Query 023367
Match_columns 283
No_of_seqs 186 out of 421
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 7.7E-43 1.7E-47 324.7 13.5 173 105-280 1-240 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 2.1E-38 4.5E-43 298.0 16.9 201 76-280 1-266 (308)
3 PRK13595 ubiA prenyltransferas 99.9 1.2E-22 2.5E-27 190.9 13.6 166 84-253 8-220 (292)
4 TIGR01476 chlor_syn_BchG bacte 99.9 3.6E-22 7.8E-27 184.4 13.3 157 89-247 1-206 (283)
5 TIGR02056 ChlG chlorophyll syn 99.9 1.7E-21 3.7E-26 183.0 17.7 164 82-247 10-228 (306)
6 PRK09573 (S)-2,3-di-O-geranylg 99.9 2.2E-21 4.7E-26 179.1 16.4 161 88-254 3-206 (279)
7 PRK13105 ubiA prenyltransferas 99.9 1.4E-21 3.1E-26 182.6 15.4 154 88-247 1-205 (282)
8 PRK12882 ubiA prenyltransferas 99.9 3.7E-21 8E-26 177.2 16.6 157 88-250 4-205 (276)
9 PLN00012 chlorophyll synthetas 99.9 3.4E-21 7.4E-26 186.3 16.8 164 82-247 79-297 (375)
10 COG0382 UbiA 4-hydroxybenzoate 99.9 2E-20 4.2E-25 173.6 18.1 165 84-255 9-220 (289)
11 PRK07566 bacteriochlorophyll/c 99.8 2.5E-20 5.4E-25 175.7 16.0 161 85-247 24-234 (314)
12 PRK12884 ubiA prenyltransferas 99.8 5E-20 1.1E-24 169.3 17.4 156 86-247 2-200 (279)
13 PRK12875 ubiA prenyltransferas 99.8 3.8E-20 8.2E-25 172.9 16.8 168 84-256 4-220 (282)
14 PRK12883 ubiA prenyltransferas 99.8 3.7E-20 8.1E-25 170.6 16.2 153 88-247 3-199 (277)
15 PRK06080 1,4-dihydroxy-2-napht 99.8 7.1E-20 1.5E-24 169.6 16.2 165 88-256 3-227 (293)
16 PRK12874 ubiA prenyltransferas 99.8 1.6E-19 3.5E-24 168.9 18.2 163 82-247 2-212 (291)
17 PRK12392 bacteriochlorophyll c 99.8 1.3E-19 2.8E-24 172.7 17.6 163 83-247 7-225 (331)
18 TIGR01475 ubiA_other putative 99.8 1.5E-19 3.2E-24 167.2 17.2 153 88-247 2-203 (282)
19 PRK12847 ubiA 4-hydroxybenzoat 99.8 1.6E-19 3.6E-24 167.3 17.5 158 83-247 2-210 (285)
20 PRK13106 ubiA prenyltransferas 99.8 3.1E-19 6.8E-24 168.0 19.3 158 82-247 9-221 (300)
21 PRK12870 ubiA 4-hydroxybenzoat 99.8 2.7E-19 5.8E-24 167.2 17.3 163 85-254 6-218 (290)
22 PRK13387 1,4-dihydroxy-2-napht 99.8 7.2E-19 1.6E-23 166.4 16.4 66 88-156 3-68 (317)
23 PRK12895 ubiA prenyltransferas 99.8 1.6E-18 3.4E-23 162.4 17.1 159 87-251 2-208 (286)
24 PRK12872 ubiA prenyltransferas 99.8 1.1E-18 2.4E-23 160.4 15.0 155 86-247 2-206 (285)
25 PRK12886 ubiA prenyltransferas 99.8 4.3E-18 9.3E-23 159.3 18.6 159 84-247 4-207 (291)
26 PRK12888 ubiA prenyltransferas 99.8 4E-18 8.6E-23 159.1 17.5 154 88-247 2-204 (284)
27 PRK07419 1,4-dihydroxy-2-napht 99.8 3.2E-18 6.9E-23 161.5 15.9 169 85-256 9-233 (304)
28 PRK12878 ubiA 4-hydroxybenzoat 99.8 1.5E-17 3.2E-22 157.3 19.3 161 82-247 24-237 (314)
29 PRK05951 ubiA prenyltransferas 99.8 1.9E-17 4.2E-22 154.8 18.0 159 86-247 2-216 (296)
30 PRK12848 ubiA 4-hydroxybenzoat 99.8 2.2E-17 4.8E-22 153.2 18.1 164 86-256 3-216 (282)
31 PRK13592 ubiA prenyltransferas 99.8 1E-17 2.2E-22 157.9 15.5 123 132-256 51-227 (299)
32 PRK04375 protoheme IX farnesyl 99.8 1.8E-17 3.9E-22 154.9 16.5 158 85-247 7-212 (296)
33 PRK13362 protoheme IX farnesyl 99.8 2.5E-17 5.5E-22 155.3 17.5 168 84-256 9-224 (306)
34 COG1575 MenA 1,4-dihydroxy-2-n 99.8 2.9E-17 6.3E-22 154.9 17.2 166 86-256 6-235 (303)
35 PRK12869 ubiA protoheme IX far 99.8 1.9E-17 4.1E-22 153.6 15.8 157 87-248 1-205 (279)
36 PLN02922 prenyltransferase 99.8 2.6E-17 5.6E-22 156.0 16.4 169 85-256 12-247 (315)
37 PRK12871 ubiA prenyltransferas 99.7 3.4E-17 7.4E-22 153.9 16.5 159 86-247 3-220 (297)
38 TIGR02235 menA_cyano-plnt 1,4- 99.7 3.8E-17 8.2E-22 152.8 15.9 163 91-256 2-220 (285)
39 TIGR01474 ubiA_proteo 4-hydrox 99.7 1.7E-16 3.6E-21 147.4 17.0 154 89-247 2-205 (281)
40 TIGR01473 cyoE_ctaB protoheme 99.7 1.8E-16 3.8E-21 146.6 15.7 155 89-247 1-203 (280)
41 TIGR00751 menA 1,4-dihydroxy-2 99.7 3.4E-16 7.3E-21 146.4 17.3 157 96-256 1-223 (284)
42 PLN02809 4-hydroxybenzoate non 99.7 4.2E-16 9.2E-21 146.0 17.4 159 86-247 4-211 (289)
43 PRK13591 ubiA prenyltransferas 99.6 1.7E-15 3.8E-20 143.4 13.7 41 216-256 193-238 (307)
44 PRK12873 ubiA prenyltransferas 99.6 1.5E-14 3.2E-19 136.3 16.8 156 86-247 5-215 (294)
45 PRK12876 ubiA prenyltransferas 99.6 2.9E-14 6.2E-19 134.8 17.1 160 86-247 2-217 (300)
46 PF01040 UbiA: UbiA prenyltran 99.5 1.6E-13 3.4E-18 122.0 11.0 140 103-247 4-191 (257)
47 PRK08238 hypothetical protein; 99.2 2.5E-10 5.5E-15 114.0 13.1 153 78-235 181-377 (479)
48 PRK12324 phosphoribose diphosp 99.1 3.6E-09 7.7E-14 100.0 14.7 82 84-169 7-97 (295)
49 PLN02776 prenyltransferase 99.0 1.8E-08 3.8E-13 97.2 16.6 71 94-169 1-80 (341)
50 COG0109 CyoE Polyprenyltransfe 98.9 7.5E-08 1.6E-12 91.5 15.6 153 84-247 14-220 (304)
51 KOG1381 Para-hydroxybenzoate-p 97.9 3.2E-05 7E-10 73.3 7.2 168 79-247 55-269 (353)
52 KOG4581 Predicted membrane pro 97.8 5.7E-05 1.2E-09 70.4 7.8 71 85-156 58-130 (359)
53 KOG1380 Heme A farnesyltransfe 94.3 0.0085 1.8E-07 58.4 -1.1 82 82-169 88-178 (409)
54 TIGR02056 ChlG chlorophyll syn 70.4 97 0.0021 29.4 12.4 18 139-156 195-212 (306)
55 PF05106 Phage_holin_3: Phage 65.4 37 0.0008 27.5 7.3 65 79-153 6-70 (100)
56 PRK12872 ubiA prenyltransferas 57.0 1.6E+02 0.0035 27.0 11.7 20 137-156 171-190 (285)
57 TIGR01475 ubiA_other putative 52.9 1.9E+02 0.0042 26.8 13.3 21 136-156 167-187 (282)
58 PRK07419 1,4-dihydroxy-2-napht 51.8 2.2E+02 0.0049 27.2 13.3 19 138-156 185-203 (304)
59 PRK07566 bacteriochlorophyll/c 50.6 1.5E+02 0.0032 28.2 9.9 17 140-156 202-218 (314)
60 PRK06080 1,4-dihydroxy-2-napht 49.5 2.2E+02 0.0047 26.4 12.8 19 138-156 179-197 (293)
61 PRK13387 1,4-dihydroxy-2-napht 49.3 2.4E+02 0.0053 27.0 11.1 23 134-156 196-218 (317)
62 PRK12888 ubiA prenyltransferas 47.8 2.5E+02 0.0053 26.5 12.5 20 137-156 169-188 (284)
63 COG1575 MenA 1,4-dihydroxy-2-n 46.2 2.9E+02 0.0063 26.9 12.2 34 133-166 182-220 (303)
