BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023366
         (283 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
          Finger Protein 278
          Length = 54

 Score = 34.3 bits (77), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 39 AEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKR 72
           +PY+C  CG+ F   + L  H KQ+H  E+  +
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHK 43


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
          In Zinc Finger Protein 278
          Length = 95

 Score = 33.9 bits (76), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 17 VREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHE 66
          +R +R++R  ++   + G +   +PY+C  CG+ F   + L  H KQ+H 
Sbjct: 43 LRFKRKDRMSYHVRSHDGSV--GKPYICQSCGKGFSRPDHLNGHIKQVHS 90


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
          Domains Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 32.3 bits (72), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIH 65
          PY CGVCG++F     LV H K IH
Sbjct: 37 PYGCGVCGKKFKMKHHLVGHMK-IH 60


>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
          Length = 26

 Score = 32.3 bits (72), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQ 63
          +PYVC  CG+RF  + +L NH + 
Sbjct: 1  KPYVCERCGKRFVQSSQLANHIRH 24


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.0 bits (71), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          PY+C VCG+ F     L+ H ++IH  E+
Sbjct: 12 PYICTVCGKAFTDRSNLIKH-QKIHTGEK 39


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
          Nmr, 25 Structures
          Length = 60

 Score = 31.6 bits (70), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIH 65
          +PY CG+C R F   + L+ H ++IH
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIH 54


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 30.8 bits (68), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +PY C  CG+ F  N  L NH++ IH  E+
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWR-IHTGEK 39


>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
          Zinc Finger Protein 406
          Length = 35

 Score = 30.4 bits (67), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 42 YVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          YVC +C ++F S+ +L +H +++H   Q
Sbjct: 8  YVCALCLKKFVSSIRLRSHIREVHGAAQ 35


>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 28 Homolog
          Length = 47

 Score = 30.4 bits (67), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +PY C  CG+ F  N  L+ H++  H  E+
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEK 40


>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
          Zinc Finger Protein
          Length = 28

 Score = 30.0 bits (66), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFK 62
          PY C VCG+RF    ++  H++
Sbjct: 3  PYSCSVCGKRFSLKHQMETHYR 24


>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger
          Domain: Insights Into Adr1-Uas1 Protein-Dna Recognition
          Length = 30

 Score = 30.0 bits (66), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 42 YVCGVCGRRFYSNEKLVNHFKQIH 65
          Y CG+C R F   + L+ H ++IH
Sbjct: 3  YACGLCNRAFTRRDLLIRHAQKIH 26


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.6 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIH 65
          +PY C  CG+ F  N  L NH ++IH
Sbjct: 11 KPYKCNECGKVFTQNSHLANH-QRIH 35


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Zinc Finger Protein 24
          Length = 72

 Score = 29.6 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIH 65
          +PY C  CG+ F  N  L+NH ++IH
Sbjct: 41 KPYKCLECGKAFSQNSGLINH-QRIH 65


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 29.6 bits (65), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +PYVC  CG+ F  + +LV H ++IH  E+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRH-QRIHTGEK 39


>pdb|4DJ3|A Chain A, Unwinding The Differences Of The Mammalian Period Clock
           Proteins From Crystal Structure To Cellular Function
 pdb|4DJ3|B Chain B, Unwinding The Differences Of The Mammalian Period Clock
           Proteins From Crystal Structure To Cellular Function
          Length = 317

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 38  PAEPYVCGVCG-----RRFYSNEKLVNHFKQIHEREQKK 71
           PA+P+ C +CG     +R YS  +++ +   +H   Q +
Sbjct: 110 PAKPFFCRICGGGDREKRHYSPFRILPYLVHVHSSAQPE 148


>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
          Human Ubi-D4
          Length = 48

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIHEREQK 70
          PY C +CG+R+ +   L  H+   H  E++
Sbjct: 7  PYACDICGKRYKNRPGLSYHYAHSHLAEEE 36


>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          771- 803) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 29.3 bits (64), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +PY+C  CG+ F     L+ H ++IH +++
Sbjct: 11 KPYICAECGKAFTIRSNLIKH-QKIHTKQK 39


>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
 pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
 pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
            Complex With Nadp
 pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
            Complex With Nadp
          Length = 2512

