Query 023365
Match_columns 283
No_of_seqs 166 out of 880
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 99.9 1E-24 2.2E-29 203.8 10.5 124 158-281 141-267 (302)
2 PF02338 OTU: OTU-like cystein 99.9 2.8E-22 6E-27 160.4 5.3 81 182-275 1-82 (121)
3 KOG3288 OTU-like cysteine prot 99.5 2.3E-14 5E-19 133.0 5.4 93 175-277 109-202 (307)
4 KOG2605 OTU (ovarian tumor)-li 99.4 2.5E-13 5.4E-18 131.7 4.1 102 165-277 207-311 (371)
5 PF10275 Peptidase_C65: Peptid 99.3 1.3E-11 2.8E-16 111.7 10.2 64 213-276 138-206 (244)
6 KOG3991 Uncharacterized conser 99.0 2.8E-10 6.1E-15 104.6 6.4 65 212-276 154-221 (256)
7 COG5539 Predicted cysteine pro 98.7 3.4E-09 7.4E-14 100.1 2.0 109 166-280 161-277 (306)
8 COG5539 Predicted cysteine pro 98.3 5.1E-07 1.1E-11 85.6 4.2 83 182-277 118-202 (306)
9 PF05415 Peptidase_C36: Beet n 80.7 6.7 0.00014 32.3 6.4 67 181-276 3-71 (104)
10 KOG2606 OTU (ovarian tumor)-li 52.3 10 0.00022 36.9 2.2 27 212-238 187-213 (302)
11 PRK09784 hypothetical protein; 48.6 10 0.00023 36.6 1.7 25 170-194 194-218 (417)
12 PF05412 Peptidase_C33: Equine 33.6 36 0.00078 28.7 2.4 17 182-198 5-21 (108)
13 cd03346 eu_TrpOH Eukaryotic tr 28.7 39 0.00085 32.7 2.1 98 158-270 104-211 (287)
14 cd00361 arom_aa_hydroxylase Bi 27.9 20 0.00043 33.4 -0.0 107 147-267 32-149 (221)
15 cd06845 Bcl-2_like Apoptosis r 27.3 1E+02 0.0022 25.8 4.2 56 211-266 33-100 (144)
16 PRK11913 phhA phenylalanine 4- 22.7 44 0.00095 32.2 1.3 106 147-267 54-171 (275)
17 cd03345 eu_TyrOH Eukaryotic ty 22.6 57 0.0012 31.8 2.0 96 157-267 102-207 (298)
18 smart00337 BCL BCL (B-Cell lym 22.6 70 0.0015 25.5 2.3 28 239-266 33-62 (100)
19 PRK10963 hypothetical protein; 21.8 70 0.0015 29.1 2.4 36 219-259 6-41 (223)
20 TIGR00865 bcl-2 Apoptosis regu 20.4 1.4E+02 0.0031 27.6 4.1 56 212-267 66-132 (213)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1e-24 Score=203.84 Aligned_cols=124 Identities=35% Similarity=0.468 Sum_probs=96.1
Q ss_pred CCCCCcccchhhhhccCCeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhc
Q 023365 158 GGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE 237 (283)
Q Consensus 158 ~~~~~~~~~~~~kl~~~gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle 237 (283)
++.........+++..++|.+++||+||+|||+||+|||..+++..++++.||.+.+++||.++.||+.+-.+.-..++.