64 TIGR01476 chlor_syn_BchG bacte 45.9 2.5E+02 0.0054 26.0 12.4 17 140-156 174-190 (283)
65 PRK13592 ubiA prenyltransferas 45.8 48 0.001 32.1 5.7 23 211-233 55-77 (299)
66 PLN00012 chlorophyll synthetas 45.0 3.2E+02 0.007 27.1 12.2 19 138-156 263-281 (375)
67 cd00867 Trans_IPPS Trans-Isopr 41.8 17 0.00038 32.0 1.9 38 210-247 154-201 (236)
68 KOG4016 Synaptic vesicle prote 40.7 3.1E+02 0.0068 25.7 11.8 69 151-219 89-162 (233)
69 PRK12887 ubiA tocopherol phyty 39.4 3.5E+02 0.0075 25.8 10.9 20 137-156 192-211 (308)
70 PLN02922 prenyltransferase 38.8 2.5E+02 0.0053 27.0 9.4 19 138-156 199-217 (315)
71 PRK12878 ubiA 4-hydroxybenzoat 35.7 4E+02 0.0087 25.5 12.6 14 143-156 208-221 (314)
72 PRK09573 (S)-2,3-di-O-geranylg 34.6 3E+02 0.0066 25.4 9.1 20 137-156 164-183 (279)
73 PRK12884 ubiA prenyltransferas 31.0 4.2E+02 0.0091 24.3 12.8 19 138-156 166-184 (279)
74 KOG3533 Inositol 1,4,5-trispho 29.9 92 0.002 36.6 5.4 83 146-238 2221-2317(2706)
75 PRK12886 ubiA prenyltransferas 29.0 1.4E+02 0.0031 28.1 6.0 17 140-156 175-191 (291)
76 PRK12847 ubiA 4-hydroxybenzoat 28.8 4.8E+02 0.01 24.2 12.3 20 137-156 175-194 (285)
77 PRK13591 ubiA prenyltransferas 28.6 3.9E+02 0.0084 26.0 8.9 36 193-233 54-89 (307)
78 COG0600 TauC ABC-type nitrate/ 27.2 4.2E+02 0.0092 24.9 8.7 35 204-238 128-162 (258)
79 PRK04214 rbn ribonuclease BN/u 26.3 3.5E+02 0.0076 26.7 8.4 13 157-169 201-213 (412)
80 TIGR02235 menA_cyano-plnt 1,4- 25.4 5.8E+02 0.013 24.1 13.6 19 138-156 172-190 (285)
81 PRK12871 ubiA prenyltransferas 24.2 6.2E+02 0.013 24.0 13.6 23 134-156 182-204 (297)
82 TIGR00765 yihY_not_rbn YihY fa 24.1 5.5E+02 0.012 23.4 10.6 14 140-153 101-114 (259)
83 PRK12875 ubiA prenyltransferas 23.5 4.5E+02 0.0098 24.8 8.3 19 138-156 176-194 (282)
84 TIGR01474 ubiA_proteo 4-hydrox 22.9 6.2E+02 0.013 23.5 13.6 20 137-156 170-189 (281)
85 TIGR00751 menA 1,4-dihydroxy-2 22.7 6.5E+02 0.014 23.7 12.8 19 138-156 175-193 (284)
86 PF14015 DUF4231: Protein of u 22.3 3.8E+02 0.0082 20.8 6.6 37 80-116 6-42 (112)
87 COG2149 Predicted membrane pro 20.7 5.3E+02 0.012 21.9 8.8 28 132-159 61-93 (120)
88 PRK12874 ubiA prenyltransferas 20.7 7.2E+02 0.016 23.4 9.5 22 135-156 175-196 (291)
89 cd00385 Isoprenoid_Biosyn_C1 I 20.3 57 0.0012 27.2 1.4 34 212-245 150-185 (243)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=7.7e-43 Score=324.73 Aligned_cols=173 Identities=71% Similarity=1.129 Sum_probs=163.8
Q ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----------------------------
Q 023367 105 LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------------------------- 156 (283)
Q Consensus 105 l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------------------------- 156 (283)
+++++.+++|+++.+|+++.++.++++++++|+|||+|++|+|||||+||||
T Consensus 1 l~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~l 80 (280)
T PLN02878 1 LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIM 80 (280)
T ss_pred CchhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3677889999999899988899999999999999999999999999999999
Q ss_pred ------------------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchHHHH
Q 023367 157 ------------------------------LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIF 206 (283)
Q Consensus 157 ------------------------------iPplRlKr~pllaal~Il~v~a~iv~lg~~l~~~t~~~g~p~~~~~~v~~ 206 (283)
+||+||||+++++++|+++++++++++|+|+|++++++|+|..+++++++
T Consensus 81 g~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~ 160 (280)
T PLN02878 81 SFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIF 160 (280)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHH
Confidence 69999999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh----hccccccccchhhhhhhhcce
Q 023367 207 ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST----GSSLYCCNFSWSNVSLCLEQT 277 (283)
Q Consensus 207 lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~----g~~~~~~~~~~~~~~~~~gh~ 277 (283)
.++|+++|+++||++||+||+||||++|+||+|+++|+|++ +++.++|++ |+ +++..|+|++|+.||+
T Consensus 161 ~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~---~~~~~~~~~~~~~~h~ 237 (280)
T PLN02878 161 ATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGA---SSSFLWSKIITVLGHG 237 (280)
T ss_pred HHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 889999996 66 8889999999999999
Q ss_pred eee
Q 023367 278 YHR 280 (283)
Q Consensus 278 ~~~ 280 (283)
+++
T Consensus 238 ~l~ 240 (280)
T PLN02878 238 ILA 240 (280)
T ss_pred HHH
Confidence 875
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=2.1e-38 Score=298.04 Aligned_cols=201 Identities=40% Similarity=0.650 Sum_probs=175.9
Q ss_pred CCCCchhhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCCh-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 023367 76 KPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISP-LFFTGVLEAIAAALMMNIYIVGLNQLSDIEI 154 (283)
Q Consensus 76 ~~~~~~~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~-~~~~~lL~~lla~l~~n~~~ngINDyfD~EI 154 (283)
.|++.++++++.+++|||++||||++|+.++++.++++|.+...+... ..+..++.+++++.++|+|+|++|||||+|+
T Consensus 1 ~~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~i 80 (308)
T PRK12887 1 LPKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEI 80 (308)
T ss_pred CCcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 378999999999999999999999999999999999988654443222 2466667789999999999999999999999
Q ss_pred cc-------------------------------------------------------cccchhhHHHHHHHHHHHHHHHH
Q 023367 155 DK-------------------------------------------------------LPLLRWKRFAVAAAMCILAVRAV 179 (283)
Q Consensus 155 Dk-------------------------------------------------------iPplRlKr~pllaal~Il~v~a~ 179 (283)
|| .||.|+||.|+..++|+..+++.
