.|.+|.|+. .+|+|||+|.+.++|..|+.... .+.+.||.|.|..+
T Consensus 32 ~~LfV--gNLp~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 32 RVIHI--RKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SEEEE--ESCCTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 35555 45566799999999999999999999864 37999999999999999998542 36689999999865
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.06 E-value=1.8e-09 Score=85.08 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=61.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 8 ~~l~V--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 8 GKLFI--GGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp CEEEE--ECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 34444 56666799999999999999999999853 457899999999999999999864 445689999999876
Q ss_pred C
Q 023364 243 A 243 (283)
Q Consensus 243 ~ 243 (283)
+
T Consensus 86 ~ 86 (116)
T 2fy1_A 86 P 86 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 52
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.06 E-value=3.3e-10 Score=86.79 Aligned_cols=74 Identities=9% Similarity=0.125 Sum_probs=60.5
Q ss_pred ccceEEEEeeecCccccHHHHHHHhcccCC--eeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCC------CCC
Q 023364 166 KEKVLKVSWEKFGEDYTAERLREIFSEFGK--VEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGN------LSN 233 (283)
Q Consensus 166 ~~~~lkvkWk~~~~~~te~~L~~~f~~yG~--V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~------~~~ 233 (283)
.+++|-| ...+...|+++|+++|++||. |.+|.|.. ++++|||||+|.+.++|..|+....|. .+.
T Consensus 8 ~m~tlfV--~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 8 HMDTIIL--RNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCEEEE--ESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred ccCEEEE--eCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 4566666 556667999999999999995 67888742 567999999999999999999886663 378
Q ss_pred CeEEeecC
Q 023364 234 PLLVLPLQ 241 (283)
Q Consensus 234 pl~v~~~~ 241 (283)
+|.|.|.+
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 89999875
No 53
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=7.7e-10 Score=84.72 Aligned_cols=72 Identities=21% Similarity=0.079 Sum_probs=61.0
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.+...+.+.+|.|.|..+
T Consensus 17 ~l~v--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 17 DLIV--LGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CEEE--ESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred EEEE--EcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 4544 55666799999999999999999998852 556899999999999999999976667788999999865
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1e-09 Score=84.01 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=58.6
Q ss_pred eecCccccHHHHHHHhcc-cCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC---CCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSE-FGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG---NLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~-yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g---~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+. ||.|..|.|.. ++.+|+|||+|.+.++|..|+....| +.+.+|.|.|..+
T Consensus 15 ~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 15 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp ECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred eCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 556667999999999999 99999998852 45799999999999999999986554 6689999999865
No 55
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=8.7e-10 Score=83.60 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=58.8
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCC--CCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNL--SNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~--~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|++||.|.+|.+.. .+|+|||+|.+.++|..|+... ..+. +.+|.|.|..+
T Consensus 18 ~~l~V--~nlp~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 18 TRLWV--GGLGPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp SCEEE--ECCCSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 34555 45566799999999999999999999853 3899999999999999999853 4445 78999999876
No 56
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.04 E-value=2.7e-10 Score=85.44 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=55.3
Q ss_pred eecCccccHHHHHHHhcccC--CeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFG--KVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG--~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+.|| .|.+|.|.. ++++|+|||+|.+.++|..|+.. +..+.+.+|.|.+..|
T Consensus 7 ~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 7 GNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp ESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred eCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 34455789999999999999 999998842 56799999999999999999975 4556699999999876
No 57
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=1.5e-09 Score=87.38 Aligned_cols=75 Identities=25% Similarity=0.273 Sum_probs=62.1
Q ss_pred cceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcce-EEEEecCHHHHHHHHHhhcCCC--C--CCeEEeecC
Q 023364 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGS-ALVVMATKSAAGAATGSVCGNL--S--NPLLVLPLQ 241 (283)
Q Consensus 167 ~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~-A~V~F~~~~~A~~A~~~~~g~~--~--~pl~v~~~~ 241 (283)
.++|+|--......+|+++|+++|++||.|..|+|.. + .|+ |||+|.+.++|..|+..+.|.. + ++|.|.+..
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4467776667777899999999999999999999854 3 496 9999999999999999866643 3 699999987
Q ss_pred CC
Q 023364 242 PA 243 (283)
Q Consensus 242 ~~ 243 (283)
+.
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 58
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=9.2e-10 Score=86.13 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=58.2
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
|-.......+|+++|+++|++||.|..|.|. +.+|+|||+|.+.++|..|+..+ ..+.+.+|.|.|...
T Consensus 13 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 13 ILAKNLPAGTLAAEIQETFSRFGSLGRVLLP--EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECC--SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe--CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3335556679999999999999999999984 47899999999999999999864 445699999999754
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-09 Score=83.02 Aligned_cols=72 Identities=26% Similarity=0.368 Sum_probs=60.7
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 17 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 17 NLYV--KNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp CEEE--ECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 4444 55566799999999999999999999863 467999999999999999999854 445699999999875
No 60
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.04 E-value=4.5e-10 Score=88.32 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=57.4
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+.||.|.+|.|.. ..++|||||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 11 ~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 11 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 55666799999999999999999998853 446899999999999999999764 344588999999765
No 61
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=2.5e-09 Score=79.93 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=58.8
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|. +|+|||+|.+.++|..|+....| +.+.+|.|.|..+
T Consensus 9 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 9 VKLFI--GNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp EEEEE--ESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred eEEEE--eCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 34444 5666779999999999999999999995 79999999999999999976444 5699999999875
No 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.03 E-value=6.1e-10 Score=82.00 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=57.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeec
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~ 240 (283)
++|-| ...+..+|+++|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+... ....+.+|.|.|.
T Consensus 8 ~~l~V--~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 8 RVLYV--GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp SEEEE--ECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEE--ECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34555 45556799999999999999999998842 457999999999999999999754 4445788888875
No 63
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.03 E-value=1.6e-09 Score=83.11 Aligned_cols=73 Identities=22% Similarity=0.388 Sum_probs=60.0
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC--CCC---CCeEEee
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG--NLS---NPLLVLP 239 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~---~pl~v~~ 239 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+....| +.+ .+|.|.|
T Consensus 16 ~~l~v--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 16 RKLFV--GMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CEEEE--ESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 34444 56667799999999999999999999853 45589999999999999999986544 345 8999999
Q ss_pred cCC
Q 023364 240 LQP 242 (283)
Q Consensus 240 ~~~ 242 (283)
..+
T Consensus 94 a~~ 96 (105)
T 2dnh_A 94 ADT 96 (105)
T ss_dssp SCS
T ss_pred Ccc
Confidence 875
No 64
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.4e-09 Score=83.03 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=60.8
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+... ..+.+.+|.|.|..
T Consensus 13 ~~l~v--~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 13 GKLFV--GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp SEEEE--ESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CEEEE--ECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 44555 56666799999999999999999999953 446899999999999999999754 45568999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 91 ~ 91 (102)
T 1x5s_A 91 K 91 (102)
T ss_dssp C
T ss_pred C
Confidence 5
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=2.7e-09 Score=81.58 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=60.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ...+|+|||+|.+.++|..|+.... .+.+.+|.|.|..+
T Consensus 16 ~~l~V--~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 16 KRLHV--SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CEEEE--ESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 34444 56667799999999999999999999853 3469999999999999999998643 45689999999875
No 66
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.03 E-value=5.4e-10 Score=82.68 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=57.4
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEecC----C-CcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSS----K-KKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~~----k-~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+.||.|..|.|..+ . .+|+|||+|.+.++|..|+.. .....+.+|.|.|..+
T Consensus 10 ~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 10 GRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 455667999999999999999999998432 2 789999999999999999985 4445589999999875
No 67
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=1.2e-09 Score=83.53 Aligned_cols=71 Identities=24% Similarity=0.357 Sum_probs=59.5
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~~ 242 (283)
|-.......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.... .+.+.+|.|.|..+
T Consensus 18 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 18 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp EEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 33356666799999999999999999999852 4568999999999999999998644 44589999999876
No 68
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=1.9e-09 Score=82.53 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=60.0
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. ..++|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 17 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 17 TLYV--GNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EEEE--eCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 4444 56666799999999999999999999853 346899999999999999999854 445689999999875
No 69
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.02 E-value=7.2e-10 Score=84.00 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=59.0
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec--C-----CCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEee
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS--S-----KKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLP 239 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~--~-----k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~ 239 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. . ..+|+|||+|.+.++|..|+... ..+.+.+|.|.|
T Consensus 7 ~l~V--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 7 GLFI--KNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CEEE--ESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4444 45556799999999999999999999852 1 56899999999999999999854 444588999999
Q ss_pred cCC
Q 023364 240 LQP 242 (283)
Q Consensus 240 ~~~ 242 (283)
..+
T Consensus 85 a~~ 87 (98)
T 2cpf_A 85 SER 87 (98)
T ss_dssp SSC
T ss_pred ccC
Confidence 875
No 70
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.02 E-value=1e-09 Score=88.49 Aligned_cols=73 Identities=25% Similarity=0.386 Sum_probs=59.2
Q ss_pred ceEEEEeeecCccccHHHHH----HHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeec
Q 023364 168 KVLKVSWEKFGEDYTAERLR----EIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~----~~f~~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~ 240 (283)
++|-| ...+..+++++|+ ++|++||.|.+|.+. +++.+|||||+|.+.++|..|+... ..+.+.||.|.|.
T Consensus 30 ~~LfV--~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 30 QVVLI--TNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp SEEEE--ESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 34555 4555668888765 799999999999884 3678999999999999999999864 4556999999998
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
.+
T Consensus 108 ~~ 109 (127)
T 2a3j_A 108 ET 109 (127)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 71
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=9e-10 Score=83.89 Aligned_cols=73 Identities=26% Similarity=0.204 Sum_probs=60.7
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 18 ~~l~v--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 18 HKLFI--SGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp SCEEE--ESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 34555 45566799999999999999999999853 45689999999999999999975 4456689999999876
No 72
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.01 E-value=1.3e-09 Score=85.10 Aligned_cols=73 Identities=22% Similarity=0.370 Sum_probs=61.0
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|. ++.++|+|||+|.+.++|..|+... ....+.+|.|.|..+
T Consensus 9 ~~l~V--~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 9 RILYI--RNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp SEEEE--ESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 34555 4556679999999999999999999985 4667999999999999999999854 445689999999875
No 73
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.01 E-value=8.4e-10 Score=81.58 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=58.3
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
|-.......+|+++|+++|+.||.|.+|.|.. ++.+|+|||+|.+.++|..|+... ....+.+|.|.|..+
T Consensus 9 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 9 VFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 33356666799999999999999999999852 456899999999999999999864 445588999999764
No 74
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.01 E-value=3.3e-09 Score=81.47 Aligned_cols=72 Identities=21% Similarity=0.426 Sum_probs=60.2
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--C---CCCCeEEee
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--N---LSNPLLVLP 239 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~---~~~pl~v~~ 239 (283)
+|-| ......+|+++|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+....| . .+.+|.|.|
T Consensus 15 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 15 KLFI--GQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 4444 55666799999999999999999999953 45789999999999999999987554 3 579999999
Q ss_pred cCC
Q 023364 240 LQP 242 (283)
Q Consensus 240 ~~~ 242 (283)
..+
T Consensus 93 a~~ 95 (106)
T 2dgp_A 93 ADS 95 (106)
T ss_dssp CCC
T ss_pred CCc
Confidence 875
No 75
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=5.5e-10 Score=88.34 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=59.0
Q ss_pred ceEEEEeeecCcc-ccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cC--CCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGED-YTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CG--NLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~-~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g--~~~~pl~v~~~~~ 242 (283)
++|-| ...... +|+++|+++|++||.|.+|.|. +.+|+|||+|.+.++|..|+.+. .+ +.+.+|.|.|.++
T Consensus 26 ~~l~V--~NLp~~~~te~~L~~lF~~fG~V~~v~i~--~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 26 RVIHL--SNLPHSGYSDSAVLKLAEPYGKIKNYILM--RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CEEEE--ESCCCSSCCSHHHHTTTTTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CEEEE--eCCCCccCCHHHHHHHHHhcCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 34544 455555 8999999999999999999995 46899999999999999999853 34 6789999999864
No 76
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.01 E-value=1.1e-09 Score=80.28 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=57.2
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
...+..+|+++|+++|+.||.|.+|.+.. ++.+|+|||+|.+.++|..|+... ....+.+|.|.|..+
T Consensus 7 ~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 7 GDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp ECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 44556799999999999999999998852 456999999999999999999864 444588999999875
No 77
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.2e-09 Score=84.63 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=57.1
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~ 241 (283)
...+..+|+++|+++|++||+|.+|.|+. +.++|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 17 ~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 17 KGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp ECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred ECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 55666799999999999999999999963 55799999999999999999973 345568999999854
No 78
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.4e-09 Score=84.11 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=60.4
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec-CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. .+.+|+|||+|.+.++|..|+.... .+.+.+|.|.|..+
T Consensus 23 ~~l~V--~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 23 CRIYV--GNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp SEEEE--ESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 34555 45566799999999999999999999953 5569999999999999999997643 34588999999875
No 79
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=2.2e-09 Score=82.12 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=60.9
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 14 ~~l~V--~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 14 ITLKV--DNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CEEEE--ESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred eEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 34544 56666799999999999999999999853 45689999999999999999985 445568999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 92 ~ 92 (103)
T 2dnm_A 92 Y 92 (103)
T ss_dssp S
T ss_pred c
Confidence 5
No 80
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.00 E-value=9.1e-10 Score=86.29 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=59.5
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
+|-| ...+..+|+++|+++|++||.|..|.|.. ++++|+|||+|.+.++|..|+....| +.+.+|.|.+...