 Score = 29.3 bits (64), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 196  SFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWT 230
            S ++RD+++   K    S+ GKW  RD +  +E++
Sbjct: 1570 SLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFS 1604


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 29.3 bits (64), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +PY C +CG+ F    +L  H +QIH  E+
Sbjct: 11 KPYECSICGKSFTKKSQLHVH-QQIHTGEK 39


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +PY C  CG+ F  N  LV H + IH  E+
Sbjct: 11 KPYKCNECGKVFTQNSHLVRH-RGIHTGEK 39


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
          Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 39 AEPYVCGVCGRRFYSNEKLVNHFKQ 63
          A+P+ CGVC R F  ++ L  H K+
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKR 97


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
          Site)
          Length = 90

 Score = 28.5 bits (62), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +P+ C +CGR+F  +++   H K IH R++
Sbjct: 61 KPFACDICGRKFARSDERKRHTK-IHLRQK 89


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 28.5 bits (62), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHERE 68
          +PY C VCG+ F  +  L  H + +H +E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLR-VHTQE 38


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
          Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
          Site)
          Length = 90

 Score = 28.1 bits (61), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +P+ C +CGR+F  +++   H K IH R++
Sbjct: 61 KPFACDICGRKFARSDERKRHTK-IHLRQK 89


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 28.1 bits (61), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHE 66
          +PY C  C + F   + L  HFK+ H+
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHD 40


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.1 bits (61), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 40 EPYVCGVCGRRFYSNEKLVNH 60
          +PYVC  CG+ F S   L+ H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIH 31


>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          397- 429) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +PY C VCG+ F  +  LV H   +H  E+
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH-HSVHSGER 39


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 28.1 bits (61), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +P+ C +CGR+F  +++   H K IH R++
Sbjct: 61 KPFACDICGRKFARSDERKRHTK-IHLRQK 89


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
          Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
          Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
          Site)
          Length = 90

 Score = 28.1 bits (61), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +P+ C +CGR+F  +++   H K IH R++
Sbjct: 61 KPFACDICGRKFARSDERKRHTK-IHLRQK 89


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 28.1 bits (61), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +P+ C  CG+RF  N +L +H +++H  E+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSH-QRVHTGEK 39


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 28.1 bits (61), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +P+ C +CGR+F  +++   H K IH R++
Sbjct: 61 KPFACDICGRKFARSDERKRHTK-IHLRQK 89


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (Tatazf;clone #6)
          Length = 90

 Score = 28.1 bits (61), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +P+ C +CGR+F +      H K IH R++
Sbjct: 61 KPFACDICGRKFATLHTRTRHTK-IHLRQK 89


>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          425- 457) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          PY C  CG+ F  +  L+ H K+ H RE+
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKR-HFREK 39


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 28.1 bits (61), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +PY CG CG+ F     L  H ++IH  E+
Sbjct: 11 KPYRCGECGKAFAQKANLTQH-QRIHTGEK 39


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 27.7 bits (60), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHERE 68
          +PYVC  CG+ F    +L+ H ++IH  E
Sbjct: 9  KPYVCNECGKAFGLKSQLIIH-ERIHTGE 36


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
          To Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
          To Dna
          Length = 87

 Score = 27.7 bits (60), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHERE 68
          +P+ C +CGR+F  +++   H K IH R+
Sbjct: 60 KPFACDICGRKFARSDERKRHTK-IHLRQ 87


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 27.7 bits (60), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +P+ C  CG+RF  N  L +H +++H  E+
Sbjct: 11 KPFQCEECGKRFTQNSHLHSH-QRVHTGEK 39


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 27.3 bits (59), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +PY+C  CG+ F     L N  ++IH  E+
Sbjct: 11 KPYICNECGKSFIQKSHL-NRHRRIHTGEK 39


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 27.3 bits (59), Expect = 9.5,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          +PY C  CG+ F    KL  H ++IH  E+
Sbjct: 11 KPYKCNECGKAFSQTSKLARH-QRIHTGEK 39


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 27.3 bits (59), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 40 EPYVCGVCGRRFYSNEKLVNHFKQIHERE 68
          +PY C  CG+ F  N +L+ H ++ H  E
Sbjct: 11 KPYECSECGKAFIRNSQLIVH-QRTHSGE 38


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,170,227
Number of Sequences: 62578
Number of extensions: 319760
Number of successful extensions: 954
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 66
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)