T Consensus 81 D~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~ 160 (308)
T PRK12887 81 DRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGV 160 (308)
T ss_pred HhcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHH
Confidence 98 89999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHH
Q 023367 180 VVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYF 254 (283)
Q Consensus 180 iv~lg~~l~~~t~~~g~p~~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY 254 (283)
++++|+|++.+. ..+++...++.++++++++++++++|+++||+||+||||+.|+||+|+++|+|++ +++.++|
T Consensus 161 i~~~g~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y 239 (308)
T PRK12887 161 IVNLGLFLHFQW-LLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACY 239 (308)
T ss_pred HHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHH
Confidence 999999988765 3455556777888889999999999999999999999999999999999999999 5888888
Q ss_pred Hh----hccccccccchhhhhhhhcceeee
Q 023367 255 ST----GSSLYCCNFSWSNVSLCLEQTYHR 280 (283)
Q Consensus 255 ~~----g~~~~~~~~~~~~~~~~~gh~~~~ 280 (283)
++ |+ .....+.+..++.||++++
T Consensus 240 ~~~i~~~~---~~~~~~~~~~~~~~~~~~~ 266 (308)
T PRK12887 240 LGMIAVGL---LSLPTVNPAFLIVSHLILL 266 (308)
T ss_pred HHHHHHHH---HHhhhHHHHHHHHHHHHHH
Confidence 88 34 5677889999999998864
No 3
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.89 E-value=1.2e-22 Score=190.93 Aligned_cols=166 Identities=22% Similarity=0.221 Sum_probs=105.9
Q ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (283)
Q Consensus 84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------- 156 (283)
....++.+++.+||.+|+.+..++.+|+..+.. ..|+.+.. ++..+..++..|.+.|++|||||+|+|+
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~ 83 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH-LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG 83 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence 456778889999999999999999999977632 22322222 2234557777899999999999999999
Q ss_pred cccchhhHHHHHHH--HHHHH-----H-HHHHH-----------HHHHHHHHH--HhhhcCCCC----------------
Q 023367 157 LPLLRWKRFAVAAA--MCILA-----V-RAVVV-----------QLAFYLHMQ--THVYRRPAV---------------- 199 (283)
Q Consensus 157 iPplRlKr~pllaa--l~Il~-----v-~a~iv-----------~lg~~l~~~--t~~~g~p~~---------------- 199 (283)
+|.+|+++...... .+.+. + .+..+ .+..+.|.. .-++.+|..
T Consensus 84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~~~~~ 163 (292)
T PRK13595 84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPLALPA 163 (292)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHHHHHH
Confidence 88888876642221 11110 0 00000 011111210 001222221
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHH
Q 023367 200 ---FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLY 253 (283)
Q Consensus 200 ---~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~a 253 (283)
+....+.......+|++++|++||+||+||||+.|+||+|+++|+|++..++..
T Consensus 164 ~~~g~~~~~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~ 220 (292)
T PRK13595 164 LALGAPVPWPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALA 220 (292)
T ss_pred HHcCCcchHHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHH
Confidence 111111112334577899999999999999999999999999999999444444
No 4
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.88 E-value=3.6e-22 Score=184.42 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=102.6
Q ss_pred HHhhhhcccchhHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cccc
Q 023367 89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (283)
Q Consensus 89 ~a~~~l~RPht~iga~l~vl~g~llA~~~~~~-~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------iPpl 160 (283)
++|+|++||+|+..+.+++++|+++|...... ++. ...++.+++++.++++++|.+|||||+|+|+ +|++
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 47899999999999999999999887322121 222 2234446778889999999999999999999 7888
Q ss_pred hhhHHHHHHHHHHHHHHHHHH----------HH---HHH-HHHHHh----hhcCCCCcc---------------------
Q 023367 161 RWKRFAVAAAMCILAVRAVVV----------QL---AFY-LHMQTH----VYRRPAVFS--------------------- 201 (283)
Q Consensus 161 RlKr~pllaal~Il~v~a~iv----------~l---g~~-l~~~t~----~~g~p~~~~--------------------- 201 (283)
+++.........++.+.++++ .+ +.. .+.++. ++.++..++
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~ 158 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAP 158 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence 887665443332222211111 00 000 001111 111111111
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 202 --KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 202 --~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
...++.....++++.++++.||+||+||||+.|++|+|+++|+|++
T Consensus 159 ~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a 206 (283)
T TIGR01476 159 LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRA 206 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHH
Confidence 1112223344466778999999999999999999999999999999
No 5
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.88 E-value=1.7e-21 Score=182.97 Aligned_cols=164 Identities=18% Similarity=0.229 Sum_probs=107.7
Q ss_pred hhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----
Q 023367 82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL-FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---- 156 (283)
Q Consensus 82 ~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~-~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---- 156 (283)
...++++++|+|++||+|+..+.+++++|+..+ +. .++... ....++.+++++.++++++|.+|||||+|+|+
T Consensus 10 ~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~-~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~ 87 (306)
T TIGR02056 10 PGETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GN-FHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP 87 (306)
T ss_pred ccchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC
Confidence 356778899999999999999999999999853 21 122211 11223335677788999999999999999999
Q ss_pred ---cccchhhHHHHHHHHHHHHHHH----HH------------HHHH------HHHHHH-HhhhcCC-CC----------
Q 023367 157 ---LPLLRWKRFAVAAAMCILAVRA----VV------------VQLA------FYLHMQ-THVYRRP-AV---------- 199 (283)
Q Consensus 157 ---iPplRlKr~pllaal~Il~v~a----~i------------v~lg------~~l~~~-t~~~g~p-~~---------- 199 (283)
+|++|++.........++...+ +. +.++ .+.|.. .+.+|+. ..
T Consensus 88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~ 167 (306)
T TIGR02056 88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYI 167 (306)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHH
Confidence 7888887665433222211111 00 1111 112210 0111111 01
Q ss_pred -------------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 200 -------------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 200 -------------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
++...+++...+++++.++++.||++|+|||++.|+||+|+++|+|++
T Consensus 168 ~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a 228 (306)
T TIGR02056 168 ALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETA 228 (306)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHH
Confidence 112223444555678889999999999999999999999999999998
No 6
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.87 E-value=2.2e-21 Score=179.10 Aligned_cols=161 Identities=20% Similarity=0.269 Sum_probs=109.3
Q ss_pred HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cccc
Q 023367 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (283)
Q Consensus 88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------iPpl 160 (283)
+++|+|++|||+++++.++++.|.++|.+... ++ ..++.++++++++.+++|.+|||+|+|+|+ +|++
T Consensus 3 ~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~--~~---~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG 77 (279)
T PRK09573 3 IKAYFELIRPKNCIGASIGAIIGYLIASNFKI--DL---KGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSG 77 (279)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHccCCc--ch---HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCC
Confidence 68899999999999999999999998844222 22 122335668888999999999999999999 8999
Q ss_pred hhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhcCCCCc---------------------chHH
Q 023367 161 RWKRFAVAAAMCILAVRAVV---------------VQLAFYLHMQTHVYRRPAVF---------------------SKPL 204 (283)
Q Consensus 161 RlKr~pllaal~Il~v~a~i---------------v~lg~~l~~~t~~~g~p~~~---------------------~~~v 204 (283)
|++....+....++...+++ -.+..+.|... .++++..+ ....
T Consensus 78 ~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~~-lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~ 156 (279)
T PRK09573 78 RISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAKD-LKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRI 156 (279)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 99777644433332221110 01111222211 22222110 1122
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHHH
Q 023367 205 IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYF 254 (283)
Q Consensus 205 ~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~aY 254 (283)
+++..+.+++++++++.||+||+|+|++.|++|+|+++|+|++..+...|
T Consensus 157 ~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~ 206 (279)
T PRK09573 157 IILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKIL 206 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHH
Confidence 33445556778899999999999999999999999999999994444433
No 7
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=1.4e-21 Score=182.57 Aligned_cols=154 Identities=23% Similarity=0.223 Sum_probs=92.6
Q ss_pred HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------cccch
Q 023367 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------LPLLR 161 (283)
Q Consensus 88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------iPplR 161 (283)
+|.+++.+||++|+.++++..+|.++| +..++ + ..++.++.....-|.+.|++|||||.|.|+ =|.++
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~~--~---~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~g~ 74 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEID--W---LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVEGA 74 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHH-CCCCC--h---HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCc
Confidence 367899999999999999999999999 32222 2 122223334555666667889999999998 12222
Q ss_pred hhHHHH-----HHHH--HH-HHHHHHHH---------HH---HHHHHHH-H-hhhcCCC---------------------
Q 023367 162 WKRFAV-----AAAM--CI-LAVRAVVV---------QL---AFYLHMQ-T-HVYRRPA--------------------- 198 (283)
Q Consensus 162 lKr~pl-----laal--~I-l~v~a~iv---------~l---g~~l~~~-t-~~~g~p~--------------------- 198 (283)
+++... .... ++ +.+..... .+ ..+.|.. . -++.+|.