T Consensus 8 ~lfV--~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 8 EVTF--ARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred EEEE--ECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4444 45666799999999999999999998852 56799999999999999999986544 5688999998753
No 81
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.5e-09 Score=82.89 Aligned_cols=73 Identities=26% Similarity=0.355 Sum_probs=60.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 13 ~~l~V--~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 13 RVLYV--GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp SCEEE--ESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CEEEE--eCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 34555 45556799999999999999999999842 45799999999999999999975 444568999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 91 ~ 91 (102)
T 2cqb_A 91 P 91 (102)
T ss_dssp C
T ss_pred C
Confidence 5
No 82
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.00 E-value=2.3e-09 Score=83.12 Aligned_cols=69 Identities=17% Similarity=0.097 Sum_probs=57.2
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CCC-----CCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NLS-----NPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~-----~pl~v~~~~~ 242 (283)
+|-.......+|+++|+++|+.||.|..|.|..+ |+|||+|.+.++|..|+..+.| +.+ .+|.|.|..+
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 4444566677999999999999999999998543 9999999999999999986443 334 7899999876
No 83
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.6e-09 Score=83.89 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=58.9
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|..+ +|+|||+|.+.++|..|+....| +.+.+|.|.|..+
T Consensus 27 ~l~V--~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 27 TVYC--GGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp EEEE--ECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 4544 556667999999999999999999998533 89999999999999999976443 4589999999875
No 84
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.99 E-value=3.7e-09 Score=81.20 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=59.9
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHHhh---cCCCCCCeEEeec
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATGSV---CGNLSNPLLVLPL 240 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~A~~~~---~g~~~~pl~v~~~ 240 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+... ..+.+.+|.|.|.
T Consensus 17 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 17 KILV--RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp CEEE--ESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred EEEE--eCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence 4544 55666799999999999999999999842 346999999999999999999754 4455899999998
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
.+
T Consensus 95 ~~ 96 (107)
T 2cph_A 95 DS 96 (107)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 85
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=3.2e-09 Score=81.94 Aligned_cols=69 Identities=22% Similarity=0.201 Sum_probs=58.7
Q ss_pred eecCccccHHHHHHHhcccCC-eeEEEEe-c----CCCcceEEEEecCHHHHHHHHHhh----cCCCCCCeEEeecCCC
Q 023364 175 EKFGEDYTAERLREIFSEFGK-VEDVVIK-S----SKKKGSALVVMATKSAAGAATGSV----CGNLSNPLLVLPLQPA 243 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~-V~~v~i~-~----~k~~g~A~V~F~~~~~A~~A~~~~----~g~~~~pl~v~~~~~~ 243 (283)
......+|+++|+++|+.||. |.+|.|. . ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+.
T Consensus 14 ~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 14 GGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPE 92 (109)
T ss_dssp ECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred eCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCC
Confidence 555667999999999999998 9999985 2 367999999999999999999864 3456899999998763
No 86
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.5e-09 Score=81.86 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=59.3
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEE-EEec----CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDV-VIKS----SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQ 241 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v-~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~ 241 (283)
+|-| ......+|+++|+++|+.||.|..| .|.. +..+|+|||+|.+.++|..|+.... .+.+.+|.|.|..
T Consensus 7 ~l~V--~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 7 GIFI--GNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp EEEE--ECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 4555 4556679999999999999999999 7742 4568999999999999999998544 3458999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 85 ~ 85 (96)
T 1x5t_A 85 K 85 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 87
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.6e-09 Score=83.09 Aligned_cols=73 Identities=21% Similarity=0.163 Sum_probs=60.0
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 16 ~~l~V--~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 16 STVFV--ANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp SCEEE--ESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 34555 56666799999999999999999998853 445899999999999999999854 445589999999765
No 88
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=2.2e-09 Score=83.66 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=57.9
Q ss_pred eeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCC----------CCCCeEEeec
Q 023364 174 WEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGN----------LSNPLLVLPL 240 (283)
Q Consensus 174 Wk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g~----------~~~pl~v~~~ 240 (283)
.......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+....|. .+.||.|.|.
T Consensus 30 V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a 109 (114)
T 1x5o_A 30 ISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFS 109 (114)
T ss_dssp EESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEEC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEcc
Confidence 356666799999999999999999999853 456899999999999999999865443 4678999998
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
.|
T Consensus 110 ~p 111 (114)
T 1x5o_A 110 GP 111 (114)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 89
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.98 E-value=1.7e-09 Score=80.19 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=58.0
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|.+|.+.. ++.+|+|||+|.+.++|..|+ ... .+.+.+|.|.|..+
T Consensus 8 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 8 SIYV--GNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4444 44556789999999999999999998852 456999999999999999999 543 34588999999865
No 90
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.98 E-value=2.2e-09 Score=80.29 Aligned_cols=73 Identities=23% Similarity=0.195 Sum_probs=60.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|. .++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 9 ~~l~V--~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 9 CQIFV--RNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp CEEEE--CSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred cEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34544 5556679999999999999999999885 2557899999999999999999854 445689999999875
No 91
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=2.4e-09 Score=82.12 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=61.1
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..
T Consensus 16 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 16 ATVYV--GGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TEEEE--ECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 45555 55666799999999999999999999843 457899999999999999999863 44668999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 94 ~ 94 (105)
T 1x5u_A 94 A 94 (105)
T ss_dssp T
T ss_pred C
Confidence 5
No 92
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.97 E-value=2.6e-09 Score=80.99 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=56.9
Q ss_pred EEeeecCc-cccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 172 VSWEKFGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~-~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
|-...... .+|+++|+++|++||.|..|.|. +|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 13 l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 13 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp EEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 33356665 79999999999999999999983 799999999999999999864 444589999999865
No 93
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=3e-09 Score=80.89 Aligned_cols=71 Identities=27% Similarity=0.330 Sum_probs=59.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|. +.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 16 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 16 SRLFV--GNLPPDITEEEMRKLFEKYGKAGEVFIH--KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp TEEEE--ESCCTTCCHHHHHHHTSTTCCCSEEEEE--TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHhhcCCeEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 34544 5666679999999999999999999985 45899999999999999999764 445689999999865
No 94
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.97 E-value=1.8e-09 Score=81.63 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=57.6
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.... ...+.+|.|.|..+
T Consensus 8 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 8 GSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 45556799999999999999999999852 4569999999999999999997644 44589999999875
No 95
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.3e-09 Score=82.69 Aligned_cols=69 Identities=28% Similarity=0.279 Sum_probs=58.1
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-|.- ..+|+++|+++|++||.|..|.|. +.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 16 ~~l~V~n----~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 16 NTLYVYG----EDMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp SEEEEEC----SSCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CEEEEcC----CCCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 4566642 379999999999999999999983 67899999999999999999753 445689999999875
No 96
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=82.35 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=59.1
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|. +.+..++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 20 ~~l~V--~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 20 ADVYV--GNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CEEEE--ECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CEEEE--eCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34444 56667799999999999999997 55545678999999999999999999764 445689999999875
No 97
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2.3e-09 Score=80.42 Aligned_cols=72 Identities=25% Similarity=0.316 Sum_probs=58.9
Q ss_pred cceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeec
Q 023364 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (283)
Q Consensus 167 ~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~ 240 (283)
.++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|.
T Consensus 16 ~~~l~V--~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 16 KSTVYV--SNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TTSEEE--ESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCEEEE--ECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 345665 45566799999999999999999999853 456899999999999999999754 4455889999885
No 98
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.1e-09 Score=82.32 Aligned_cols=69 Identities=22% Similarity=0.192 Sum_probs=57.9
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCC-eeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC---CCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGK-VEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG---NLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~-V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g---~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||. |..+.+ .++|+|||+|.+.++|..|+....| +.+.+|.|.|..+
T Consensus 10 ~l~V--~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 10 KLYI--GNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CEEE--ECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 4444 566667999999999999999 777766 3589999999999999999987655 6699999999875
No 99
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.96 E-value=3.4e-09 Score=81.26 Aligned_cols=70 Identities=27% Similarity=0.300 Sum_probs=58.4
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQPA 243 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~~ 243 (283)
++|-| ......+|+++|+++|+.||.|..|.|. +|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+.
T Consensus 12 ~~l~V--~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 12 KVLFV--RNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCEEE--ECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 34554 5566679999999999999999999983 67999999999999999985 34456899999998764
No 100
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=2.6e-09 Score=81.00 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=59.1
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCee-EEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCC----eE
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVE-DVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNP----LL 236 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~-~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~p----l~ 236 (283)
++|-| ......+|+++|+++|+.||.|. +|.|.. ++.+|+|||+|.+.++|..|+....| +.+.+ |.
T Consensus 10 ~~l~V--~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 10 ASLWM--GDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SEEEE--CSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred cEEEE--eCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 34444 55666799999999999999999 998852 45689999999999999999986444 34666 99
Q ss_pred EeecCC
Q 023364 237 VLPLQP 242 (283)
Q Consensus 237 v~~~~~ 242 (283)
|.|..+
T Consensus 88 v~~a~~ 93 (99)
T 2div_A 88 LNYATY 93 (99)
T ss_dssp EEETTC
T ss_pred EeecCC
Confidence 999875
No 101
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2.8e-09 Score=80.90 Aligned_cols=72 Identities=24% Similarity=0.220 Sum_probs=59.3
Q ss_pred EEEeeecCccccHHHHH----HHhcccCCeeEEEEec-CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLR----EIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~----~~f~~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
+|-.......+|+++|+ ++|++||.|.+|.|.. ...+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 44446666779999999 9999999999999953 223899999999999999999864 445689999999875
No 102
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=4.1e-09 Score=82.39 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=60.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC-CCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG-NLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g-~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+....+ +.+.+|.|.|..+
T Consensus 18 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 18 TKIFV--GGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 95 (116)
T ss_dssp SEEEE--ECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTT
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEccc
Confidence 34554 56666799999999999999999999853 45789999999999999999987444 4488999999764
No 103
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=3.1e-09 Score=82.20 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=60.1
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhc--------CCCCCCeE
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVC--------GNLSNPLL 236 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~--------g~~~~pl~ 236 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.... .+.+.+|.
T Consensus 17 ~l~V--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~ 94 (111)
T 1x4h_A 17 TVFI--RNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK 94 (111)
T ss_dssp CEEE--ESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred EEEE--ECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence 4444 55666799999999999999999999852 4579999999999999999998643 45689999
Q ss_pred EeecCC
Q 023364 237 VLPLQP 242 (283)
Q Consensus 237 v~~~~~ 242 (283)
|.|..+
T Consensus 95 v~~a~~ 100 (111)
T 1x4h_A 95 VDLAVT 100 (111)
T ss_dssp EECCCC
T ss_pred EEECCC
Confidence 999865
No 104
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.95 E-value=2.1e-09 Score=83.97 Aligned_cols=72 Identities=19% Similarity=0.160 Sum_probs=59.6
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. ++.+|||||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 27 ~l~V--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 27 NLFI--YHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp CEEE--ESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 4444 55666799999999999999999998852 456899999999999999999764 344589999999875
No 105
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=3.2e-09 Score=81.55 Aligned_cols=72 Identities=25% Similarity=0.280 Sum_probs=59.9
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|.+|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 25 ~l~V--~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 25 ILFV--TGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp EEEE--ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred EEEE--eCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 4444 55666799999999999999999999852 45689999999999999999985 4445689999999764
No 106
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.95 E-value=4.9e-09 Score=81.56 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=60.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 27 ~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 27 MRLYV--GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp EEEEE--ECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 34444 56666799999999999999999999852 45689999999999999999975 455569999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 105 ~ 105 (108)
T 2jrs_A 105 E 105 (108)
T ss_dssp S
T ss_pred c
Confidence 5
No 107
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.95 E-value=9.7e-10 Score=84.25 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=54.1
Q ss_pred cccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCC-CCeEEeecCC
Q 023364 180 DYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLS-NPLLVLPLQP 242 (283)
Q Consensus 180 ~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~-~pl~v~~~~~ 242 (283)
..++++|+++|++||.|.+|.|+. ++++|+|||+|.+.++|..|+... ..+.+ .+|.|.|..|
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 689999999999999999999852 557999999999999999999764 44446 8999999764
No 108
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.95 E-value=9e-10 Score=83.50 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=55.8
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~ 241 (283)
......+|+++|+++|++||+|.++.+. .++|||||+|.|.++|..|+.. ++.+.+.+|.|.+..