T Consensus 141 ~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~ 220 (302)
T KOG2606|consen 141 DAKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSL 220 (302)
T ss_pred chhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccC
Confidence 34444556888999999999999999999999999999999877767665554444444444444444443333333333
Q ss_pred C--CHHHHHHhhcCCCccCCHHHHHHHHHhhCCcEEEEeCC-ceeee
Q 023365 238 G--DFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMS-LLVEL 281 (283)
Q Consensus 238 ~--~fdeYc~~M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s-plve~ 281 (283)
+ +|++||++|++++.|||+|||.|+|++|++||+||+-+ |+.+|
T Consensus 221 ~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~~~~ 267 (302)
T KOG2606|consen 221 GPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPILEY 267 (302)
T ss_pred CHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCceee
Confidence 3 69999999999999999999999999999999999975 77765
No 2
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.86 E-value=2.8e-22 Score=160.38 Aligned_cols=81 Identities=40% Similarity=0.590 Sum_probs=70.9
Q ss_pred CCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHh-hChhhhhhhhcCCHHHHHHhhcCCCccCCHHHHH
Q 023365 182 LADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELL-KRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELL 260 (283)
Q Consensus 182 pgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~-~n~deFE~Fle~~fdeYc~~M~k~gtWGG~iEL~ 260 (283)
||||||||||||+||+...+. .+..|.+||+.+++||+ .|++.|+.|++++ +|+++++|||++||+
T Consensus 1 pgDGnClF~Avs~~l~~~~~~-------~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~ 67 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGG-------SEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQ 67 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SS-------STTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHH
T ss_pred CCCccHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHH
Confidence 799999999999999844210 13579999999999999 9999999998766 999999999999999
Q ss_pred HHHHhhCCcEEEEeC
Q 023365 261 MASHVLKDQINHPHM 275 (283)
Q Consensus 261 ALA~lL~v~I~V~~~ 275 (283)
|+|++|+++|.||+.
T Consensus 68 a~a~~~~~~I~v~~~ 82 (121)
T PF02338_consen 68 ALANVLNRPIIVYSS 82 (121)
T ss_dssp HHHHHHTSEEEEECE
T ss_pred HHHHHhCCeEEEEEc
Confidence 999999999999875
No 3
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.3e-14 Score=133.05 Aligned_cols=93 Identities=23% Similarity=0.242 Sum_probs=82.9
Q ss_pred CeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhh-hhhhcCCHHHHHHhhcCCCcc
Q 023365 175 PFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKET-EWFIEGDFDTYVKEIQQPYVW 253 (283)
Q Consensus 175 gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deF-E~Fle~~fdeYc~~M~k~gtW 253 (283)
-+.++.||.|+.|||+||++.+....+. ...+||+.+++.+..||+.| +++++..-.|||++|.|+..|
T Consensus 109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~----------~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsW 178 (307)
T KOG3288|consen 109 VLSRRVVPDDNSCLFTAIAYVIFKQVSN----------RPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSW 178 (307)
T ss_pred eeEEEeccCCcchhhhhhhhhhcCccCC----------CcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHcccccc
Confidence 4678889999999999999999743211 12689999999999999999 888999999999999999999
Q ss_pred CCHHHHHHHHHhhCCcEEEEeCCc
Q 023365 254 GGEPELLMASHVLKDQINHPHMSL 277 (283)
Q Consensus 254 GG~iEL~ALA~lL~v~I~V~~~sp 277 (283)
||.|||..||+.|++.|.|++++.
T Consensus 179 GGaIElsILS~~ygveI~vvDiqt 202 (307)
T KOG3288|consen 179 GGAIELSILSDYYGVEICVVDIQT 202 (307)
T ss_pred CceEEeeeehhhhceeEEEEecce
Confidence 999999999999999999999874
No 4
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.5e-13 Score=131.66 Aligned_cols=102 Identities=26% Similarity=0.338 Sum_probs=89.0
Q ss_pred cchhhhhccCCeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcCCHHHHH
Q 023365 165 VKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYV 244 (283)
Q Consensus 165 ~~~~~kl~~~gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle~~fdeYc 244 (283)
..........++.++.|..||||+|||+++|++.. .+.|+++|+++++++.++++.|+.|+.++|..|+
T Consensus 207 ~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d-----------~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~ 275 (371)
T KOG2605|consen 207 ERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGD-----------DEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYI 275 (371)
T ss_pred HHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcC-----------HHHHHHHHHHHHHHHhhcccccccccccchhhcc
Confidence 34455556789999999999999999999999963 3689999999999999999999999999999999
Q ss_pred HhhcCCCccCCHHHHHHHHH---hhCCcEEEEeCCc
Q 023365 245 KEIQQPYVWGGEPELLMASH---VLKDQINHPHMSL 277 (283)
Q Consensus 245 ~~M~k~gtWGG~iEL~ALA~---lL~v~I~V~~~sp 277 (283)
+.+++++.||+++|+||+|. ....++.|.+.+.