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~ 154 (282)
T PRK13105 75 VLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVLA 154 (282)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 333211 1111 11 00000000 00 0111110 0 0000111
Q ss_pred --CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 199 --VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 199 --~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
..+...+++...+.+++.+++++||+||+||||+.|+||+|+++|+|++
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a 205 (282)
T PRK13105 155 GAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRT 205 (282)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHH
Confidence 1122334455566677999999999999999999999999999999999
No 8
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=3.7e-21 Score=177.15 Aligned_cols=157 Identities=22% Similarity=0.264 Sum_probs=105.3
Q ss_pred HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cccc
Q 023367 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (283)
Q Consensus 88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------iPpl 160 (283)
+++|+|++||++..++.++++.|+++|.+..+ +. ..++..+++.+++.++.|.+|||+|+|+|| +|++
T Consensus 4 ~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~---~~--~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G 78 (276)
T PRK12882 4 VRGYLELTRPVNAVVAGVAAFIGAFIAGGILS---SP--SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG 78 (276)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---hH--HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCC
Confidence 68999999999999999999999999844321 21 112336668888999999999999999998 8899
Q ss_pred hhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhcCCCCcch-----------------------
Q 023367 161 RWKRFAVAAAMCILAVRAVV---------------VQLAFYLHMQTHVYRRPAVFSK----------------------- 202 (283)
Q Consensus 161 RlKr~pllaal~Il~v~a~i---------------v~lg~~l~~~t~~~g~p~~~~~----------------------- 202 (283)
++++........++.+.+++ ..+..+.|... ++..|..++.
T Consensus 79 ~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Yt~~-lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~ 157 (276)
T PRK12882 79 AVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAET-LKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLL 157 (276)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHhcccchH
Confidence 98766544333222211111 01111223211 2222321111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHH
Q 023367 203 PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVL 250 (283)
Q Consensus 203 ~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll 250 (283)
..+.+....+++++++|++||+||+|||++.|++|+|+++|+|++..+
T Consensus 158 ~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~ 205 (276)
T PRK12882 158 ALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYV 205 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHH
Confidence 112223334456779999999999999999999999999999999333
No 9
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.87 E-value=3.4e-21 Score=186.35 Aligned_cols=164 Identities=16% Similarity=0.216 Sum_probs=108.4
Q ss_pred hhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----
Q 023367 82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL-FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---- 156 (283)
Q Consensus 82 ~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~-~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---- 156 (283)
+..+++++.|++++||+|++...+++++|+..+ +. .++.+. +...++.++++..++++++|.+|||||+|+|+
T Consensus 79 ~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~-~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~ 156 (375)
T PLN00012 79 AQETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GN-FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEP 156 (375)
T ss_pred ccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CC-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCC
Confidence 466788999999999999999999999999842 21 122211 12233446777888899999999999999999
Q ss_pred ---cccchhhHHHHHHHHHHHHH----HHHH------------HHH------HHHHHHH-HhhhcC-CC-----------
Q 023367 157 ---LPLLRWKRFAVAAAMCILAV----RAVV------------VQL------AFYLHMQ-THVYRR-PA----------- 198 (283)
Q Consensus 157 ---iPplRlKr~pllaal~Il~v----~a~i------------v~l------g~~l~~~-t~~~g~-p~----------- 198 (283)
+|++++++...+....++.. .++. ..+ ..|.|.. .+.+|+ +.
T Consensus 157 ~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~ 236 (375)
T PLN00012 157 YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYI 236 (375)
T ss_pred CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHH
Confidence 88898876654332111110 0100 001 1112210 001111 11
Q ss_pred ------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 199 ------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 199 ------------~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
..+...++++.+++++++++++.||++|+|||++.|++|+|+++|++++
T Consensus 237 ~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a 297 (375)
T PLN00012 237 SLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETA 297 (375)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHH
Confidence 0112233444556678889999999999999999999999999999999
No 10
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.86 E-value=2e-20 Score=173.56 Aligned_cols=165 Identities=21% Similarity=0.216 Sum_probs=115.7
Q ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (283)
Q Consensus 84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------- 156 (283)
-...++.+.|+.||++++...++...|..++... +.. +..++.+++++++++.+++++||++|+|+||
T Consensus 9 ~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~---~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~ 83 (289)
T COG0382 9 KLKALLKLLRLDRPIFNLLLLLPALLGLLLAASG---LPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKN 83 (289)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---Cch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccC
Confidence 3456677888889999999999999999888522 222 2333447778899999999999999999999
Q ss_pred --cccchhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhcCC--------------------CC
Q 023367 157 --LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRRP--------------------AV 199 (283)
Q Consensus 157 --iPplRlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~t~~~g~p--------------------~~ 199 (283)
+|++|+++........++.+.++++ .+..+.| .+.|+.+ ..
T Consensus 84 RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y--~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~ 161 (289)
T COG0382 84 RPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAY--PFLKRFTFLPQLVLGLAFGLGALAGAAAV 161 (289)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHhhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 8999997776444333222211111 1111112 1112111 11
Q ss_pred c---chHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHHHH
Q 023367 200 F---SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFS 255 (283)
Q Consensus 200 ~---~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~aY~ 255 (283)
. ..+.+++..+..+++++++++||+||+||||+.|++|+|+.+|++++..+...+.
T Consensus 162 ~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~ 220 (289)
T COG0382 162 GGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL 220 (289)
T ss_pred hCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH
Confidence 1 4456777888889999999999999999999999999999999999944444443
No 11
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.85 E-value=2.5e-20 Score=175.66 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=104.1
Q ss_pred HHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL-FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (283)
Q Consensus 85 ~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~-~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------- 156 (283)
.+++++|++++||++++.+.++++.|++.+ +. .++... .+..++.++++..++++++|.+|||+|+|+|+
T Consensus 24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp 101 (314)
T PRK07566 24 TSIWKARLQLMKPITWFPPMWAFLCGAVSS-GA-FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP 101 (314)
T ss_pred chHHHHHHHHhCCcchHHHHHHHHHHHHHc-CC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence 466889999999999999999999888754 22 222221 12223445667777899999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH-HhhhcC-CCC--------------------
Q 023367 157 LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQ-THVYRR-PAV-------------------- 199 (283)
Q Consensus 157 iPplRlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~-t~~~g~-p~~-------------------- 199 (283)
+|++++++........++.+.++++ .+..+.|.. .+.+|+ +..
T Consensus 102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~ 181 (314)
T PRK07566 102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAA 181 (314)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 8888887776444333222211111 001111210 001121 111
Q ss_pred -----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 200 -----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 200 -----~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.+...+++....++++.++++.||++|+|+||+.|+||+|+++|+|++
T Consensus 182 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a 234 (314)
T PRK07566 182 FGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNA 234 (314)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHH
Confidence 111222333344456778999999999999999999999999999988
No 12
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=5e-20 Score=169.29 Aligned_cols=156 Identities=20% Similarity=0.268 Sum_probs=106.7
Q ss_pred HHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cc
Q 023367 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LP 158 (283)
Q Consensus 86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------iP 158 (283)
+++++|+|++||++.+++.++++.|+++|.+. +++ .. ++.++++.+++.+++|.+|||+|+|+|+ +|
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~~--~~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LPL--DE-ALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---Cch--HH-HHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 46899999999999999999999999988543 222 11 2235567888999999999999999998 88
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH------------HHHH-HHHHHHhh-hcCCCCc----------------------ch
Q 023367 159 LLRWKRFAVAAAMCILAVRAVVV------------QLAF-YLHMQTHV-YRRPAVF----------------------SK 202 (283)
Q Consensus 159 plRlKr~pllaal~Il~v~a~iv------------~lg~-~l~~~t~~-~g~p~~~----------------------~~ 202 (283)
++|++.........++...++++ .++. +...++.. +..+... +.
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 155 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNE 155 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCch
Confidence 99987776443333222211110 0010 01112222 2222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 203 PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 203 ~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
..+++..+.+++++++++.+|++|+||||+.|++|+|+++|+|++
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~ 200 (279)
T PRK12884 156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIA 200 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHH
Confidence 233344456677889999999999999999999999999999999
No 13
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=3.8e-20 Score=172.85 Aligned_cols=168 Identities=25% Similarity=0.318 Sum_probs=97.3
Q ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc-ccc-
Q 023367 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKL-PLL- 160 (283)
Q Consensus 84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~-~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDki-Ppl- 160 (283)
..+.++.+++.+||+++..+..+++.|+.+|.....+ +++. +..++..++ +..|.+++++|||+|+|+|+. |+-
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-~~~ll~~~~--i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-AVALFAYFL--FPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-HHHHHHHHH--HHHHHHHhcchhhhhhhccccCCCcc
Confidence 4567888999999999999999999999999654322 3332 222221222 446788889999999999992 221
Q ss_pred --h-----hhHHHHHHH--HHHHHHH--------HHHHHHHHHHH--HHH---h-hhcCCC-------------------
Q 023367 161 --R-----WKRFAVAAA--MCILAVR--------AVVVQLAFYLH--MQT---H-VYRRPA------------------- 198 (283)
Q Consensus 161 --R-----lKr~pllaa--l~Il~v~--------a~iv~lg~~l~--~~t---~-~~g~p~------------------- 198 (283)
| .|+....+. .+.+.+. +..+.++.... .++ . ++..|.