T Consensus 13 gNL~~~~te~~L~~lF~q~G~V~~~~l~--~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 13 KNLTAQIDGPTLRTLCMQHGPLVSFHPY--LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp ECCCTTCCCHHHHHHHHHHSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred eCCCccCCHHHHHHHHHhhCCEEEEEEc--CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4455679999999999999999999984 3699999999999999999986 466678899988763
No 109
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=2e-09 Score=84.15 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=61.4
Q ss_pred ccceEEEEeeecCcc---------ccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC--CCCC
Q 023364 166 KEKVLKVSWEKFGED---------YTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN--LSNP 234 (283)
Q Consensus 166 ~~~~lkvkWk~~~~~---------~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~p 234 (283)
..++|.|+.-..... -++++|+++|++||.|..|.|.+...+|+|||+|.+.++|..|+....|. .+.+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 345777766543322 13689999999999999998865567999999999999999999875553 5889
Q ss_pred eEEeecCC
Q 023364 235 LLVLPLQP 242 (283)
Q Consensus 235 l~v~~~~~ 242 (283)
|.|.|..+
T Consensus 94 l~v~~a~~ 101 (112)
T 2dit_A 94 ITAQAWDG 101 (112)
T ss_dssp CEEEECCS
T ss_pred EEEEEeCC
Confidence 99999865
No 110
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1e-09 Score=81.68 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=58.4
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|.+|.|.. +++|+|||+|.+.++|..|+.......+.+|.|.|..+
T Consensus 7 ~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 7 GVFV--GRCTGDMTEDELREFFSQYGDVMDVFIPK-PFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp EEEE--ESCCSSSCHHHHHHHSTTTSCCCEEECCS-SCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHHcCCeeEEEEec-CCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 4444 56667799999999999999999999853 47999999999999999876665555678899998765
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.8e-09 Score=83.08 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=59.7
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCe----eEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKV----EDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V----~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.| ..+.+.+++.+|||||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 26 ~~l~V--~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 26 KVLYL--KNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp SEEEE--ECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 34444 5666779999999999999999 455555677899999999999999999985 444569999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 104 ~ 104 (115)
T 2cpx_A 104 N 104 (115)
T ss_dssp C
T ss_pred C
Confidence 5
No 112
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.94 E-value=2.2e-09 Score=77.28 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=53.6
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEee
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLP 239 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~ 239 (283)
...+..+|+++|+++|+.||+|..|.+.. ++++|+|||+|.+.++|..|+.- .....+.+|.|.|
T Consensus 5 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp ECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred ecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 34456799999999999999999999842 55789999999999999999863 3445588888876
No 113
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.5e-09 Score=82.82 Aligned_cols=69 Identities=16% Similarity=0.087 Sum_probs=57.2
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
|-.......+|+++|+++|+.||.|.+|.+. +.+|+|||+|.+.++|..|+....| +.+.+|.|.|..+
T Consensus 30 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 30 AYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred EEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3335566679999999999999999999985 5789999999999999999976444 4588888888754
No 114
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.7e-09 Score=84.13 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=60.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+.... .+.+.+|.|.|..+
T Consensus 30 ~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 30 KRLHV--SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CEEEE--ESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEE--ECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 34444 56666799999999999999999999953 4469999999999999999998644 45589999999865
No 115
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2.3e-09 Score=80.54 Aligned_cols=73 Identities=25% Similarity=0.244 Sum_probs=59.7
Q ss_pred cceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeec
Q 023364 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (283)
Q Consensus 167 ~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~ 240 (283)
.++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|.
T Consensus 15 ~~~l~v--~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 15 NCCLGV--FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp GGCEEE--ESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCEEEE--ECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 345555 55566799999999999999999999852 456899999999999999999854 4455889999987
Q ss_pred C
Q 023364 241 Q 241 (283)
Q Consensus 241 ~ 241 (283)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 5
No 116
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.93 E-value=2.6e-09 Score=82.73 Aligned_cols=72 Identities=24% Similarity=0.317 Sum_probs=59.7
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+....| +.+.+|.|.|..+
T Consensus 28 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 28 ILFV--TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 4444 56666799999999999999999999852 45689999999999999999986443 4589999999765
No 117
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.93 E-value=1.6e-09 Score=85.34 Aligned_cols=72 Identities=8% Similarity=0.083 Sum_probs=60.3
Q ss_pred EEEeeecCccccHHHHHHHhcccC-CeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFG-KVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG-~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
+|--.......|+++|+++|+.|| .|..|.|...+++|+|||+|.+.++|..|+... ..+.+.+|.|.+...
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 344456667799999999999999 899999855678999999999999999999754 445688999999754
No 118
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.93 E-value=2.1e-09 Score=78.84 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=46.8
Q ss_pred cHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHhhcCC--CCC-CeEE
Q 023364 182 TAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGSVCGN--LSN-PLLV 237 (283)
Q Consensus 182 te~~L~~~f~~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~-pl~v 237 (283)
|+++|+++|++||.|..|.|. +++++|+|||+|.+.++|..|+....|. .+. +|.|
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 789999999999999999985 3567999999999999999999865443 355 6654
No 119
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.93 E-value=2.4e-09 Score=80.47 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=58.8
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..
T Consensus 17 ~~l~v--~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 17 RTVFV--GNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GEEEE--ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEE--ECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 45555 55666799999999999999999999853 456899999999999999999854 44558899998864
No 120
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2.5e-09 Score=81.77 Aligned_cols=72 Identities=24% Similarity=0.188 Sum_probs=59.7
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 10 ~l~V--~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 10 SVFV--GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp CEEE--ESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred EEEE--eCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4444 45556799999999999999999999852 44589999999999999999975 4556699999999865
No 121
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=79.03 Aligned_cols=68 Identities=25% Similarity=0.290 Sum_probs=56.2
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh---cCCCCCCeEEeec
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV---CGNLSNPLLVLPL 240 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~---~g~~~~pl~v~~~ 240 (283)
+|-| ......+|+++|+++|++||.|..|.+.. .+|+|||+|.+.++|..|+... ....+.+|.|.|.
T Consensus 14 ~l~V--~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 14 TLYV--GGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CEEE--ECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred EEEE--cCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4544 55666799999999999999999999853 5899999999999999999854 3345788888875
No 122
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.92 E-value=2.3e-09 Score=81.22 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=58.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe-c---CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK-S---SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~-~---~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..+.++ . ++.+|+|||+|.+.++|..|+.... .+.+.+|.|.+..
T Consensus 16 ~~l~v--~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 16 TIIKV--QNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp EEEEE--ESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 34444 5666779999999999999999876553 2 4568999999999999999997654 4558899999976
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.92 E-value=6.3e-09 Score=82.38 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=60.6
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 36 ~~l~V--~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 36 AKLLV--SNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp EEEEE--ESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 34444 56666799999999999999999999853 45789999999999999999985 4456689999999765
No 124
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.92 E-value=1.9e-09 Score=80.33 Aligned_cols=67 Identities=28% Similarity=0.394 Sum_probs=55.7
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+.||.|..|.|.. ++++|+|||+|.+.+ |..|+... ....+.+|.|.|..+
T Consensus 7 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 7 GNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 44556799999999999999999999852 556999999999999 99999864 445699999999765
No 125
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.91 E-value=2.1e-09 Score=80.82 Aligned_cols=71 Identities=27% Similarity=0.326 Sum_probs=55.8
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|++||.|.+|.|.. +++|||||+|.+.++|..+........+.++.|.+..|
T Consensus 13 ~l~V--~~Lp~~~te~~L~~~F~~~G~i~~v~i~~-~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 13 KVFV--GRCTEDMTAEELQQFFCQYGEVVDVFIPK-PFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHTTTSCEEEEECCS-SCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-
T ss_pred EEEE--eCCCCCCCHHHHHHHHhccCCEEEEEEee-CCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCC
Confidence 4444 55666799999999999999999999853 47999999999999999654443444477888888764
No 126
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=4.6e-09 Score=82.14 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=59.0
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~~ 242 (283)
|-.......+|+++|+++|+.||.|..|.|.. ++.+|||||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 30 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 30 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp EEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 33356667799999999999999999999853 45689999999999999999976 2345588999999875
No 127
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.91 E-value=3.7e-09 Score=82.35 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=57.9
Q ss_pred ceEEEEeeecCc---cccHHHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEE
Q 023364 168 KVLKVSWEKFGE---DYTAERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLV 237 (283)
Q Consensus 168 ~~lkvkWk~~~~---~~te~~L~~~f~~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v 237 (283)
++|.|+--.... .-++++|+++|++||.|.+|.|.. ++++|+|||+|.+.++|..|+..+.| +.+.+|.|
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v 88 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 88 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 456665333221 236899999999999999999853 35699999999999999999987555 45889999
Q ss_pred eecCC
Q 023364 238 LPLQP 242 (283)
Q Consensus 238 ~~~~~ 242 (283)
.+..+
T Consensus 89 ~~a~~ 93 (105)
T 2pe8_A 89 CFYNL 93 (105)
T ss_dssp EECCH
T ss_pred EEcCH
Confidence 98754
No 128
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.91 E-value=4.4e-09 Score=83.36 Aligned_cols=72 Identities=25% Similarity=0.296 Sum_probs=59.7
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|.++|+.||.|..|.|. +++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 24 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 24 ILFV--TGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 4444 4556679999999999999999999985 245699999999999999999975 4455689999999765
No 129
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.91 E-value=4.2e-09 Score=84.70 Aligned_cols=73 Identities=25% Similarity=0.213 Sum_probs=60.8
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..
T Consensus 47 ~~l~V--~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 47 CCLGV--FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp SCBCE--ETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34444 55666799999999999999999999853 467999999999999999999864 44568999999986
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 125 ~ 125 (129)
T 2kxn_B 125 T 125 (129)
T ss_dssp S
T ss_pred C
Confidence 5
No 130
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.91 E-value=3.6e-09 Score=86.53 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=60.0
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. .++|||||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 74 ~~l~V--~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 74 CKVYV--GNLGNNGNKTELERAFGYYGPLRSVWVAR-NPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp CEEEE--ESCCSCCSCHHHHHHHHHHSCEEEEEECS-SSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhhCCEEEEEEee-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 34444 55566789999999999999999999853 3699999999999999999985 4445699999999875
No 131
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.90 E-value=7.7e-09 Score=78.59 Aligned_cols=70 Identities=26% Similarity=0.302 Sum_probs=57.5
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeE--------EEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVED--------VVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNP 234 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~--------v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~p 234 (283)
+|-| ......+|+++|+++|+.||.|.. |.|.. ++.+|+|||+|.+.++|..|+.. +..+.+.+
T Consensus 15 ~l~V--~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 15 TIFV--QGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp EEEE--ECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEE--eCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4444 556667999999999999999998 77742 45689999999999999999975 45566889
Q ss_pred eEEeec
Q 023364 235 LLVLPL 240 (283)
Q Consensus 235 l~v~~~ 240 (283)
|.|.|.
T Consensus 93 l~V~~A 98 (99)
T 2la6_A 93 IKVSFA 98 (99)
T ss_dssp CEEEEC
T ss_pred EEEEec
Confidence 999875
No 132
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.90 E-value=2.6e-09 Score=85.06 Aligned_cols=69 Identities=29% Similarity=0.305 Sum_probs=58.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
++|-|. +..+|+++|+++|+.||.|..|.|. +.+|||||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 40 ~~lfVg----nl~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 40 NTLYVY----GEDMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CEEEEE----CSSCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CEEEEc----CCCCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 456553 2469999999999999999999984 6789999999999999999975 4556699999999875
No 133
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=4.3e-09 Score=78.61 Aligned_cols=69 Identities=22% Similarity=0.199 Sum_probs=57.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|. +|+|||+|.+.++|..|+.... .+.+.+|.|.|..+
T Consensus 10 ~~l~V--~nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 10 WKIFV--GNVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCEEE--ESCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 34544 4555679999999999999999999984 5699999999999999998644 44589999999875
No 134
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=9.4e-09 Score=77.05 Aligned_cols=68 Identities=25% Similarity=0.219 Sum_probs=57.5
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|. +++|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 12 ~l~V--~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 12 KLHV--GNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp EEEE--ESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4444 5666679999999999999999999984 56999999999999999975 4455689999999875
No 135
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=9.1e-09 Score=77.52 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=57.8
Q ss_pred eeecCccccHHHHHHHhcccCCeeEE-EEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 174 WEKFGEDYTAERLREIFSEFGKVEDV-VIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 174 Wk~~~~~~te~~L~~~f~~yG~V~~v-~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
.......+|+++|+++|+.||.|..| .|...+..|.|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 20 IRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp EEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred EEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 35666679999999999999999999 465555667799999999999999975 4445689999999875
No 136
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.90 E-value=6e-09 Score=82.31 Aligned_cols=72 Identities=25% Similarity=0.327 Sum_probs=58.9
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|. ++..+|+|||+|.+.++|..|+ .. ..+.+.+|.|.|..
T Consensus 37 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 37 RSVYV--GNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp TEEEE--EEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35555 4455668999999999999999999884 2567999999999999999999 43 33458999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 137
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.90 E-value=1.8e-09 Score=81.51 Aligned_cols=73 Identities=25% Similarity=0.432 Sum_probs=59.9
Q ss_pred ceEEEEeeecCccccHHHHH----HHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeec
Q 023364 168 KVLKVSWEKFGEDYTAERLR----EIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPL 240 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~----~~f~~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~ 240 (283)
++|-| ......+|+++|+ ++|++||.|..|.|. +++.+|+|||+|.+.++|..|+.... ...+.+|.|.|.