T Consensus 276 k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~ 311 (371)
T KOG2605|consen 276 KRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKD 311 (371)
T ss_pred cccccCCCCcchHHHhhhhhhhhhccccceeecccc
Confidence 99999999999999999995 5566666666553
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.30 E-value=1.3e-11 Score=111.66 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhChhhhhhhhc----CCHHHHHHh-hcCCCccCCHHHHHHHHHhhCCcEEEEeCC
Q 023365 213 LADELRAQVVDELLKRRKETEWFIE----GDFDTYVKE-IQQPYVWGGEPELLMASHVLKDQINHPHMS 276 (283)
Q Consensus 213 ~h~eLR~~VvdyL~~n~deFE~Fle----~~fdeYc~~-M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s 276 (283)
....+|..++.||+.|+++|++|++ .++++||++ +...+.-.+++.+.|||++|+++|.|+.++
T Consensus 138 iV~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld 206 (244)
T PF10275_consen 138 IVIFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLD 206 (244)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESS
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEec
Confidence 3348999999999999999999997 579999964 677788999999999999999999999876
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.8e-10 Score=104.59 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhChhhhhhhhcC--CHHHHHHhhcCC-CccCCHHHHHHHHHhhCCcEEEEeCC
Q 023365 212 ELADELRAQVVDELLKRRKETEWFIEG--DFDTYVKEIQQP-YVWGGEPELLMASHVLKDQINHPHMS 276 (283)
Q Consensus 212 ~~h~eLR~~VvdyL~~n~deFE~Fle~--~fdeYc~~M~k~-gtWGG~iEL~ALA~lL~v~I~V~~~s 276 (283)
....++|..+..+|++|+|+|++|+++ +.++||++-..| .+-.|+++|.|||+++.+.|.|.+++
T Consensus 154 yiV~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~d 221 (256)
T KOG3991|consen 154 YIVMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVD 221 (256)
T ss_pred HHHHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEec
Confidence 445689999999999999999999975 899999986655 67899999999999999999998875
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.4e-09 Score=100.06 Aligned_cols=109 Identities=16% Similarity=-0.008 Sum_probs=84.9
Q ss_pred chhhhhccCCeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhc-------C
Q 023365 166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE-------G 238 (283)
Q Consensus 166 ~~~~kl~~~gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle-------~ 238 (283)
...+++-...+.-..++|||+|+|.+|++||..+-. .. ++ ..-..+|-.-..|..++...|..|.- .
T Consensus 161 ~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~-~V---dv--~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~ 234 (306)
T COG5539 161 EIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH-VV---DV--DKDSEDRYNSHPYVQRISILFTGIHFDEETLAMV 234 (306)
T ss_pred CcchHHHHHhhhccccCCCceEEEeEeccccceeee-ee---ec--chhHHhhccCChhhhhhhhhhcccccchhhhhcc
Confidence 445555566788889999999999999999976421 11 11 12367777788888777888866642 3
Q ss_pred CHHHHHHhhcCCCccCCHHHHHHHHHhhCCcEEEEeCC-ceee
Q 023365 239 DFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMS-LLVE 280 (283)
Q Consensus 239 ~fdeYc~~M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s-plve 280 (283)
.|++||+.|+-+..||+.+|+++||..|++|+.+++.. |...
T Consensus 235 ~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik 277 (306)
T COG5539 235 LWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIK 277 (306)
T ss_pred hHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCceEE
Confidence 79999999999999999999999999999999998864 5543
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.1e-07 Score=85.59 Aligned_cols=83 Identities=24% Similarity=0.133 Sum_probs=74.4
Q ss_pred CCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhc-CCHHHHHHhhcCCCccC-CHHHH
Q 023365 182 LADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE-GDFDTYVKEIQQPYVWG-GEPEL 259 (283)
Q Consensus 182 pgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle-~~fdeYc~~M~k~gtWG-G~iEL 259 (283)
..|..|+|++.+..++. ....+||..|+..+.+|||.|.+.+. -+--.|+.++.++-.|| |.+|+
T Consensus 118 ~~d~srl~q~~~~~l~~-------------asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~iei 184 (306)
T COG5539 118 QDDNSRLFQAERYSLRD-------------ASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEI 184 (306)
T ss_pred CCchHHHHHHHHhhhhh-------------hhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEE
Confidence 36899999999998852 25689999999999999999988875 48999999999999999 99999
Q ss_pred HHHHHhhCCcEEEEeCCc
Q 023365 260 LMASHVLKDQINHPHMSL 277 (283)
Q Consensus 260 ~ALA~lL~v~I~V~~~sp 277 (283)
.++|+.|++.|.|+++..