T Consensus 81 ~~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~~~~~~~~y~~ 160 (282)
T PRK12875 81 REREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGLYILPGVAAYAL 160 (282)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111111 0111000 00011111101 111 0 011110
Q ss_pred ---CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-HHHHHHHHh
Q 023367 199 ---VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-SVLDLYFST 256 (283)
Q Consensus 199 ---~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-~ll~~aY~~ 256 (283)
..++..+ ..-..+++.+++++||+||+|+|++.|+||+|+++|+|++ .+...+|+.
T Consensus 161 ~tg~~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~ 220 (282)
T PRK12875 161 VSGSLPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLL 220 (282)
T ss_pred HcCCCcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHH
Confidence 0111111 1122477889999999999999999999999999999999 344444444
No 14
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.84 E-value=3.7e-20 Score=170.56 Aligned_cols=153 Identities=25% Similarity=0.331 Sum_probs=99.5
Q ss_pred HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cccc
Q 023367 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (283)
Q Consensus 88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------iPpl 160 (283)
+++|+|++|||++....++++.|++++.+..+++ . . ++..+++.+++.+++|.+|||+|+|+|+ +|++
T Consensus 3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~--~--~-~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG 77 (277)
T PRK12883 3 LKAFIEITRPHNCILAGIVGILGSLVALGGIPPI--K--T-LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77 (277)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcH--H--H-HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence 6789999999999999999999999884432221 1 1 1223456666778889999999999998 8888
Q ss_pred hhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhcC-CCCcch---------HH-----------
Q 023367 161 RWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRR-PAVFSK---------PL----------- 204 (283)
Q Consensus 161 RlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~t~~~g~-p~~~~~---------~v----------- 204 (283)
|+++........++...+.++ .+..+.| +..+++ +..++. ++
T Consensus 78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y--~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~ 155 (277)
T PRK12883 78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLY--AWKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGL 155 (277)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCCcchhhHHHHHHHHHHHHHHHHHhccccH
Confidence 887765444332222211111 0011112 111121 111111 00
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 205 -IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 205 -~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.++..+.+++.+++++.||++|+||||+.|++|+|+++|+|++
T Consensus 156 ~~~~~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a 199 (277)
T PRK12883 156 AGYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRA 199 (277)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHH
Confidence 0112234456678999999999999999999999999999998
No 15
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.84 E-value=7.1e-20 Score=169.57 Aligned_cols=165 Identities=21% Similarity=0.242 Sum_probs=107.9
Q ss_pred HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hccc---------
Q 023367 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDI--EIDK--------- 156 (283)
Q Consensus 88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~--EIDk--------- 156 (283)
+++|+|++||+++.++.+++++|..+|... ..+++. .++.+++++++++.++|.+|||||+ ++|+
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~ 78 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA 78 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence 678999999999999999999999998532 334432 2233667888999999999999999 5785
Q ss_pred cccchhhHHHHHHHHHHHHHH----HHHH---------HHHHH----HHHHHhh---hcCCC------------------
Q 023367 157 LPLLRWKRFAVAAAMCILAVR----AVVV---------QLAFY----LHMQTHV---YRRPA------------------ 198 (283)
Q Consensus 157 iPplRlKr~pllaal~Il~v~----a~iv---------~lg~~----l~~~t~~---~g~p~------------------ 198 (283)
+|+++++.........++... ++.+ .+++. .+.++.. ++...
T Consensus 79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~ 158 (293)
T PRK06080 79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGT 158 (293)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHH
Confidence 888888776644332222211 1110 01100 0111100 00000
Q ss_pred ------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367 199 ------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST 256 (283)
Q Consensus 199 ------~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~ 256 (283)
..+..+++......+++.++.+.||++|+||||+.|+||+|+++|+|++ .+...+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~ 227 (293)
T PRK06080 159 YYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLC 227 (293)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHH
Confidence 0112233334455567788999999999999999999999999999998 444445554
No 16
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=1.6e-19 Score=168.92 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=110.1
Q ss_pred hhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhcc---CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--
Q 023367 82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV---SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-- 156 (283)
Q Consensus 82 ~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~---~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-- 156 (283)
++.++++++|+|++||++.+++...++.|.++|.... ..+++ ..++.++++++++..++|.+|||+|+|||+
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGF---KLLILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 4567789999999999999999999999999985311 12232 122235567777888999999999999999
Q ss_pred -------cccchhhHHHHHHHHHHHHHHH-----------HHHHHHH--HHHHHHhhhcCCCC-----------------
Q 023367 157 -------LPLLRWKRFAVAAAMCILAVRA-----------VVVQLAF--YLHMQTHVYRRPAV----------------- 199 (283)
Q Consensus 157 -------iPplRlKr~pllaal~Il~v~a-----------~iv~lg~--~l~~~t~~~g~p~~----------------- 199 (283)
+|++|++....+....++.+.+ ..+.++. +...+++.++....
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~ 158 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGV 158 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHH
Confidence 8999997776444333222111 1111111 11112222221100
Q ss_pred ------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 200 ------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 200 ------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.+...+++...+++++.+++++++++|+|+||+.|++|+|+++|++++
T Consensus 159 ~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~ 212 (291)
T PRK12874 159 VAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKAT 212 (291)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhH
Confidence 111223344455688899999999999999999999999999999988
No 17
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.83 E-value=1.3e-19 Score=172.69 Aligned_cols=163 Identities=15% Similarity=0.275 Sum_probs=101.0
Q ss_pred hHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----
Q 023367 83 SVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV-SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----- 156 (283)
Q Consensus 83 ~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~-~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk----- 156 (283)
...+++|+|+|++||+|++ ..++++.|..+|.+.. +++....+ .+...++...++.+++|.+|||||+|+|+
T Consensus 7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rt 84 (331)
T PRK12392 7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPT 84 (331)
T ss_pred chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCC
Confidence 3466789999999999999 6677777777775321 12221111 11112333344566788999999999999
Q ss_pred --cccchhhHHHHHHHHHHHHHHHH----HH-------------------HHHHHHHHH-HhhhcC-CCC----------
Q 023367 157 --LPLLRWKRFAVAAAMCILAVRAV----VV-------------------QLAFYLHMQ-THVYRR-PAV---------- 199 (283)
Q Consensus 157 --iPplRlKr~pllaal~Il~v~a~----iv-------------------~lg~~l~~~-t~~~g~-p~~---------- 199 (283)
+|++|+++...+....++...++ .+ .+..+.|.. .+-+|+ +..
T Consensus 85 Rpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~ 164 (331)
T PRK12392 85 RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYG 164 (331)
T ss_pred CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHH
Confidence 88888876654433222221111 10 001111210 000122 111
Q ss_pred -------------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 200 -------------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 200 -------------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.+..++++....++++++++++||++|+|||++.|+||+|+++|++++
T Consensus 165 ~~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a 225 (331)
T PRK12392 165 FITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNT 225 (331)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhH
Confidence 112233445566677899999999999999999999999999999999
No 18
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.83 E-value=1.5e-19 Score=167.20 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=103.9
Q ss_pred HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------cc
Q 023367 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP 158 (283)
Q Consensus 88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------iP 158 (283)
++.|+|++||++.+++...++.|.++|.....+ +. . ++..+++.+++++++|.+|||+|+|+|+ +|
T Consensus 2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~--~~--~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~ 76 (282)
T TIGR01475 2 FKDILELIKFEHTVFALPFAYAGALLAAKGLPG--LK--T-LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV 76 (282)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHhcCCCCC--HH--H-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence 689999999999999999999999988543222 21 1 2235668888999999999999999999 88
Q ss_pred cchhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhcCCC-----------------------Cc
Q 023367 159 LLRWKRFAVAAAMCILAVR---------------AVVVQLAFYLHMQTHVYRRPA-----------------------VF 200 (283)
Q Consensus 159 plRlKr~pllaal~Il~v~---------------a~iv~lg~~l~~~t~~~g~p~-----------------------~~ 200 (283)
++|++....+....+..+. +....+..+.| ++.+.... ..