T Consensus 9 ~~l~V--~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 9 HTIYI--NNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp SEEEE--ESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34554 4556679999999 999999999999984 34568999999999999999998644 345899999998
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
.+
T Consensus 87 ~~ 88 (97)
T 1nu4_A 87 KT 88 (97)
T ss_dssp SS
T ss_pred cC
Confidence 75
No 138
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.90 E-value=2.8e-09 Score=82.31 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=52.7
Q ss_pred cHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHhh--cCCCCC-CeEEeecCC
Q 023364 182 TAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGSV--CGNLSN-PLLVLPLQP 242 (283)
Q Consensus 182 te~~L~~~f~~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~-pl~v~~~~~ 242 (283)
|+++|+++|++||.|..|.|. +++++|+|||+|.+.++|..|+... ..+.+. +|.|.|..+
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 789999999999999999985 3567999999999999999999864 445576 999999753
No 139
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=6.7e-09 Score=80.70 Aligned_cols=73 Identities=23% Similarity=0.208 Sum_probs=59.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCee--------EEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVE--------DVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSN 233 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~--------~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~ 233 (283)
++|-| ......+|+++|.++|+.||.|. .|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.
T Consensus 16 ~~l~V--~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 16 SAIYV--QGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CEEEE--ECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEE--cCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 34555 55666799999999999999999 577742 45699999999999999999985 3445689
Q ss_pred CeEEeecCC
Q 023364 234 PLLVLPLQP 242 (283)
Q Consensus 234 pl~v~~~~~ 242 (283)
+|.|.|..+
T Consensus 94 ~l~V~~a~~ 102 (113)
T 2cpe_A 94 KLKVSLARK 102 (113)
T ss_dssp ECEEECSSC
T ss_pred EEEEEECCC
Confidence 999999875
No 140
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.89 E-value=5.3e-09 Score=79.74 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=58.3
Q ss_pred cceEEEEeeecCc-cccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEeecCC
Q 023364 167 EKVLKVSWEKFGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVLPLQP 242 (283)
Q Consensus 167 ~~~lkvkWk~~~~-~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~pl~v~~~~~ 242 (283)
.++|-| ..... .+|+++|+++|+.||.|..|.| .+|+|||+|.+.++|..|+....|. .+.+|.|.|..+
T Consensus 22 ~~~l~V--~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 22 KSRLFI--GNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp TCEEEE--ESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCEEEE--eCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345555 55665 7999999999999999999998 3899999999999999999865443 488999999764
No 141
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.89 E-value=3.7e-09 Score=82.31 Aligned_cols=68 Identities=31% Similarity=0.357 Sum_probs=58.0
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|. +|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 33 ~l~V--~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 33 RLFV--RPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp EEEE--CSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred EEEE--ECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4444 5666679999999999999999999995 899999999999999999864 445689999999875
No 142
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.89 E-value=3e-09 Score=76.73 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=55.1
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh-cCCCCCCeEEeec
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV-CGNLSNPLLVLPL 240 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~-~g~~~~pl~v~~~ 240 (283)
...+..+|+++|+++|++||+|..|.+.. ++++|+|||+|.+.++|..|+... ....+.+|.|.|.
T Consensus 6 ~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 6 GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp ESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 34456789999999999999999999853 456899999999999999999753 4555888888874
No 143
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.88 E-value=5.9e-09 Score=84.43 Aligned_cols=73 Identities=26% Similarity=0.313 Sum_probs=61.1
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 48 ~~l~V--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 48 TSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp CCEEE--ECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34555 55566799999999999999999999852 46799999999999999999975 455668999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 126 ~ 126 (135)
T 2lea_A 126 Y 126 (135)
T ss_dssp C
T ss_pred C
Confidence 5
No 144
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.87 E-value=6.8e-09 Score=85.33 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=60.5
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
+|-.......+|+++|+++|+.||.|..|.|.. ++.+|||||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 72 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 72 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 343356666799999999999999999999842 56799999999999999999975 4446689999999875
No 145
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.87 E-value=5.4e-09 Score=81.07 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=57.7
Q ss_pred ceEEEEeeecCcc-ccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGED-YTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~-~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
++|-| ...... +|+++|+++|++||.|..|.| .+|+|||+|.+.++|..|+....| +.+.+|.|.|..+
T Consensus 28 ~~l~V--~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 28 SRVFI--GNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp SEEEE--CSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred cEEEE--eCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34444 555666 899999999999999999998 589999999999999999976443 4588999999864
No 146
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.87 E-value=6.2e-09 Score=85.67 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=60.8
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|.++|+.||.|..|.|+. +..+|+|||+|.+.++|..|+..+ ..+.+.+|.|.|..
T Consensus 40 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 40 CTLYV--GNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp CEEEE--ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34555 55566799999999999999999999852 446899999999999999999854 44568999999987
Q ss_pred CC
Q 023364 242 PA 243 (283)
Q Consensus 242 ~~ 243 (283)
+.
T Consensus 118 ~~ 119 (156)
T 1h2v_Z 118 GF 119 (156)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 147
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.87 E-value=4.7e-09 Score=81.73 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=59.8
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh-cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV-CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~-~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. +..+|||||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 26 ~~lfV--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 26 CKMFI--GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 103 (109)
T ss_dssp CCEEE--ESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccC
Confidence 34544 45566799999999999999999999853 557999999999999999999763 445578999999765
No 148
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.87 E-value=4.8e-09 Score=79.07 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=59.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..| ...++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 17 ~~l~V--~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 17 RTLLA--KNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GEEEE--ESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 45555 5556678999999999999999888 335778999999999999999999853 445688999999875
No 149
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.86 E-value=6.5e-09 Score=81.41 Aligned_cols=70 Identities=20% Similarity=0.179 Sum_probs=56.9
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeec
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPL 240 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~ 240 (283)
+|-.......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+....| +.+.+|.|.|.
T Consensus 42 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 42 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp EEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 333356667799999999999999999999852 45699999999999999999986444 44778888774
No 150
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=3.1e-09 Score=82.83 Aligned_cols=68 Identities=22% Similarity=0.169 Sum_probs=57.2
Q ss_pred eecCccccHHHHH---HHhcccCCeeEEEEecC-------CCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLR---EIFSEFGKVEDVVIKSS-------KKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~---~~f~~yG~V~~v~i~~~-------k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
......+++++|. ++|++||.|..|.|..+ +.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 21 ~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 21 VGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTT 100 (111)
T ss_dssp EEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCC
T ss_pred ECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccc
Confidence 5566679999999 99999999999998532 3469999999999999999986 3445689999999865
No 151
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.85 E-value=1.4e-09 Score=100.58 Aligned_cols=65 Identities=37% Similarity=0.625 Sum_probs=54.8
Q ss_pred CcccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hhHHHHHHHHHHHHHhccCchhhhHHHH
Q 023364 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD---PDAHDNFQKLKSSYEILKDEKARKLFDD 75 (283)
Q Consensus 6 ~d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~ 75 (283)
.++|.+||+..+ ++..+|+++|+++++.+|||+.+++ ..+...|..|.+||++|+||.+|..||.
T Consensus 382 ~~~y~~lg~~~~-----~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRN-----AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTT-----CCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCcc-----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 489999999997 7889999999999999999998753 2478899999999999999999999996
No 152
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.85 E-value=9.9e-09 Score=82.64 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=61.1
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 43 ~~l~V--~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 43 RNLMV--NYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp SEEEE--ESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45555 56667799999999999999999998852 44699999999999999999985 445668999999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 121 ~ 121 (139)
T 1u6f_A 121 S 121 (139)
T ss_dssp C
T ss_pred C
Confidence 5
No 153
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.4e-08 Score=76.47 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=57.5
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
+|-.......+|+++|+++|+.|| |..|.|.. ++.+|+|||+|.+.++|..|+ ...| +.+.+|.|.|..+
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 17 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 343456666799999999999999 99999852 456999999999999999999 6443 4588999999875
No 154
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.85 E-value=2.9e-09 Score=76.55 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=51.9
Q ss_pred ecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh-cCCCCCCeEEee
Q 023364 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV-CGNLSNPLLVLP 239 (283)
Q Consensus 176 ~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~-~g~~~~pl~v~~ 239 (283)
..+..+|+++|+++|+.||+|.+|.+.. ++++|+|||+|.+.++|..|+... ....+.+|.|.+
T Consensus 6 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 6 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 3455689999999999999999998842 457999999999999999999752 334466776654
No 155
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.84 E-value=6.8e-09 Score=79.79 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=58.7
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|.++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..
T Consensus 30 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 30 GKLLV--SNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEE--ESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 34555 55666799999999999999999998852 456999999999999999999854 44558889998863
No 156
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=3.8e-09 Score=81.06 Aligned_cols=72 Identities=26% Similarity=0.317 Sum_probs=58.6
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 18 ~l~V--~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 18 KLFV--GGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp EECC--BSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccC
Confidence 4444 55566799999999999999999999853 45689999999999999999985 3344588899998765
No 157
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.83 E-value=2.6e-08 Score=76.14 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=56.6
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
|-.......+|+++|+++|+.|| |.+|.|.. ++.+|+|||+|.+.++|..|+ ...| +.+.+|.|.|..+
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 18 AYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp EEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 33355666799999999999998 99998853 456899999999999999999 5443 4588999999875
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.83 E-value=1.5e-08 Score=86.32 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=58.1
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 131 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 131 ASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp ECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred eCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 55556799999999999999999999853 45699999999999999999985 4556699999999765
No 159
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=6e-09 Score=81.20 Aligned_cols=72 Identities=26% Similarity=0.337 Sum_probs=59.1
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+ .. ..+.+.+|.|.|..
T Consensus 26 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 26 RTVFC--MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp TEEEE--ESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 34444 55666799999999999999999999952 457899999999999999999 53 44568899999975
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 160
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.82 E-value=9.4e-09 Score=76.04 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=55.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEee
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLP 239 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~ 239 (283)
++|-| ...+..+|+++|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.+
T Consensus 12 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 12 GKMFV--GGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp TEEEE--ECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34555 55666799999999999999999999852 55699999999999999999965 2234466777765
No 161
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=6.5e-09 Score=79.16 Aligned_cols=73 Identities=22% Similarity=0.197 Sum_probs=57.0
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|.-+....++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 16 ~~l~V--~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 16 KTLVL--SNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp SEEEE--ESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 45555 45566799999999999999983221123567999999999999999999854 445689999999876
No 162
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=6.5e-09 Score=76.57 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=50.8
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEe
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVL 238 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~ 238 (283)
......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+....| +.+.++.+.
T Consensus 11 ~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 11 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp ESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 55667799999999999999999998853 45699999999999999999986433 334444433
No 163
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=1.9e-08 Score=76.43 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=57.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhccc--CCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEF--GKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~y--G~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.| |.|..|.+ .+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 16 ~~l~V--~nLp~~~t~~~l~~~F~~~g~g~v~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 16 KILYV--RNLMLSTSEEMIEKEFNNIKPGAVERVKK----IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CEEEE--ESCCTTCCHHHHHHHHHTTSTTCEEEEEE----CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCcceEEEEE----eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 34444 5556679999999999999 99999987 3789999999999999999853 445588999999875
No 164
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.80 E-value=9e-09 Score=85.76 Aligned_cols=72 Identities=24% Similarity=0.317 Sum_probs=59.7
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|..+|+.||.|..|.|.. +..+|||||+|.+.++|..|+..+.| +.+.+|.|.|..+
T Consensus 74 ~l~V--~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 74 ILFV--TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred EEEE--eCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4444 55666799999999999999999999852 44689999999999999999986444 5689999999765
No 165
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.80 E-value=8.1e-09 Score=78.87 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=57.4
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeec
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~ 240 (283)
++|-| ......+|+++|+++|+.|| |..|.|.. ++.+|+|||+|.+.++|..|+ .. ..+.+.+|.|.|.