T Consensus 185 a~iS~~l~v~i~~Vdv~~ 202 (306)
T COG5539 185 AIISDQLPVRIHVVDVDK 202 (306)
T ss_pred eEeccccceeeeeeecch
Confidence 999999999999998863
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=80.66 E-value=6.7 Score=32.33 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=45.0
Q ss_pred eCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcCCHHHHHHhhcC--CCccCCHHH
Q 023365 181 VLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQ--PYVWGGEPE 258 (283)
Q Consensus 181 IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle~~fdeYc~~M~k--~gtWGG~iE 258 (283)
+..|+|||-=||+..|... -+ .+.+-|+.|. .+.+.||.++++ +.||-|
T Consensus 3 ~sR~NNCLVVAis~~L~~T--------------~e----~l~~~M~An~--------~~i~~y~~W~r~~~~STW~D--- 53 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVT--------------LE----KLDNLMQANV--------STIKKYHTWLRKKRPSTWDD--- 53 (104)
T ss_pred ccCCCCeEeehHHHHhcch--------------HH----HHHHHHHhhH--------HHHHHHHHHHhcCCCCcHHH---
Confidence 4679999999999999531 11 1122233331 137788988765 468865
Q ss_pred HHHHHHhhCCcEEEEeCC
Q 023365 259 LLMASHVLKDQINHPHMS 276 (283)
Q Consensus 259 L~ALA~lL~v~I~V~~~s 276 (283)
..++|+.|++.|.|--.+
T Consensus 54 C~mFA~~LkVsm~vkV~~ 71 (104)
T PF05415_consen 54 CRMFADALKVSMQVKVLS 71 (104)
T ss_pred HHHHHHhheeEEEEEEcC
Confidence 578999999999875443
No 10
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=52.29 E-value=10 Score=36.90 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhChhhhhhhhcC
Q 023365 212 ELADELRAQVVDELLKRRKETEWFIEG 238 (283)
Q Consensus 212 ~~h~eLR~~VvdyL~~n~deFE~Fle~ 238 (283)
...+.||...++||++|.++|.+|+..
T Consensus 187 ~~v~kLR~~~a~Ymr~H~~df~pf~~~ 213 (302)
T KOG2606|consen 187 LSVQKLREETADYMREHVEDFLPFLLD 213 (302)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhcC
Confidence 345689999999999999999999853
No 11
>PRK09784 hypothetical protein; Provisional
Probab=48.58 E-value=10 Score=36.58 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=21.5
Q ss_pred hhccCCeEEEEeCCCCchhhHHHHH
Q 023365 170 IINERPFKVTGVLADGRCLFRAIAH 194 (283)
Q Consensus 170 kl~~~gL~I~~IpgDGNCLFRAIS~ 194 (283)
..+..||+-.+|.|||-||.|||--
T Consensus 194 ~n~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 194 INKTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred hhhhhCceecccCCCchhHHHHHHH
Confidence 3456899999999999999999864
No 12
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=33.61 E-value=36 Score=28.67 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=15.4
Q ss_pred CCCCchhhHHHHHhHhh
Q 023365 182 LADGRCLFRAIAHGACL 198 (283)
Q Consensus 182 pgDGNCLFRAIS~QL~~ 198 (283)
|+||+|=++.|+..++.