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y--~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~ 154 (282)
T TIGR01475 77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIY--PYTKRFTFLCHYVLGSTYGLAPLAGWVAVIGTI 154 (282)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--hhHhccccccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9998777543332211110 00111111222 11111110 01
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 201 S--KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 201 ~--~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
+ ...+++....++++.+++++||+||+|||++.|++|+|+++|+|++
T Consensus 155 ~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a 203 (282)
T TIGR01475 155 SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAA 203 (282)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHH
Confidence 1 2223344455677889999999999999999999999999999888
No 19
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.83 E-value=1.6e-19 Score=167.27 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=106.3
Q ss_pred hHHHHHHHhhhhcccchhHH---HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---
Q 023367 83 SVINALDAFYRFSRPHTVIG---TALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--- 156 (283)
Q Consensus 83 ~~~~~l~a~~~l~RPht~ig---a~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk--- 156 (283)
++++++++|+|++|||+..+ +.++++.|.++|.... ..++ ..++..+++++++.+++|.+|||+|+|+|+
T Consensus 2 ~~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~---~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~ 77 (285)
T PRK12847 2 DILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDI---SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVA 77 (285)
T ss_pred chHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCC
Confidence 45678999999999998876 5588888998885432 1222 122335667788999999999999999997
Q ss_pred ------cccchhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhcCCCC----------------
Q 023367 157 ------LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRRPAV---------------- 199 (283)
Q Consensus 157 ------iPplRlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~t~~~g~p~~---------------- 199 (283)
+|++|++....+....++...+.++ .+..+.| ++ .++...
T Consensus 78 Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y--~~-~Kr~~~~~~~~~g~~~~~~~l~ 154 (285)
T PRK12847 78 RTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLY--PL-MKRFFYWPQLFLGFTFNMGILM 154 (285)
T ss_pred cccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--cc-cccCCcccHHHHHHHHHHHHHH
Confidence 8889987665444333222211111 1111112 21 111100
Q ss_pred --------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 200 --------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 200 --------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.+...+++....++++.+.++.++++|+|+|++.|++|+|+++|+|++
T Consensus 155 ~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a 210 (285)
T PRK12847 155 AFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTR 210 (285)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccH
Confidence 111223344455677889999999999999999999999999999988
No 20
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=3.1e-19 Score=168.00 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=106.0
Q ss_pred hhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----
Q 023367 82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----- 156 (283)
Q Consensus 82 ~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk----- 156 (283)
+..++++++|.|++||++.+++..+++.|.++|....++ +. .++.++++.+++.+++|.+|||+|+|||+
T Consensus 9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~--~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT 83 (300)
T PRK13106 9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPP--IS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRT 83 (300)
T ss_pred hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence 346678999999999999999999999999998543222 21 12235667788899999999999999999
Q ss_pred ----cccchhhHHHHHHHHHHHHH----H-----------HHHHHHHHHHHHHHhhhcCCC-------------------
Q 023367 157 ----LPLLRWKRFAVAAAMCILAV----R-----------AVVVQLAFYLHMQTHVYRRPA------------------- 198 (283)
Q Consensus 157 ----iPplRlKr~pllaal~Il~v----~-----------a~iv~lg~~l~~~t~~~g~p~------------------- 198 (283)
+|++|++....+........ . +.+..+..++| ++.++...
T Consensus 84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~lg~~~~~~~~~G~~ 161 (300)
T PRK13106 84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSY--PYMKRYTAFANYHLASIQGLAVFSGAV 161 (300)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--hHHhcCCcchHHHHHHHHHHHHHHHHH
Confidence 89999977764432211110 0 00001111122 21111100
Q ss_pred --Cc----c------hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 199 --VF----S------KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 199 --~~----~------~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.+ + ...+++....++++++++++||+||+|+|++.|++|+|+++| +++
T Consensus 162 a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a 221 (300)
T PRK13106 162 AVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWA 221 (300)
T ss_pred HHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhH
Confidence 00 0 011223334567889999999999999999999999999999 777
No 21
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.82 E-value=2.7e-19 Score=167.15 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=108.9
Q ss_pred HHHHHHhhhhcccchhHHHH---HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----
Q 023367 85 INALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----- 156 (283)
Q Consensus 85 ~~~l~a~~~l~RPht~iga~---l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk----- 156 (283)
.+++++|+|++||++..++. ++++.|.++|....++ +. .++..+++.+++.+++|.+|||+|+|+||
T Consensus 6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~--~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt 80 (290)
T PRK12870 6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPP--LP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVERT 80 (290)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcc
Confidence 45789999999999998888 5888899888543222 21 12234567777899999999999999997
Q ss_pred ----cccchhhHHHHHHHHHHHHHHHHHH-----------H----HHHHHHHHHhhhcC---CC----------------
Q 023367 157 ----LPLLRWKRFAVAAAMCILAVRAVVV-----------Q----LAFYLHMQTHVYRR---PA---------------- 198 (283)
Q Consensus 157 ----iPplRlKr~pllaal~Il~v~a~iv-----------~----lg~~l~~~t~~~g~---p~---------------- 198 (283)
+|++|++..........+...++++ . +..++| ++.++. |.
T Consensus 81 ~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~lg~~~~~~~l~g~~ 158 (290)
T PRK12870 81 RFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLY--PLAKRVFPVPQLVLAIAWGFAVLISWS 158 (290)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--hhhhhccccceeeehHHHHhHHHHHHH
Confidence 8999998776444333222211110 0 111122 111110 00
Q ss_pred ----CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHHH
Q 023367 199 ----VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYF 254 (283)
Q Consensus 199 ----~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~aY 254 (283)
..+...+++....++++.+++++++++|+|+|++.|++|+|+++|+|++..+...+
T Consensus 159 a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~ 218 (290)
T PRK12870 159 AVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFF 218 (290)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHH
Confidence 01122334455667889999999999999999999999999999999884444333
No 22
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.81 E-value=7.2e-19 Score=166.42 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=53.2
Q ss_pred HHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 023367 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk 156 (283)
++.|+|.+||+|...+.++++.|+.+|......+++. .++.++++++++++..|.+|||||+|.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~ 68 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKAL 68 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 5779999999999999999999999996543445543 23336678888999999999999998544
No 23
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.80 E-value=1.6e-18 Score=162.43 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=107.3
Q ss_pred HHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------c
Q 023367 87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L 157 (283)
Q Consensus 87 ~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------i 157 (283)
+++.|+|++||++.+.+...++.|.++|.+... ++. ..+ ..+++.+++-.+++++|||+|+|||| +
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~--~l~-l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI--KIL-LILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH--HHH-HHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 378999999999999999999999999854322 221 112 23446778899999999999999999 9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhh----------cC---------------CC
Q 023367 158 PLLRWKRFAVAAAMCILAVRAVVV--------------QLAFYLHMQTHVY----------RR---------------PA 198 (283)
Q Consensus 158 PplRlKr~pllaal~Il~v~a~iv--------------~lg~~l~~~t~~~----------g~---------------p~ 198 (283)
|++|+++...+....++...++.+ .+.++.++ .+.| |. ..
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~y-p~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~~ 155 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIID-PFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAF 155 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHhCccccHHHHHHHHHhHHHHHHHHHcCCC
Confidence 999998776544333322211110 11111111 1111 10 00
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHH
Q 023367 199 VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLD 251 (283)
Q Consensus 199 ~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~ 251 (283)
.+....+++....++++.+.++++|.+|+|+|++.|++|+|+++|++++..+.
T Consensus 156 ~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~ 208 (286)
T PRK12895 156 PYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYIS 208 (286)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHH
Confidence 11112234555667889999999999999999999999999999999884333
No 24
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.80 E-value=1.1e-18 Score=160.44 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=92.6
Q ss_pred HHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc-------c
Q 023367 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKL-------P 158 (283)
Q Consensus 86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDki-------P 158 (283)
+.+++++|+.|+.|.+.+..++..+..... ..+..+ .+ ..+++++++..++|.+|||+|+|+|+. |
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~~~-~~----~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGLPI-SW----LLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcChh-HH----HHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 457899999999999999888877653211 112111 11 245577778888999999999999992 2
Q ss_pred cchhhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH---hhhcCCCC--------------------
Q 023367 159 LLRWKRFAVAAAMCILAVRAVV----------------VQLAFYLHMQT---HVYRRPAV-------------------- 199 (283)
Q Consensus 159 plRlKr~pllaal~Il~v~a~i----------------v~lg~~l~~~t---~~~g~p~~-------------------- 199 (283)
+.|..+...+...++....++. ..+..++|... ..+..|..