T Consensus 20 ~~l~V--~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 20 YTAFL--GNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp CEEEE--SCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred cEEEE--eCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 34444 55566799999999999999 99999842 446999999999999999999 53 4445888999987
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
.+
T Consensus 96 ~~ 97 (100)
T 2j76_E 96 DQ 97 (100)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 166
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.80 E-value=4.5e-09 Score=80.11 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=57.5
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~~~~~ 242 (283)
+|-.......+|+++|+++|+.||.|..+++. .++.+|+|||+|.+.++|..|+. +...+.+.+|.|.|..+
T Consensus 19 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 19 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 44446667779999999999999999884332 26679999999999999999997 22344589999999865
No 167
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=2.9e-08 Score=76.37 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=58.1
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeE-EEEe---cCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVED-VVIK---SSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~-v~i~---~~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~~ 242 (283)
+|.........|+++|+++|+.||.|.+ |.|. +++.+|+|||+|.+.++|..|+.. ...+.+.++.|.+..+
T Consensus 17 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSR 93 (104)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCH
Confidence 4444667778999999999999999998 7664 356799999999999999999976 3344478899988654
No 168
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.79 E-value=1.4e-08 Score=81.39 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=57.2
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEee
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLP 239 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~ 239 (283)
++|-| ......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|
T Consensus 64 ~~l~v--~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 64 RVLYV--GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CEEEE--ECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred cEEEE--EeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34444 56666799999999999999999999842 457999999999999999999753 345578888876
No 169
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.78 E-value=3e-08 Score=77.83 Aligned_cols=66 Identities=15% Similarity=0.043 Sum_probs=52.4
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEee
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLP 239 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~ 239 (283)
+|-.......+|+++|.++|++||.|..|.|..+ |+|||+|.+.++|..|+..+. .+.+.++.|.+
T Consensus 18 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 18 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 3444666677999999999999999999998533 999999999999999998644 34567744433
No 170
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.78 E-value=6.3e-09 Score=80.94 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=51.4
Q ss_pred cHHHHHHHhcccCCeeEEEEecC------CCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeecCC
Q 023364 182 TAERLREIFSEFGKVEDVVIKSS------KKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQP 242 (283)
Q Consensus 182 te~~L~~~f~~yG~V~~v~i~~~------k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~~~ 242 (283)
.+++|++.|++||.|.+|.|... +.+|+|||+|.+.++|.+|+..+.|.. +.+|.|.+..+
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 45799999999999999999531 468999999999999999998765544 88999998643
No 171
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.76 E-value=9.3e-09 Score=81.38 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=52.0
Q ss_pred cHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEeecCC
Q 023364 182 TAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVLPLQP 242 (283)
Q Consensus 182 te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~pl~v~~~~~ 242 (283)
.+++|++.|++||.|.+|.|.....+|+|||+|.+.++|..|+..+.|. .+.+|.|.+..+
T Consensus 30 l~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 3678999999999999999954446899999999999999999876554 589999999753
No 172
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.76 E-value=5e-09 Score=79.96 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=57.1
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.+...+.+.+|.|.+..+
T Consensus 15 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 15 GGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 55566799999999999999999999853 456899999999999999999954556678899888543
No 173
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.76 E-value=2.3e-08 Score=84.67 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=60.1
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
+|-.......+|+++|.++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 90 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 90 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp EEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 333356667799999999999999999999953 55789999999999999999985 4455689999999764
No 174
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.76 E-value=1.3e-08 Score=84.58 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=59.2
Q ss_pred EEEeeecCccccHHHHHHHhcccC--CeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFG--KVEDVVIK----SSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG--~V~~v~i~----~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
+|--......+|+++|+++|+.|| .|..|.|. +++.+|||||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 57 ~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 57 AVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 333355667799999999999999 99999884 2567999999999999999999874 445588999998764
No 175
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.76 E-value=1.6e-08 Score=81.93 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=58.6
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEE--------EEe-cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEE
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDV--------VIK-SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLV 237 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v--------~i~-~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v 237 (283)
+|-| ......+|+++|+.+|+.||.|..| .+. +++.+|||||+|.+.++|..|+.. ...+.+.+|.|
T Consensus 47 ~l~V--~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 47 RIYV--KNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp EEEE--EEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred EEEE--eCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4444 5566679999999999999999863 332 478899999999999999999985 44556899999
Q ss_pred eecCC
Q 023364 238 LPLQP 242 (283)
Q Consensus 238 ~~~~~ 242 (283)
.|..+
T Consensus 125 ~~a~~ 129 (143)
T 3egn_A 125 QFARS 129 (143)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99865
No 176
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.75 E-value=8.9e-09 Score=77.33 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=56.2
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
+|-| ......+|+++|+++|+.||.|..|.++. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.+..
T Consensus 17 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 17 VIKV--QNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEE--ECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4444 55666799999999999999998766632 456899999999999999999854 34457888888753
No 177
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.74 E-value=2e-08 Score=80.52 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=56.4
Q ss_pred eecCccccHHHHHHHhcccCCeeE--EEEec----CCCcceEEEEecCHHHHHHHHHhhcCC------CCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVED--VVIKS----SKKKGSALVVMATKSAAGAATGSVCGN------LSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~--v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~------~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+.||.|.. |.|.. ++.+|||||+|.+. +|..|+....|. .+.+|.|.|..+
T Consensus 29 ~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 29 RNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp CSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred eCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 556667899999999999999966 77742 56799999999999 999999876554 588999999876
No 178
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=9.6e-09 Score=81.51 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=57.2
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeE-EEEe---cCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVED-VVIK---SSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~-v~i~---~~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~~ 242 (283)
+|-.......+|+++|+++|+.||.|.. ++|. +++.+|+|||+|.+.++|..|+.- ...+.+.+|.|.|..+
T Consensus 27 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 27 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp EEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCH
Confidence 4444666677999999999999999987 3443 256799999999999999999972 3445588999998753
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.74 E-value=3.7e-08 Score=80.91 Aligned_cols=70 Identities=26% Similarity=0.420 Sum_probs=57.3
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCC--C---CCCeEEeec
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGN--L---SNPLLVLPL 240 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g~--~---~~pl~v~~~ 240 (283)
+|-| ......+|+++|+++|++||.|..|.+.. +.++|+|||+|.+.++|..|+....|. . +.||.|.|.
T Consensus 97 ~l~v--~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 97 KLFI--GMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred eEEE--cCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 4444 55566799999999999999999999853 456899999999999999999875543 2 389999985
No 180
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1e-08 Score=80.21 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=58.1
Q ss_pred EEeeecCccccHHHHHHHhcccCCe-eEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKV-EDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V-~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~~ 242 (283)
|-.......+|+++|+++|+.||.| ..|.|+. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 18 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTL 93 (114)
T ss_dssp EEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred EEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCH
Confidence 3335666779999999999999999 7888842 55799999999999999999976 2344588999999764
No 181
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.73 E-value=4.3e-08 Score=79.64 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=56.2
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
...+..+|+++|.++|+.||.|.+|.+.. ++.+|+|||+|.+.++|..|+... ....+.++.|.|..+
T Consensus 6 ~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 6 GNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp EEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 33445689999999999999999999852 557899999999999999999754 344588999999765
No 182
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=3.5e-08 Score=73.63 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=56.7
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
|-.......+|+++|+++|+.| .|..|.|.. ++.+|+|||+|.+.++|..|+. ..| +.+.+|.|.|..+
T Consensus 13 l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 13 VKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp EEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred EEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 3335566679999999999999 899998852 5569999999999999999998 444 4478999999765
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.72 E-value=3.4e-08 Score=87.88 Aligned_cols=66 Identities=27% Similarity=0.440 Sum_probs=55.9
Q ss_pred cCccccHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHhh------cCCCCCCeEEeecCC
Q 023364 177 FGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGSV------CGNLSNPLLVLPLQP 242 (283)
Q Consensus 177 ~~~~~te~~L~~~f~~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~A~~~~------~g~~~~pl~v~~~~~ 242 (283)
....+|+++|+++|+.||.|..|.|. +++++|+|||+|.+.++|..|+... .+..+.|+.|.|..+
T Consensus 104 l~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 104 LSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 34568999999999999999999885 2567999999999999999999874 333488999999875
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.72 E-value=4.2e-08 Score=80.23 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=57.8
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~~ 242 (283)
...+..+|+++|+++|+.||.|..|.|.. +.++|+|||+|.+.++|..|+.. ...+.+.+|.|.|..|
T Consensus 93 ~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 93 GGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp EEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 44556799999999999999999999842 55789999999999999999973 3556689999999875
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.72 E-value=2.8e-08 Score=85.93 Aligned_cols=71 Identities=25% Similarity=0.294 Sum_probs=58.2
Q ss_pred eEEEEeeecC-ccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFG-EDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~-~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
+|-| ...+ ..+|+++|+++|+.||.|.+|.|.. .++|+|||+|.+.++|..|+..+ ..+.+.+|.|.|...
T Consensus 6 ~l~V--~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 6 VLMV--YGLDQSKMNCDRVFNVFCLYGNVEKVKFMK-SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp EEEE--ECCCTTTCCHHHHHHHHTTTSCEEEEEECT-TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred EEEE--eCCCcccCCHHHHHHHHHhcCCeEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 4444 3455 5799999999999999999998853 46899999999999999999764 445689999999753
No 186
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.72 E-value=1.5e-08 Score=78.68 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=45.5
Q ss_pred HHHHHHh-cccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeec
Q 023364 184 ERLREIF-SEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPL 240 (283)
Q Consensus 184 ~~L~~~f-~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~ 240 (283)
++|++.| ++||.|.+|.|.. ++++|+|||+|.+.++|..|+....| +.+.+|.|.|.
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 3444555 9999999999953 34699999999999999999987655 45788888764
No 187
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.72 E-value=2.2e-08 Score=86.45 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=57.2
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHhhc--CCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGSVC--GNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~A~~~~~--g~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|+.||.|..|.|.. +.++|+|||+|.+.++|..|+..+. .+.+.+|.|.|..+
T Consensus 109 ~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 109 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 44556799999999999999999998852 4469999999999999999997644 44588999999765
No 188
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=3.2e-08 Score=76.21 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=56.3
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~~ 242 (283)
.+|-| .......|+++|+++|+.||.| .|.|+ +++.+|+|||+|.+.++|..|+.. ...+...+|.|.+..+
T Consensus 16 ~~l~V--~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 16 HCVHM--RGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp CEEEE--ESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 34544 5666678999999999999955 88774 256799999999999999999953 3344478899988654
No 189
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.72 E-value=4.6e-08 Score=94.12 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=59.9
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|..+|+.||.|..|.|+. ++.+|||||+|.+.++|..||..+ ..+.+.+|.|.|..+
T Consensus 104 ~lfV--~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 104 TLFV--ARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred EEEE--eCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 4444 55666799999999999999999998853 557999999999999999999764 444589999999765
No 190
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.5e-08 Score=79.23 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=51.9
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec-------CCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEe
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-------SKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVL 238 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~-------~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~ 238 (283)
++|-| ......+|+++|+++|++||.|. +.++. ++.+|||||+|.+.++|..|+....++-+..+.+.
T Consensus 9 ~~lfV--gnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 9 RKVFV--GGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp CCEEE--ECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CEEEE--cCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 34444 56667799999999999999999 66632 36699999999999999999987644444444443
No 191
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.71 E-value=3.3e-08 Score=80.32 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=56.5
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~ 241 (283)
...+..+|+++|.++|+.||.|..|.+.. +..+|+|||+|.+.++|..|+... ....+++|.|.|..
T Consensus 93 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 93 GDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp ESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 44566789999999999999999998852 456899999999999999999854 34458999999875
No 192
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.70 E-value=5e-08 Score=81.84 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=59.7
Q ss_pred cceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecC
Q 023364 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 167 ~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~ 241 (283)
.++|-| ......+|+++|+++|+.||.|.+|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 13 ~~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 13 LRKLFI--GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGEEEE--ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCEEEE--eCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 345555 56666799999999999999999998853 44689999999999999999976 233457889999875
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 91 ~ 91 (196)
T 1l3k_A 91 S 91 (196)
T ss_dssp C
T ss_pred C
Confidence 4
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.69 E-value=4.4e-08 Score=79.66 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=57.2
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
...+..+|+++|+++|+.||.|.+|.+.. ++.+|+|||+|.+.++|..|+... ....+.+|.|.|..+
T Consensus 8 ~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 8 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 45566799999999999999999998842 456799999999999999999753 445588999999865
No 194
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=6.2e-08 Score=72.85 Aligned_cols=70 Identities=27% Similarity=0.274 Sum_probs=53.8
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~pl~v~~~~~ 242 (283)
+|-.......+|+++|+++|+.||.|.+|++ ......+|||+|.+.++|..|+. ..|. .+.+|.|.|..+
T Consensus 10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~-~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 10 SVFVSGFPRGVDSAQLSEYFLAFGPVASVVM-DKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp EEEEECCCTTCCHHHHHHHGGGTSCEEEEEE-CSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-cCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 3334566677999999999999999999844 32221299999999999999998 5443 478888887653
No 195
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.69 E-value=3.2e-08 Score=76.48 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=56.5
Q ss_pred EEeeecCccccHHHHHHHhcccCC---eeEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGK---VEDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~---V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~~ 242 (283)
|.........|+++|+++|+.||. |..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.+..+
T Consensus 14 l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 14 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp EEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCH
Confidence 333566667899999999999998 89998852 56799999999999999999973 2333467888888654
No 196
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.69 E-value=4.2e-08 Score=80.18 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=57.4
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
...+..+|+++|+++|+.||+|.+|.+.. +.++|+|||+|.+.++|..|+... ....+.+|.|.|..+
T Consensus 9 ~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 9 NYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 55666799999999999999999999842 446899999999999999999754 444588999999875
No 197
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.69 E-value=1.9e-08 Score=82.27 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=56.2
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~~~ 241 (283)
......+|+++|+++|+.||.|.+|.|.. ++++|+|||+|.+.++|..|+.....+.+.++.|.|..
T Consensus 9 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 9 GGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAI 79 (167)
T ss_dssp CSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECC
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEccccccc
Confidence 55566799999999999999999999852 56789999999999999999997555566777777754
No 198
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.68 E-value=2.9e-08 Score=87.50 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=59.8
Q ss_pred EEEeeecCccccHHHHHHHhcccC--CeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFG--KVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG--~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
+|-.......+|+++|+++|+.|| .|..|.|+. ++++|||||+|.+.++|.+||.. ...+.+.+|.|.|..+
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 444455667799999999999999 999998852 56799999999999999999985 4556689999998653
No 199
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.67 E-value=8.2e-08 Score=78.41 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=54.3
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCC--CC--CCeEEeec
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGN--LS--NPLLVLPL 240 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~--~pl~v~~~ 240 (283)
......+|+++|+++|++||.|..|.+.. ++.+|+|||+|.+.++|..|+....|. .+ .||.|.|.