T Consensus 5 P~DG~CG~H~i~aI~n~ 21 (108)
T PF05412_consen 5 PGDGSCGWHCIAAIMNH 21 (108)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 78999999999998874
No 13
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=28.70 E-value=39 Score=32.74 Aligned_cols=98 Identities=10% Similarity=0.063 Sum_probs=63.9
Q ss_pred CCCCCcccchhhhhccCCeEEEEeCC--CCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHH-HHHhhChhhh-h
Q 023365 158 GGGDDLNVKRCEIINERPFKVTGVLA--DGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVV-DELLKRRKET-E 233 (283)
Q Consensus 158 ~~~~~~~~~~~~kl~~~gL~I~~Ipg--DGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~Vv-dyL~~n~deF-E 233 (283)
|..|++..-++-+....|+++..|+| ...=+|..+|+..+.. ..+||..-. +|+. .||-| |
T Consensus 104 d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp~--------------t~~IR~~~~~~Ytp-EPDifHE 168 (287)
T cd03346 104 DNIPQLEDVSRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFHC--------------TQYVRHSSDPFYTP-EPDTCHE 168 (287)
T ss_pred CCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCcccc--------------eeeecCccccCCCC-CCchHHH
Confidence 56777777777777778999999998 7788888888877631 234444322 2221 34555 2
Q ss_pred hh-----h-cCCHHHHHHhhcCCCccCCHHHHHHHHHhhCCcE
Q 023365 234 WF-----I-EGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQI 270 (283)
Q Consensus 234 ~F-----l-e~~fdeYc~~M~k~gtWGG~iEL~ALA~lL~v~I 270 (283)
.| + ...|.+|.+.+.+-+-=...-++.-||++|=-.|
T Consensus 169 l~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlYWfTV 211 (287)
T cd03346 169 LLGHVPLLADPSFAQFSQEIGLASLGASDEDIQKLATCYFFTV 211 (287)
T ss_pred HhccchhhcCHHHHHHHHHHHHHhcCCCHHHHHHHhHhhhhhc
Confidence 22 2 2479999998765443346777888888874444
No 14
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=27.94 E-value=20 Score=33.44 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=69.1
Q ss_pred HHhhhhccCC-CCCCCCcccchhhhhccCCeEEEEeCC--CCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHH
Q 023365 147 YEEKISKIDG-GGGGDDLNVKRCEIINERPFKVTGVLA--DGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVD 223 (283)
Q Consensus 147 ~~~ki~~~~~-~~~~~~~~~~~~~kl~~~gL~I~~Ipg--DGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~Vvd 223 (283)
|.+-+....- .|..|+++.-++-+....|+++..|+| ...=+|..+|+..+.. ..+||..-.-
T Consensus 32 yl~gl~~l~l~~d~IPql~~in~~L~~~TGw~~~pV~gli~~~~Ff~~LA~r~Fp~--------------t~~iR~~~~~ 97 (221)
T cd00361 32 YLEGLELLGLPEDRIPQLEDVSEFLKALTGWTLVPVAGLISPRDFFALLAFRVFPV--------------TQYIRHPEEP 97 (221)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCCcCCHHHHHHHHhcCCCce--------------eeeecCcCCC
Confidence 4445555554 367888888788888889999999998 7788888888766531 2344443222
Q ss_pred HHhhChhhh-hhh-----h-cCCHHHHHHhhcCCCccCCH-HHHHHHHHhhC
Q 023365 224 ELLKRRKET-EWF-----I-EGDFDTYVKEIQQPYVWGGE-PELLMASHVLK 267 (283)
Q Consensus 224 yL~~n~deF-E~F-----l-e~~fdeYc~~M~k~gtWGG~-iEL~ALA~lL~ 267 (283)
.-...||.| |.| + ...|.+|.+.+.+-+.=... -++..||++|=
T Consensus 98 ~YtpEPDifHe~~GH~P~L~~p~fAdf~q~~G~~~l~a~~~~~~~~LarlyW 149 (221)
T cd00361 98 DYTPEPDIFHELFGHVPLLADPSFADFSQEYGLASLGASDLEEIEKLARLYW 149 (221)