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~ 154 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY 154 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh
Confidence 2222222111111111111100 01111122110 01111211
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 200 ----~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
++...++...++++..++++++||+||+||||+.|++|+|+++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t 206 (285)
T PRK12872 155 YQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERT 206 (285)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHH
Confidence 112233344566667789999999999999999999999999999999
No 25
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.79 E-value=4.3e-18 Score=159.25 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=105.0
Q ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (283)
Q Consensus 84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------- 156 (283)
..+++++|+|++||++.++...+++.|+++|....++ . ..++..+++.+++.+++|++|||+|+|+|+
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~---~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--A---SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--H---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 4678999999999999999999999999998543232 1 112224567778888999999999999999
Q ss_pred --cccchhhHHHHHHHHHHHHHHH-----------HHHH-HHHH-HHHHHhhhcCCCC----------------------
Q 023367 157 --LPLLRWKRFAVAAAMCILAVRA-----------VVVQ-LAFY-LHMQTHVYRRPAV---------------------- 199 (283)
Q Consensus 157 --iPplRlKr~pllaal~Il~v~a-----------~iv~-lg~~-l~~~t~~~g~p~~---------------------- 199 (283)
+|++|++..............+ ..+. ++.. ...+++.++....
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g 158 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRG 158 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcC
Confidence 8899997765433221111100 0000 0110 1111211211100
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 200 -FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 200 -~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.+...+++....++++.+.+++++++|.|+|++.|++|+|+++|++++
T Consensus 159 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~ 207 (291)
T PRK12886 159 TIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGS 207 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhH
Confidence 111222333344567788999999999999999999999999999988
No 26
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.79 E-value=4e-18 Score=159.08 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=104.1
Q ss_pred HHHhhhhcccchhHHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------c
Q 023367 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKV-SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L 157 (283)
Q Consensus 88 l~a~~~l~RPht~iga~l~vl~g~llA~~~~-~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------i 157 (283)
+++|+|++||+|.+++...++.+++++.... ..+++ ..++..+++.+++.+++|.+|||+|+|+|+ +
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL 78 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHW---ADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence 6899999999999999999999888875211 12222 112235668888999999999999999999 8
Q ss_pred ccchhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhcCCC------------------------
Q 023367 158 PLLRWKRFAVAAAMCILAVR---------------AVVVQLAFYLHMQTHVYRRPA------------------------ 198 (283)
Q Consensus 158 PplRlKr~pllaal~Il~v~---------------a~iv~lg~~l~~~t~~~g~p~------------------------ 198 (283)
|++|++....+...+..... +.+..+..+.| ++ .|+..
T Consensus 79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y--~~-~Kr~t~~~~~~lg~~~~~~~l~g~~a~~g 155 (284)
T PRK12888 79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVY--PY-AKRFTNFPHAILGLAQAVGPVGAWIAVTG 155 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HH-hhcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 99999776544332221110 00000111122 11 11100
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 199 VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 199 ~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
..+...+++....++++.+.+++++++|+|+||+.|++|+|+++|+|++
T Consensus 156 ~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a 204 (284)
T PRK12888 156 TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAA 204 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhH
Confidence 0122233445556678889999999999999999999999999999988
No 27
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.78 E-value=3.2e-18 Score=161.52 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=105.3
Q ss_pred HHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccccc---c
Q 023367 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKLP---L 159 (283)
Q Consensus 85 ~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDkiP---p 159 (283)
.++++.|++-+||++...+..+++.|..+|.....++++. .++..+++++++++..|.+|||||++ +|+-+ +
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~ 85 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKNKFHSV 85 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCc
Confidence 4568889999999999999999999999996543456653 22336779999999999999999999 78721 1
Q ss_pred ch----hhHHHHHHHHHHHH--HHHH---------HHHHHHHHH-HHHhhhcCCCC------------------------
Q 023367 160 LR----WKRFAVAAAMCILA--VRAV---------VVQLAFYLH-MQTHVYRRPAV------------------------ 199 (283)
Q Consensus 160 lR----lKr~pllaal~Il~--v~a~---------iv~lg~~l~-~~t~~~g~p~~------------------------ 199 (283)
.| -|+...++..+.+. +.++ ++.+|..-. ...+..++|..
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~ 165 (304)
T PRK07419 86 VNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAAL 165 (304)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHH
Confidence 11 12222222111110 0000 111111100 00001222322
Q ss_pred ------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367 200 ------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST 256 (283)
Q Consensus 200 ------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~ 256 (283)
++...+.....+.+.+..+...||++|+|.||+.|.||+|+++|+|++ .++..+|++
T Consensus 166 yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~ 233 (304)
T PRK07419 166 YSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYAL 233 (304)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHH
Confidence 111122222233355667889999999999999999999999999999 555666665
No 28
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.78 E-value=1.5e-17 Score=157.33 Aligned_cols=161 Identities=17% Similarity=0.098 Sum_probs=109.3
Q ss_pred hhHHHHHHHhhhhc---ccchhHHHHHHHHHHHHHHhhccC---CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 023367 82 NSVINALDAFYRFS---RPHTVIGTALSIVSVALLAVEKVS---DISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID 155 (283)
Q Consensus 82 ~~~~~~l~a~~~l~---RPht~iga~l~vl~g~llA~~~~~---~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EID 155 (283)
..+.++++.|+|++ ||++.....++++.|+++|..... ..++. .++..+++++++.+++|.+|||+|+|+|
T Consensus 24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD 100 (314)
T PRK12878 24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDID 100 (314)
T ss_pred hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34668899999999 999999999999999999854211 22221 2233667888899999999999999999
Q ss_pred c---------cccchhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhcC---C-------CC--
Q 023367 156 K---------LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRR---P-------AV-- 199 (283)
Q Consensus 156 k---------iPplRlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~t~~~g~---p-------~~-- 199 (283)
+ +|++|++....+....++.+.++.+ .+..+.| +..+.. | +.
T Consensus 101 ~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~~Gl~~~~~ 178 (314)
T PRK12878 101 AKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAY--PFMKRITWWPQFFLGLAFSWG 178 (314)
T ss_pred cCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHhcCCcchHHHHHHHHHH
Confidence 7 8899997776544333322211111 1111122 211110 0 00
Q ss_pred -----------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 200 -----------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 200 -----------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.+...+++....++++.+.+.+++++|+|+|++.|++|+|+++|++++
T Consensus 179 ~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~ 237 (314)
T PRK12878 179 ALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTK 237 (314)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhH
Confidence 111122333345567888999999999999999999999999999988
No 29
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.77 E-value=1.9e-17 Score=154.81 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=98.3
Q ss_pred HHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc-------
Q 023367 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK------- 156 (283)
Q Consensus 86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDk------- 156 (283)
++++.|++.+||+|..++.++++.|..+|.....++++. .++.++++++++++..|.+|||+|+| +|+
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 467899999999999999999999999986543456643 23346778899999999999999955 554
Q ss_pred ---cccchhhHHHHHHHHHHHHHHH----H---------HHHHHHHHH-HHHhhhcCCCC------cc-------hHHHH
Q 023367 157 ---LPLLRWKRFAVAAAMCILAVRA----V---------VVQLAFYLH-MQTHVYRRPAV------FS-------KPLIF 206 (283)
Q Consensus 157 ---iPplRlKr~pllaal~Il~v~a----~---------iv~lg~~l~-~~t~~~g~p~~------~~-------~~v~~ 206 (283)
+|.+++++........++...+ . .+.+++... ......++|.. +. .++++
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~v 158 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLV 158 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHH
Confidence 4555564443322221111111 0 001111000 00001122211 00 01111
Q ss_pred H-----------------HHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 207 A-----------------TAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 207 l-----------------t~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
+ ..-..+.+..+-+.||++|+|+||+.|+||+|+++|+|++
T Consensus 159 lg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a 216 (296)
T PRK05951 159 MGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA 216 (296)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH
Confidence 1 1112233456779999999999999999999999999998
No 30
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.77 E-value=2.2e-17 Score=153.16 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=101.5
Q ss_pred HHHHHhhhhcccchhHHHH---HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 023367 86 NALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (283)
Q Consensus 86 ~~l~a~~~l~RPht~iga~---l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------ 156 (283)
+++++|+|++|||+..++. ++++.|.++|....++ .. .++..+++.+++.+++|.+|||+|+|+|+
T Consensus 3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~ 77 (282)
T PRK12848 3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK 77 (282)
T ss_pred hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence 4589999999977665544 5677888887543222 11 12224567778899999999999999997
Q ss_pred ---cccchhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhcCCCC-------------------
Q 023367 157 ---LPLLRWKRFAVAAAMCILAVRAVV---------------VQLAFYLHMQTHVYRRPAV------------------- 199 (283)
Q Consensus 157 ---iPplRlKr~pllaal~Il~v~a~i---------------v~lg~~l~~~t~~~g~p~~------------------- 199 (283)
+|++|++.........++...+.+ ..+..++| ++.++....