T Consensus 95 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 95 TNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp ESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred eCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 44556799999999999999999998842 445899999999999999999865444 23 89998873
No 200
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=9.4e-08 Score=72.66 Aligned_cols=73 Identities=26% Similarity=0.240 Sum_probs=56.0
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.|+.|.-+.-. +++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 16 ~~l~V--~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 16 KTLFV--KGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SSEEE--ECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEE--eCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 34554 4556679999999999999755443322 3556899999999999999999854 445588999999876
No 201
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.63 E-value=1.2e-07 Score=77.05 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=53.1
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCCC--C--CCeEEeec
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGNL--S--NPLLVLPL 240 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g~~--~--~pl~v~~~ 240 (283)
......+|+++|+++|++||.|..|.+.. +.++|+|||+|.+.++|..|+....|.. + .||.|.|.
T Consensus 94 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 94 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 44555789999999999999999998852 4468999999999999999998644432 3 57888773
No 202
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.63 E-value=2.9e-08 Score=78.35 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=57.7
Q ss_pred EEEeeecCccccHHHHHHHhcccCC---eeEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecCC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGK---VEDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~---V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~~ 242 (283)
+|.........|+++|+++|+.||. |..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.+..+
T Consensus 19 ~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCH
Confidence 3444666777999999999999999 88988852 56799999999999999999972 2334578899988643
No 203
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=1.9e-07 Score=71.48 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=51.7
Q ss_pred eecCccccHHH----HHHHhccc-CCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAER----LREIFSEF-GKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~----L~~~f~~y-G~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
...+...+++. |+++|++| |+|.+|+ .|+|||+|.+.++|.+|+.. ...+++.||.|.+..+
T Consensus 15 ~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 15 YNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred eCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 45566677776 66899999 5999993 29999999999999999986 4667799999999864
No 204
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.62 E-value=5.9e-08 Score=83.24 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=58.7
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhh-cCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSV-CGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~-~g~~~~pl~v~~~~~ 242 (283)
++|-| ...+...|+++|+++|+.||.|..|.|+. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|-..
T Consensus 110 ~~l~V--~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 110 RSVYI--KGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp TEEEE--ECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred CEEEe--cCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45555 44455689999999999999999999852 557999999999999999999753 344578999998653
No 205
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.62 E-value=8.2e-08 Score=78.78 Aligned_cols=68 Identities=22% Similarity=0.426 Sum_probs=55.7
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEec---C---CCcceEEEEecCHHHHHHHHHhhcCCC-----CCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---S---KKKGSALVVMATKSAAGAATGSVCGNL-----SNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~---~---k~~g~A~V~F~~~~~A~~A~~~~~g~~-----~~pl~v~~~~~ 242 (283)
...+..+|+++|+++|++||+|.+|.|.. . +++|+|||+|.+.++|..|+....|.. ..++.+.|..+
T Consensus 9 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~ 87 (175)
T 3nmr_A 9 GQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADS 87 (175)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence 45566799999999999999999998853 2 578999999999999999998654432 67888887654
No 206
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.61 E-value=4.8e-08 Score=72.66 Aligned_cols=65 Identities=12% Similarity=0.244 Sum_probs=55.8
Q ss_pred eecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
......+|+++|+++|++| .|..|.|. +.+|+|||+|.+.++|..|+... ....+.+|.|.|...
T Consensus 11 ~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 11 KNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp ESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred eCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 5566679999999999999 99999883 78999999999999999999864 445689999999753
No 207
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.61 E-value=7e-08 Score=80.92 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=58.0
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh-cCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV-CGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~-~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 106 ~l~V--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 106 KIFV--GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp EEEE--ECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred eEEE--eCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 4444 44556799999999999999999998852 456999999999999999999752 334478999999765
No 208
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.61 E-value=9.1e-08 Score=80.83 Aligned_cols=67 Identities=25% Similarity=0.254 Sum_probs=56.8
Q ss_pred eecCc-cccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 175 EKFGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~-~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
..... .+|+++|+++|+.||.|.+|.|.. .++|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 9 ~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~-~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 9 SNLNPERVTPQSLFILFGVYGDVQRVKILF-NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp ECCCSSSCCHHHHHHHHHTTCCCSEEECST-TCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred eCCCcccCCHHHHHHHHHhcCCEEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 45555 789999999999999999999853 3489999999999999999975 4455689999999764
No 209
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.60 E-value=1.4e-07 Score=84.06 Aligned_cols=73 Identities=26% Similarity=0.475 Sum_probs=59.9
Q ss_pred ceEEEEeeecCccccHHHHH----HHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeec
Q 023364 168 KVLKVSWEKFGEDYTAERLR----EIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPL 240 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~----~~f~~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~ 240 (283)
++|-| ......+|+++|+ ++|+.||.|.+|.|. +++.+|||||+|.+.++|..|+....| +.+++|.|.|.
T Consensus 10 ~~l~V--~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 10 HTIYI--NNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 87 (282)
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence 45555 4556678999966 999999999999985 467899999999999999999976444 45899999997
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
.+
T Consensus 88 ~~ 89 (282)
T 3pgw_A 88 KT 89 (282)
T ss_pred cc
Confidence 54
No 210
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.60 E-value=1.1e-07 Score=80.31 Aligned_cols=71 Identities=21% Similarity=0.172 Sum_probs=58.4
Q ss_pred eEEEEeeecCccccHHHHHHHhcccC-CeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc--CCC-CCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFG-KVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC--GNL-SNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG-~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~--g~~-~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.|| .|..|.|. .+.+|+|||+|.+.++|..|+.... ... +++|.|.|..+
T Consensus 122 ~l~v--~nl~~~~~~~~l~~~f~~~G~~v~~v~i~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 122 TLHL--SNIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEEE--CCCCTTCCHHHHHHHHHHTTSCCCEEEES-STTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHHcCCCceEEEEE-eCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 4444 55566799999999999999 99999984 2358999999999999999998643 344 78999999875
No 211
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.59 E-value=5.8e-08 Score=79.06 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=57.9
Q ss_pred EEEeeecCccccHHHHHHHhcccCC---eeEEEEec---CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEeecC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGK---VEDVVIKS---SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~---V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~~~~ 241 (283)
+|.........|+++|+++|+.||. |..|.|.. ++++|+|||+|.+.++|..|+. +...+.+.+|.|.+..
T Consensus 46 ~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSH 123 (136)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECC
Confidence 4444667778999999999999999 88888852 5679999999999999999997 3344557889998764
No 212
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.59 E-value=2e-07 Score=79.26 Aligned_cols=73 Identities=19% Similarity=0.156 Sum_probs=58.4
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|+.||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.+..
T Consensus 29 ~~l~V--~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 29 SRVYV--GSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp TEEEE--ECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CEEEE--ECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 34555 56666799999999999999999999842 45799999999999999999985 445568899998854
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 107 ~ 107 (216)
T 2qfj_A 107 N 107 (216)
T ss_dssp C
T ss_pred C
Confidence 3
No 213
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.59 E-value=1.3e-07 Score=82.49 Aligned_cols=72 Identities=28% Similarity=0.277 Sum_probs=59.6
Q ss_pred ceEEEEeeecCc-cccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~-~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
++|-| ..... .+|+++|+++|+.||.|..|.|.. .++|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 35 ~~l~V--~nLp~~~~te~~L~~~F~~~G~i~~v~i~~-~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 35 SVLLV--SNLNPERVTPQSLFILFGVYGDVQRVKILF-NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp SEEEE--ESCCTTTCCHHHHHHHHHHHTCEEEEEECC-TTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CEEEE--eCCCcccCCHHHHHHHHHhCCCeEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 35555 56566 799999999999999999999853 3489999999999999999975 4455689999999764
No 214
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.58 E-value=7.1e-08 Score=79.21 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=56.7
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeec
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPL 240 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~ 240 (283)
+|-| ......+|+++|+++|++||.|..|.+.. +.++|+|||+|.+.++|..|+....| +.+.+|.|.|.
T Consensus 96 ~l~v--~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 96 KLFI--GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CEEE--ECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEE--EcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4444 34455789999999999999999999842 44689999999999999999986444 45888888875
No 215
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.58 E-value=1.4e-07 Score=84.11 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=57.4
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC--C-CCCeEEeecC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN--L-SNPLLVLPLQ 241 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~--~-~~pl~v~~~~ 241 (283)
+|-| ......+|+++|+++|+.||.|..|.|.. .++|+|||+|.+.++|..|+....|. . +++|.|.|..
T Consensus 209 ~l~v--~nl~~~~~~~~l~~~F~~~G~i~~v~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 209 ILFL--TNLPEETNELMLSMLFNQFPGFKEVRLVP-GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEE--eCCCCcCCHHHHHHHHHhcCCeEEEEEec-CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 4444 44556799999999999999999999863 34799999999999999999875553 3 7899999964
No 216
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.57 E-value=1.9e-07 Score=68.72 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=51.9
Q ss_pred ceEEEEeeecCccccHHHHHHHhccc----C-------CeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC--CCCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEF----G-------KVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN--LSNP 234 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~y----G-------~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~p 234 (283)
++|-| ......+|+++|+++|+.| | .|.+|.+. +.+|+|||+|.+.++|..|+ ...|. .+.+
T Consensus 7 ~~l~V--~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~--~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 7 RRLYV--GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GEEEE--ESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC--SSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec--CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 44555 4455678999999999999 8 99999884 45899999999999999999 65443 3566
Q ss_pred eEEe
Q 023364 235 LLVL 238 (283)
Q Consensus 235 l~v~ 238 (283)
|.|.
T Consensus 82 l~V~ 85 (87)
T 2hzc_A 82 LKIR 85 (87)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 6654
No 217
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.56 E-value=1.2e-07 Score=88.64 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=52.1
Q ss_pred CccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC-----CC--CeEEeecC
Q 023364 178 GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL-----SN--PLLVLPLQ 241 (283)
Q Consensus 178 ~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~-----~~--pl~v~~~~ 241 (283)
..+.|+++|+++|++||.|..|.|.. .+|||||+|.+.++|.+|+..+.|.. +. ||++.+++
T Consensus 29 ~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 29 GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp GGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 45699999999999999999998843 68999999999999999998865532 23 78888875
No 218
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.56 E-value=1.2e-07 Score=79.59 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=59.7
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~ 241 (283)
++|-| ......+|+++|+++|++||.|..|.+.. +..+|+|||+|.+.++|..|+....| +.+.+|.|.|..
T Consensus 115 ~~l~v--~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 115 HKLFI--GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp CEEEE--ECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34555 45555789999999999999999999852 44599999999999999999986443 458899999987
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
|
T Consensus 193 ~ 193 (198)
T 2yh0_A 193 V 193 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 219
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.56 E-value=1.4e-07 Score=83.87 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=50.8
Q ss_pred cHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--C------------CCCCeEEeecCC
Q 023364 182 TAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--N------------LSNPLLVLPLQP 242 (283)
Q Consensus 182 te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g--~------------~~~pl~v~~~~~ 242 (283)
++++|+.+|++||.|.+|.|+ ..+|+|||+|.+.++|+.|+..+.| + .+.+|.|.|..+
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~--~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYV--ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEE--GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred cHHHHHHHHHccCCEEEEEEE--CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 799999999999999999986 3589999999999999999986433 3 467999999864
No 220
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.56 E-value=1.5e-07 Score=81.14 Aligned_cols=73 Identities=22% Similarity=0.180 Sum_probs=58.9
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQ 241 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~ 241 (283)
.+|-| ......+|+++|+++|++||+|.+|.|.. ++++|+|||+|.+.++|..|+....| ..+.++.+.|..
T Consensus 16 ~tlfV--gnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 16 ASLYV--GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp CEEEE--ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cEEEE--eCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 34544 55667799999999999999999998852 56799999999999999999976443 347788888865
Q ss_pred C
Q 023364 242 P 242 (283)
Q Consensus 242 ~ 242 (283)
+
T Consensus 94 ~ 94 (213)
T 4f02_A 94 R 94 (213)
T ss_dssp C
T ss_pred c
Confidence 3
No 221
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.56 E-value=6.6e-08 Score=76.89 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=56.4
Q ss_pred ceEEEEeeecCcc---ccHHHHHHHhcccCCeeEEEEecC--------CCcceEEEEecCHHHHHHHHHhhcCC--CCCC
Q 023364 168 KVLKVSWEKFGED---YTAERLREIFSEFGKVEDVVIKSS--------KKKGSALVVMATKSAAGAATGSVCGN--LSNP 234 (283)
Q Consensus 168 ~~lkvkWk~~~~~---~te~~L~~~f~~yG~V~~v~i~~~--------k~~g~A~V~F~~~~~A~~A~~~~~g~--~~~p 234 (283)
++|.|+--..... -.+++|++.|++||.|.+|.|... ..+|+|||+|.+.++|..|+..+.|. .+.+
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3566654442222 247899999999999999998521 24699999999999999999876555 4889
Q ss_pred eEEeecC
Q 023364 235 LLVLPLQ 241 (283)
Q Consensus 235 l~v~~~~ 241 (283)
|.|.+..