T ss_pred CCCCCChhHHHHhccchhhcCHHHHHHHHHHHHHHhCcCCHHHHHHHHHhhh
Confidence 222235555 222 2 24799999988766544455 66777888874
No 15
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=27.33 E-value=1e+02 Score=25.77 Aligned_cols=56 Identities=23% Similarity=0.214 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhhhhc----------CCHHHHHHhhcCC-C-ccCCHHHHHHHHHhh
Q 023365 211 RELADELRAQVVDELLKRRKETEWFIE----------GDFDTYVKEIQQP-Y-VWGGEPELLMASHVL 266 (283)
Q Consensus 211 q~~h~eLR~~VvdyL~~n~deFE~Fle----------~~fdeYc~~M~k~-g-tWGG~iEL~ALA~lL 266 (283)
.+.+..||+...+..+++++.|+.+.. ..|.+-.++|-++ + .||-=+-|.+++-.+
T Consensus 33 ~~~~~~Lr~~~dele~~~~~~f~~~~~~l~~~~~~~~~~f~~v~~~lf~dg~inWGRIval~~f~~~l 100 (144)
T cd06845 33 SEVAETLRRVGDELEEKHRRLFENMCRQLNISPDNAYEVFQEVARELFEDGGINWGRIVALFAFGGRL 100 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 467889999999999999998877653 2466777788887 3 799999999887655
No 16
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=22.73 E-value=44 Score=32.16 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=67.4
Q ss_pred HHhhhhccCC-CCCCCCcccchhhhhccCCeEEEEeCC--CCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHH-
Q 023365 147 YEEKISKIDG-GGGGDDLNVKRCEIINERPFKVTGVLA--DGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVV- 222 (283)
Q Consensus 147 ~~~ki~~~~~-~~~~~~~~~~~~~kl~~~gL~I~~Ipg--DGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~Vv- 222 (283)
|-+-+....- .|..|+++.-++-+....|+++..|+| ...=+|..+|+-.+.. ..+||..-.
T Consensus 54 yl~gl~~L~l~~d~IPql~~in~~L~~~TGw~~~pV~Glip~~~Ff~~LA~r~Fp~--------------t~~IR~~~~~ 119 (275)
T PRK11913 54 FLEGLEALGLPKDRIPQLDEINRVLQAATGWQVVPVPGLIPFDVFFELLANRRFPV--------------ATFIRRPEEL 119 (275)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCccCCHHHHHHHHhcCccce--------------eeeecCcccc
Confidence 4444555543 367888888777787889999999998 7888888888876631 234444222
Q ss_pred HHHhhChhhh-hhh-----h-cCCHHHHHHhhcCCCccCCHHHHH-HHHHhhC
Q 023365 223 DELLKRRKET-EWF-----I-EGDFDTYVKEIQQPYVWGGEPELL-MASHVLK 267 (283)
Q Consensus 223 dyL~~n~deF-E~F-----l-e~~fdeYc~~M~k~gtWGG~iEL~-ALA~lL~ 267 (283)
+|+ ..||-| |.| + .-.|.+|.+.+.+-+.=....+.. .||++|=
T Consensus 120 ~Yt-pEPDifHevfGHvPmL~~p~FAdf~q~~G~~~l~a~~~~~~~~LarlyW 171 (275)
T PRK11913 120 DYL-QEPDIFHDVFGHVPLLTNPVFADFMQAYGKLGLRASKEGRLEFLARLYW 171 (275)
T ss_pred CCC-CCCchHHHHhccchhhcCHHHHHHHHHHHHHHhCcChhhHHHHHhhhee
Confidence 222 234555 222 2 236999999887665445555555 7787764
No 17
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=22.64 E-value=57 Score=31.79 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=62.3
Q ss_pred CCCCCCcccchhhhhccCCeEEEEeCC--CCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHH-HHHhhChhhh-
Q 023365 157 GGGGDDLNVKRCEIINERPFKVTGVLA--DGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVV-DELLKRRKET- 232 (283)
Q Consensus 157 ~~~~~~~~~~~~~kl~~~gL~I~~Ipg--DGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~Vv-dyL~~n~deF- 232 (283)
.|..|+++.-+.-+....|+++..|+| ...=+|..+|+-.+.. ..+||..-. +|+. .||-|
T Consensus 102 ~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~R~Fp~--------------t~yIR~~~~~~Ytp-EPDi~H 166 (298)
T cd03345 102 EDRIPQLEDVSEFLKERTGFQLRPVAGLLSARDFLASLAFRVFQC--------------TQYIRHASSPMHSP-EPDCCH 166 (298)
T ss_pred CCCCCCHHHHHHHHHhccCCEEEecCccCCHHHHHHHHhcCcccc--------------cceecCCcccCCCC-CCchHH
Confidence 356777777777777779999999998 7777888888877631 234444222 2222 34545
Q ss_pred hhh-----h-cCCHHHHHHhhcCCCccCCHHHHHHHHHhhC
Q 023365 233 EWF-----I-EGDFDTYVKEIQQPYVWGGEPELLMASHVLK 267 (283)
Q Consensus 233 E~F-----l-e~~fdeYc~~M~k~gtWGG~iEL~ALA~lL~ 267 (283)
|.| + .-.|.+|.+.+.+-+-=+..-++.-||++|=
T Consensus 167 El~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlYW 207 (298)
T cd03345 167 ELLGHVPMLADPTFAQFSQDIGLASLGASDEEIEKLSTLYW 207 (298)
T ss_pred HHhccchhhCCHHHHHHHHHHHHHhcCCCHHHHHHHhHhhh
Confidence 222 2 2479999998766544456667777888773
No 18
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=22.63 E-value=70 Score=25.49 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=22.0
Q ss_pred CHHHHHHhhcCCC--ccCCHHHHHHHHHhh
Q 023365 239 DFDTYVKEIQQPY--VWGGEPELLMASHVL 266 (283)
Q Consensus 239 ~fdeYc~~M~k~g--tWGG~iEL~ALA~lL 266 (283)
.|.+-.++|-++| .||-=+-|.+++-.+
T Consensus 33 ~f~~Va~~lf~dg~inWGRIval~~F~~~l 62 (100)
T smart00337 33 LFGEVATELFSDGNINWGRVVALLSFGGAL 62 (100)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 3666677888888 799999999987655
No 19
>PRK10963 hypothetical protein; Provisional
Probab=21.80 E-value=70 Score=29.09 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=24.4
Q ss_pred HHHHHHHhhChhhhhhhhcCCHHHHHHhhcCCCccCCHHHH
Q 023365 219 AQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPEL 259 (283)
Q Consensus 219 ~~VvdyL~~n~deFE~Fle~~fdeYc~~M~k~gtWGG~iEL 259 (283)
+.|++|+++|||.|... .+.++.|.-|...||-+-|
T Consensus 6 ~~V~~yL~~~PdFf~~h-----~~Ll~~L~lph~~~gaVSL 41 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRN-----ARLVEQMRVPHPVRGTVSL 41 (223)
T ss_pred HHHHHHHHHCchHHhhC-----HHHHHhccCCCCCCCeecH
Confidence 46899999999988533 3555666666556665443
No 20
>TIGR00865 bcl-2 Apoptosis regulator. in artificial membranes at acidic pH, proapoptotic Bcl-2 family proteins (including Bax and Bak) probably induce the mitochondrial permeability transition and cytochrome c release by interacting with permeability transition pores, the most important component for pore fomation of which is VDAC.
Probab=20.45 E-value=1.4e+02 Score=27.55 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhhChhhhhhhhc----------CCHHHHHHhhcCCC-ccCCHHHHHHHHHhhC
Q 023365 212 ELADELRAQVVDELLKRRKETEWFIE----------GDFDTYVKEIQQPY-VWGGEPELLMASHVLK 267 (283)
Q Consensus 212 ~~h~eLR~~VvdyL~~n~deFE~Fle----------~~fdeYc~~M~k~g-tWGG~iEL~ALA~lL~ 267 (283)
+.+..||+...+..++++..|..++. ..|.+-.++|-++| .||-=+-|.+++-.+-
T Consensus 66 ~v~~~Lr~igdEle~~~~~~f~~m~~qL~it~~~a~~~F~~Va~elF~DGiNWGRIVaLfaFgg~La 132 (213)
T TIGR00865 66 AVHQALRRAGDEFERRYRRAFSDMTSQLHITPFTARQSFFQVAAELFRDGVNWGRIVAFFSFGGALC 132 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 57889999999888889999987753 13666777888887 5999999998875543
Done!