T Consensus 101 i~v~~~~ 107 (118)
T 3ue2_A 101 VVAEVYD 107 (118)
T ss_dssp CEEEEEC
T ss_pred EEEEEcC
Confidence 9998864
No 222
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.54 E-value=2.1e-07 Score=82.77 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=59.4
Q ss_pred cceEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEeecCC
Q 023364 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (283)
Q Consensus 167 ~~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~~~~ 242 (283)
.++|-| ......+|+++|+++|+.||.|.+|.|. +.+|+|||+|.+.++|..|+... ....+.+|.|.|..+
T Consensus 22 ~~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~--~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 22 RCRLFV--GNLPTDITEEDFKRLFERYGEPSEVFIN--RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp GGEEEE--ESCCTTCCHHHHHHHTGGGCCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEE--ECCCCCCCHHHHHHHHHhcCCEEEEEEe--CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 345555 5566679999999999999999999984 46899999999999999999754 344588999998754
No 223
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.54 E-value=9.8e-08 Score=78.83 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=58.1
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
+|-| ......+|+++|+++|+.||.|..| ...+..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..|
T Consensus 101 ~l~v--~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 101 TLLA--KNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp EEEE--ESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 4444 4555679999999999999999887 33567899999999999999999985 3445588999999865
No 224
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.54 E-value=7.6e-08 Score=78.66 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=55.2
Q ss_pred EEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecCC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~~ 242 (283)
|.........|+++|+++|+.|| |..|.|+. ++++|+|||+|.+.++|..|+.. ...+...+|.|.+..+
T Consensus 49 lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 49 VHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp EECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 33356667799999999999999 66888842 56799999999999999999942 2344577888887654
No 225
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.94 E-value=9.5e-09 Score=80.40 Aligned_cols=68 Identities=25% Similarity=0.292 Sum_probs=56.3
Q ss_pred eecCccccHHHHHHHhcccCCeeE--------EEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeec
Q 023364 175 EKFGEDYTAERLREIFSEFGKVED--------VVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~yG~V~~--------v~i~~----~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~ 240 (283)
......+|+++|+++|+.||.|.. |.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|.
T Consensus 13 ~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 13 QGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 444556899999999999999998 66632 45689999999999999999985 45566899999998
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
.+
T Consensus 93 ~~ 94 (116)
T 2lcw_A 93 TR 94 (116)
Confidence 65
No 226
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=6.5e-08 Score=77.44 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=53.9
Q ss_pred EEEeeecCccccHHHHHHHhcccCCe----eEEEEe---cCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeec
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKV----EDVVIK---SSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPL 240 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V----~~v~i~---~~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~ 240 (283)
+|.........|+++|+++|+.||.| ..|.|+ +++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|...
T Consensus 25 ~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRS 102 (123)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence 45456677789999999999999986 577774 256799999999999999999975 23333556666554
No 227
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.52 E-value=3.2e-07 Score=79.86 Aligned_cols=72 Identities=21% Similarity=0.168 Sum_probs=59.0
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccC-CeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc--CCC-CCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFG-KVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC--GNL-SNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG-~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~--g~~-~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.|| .|..|.+.. +.+|+|||+|.+.++|..|+.... .+. +++|.|.|..+
T Consensus 152 ~~l~V--~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 152 ATLHL--SNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SEEEE--ECCCTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CEEEE--eCCCccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 34544 45566789999999999999 999999842 458999999999999999998643 344 78999999876
No 228
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=2.4e-07 Score=72.49 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=56.0
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecC
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~ 241 (283)
+|.........|+++|+++|+.| .|.+|.|.. ++++|+|||+|.+.++|..|+.. ...+.+.+|.|.+..
T Consensus 18 ~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 18 YVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp EEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 45556777789999999999999 899998852 56799999999999999999953 233446788887654
No 229
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.50 E-value=2.4e-07 Score=80.08 Aligned_cols=68 Identities=24% Similarity=0.199 Sum_probs=53.3
Q ss_pred EEeeecCccccHHHHHHHhcccCCe--eEEEEec--CCCcceEEEEecCHHHHHHHHHhhcCCC------CCCeEEee
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKV--EDVVIKS--SKKKGSALVVMATKSAAGAATGSVCGNL------SNPLLVLP 239 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V--~~v~i~~--~k~~g~A~V~F~~~~~A~~A~~~~~g~~------~~pl~v~~ 239 (283)
|-.......+|+++|+++|+.||.| ..|.|.. ++++|+|||+|.+.++|..|+..+.|.. ..|+.|-|
T Consensus 126 l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 126 LHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 3335666679999999999999999 8888753 3456999999999999999998755542 45666654
No 230
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.47 E-value=2.7e-07 Score=82.70 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=57.5
Q ss_pred eEEEEeeecCcc-ccHHHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeec
Q 023364 169 VLKVSWEKFGED-YTAERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPL 240 (283)
Q Consensus 169 ~lkvkWk~~~~~-~te~~L~~~f~~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~ 240 (283)
+|-|. ..+.. +|+++|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+ ...| +.+.+|.|.|.
T Consensus 212 ~l~v~--nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 212 EIMIR--NLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp EEEEE--EECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEEC
T ss_pred eEEEE--CCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEe
Confidence 45553 34556 89999999999999999999853 456899999999999999999 6433 44899999998
Q ss_pred CC
Q 023364 241 QP 242 (283)
Q Consensus 241 ~~ 242 (283)
.+
T Consensus 289 ~~ 290 (292)
T 2ghp_A 289 DK 290 (292)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 231
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.46 E-value=2.7e-07 Score=82.33 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=56.6
Q ss_pred eecCccc-cHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEeecCC
Q 023364 175 EKFGEDY-TAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (283)
Q Consensus 175 k~~~~~~-te~~L~~~f~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~pl~v~~~~~ 242 (283)
......+ |+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+....| +.+.+|.|.|..+
T Consensus 190 ~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 190 DRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp ECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred ecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 3444555 8999999999999999999842 55699999999999999999986444 4588999999875
No 232
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.46 E-value=3.1e-07 Score=81.97 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=60.3
Q ss_pred ceEEEEeee---------cCccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhh--cCCCC
Q 023364 168 KVLKVSWEK---------FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSV--CGNLS 232 (283)
Q Consensus 168 ~~lkvkWk~---------~~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~ 232 (283)
+.|.|.|.. ....+|+++|+++|+.||.|..|.+.. +..+|+|||+|.+.++|..|+... ....+
T Consensus 85 ~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 85 RELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp EECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred eEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 345666654 345689999999999999999998742 457899999999999999999754 33458
Q ss_pred CCeEEeecCC
Q 023364 233 NPLLVLPLQP 242 (283)
Q Consensus 233 ~pl~v~~~~~ 242 (283)
.+|.|.|..+
T Consensus 165 ~~i~v~~a~~ 174 (284)
T 3smz_A 165 RTLYVHWTDA 174 (284)
T ss_dssp EECEEEECCG
T ss_pred cEEEEEECCC
Confidence 8999999865
No 233
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.46 E-value=2.9e-07 Score=74.00 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=53.7
Q ss_pred EEeeecCccccHHHHHHHhcccCCee--EEEEec---CCCcceEEEEecCHHHHHHHHHhh-cCCCCCCeEEeecC
Q 023364 172 VSWEKFGEDYTAERLREIFSEFGKVE--DVVIKS---SKKKGSALVVMATKSAAGAATGSV-CGNLSNPLLVLPLQ 241 (283)
Q Consensus 172 vkWk~~~~~~te~~L~~~f~~yG~V~--~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~-~g~~~~pl~v~~~~ 241 (283)
|.........|+++|+++|+.|| |. .|.|+. ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.+..
T Consensus 45 lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 45 VRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp EEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 44466777899999999999995 55 787742 567999999999999999999753 33346677776653
No 234
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.39 E-value=2.8e-07 Score=74.64 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=49.6
Q ss_pred CccccHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecC----H-HH---HHHHHH----hhcCCCCCCeEEee
Q 023364 178 GEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMAT----K-SA---AGAATG----SVCGNLSNPLLVLP 239 (283)
Q Consensus 178 ~~~~te~~L~~~f~~yG~V~~v~i~~----~k~~g~A~V~F~~----~-~~---A~~A~~----~~~g~~~~pl~v~~ 239 (283)
...++++.|+++|+.||+|.+|.++. +.++|+|||+|.+ . ++ |..|+. +++...+.+|.|..
T Consensus 15 ~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~l 92 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVIL 92 (136)
T ss_dssp CCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEE
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEE
Confidence 55689999999999999999999852 5679999999996 2 32 788877 45566688888884
No 235
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.37 E-value=5.2e-07 Score=80.79 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=59.9
Q ss_pred ceEEEEeee--------cCccccHHHHHHHhcccC-CeeEEEEec---CCCcceEEEEecCHHHHHHHHHhh--cCCCCC
Q 023364 168 KVLKVSWEK--------FGEDYTAERLREIFSEFG-KVEDVVIKS---SKKKGSALVVMATKSAAGAATGSV--CGNLSN 233 (283)
Q Consensus 168 ~~lkvkWk~--------~~~~~te~~L~~~f~~yG-~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~ 233 (283)
+.|.|.|.. ....+|+++|.++|+.|| .|..|.|.. +..+|+|||+|.+.++|..|+... ....+.
T Consensus 108 ~~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 187 (292)
T 2ghp_A 108 NEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY 187 (292)
T ss_dssp EECEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred cEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 456666655 345699999999999999 999999853 457999999999999999999854 344589
Q ss_pred CeEEeecCCC
Q 023364 234 PLLVLPLQPA 243 (283)
Q Consensus 234 pl~v~~~~~~ 243 (283)
+|.|.|..|.
T Consensus 188 ~l~v~~a~~~ 197 (292)
T 2ghp_A 188 TLVTKVSNPL 197 (292)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999998763
No 236
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.30 E-value=5.9e-07 Score=64.07 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=43.2
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHhcc
Q 023364 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILK 65 (283)
Q Consensus 7 d~Y~vLgv~~~~~~~~a~~~eIkkaYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~ 65 (283)
.-|.||||+++. ..++.++|+++||+|....|||+.. + .-.+..|+.|+++|.
T Consensus 5 EA~~ILgv~~~~--~~a~~~~Ik~~yr~Lm~~nhPDkGG-S---~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 5 ESCKILNIEESK--GDLNMDKINNRFNYLFEVNDKEKGG-S---FYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHTTCCGGG--TCCSHHHHHHHHHHHHHHTCGGGTC-C---HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCc--CcCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHH
Confidence 347899998750 0169999999999999999999963 3 367889999999985
No 237
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.29 E-value=3.9e-07 Score=75.18 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=57.5
Q ss_pred ceEEEEeeecCccccHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEeecCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~~~~~ 242 (283)
++|-| ......+|+++|+++|+.||.|..+.+. .++.+|+|||+|.+.++|..|+. +.....+.+|.|.|..+
T Consensus 14 ~~l~V--~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 14 FNLFI--GNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp EEEEE--ECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred cEEEE--eCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence 34444 5666779999999999999988774432 36789999999999999999995 23445588999999765
No 238
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.24 E-value=2.9e-06 Score=69.45 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=54.8
Q ss_pred ceEEEEeeecCccccHHHHHHHhccc----C-------CeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CCCCC
Q 023364 168 KVLKVSWEKFGEDYTAERLREIFSEF----G-------KVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NLSNP 234 (283)
Q Consensus 168 ~~lkvkWk~~~~~~te~~L~~~f~~y----G-------~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g--~~~~p 234 (283)
++|-| ......+|+++|+++|+.| | .|.++.+ .+.+|+|||+|.+.++|..|+ ...| ..+.+
T Consensus 5 ~~l~V--~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~--~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 5 RRLYV--GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp GEEEE--ESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE--ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred cEEEE--cCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe--cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 34444 4556679999999999999 6 7777766 356899999999999999999 5433 45888
Q ss_pred eEEeecCC
Q 023364 235 LLVLPLQP 242 (283)
Q Consensus 235 l~v~~~~~ 242 (283)
|.|.|..+
T Consensus 80 i~v~~~~~ 87 (172)
T 2g4b_A 80 LKIRRPHD 87 (172)
T ss_dssp CEEECCSS
T ss_pred eeecCCcc
Confidence 99988654
No 239
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.23 E-value=2.8e-06 Score=71.13 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=54.4
Q ss_pred eEEEEeeecCccccHHHHHHHhccc----C-------CeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCe
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEF----G-------KVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPL 235 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~y----G-------~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl 235 (283)
+|-| ......+|+++|+++|+.| | .|.++.+ .+.+|+|||+|.+.++|..|+ .. .-+.+.+|
T Consensus 6 ~l~V--~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 6 RLYV--GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred EEEE--cCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 4444 5566679999999999999 5 5666655 466899999999999999999 43 33458899
Q ss_pred EEeecCC
Q 023364 236 LVLPLQP 242 (283)
Q Consensus 236 ~v~~~~~ 242 (283)
.|.|..+
T Consensus 81 ~v~~~~~ 87 (198)
T 2yh0_A 81 KIRRPHD 87 (198)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9998654
No 240
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.02 E-value=1e-05 Score=69.87 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=52.6
Q ss_pred cccHHHHHHHhcccCCeeEEEEec---C-----CCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEeecC
Q 023364 180 DYTAERLREIFSEFGKVEDVVIKS---S-----KKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQ 241 (283)
Q Consensus 180 ~~te~~L~~~f~~yG~V~~v~i~~---~-----k~~g~A~V~F~~~~~A~~A~~~~~g~~--~~pl~v~~~~ 241 (283)
...+++|.+.|++||.|.+|.|.. . ..+|++||+|.+.++|.+|+..+.|.. +.+|.+.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 356789999999999999999842 2 578999999999999999999865554 8899998864
No 241
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=7.2e-05 Score=59.62 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=51.2
Q ss_pred EEEEeeecCcc-ccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecC-HHHHHHHHHhhc--C--CCCCCeEEeecC
Q 023364 170 LKVSWEKFGED-YTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMAT-KSAAGAATGSVC--G--NLSNPLLVLPLQ 241 (283)
Q Consensus 170 lkvkWk~~~~~-~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~-~~~A~~A~~~~~--g--~~~~pl~v~~~~ 241 (283)
+.|+....+.. .|.++|+++|+.||+|..|.+..+. .+|||+|.+ ..+|..|+.... | .-+..+.+..|.
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~--~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA--KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC--SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 34444665555 8999999999999999999985433 379999999 889999998631 1 124455555554
No 242
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.79 E-value=7.9e-05 Score=56.39 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=52.4
Q ss_pred cceEEEEeeec---Ccccc---HHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEee
Q 023364 167 EKVLKVSWEKF---GEDYT---AERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLP 239 (283)
Q Consensus 167 ~~~lkvkWk~~---~~~~t---e~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~~ 239 (283)
+-||.|.-... ...++ -..|.+.|+.||.|..|.+..+ .+||+|.+.++|.+|+. +.....+..|+|..
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLSLNGKELLNRTITIAL 82 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGGGTTCEETTEEEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHhcCCeEeCCeEEEEEe
Confidence 34677766552 12244 2568899999999999998543 49999999999999997 23344588888887
Q ss_pred cCC
Q 023364 240 LQP 242 (283)
Q Consensus 240 ~~~ 242 (283)
..|
T Consensus 83 kt~ 85 (91)
T 2dnr_A 83 KSP 85 (91)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 243
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.52 E-value=8.4e-05 Score=56.62 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=50.6
Q ss_pred cceEEEEeeecC----ccccH---HHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEe
Q 023364 167 EKVLKVSWEKFG----EDYTA---ERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVL 238 (283)
Q Consensus 167 ~~~lkvkWk~~~----~~~te---~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~-~~~g~~~~pl~v~ 238 (283)
+-||.|.-.... ..+++ ..|.+.|+.||.|..|.+..+ .+||+|.+.++|.+|+. +.....+..|+|.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLDVDGMKVKGRAVKIS 90 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHHGGGSEETTEEEEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHhcCCeeeCCeEEEEe
Confidence 446777654311 11332 457889999999999998644 39999999999999997 2344457788887
Q ss_pred ecC
Q 023364 239 PLQ 241 (283)
Q Consensus 239 ~~~ 241 (283)
+-.
T Consensus 91 ~k~ 93 (95)
T 1ufw_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 643
No 244
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.96 E-value=0.009 Score=57.65 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=37.7
Q ss_pred eEEEEeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh
Q 023364 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 169 ~lkvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
+|.|. +.+ ..++.+|.++|+.||+|.++++ ...+.-||+|||.+.+++..++..
T Consensus 55 sv~v~--~~~-~~~~~~l~~y~~~~g~i~~~~~-~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 55 TVLIH--CPE-KISENKFLKYLSQFGPINNHFF-YESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp EEEEE--ECC-C---CHHHHHHGGGSCCCCEEE-ECSSSEEEEEECC---CCHHHHSS
T ss_pred eEEEE--cCC-CCCHHHHHHHHHhcCCcceEEE-EccCCeEEEEEeCCHHHHHHHHhc
Confidence 57775 333 3899999999999999999999 344567999999999998866443
No 245
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.50 E-value=0.25 Score=37.97 Aligned_cols=63 Identities=13% Similarity=0.028 Sum_probs=52.2
Q ss_pred eecCccccHHHHHHHhcc-c----CCeeEEEEecCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEeecC
Q 023364 175 EKFGEDYTAERLREIFSE-F----GKVEDVVIKSSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~-y----G~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~-~~g~~~~pl~v~~~~ 241 (283)
.......+++.|.-+|.+ - |.|.+|.... +.|+|+|.+...|+..+.. .+-+...||.|.+--
T Consensus 14 ~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 14 RGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp ESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred ECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 445556889999999988 2 5999998732 8999999999999999988 778888999998843
No 246
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.061 Score=41.97 Aligned_cols=63 Identities=6% Similarity=0.061 Sum_probs=49.9
Q ss_pred eecCccccHHHHHHHhccc-----CCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEee
Q 023364 175 EKFGEDYTAERLREIFSEF-----GKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLP 239 (283)
Q Consensus 175 k~~~~~~te~~L~~~f~~y-----G~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~--~g~~~~pl~v~~ 239 (283)
-...+.++...|+.+..+| |.|..|++.+ ..|-|+|+|.+...|-+|.... ..+-+..|++.-
T Consensus 27 ~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 27 FPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp ECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ecCCCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 3455668999999999999 9999999854 4688999999999998888654 333466776654
No 247
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.88 E-value=0.14 Score=38.97 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=37.4
Q ss_pred ecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh
Q 023364 176 KFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV 227 (283)
Q Consensus 176 ~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~ 227 (283)
.....+--.+|..+|+.||.|.-=.| ++ .+|||+|.+.+.|..|+...
T Consensus 22 ~FP~ewKt~DI~~lFs~fggv~I~Wi-dD---TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 22 TFPKEWKTSDLYQLFSAFGNIQISWI-DD---TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp ECCTTCCHHHHHHHHTTTCSCCCEEE-ET---TEEEEECSCHHHHHHHHHHH
T ss_pred eCChhhhhHHHHHHhhccCCEEEEEE-cC---CeEEEEecCHHHHHHHHHhc
Confidence 33444888999999999996655454 32 48999999999999988753
No 248
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=92.61 E-value=0.27 Score=38.69 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=43.7
Q ss_pred cHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEee
Q 023364 182 TAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLP 239 (283)
Q Consensus 182 te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~ 239 (283)
..+.+...|++||.|..... ......-.|.|.+..+|++|+..+--.++.-+.|.+
T Consensus 36 ~~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 36 SASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 91 (119)
T ss_dssp GHHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEE
T ss_pred HHHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEE
Confidence 46778899999999999887 345689999999999999999875444444455544
No 249
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.27 E-value=0.2 Score=38.20 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=35.0
Q ss_pred CccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh
Q 023364 178 GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV 227 (283)
Q Consensus 178 ~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~ 227 (283)
...+--.+|..+|+.||.|.-=.| ++ .+|||+|.+.+.|..|+...
T Consensus 14 P~ewKt~Di~~lFs~fggv~I~Wi-dD---TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 14 PKEWKTSDLYQLFSAFGNIQISWI-DD---TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp CTTCCHHHHHHHTTTSEEEEEEEE-ET---TEEEEEEEEECHHHHHHHHH
T ss_pred ChhhhhHHHHHHHhccCCEEEEEE-cC---CeEEEEecCHHHHHHHHHhc
Confidence 344778899999999994433333 32 48999999999999988763
No 250
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.52 E-value=2.1 Score=32.72 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=46.4
Q ss_pred HHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEeecCC
Q 023364 183 AERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (283)
Q Consensus 183 e~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~--~~g~~~~pl~v~~~~~ 242 (283)
...++.+|..||++...... ++-+...|.|.+.++|..|-.. +..+.+..+++-+.++
T Consensus 24 k~~~e~Lf~~~~~~~tF~~l--kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 24 RAKFESLFRTYDKDTTFQYF--KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHHHHHHHTTCSSCEEEEE--TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred HHHHHHHHHhhCcCcceeec--CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 35779999999999987764 4556789999999999999875 4445577888888774
No 251
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=86.32 E-value=0.73 Score=36.61 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.7
Q ss_pred CCCcceEEEEecCHHHHHHHHHh
Q 023364 204 SKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 204 ~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
.+.+|+|||+|.+.++|++|+..
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~ 32 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQ 32 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHh
Confidence 45799999999999999999965
No 252
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=73.31 E-value=2.3 Score=33.92 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=40.0
Q ss_pred ccHHHHHHHhcccCCeeEEE-Eec-----------C------CCcceEEEEecCHHHHHHHHHhh-cCCCCCCeEEeecC
Q 023364 181 YTAERLREIFSEFGKVEDVV-IKS-----------S------KKKGSALVVMATKSAAGAATGSV-CGNLSNPLLVLPLQ 241 (283)
Q Consensus 181 ~te~~L~~~f~~yG~V~~v~-i~~-----------~------k~~g~A~V~F~~~~~A~~A~~~~-~g~~~~pl~v~~~~ 241 (283)
-....+.+.|++||.|..-+ +.. . ...+...|.|.+..+|.+|+..+ .-+.++=+-|.|..
T Consensus 18 ~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 18 TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECC
Confidence 34567889999999998732 211 0 12466799999999999999752 33334444455543
No 253
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.25 E-value=9.9 Score=36.71 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=38.3
Q ss_pred EeeecCccccHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc
Q 023364 173 SWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC 228 (283)
Q Consensus 173 kWk~~~~~~te~~L~~~f~~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A~~~~~ 228 (283)
-|. ....+...+|.++|+.||.|.-..| + ..+|+|.|.+.+.|..++....
T Consensus 444 ~v~-f~~~~~~~~i~~~fs~fg~v~V~wi-d---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 444 HVT-FPKEWKTSDLYQLFSAFGNIQISWI-D---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEE-CCTTCCHHHHHHHGGGGCCCEEEEC-S---SSEEEEECSCHHHHHHHHHHHT
T ss_pred EEe-CCCCCCHHHHHHHHHhcCCEEEEEE-c---CCeEEEEECCHHHHHHHHHHHH
Confidence 354 2334678999999999997654444 3 3489999999999998887643
No 254
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=68.10 E-value=4.9 Score=31.46 Aligned_cols=38 Identities=11% Similarity=-0.075 Sum_probs=30.1
Q ss_pred CCCcceEEEEecCHHHHHHHHH---hhcCCCCCCeEEeecCC
Q 023364 204 SKKKGSALVVMATKSAAGAATG---SVCGNLSNPLLVLPLQP 242 (283)
Q Consensus 204 ~k~~g~A~V~F~~~~~A~~A~~---~~~g~~~~pl~v~~~~~ 242 (283)
.+-+|+++|+|.+.++|.+|+. +.....+ ++.+.+..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4569999999999999999985 3455556 888887654
No 255
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.64 E-value=16 Score=30.27 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=33.9
Q ss_pred cccHHHHHHHh--cccCCeeEEEEe-cCCCcceEEEEecCHHHH-HHHH
Q 023364 180 DYTAERLREIF--SEFGKVEDVVIK-SSKKKGSALVVMATKSAA-GAAT 224 (283)
Q Consensus 180 ~~te~~L~~~f--~~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A-~~A~ 224 (283)
+.+...|.+.| +.|.++.-..+- .....|+|+|.|.+.-+. .+|+
T Consensus 32 G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 32 GESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 57788899977 999998866653 355789999999987554 4444
No 256
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=33.97 E-value=1.4e+02 Score=21.79 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=40.9
Q ss_pred EEEeeecCccccHHHHHHHhcccCCeeEEEEec------CCCcceEEEEecCHHHHHHHHHh
Q 023364 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS------SKKKGSALVVMATKSAAGAATGS 226 (283)
Q Consensus 171 kvkWk~~~~~~te~~L~~~f~~yG~V~~v~i~~------~k~~g~A~V~F~~~~~A~~A~~~ 226 (283)
||--.....++|++.+.+.++.++.+.-..... ......|+|.|.+.+++..=...
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 343445667899999999999998776554432 22578999999998877665554
No 257
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=26.02 E-value=2e+02 Score=21.18 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 023364 123 KIARQLKEEIERIRAMHENK 142 (283)
Q Consensus 123 ~~~~~l~ee~~r~r~~~~~~ 142 (283)
.++..+++||.|||.+.+.+
T Consensus 68 kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 68 KMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 45778999999999998765
No 258
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.46 E-value=83 Score=31.06 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=38.8
Q ss_pred HHHHHh----cccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEee
Q 023364 185 RLREIF----SEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLP 239 (283)
Q Consensus 185 ~L~~~f----~~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~ 239 (283)
+|..+| +.+|.|..+.+.. .....+++|.|.+.++|..|+.......-.|..+++
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~~~~psa~El 420 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRL 420 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHcCCCcccccc
Confidence 377777 4799999999842 445778999999999999988764222223444443
No 259
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.50 E-value=90 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=29.3
Q ss_pred cceEEEEecCHHHHHHHHHhhcCCCCCCeEEee
Q 023364 207 KGSALVVMATKSAAGAATGSVCGNLSNPLLVLP 239 (283)
Q Consensus 207 ~g~A~V~F~~~~~A~~A~~~~~g~~~~pl~v~~ 239 (283)
-|.|.|.|.+.++...|++.....-++.|.++-
T Consensus 46 dgqamirfqnsdeqrlaiqkllnhnnnklqiei 78 (129)
T 4eyt_A 46 DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEI 78 (129)
T ss_dssp SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEE
T ss_pred cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999988888888888875
Done!