T Consensus 78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~Kr~~~~~~~~~g~~~g~~~~~g~~a 155 (282)
T PRK12848 78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIY--PFMKRYTHLPQVVLGAAFGWGIPMAFAA 155 (282)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HhHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 899999877644433332221111 11111223 212211100
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHHHHh
Q 023367 200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFST 256 (283)
Q Consensus 200 ----~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~aY~~ 256 (283)
.+...+++.....+++.......+++|+|+|++.|++|+|+++|+|++..+...|..
T Consensus 156 ~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~ 216 (282)
T PRK12848 156 VQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLA 216 (282)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHH
Confidence 111112222233455667778888999999999999999999999988444444443
No 31
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.76 E-value=1e-17 Score=157.95 Aligned_cols=123 Identities=19% Similarity=0.215 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccc-------cccchhhHHHHHHHHHHHHHHHHHHH----------HHHHHHH----H
Q 023367 132 AIAAALMMNIYIVGLNQLSDIEIDK-------LPLLRWKRFAVAAAMCILAVRAVVVQ----------LAFYLHM----Q 190 (283)
Q Consensus 132 ~lla~l~~n~~~ngINDyfD~EIDk-------iPplRlKr~pllaal~Il~v~a~iv~----------lg~~l~~----~ 190 (283)
++++.+++.+.+|.+|||||+|||| +|++|+++..+.....++...++.++ +..++|. .
T Consensus 51 ~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~i~i~~~~i~~lY~~lm~a 130 (299)
T PRK13592 51 GVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFLFLYIYGTLMSF 130 (299)
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666778888999999999999 99999988875554433332222211 1222330 1
Q ss_pred HhhhcCCCCcchH---------------------------------HHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcc
Q 023367 191 THVYRRPAVFSKP---------------------------------LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRT 237 (283)
Q Consensus 191 t~~~g~p~~~~~~---------------------------------v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirT 237 (283)
++.++.+..++.. .+++..++++.+++||+.||+|| |||+++ .+|
T Consensus 131 ~~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~T 208 (299)
T PRK13592 131 WFFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVT 208 (299)
T ss_pred HHHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-Cee
Confidence 2223322221110 12444566677899999999999 899975 999
Q ss_pred cchhcchhhHHHHHHHHHh
Q 023367 238 FTVRLGQKRVSVLDLYFST 256 (283)
Q Consensus 238 Lai~lG~k~a~ll~~aY~~ 256 (283)
+|+++|+|++..++....+
T Consensus 209 lpi~~G~kkA~~ia~~l~i 227 (299)
T PRK13592 209 YSKLFGYKKATRFIEVVTL 227 (299)
T ss_pred echhccchhHHHHHHHHHH
Confidence 9999999999777776666
No 32
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.76 E-value=1.8e-17 Score=154.87 Aligned_cols=158 Identities=15% Similarity=0.083 Sum_probs=101.8
Q ss_pred HHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--------
Q 023367 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------- 156 (283)
Q Consensus 85 ~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk-------- 156 (283)
..++++|+|++||++++.+.++++.|+++|.+. .+++. .++.++++.+++.+++|.+|||+|+|+|+
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R 81 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR 81 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence 456899999999999999999999999998532 22322 12235667888899999999999999999
Q ss_pred -cccchhhHHHHHHHHHHHHHH------------HHHH-HHHH--HHHHHHhhhcCCCCcc-------------------
Q 023367 157 -LPLLRWKRFAVAAAMCILAVR------------AVVV-QLAF--YLHMQTHVYRRPAVFS------------------- 201 (283)
Q Consensus 157 -iPplRlKr~pllaal~Il~v~------------a~iv-~lg~--~l~~~t~~~g~p~~~~------------------- 201 (283)
+|++|+++........++... +..+ .+++ +...++...|+...++
T Consensus 82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~ 161 (296)
T PRK04375 82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAV 161 (296)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHh
Confidence 889999877643332221111 1111 1111 1222232123211111
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 202 -----KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 202 -----~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
...+++...++++.........+.|.|.|++.|++|+|+++|++++
T Consensus 162 ~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~ 212 (296)
T PRK04375 162 TGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVT 212 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHH
Confidence 1122233444455555555555677777899999999999999987
No 33
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.76 E-value=2.5e-17 Score=155.33 Aligned_cols=168 Identities=14% Similarity=0.200 Sum_probs=113.1
Q ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (283)
Q Consensus 84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------- 156 (283)
.+.++++|+|++||+++....++++.|+++|... +.++. . ++.++++..++.+++|.+|||+|+|+|+
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~--~-~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~ 83 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPV--L-MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN 83 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHH--H-HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence 4567899999999999999999999999998432 23332 1 2235567777888999999999999997
Q ss_pred --cccchhhHHHHHHHHHHHHHHH------------H-HHHHHH--HHHHHHhhhcC-CCC-------------------
Q 023367 157 --LPLLRWKRFAVAAAMCILAVRA------------V-VVQLAF--YLHMQTHVYRR-PAV------------------- 199 (283)
Q Consensus 157 --iPplRlKr~pllaal~Il~v~a------------~-iv~lg~--~l~~~t~~~g~-p~~------------------- 199 (283)
+|++|+++...+....++...+ . +..++. |...++...|+ +..
T Consensus 84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a 163 (306)
T PRK13362 84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCA 163 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHH
Confidence 8999998776444332221111 1 111222 22223322222 111
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHHHHHHHHHh
Q 023367 200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVSVLDLYFST 256 (283)
Q Consensus 200 ----~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ll~~aY~~ 256 (283)
.+...+++..++++++.......+++|.|+|++.|++|+|+++|+|++......|..
T Consensus 164 ~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~ 224 (306)
T PRK13362 164 VTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYIL 224 (306)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHH
Confidence 112234456667778888888899999999999999999999999988444444444
No 34
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.76 E-value=2.9e-17 Score=154.94 Aligned_cols=166 Identities=22% Similarity=0.239 Sum_probs=107.5
Q ss_pred HHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc-------
Q 023367 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK------- 156 (283)
Q Consensus 86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDk------- 156 (283)
++.+.|||..||||...++.+++.|+.+|......+++ ...+.++++++++++..|..|||+|.+ .|.
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 34589999999999999999999999999775434443 334447889999999999999999999 773
Q ss_pred ----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhhcCCCCc--ch-----------H
Q 023367 157 ----LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQT----------------HVYRRPAVF--SK-----------P 203 (283)
Q Consensus 157 ----iPplRlKr~pllaal~Il~v~a~iv~lg~~l~~~t----------------~~~g~p~~~--~~-----------~ 203 (283)
+-+-+.|+.-. ..++ ++..+..+.+|+++...+ ...|+|... .+ .
T Consensus 83 ~~g~I~~~~~k~~~~-l~l~-l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~ 160 (303)
T COG1575 83 QSGLIVRQSMKPALI-LSLA-LFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGP 160 (303)
T ss_pred ccceeecccCCHHHH-HHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHH
Confidence 33333333321 1111 111222222222222211 113554331 11 1
Q ss_pred HHHHHH-----------------HHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367 204 LIFATA-----------------FMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST 256 (283)
Q Consensus 204 v~~lt~-----------------f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~ 256 (283)
+++... ...+.+..+...|+++|+|-|++.|.+|+|+++|++++ .++..+|+.
T Consensus 161 l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~ 235 (303)
T COG1575 161 LIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLA 235 (303)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHH
Confidence 122111 11233346889999999999999999999999999999 667777776
No 35
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.76 E-value=1.9e-17 Score=153.56 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=102.3
Q ss_pred HHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------c
Q 023367 87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L 157 (283)
Q Consensus 87 ~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------i 157 (283)
++++|+|++||++..+..++++.|+++|.+. ..++. .++.++++.+++.+++|.+|||+|+|+|+ +
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 3689999999999999999999999998442 22221 12235667777899999999999999999 8
Q ss_pred ccchhhHHHHHHHHHHHHHHH-------------HHHHHHH--HHHHHHhhhcCCCCc----------------------
Q 023367 158 PLLRWKRFAVAAAMCILAVRA-------------VVVQLAF--YLHMQTHVYRRPAVF---------------------- 200 (283)
Q Consensus 158 PplRlKr~pllaal~Il~v~a-------------~iv~lg~--~l~~~t~~~g~p~~~---------------------- 200 (283)
|++|++..........+...+ ..+.++. +.+.++...|+-..+
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g 155 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTG 155 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899997765433322211111 1111111 122223212321111
Q ss_pred --chHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhHH
Q 023367 201 --SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVS 248 (283)
Q Consensus 201 --~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a~ 248 (283)
+...+++...++++..++.-..+.+|+|.|++.|++|+|+++|+|++.
T Consensus 156 ~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~ 205 (279)
T PRK12869 156 SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSV 205 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHH
Confidence 112223333444566667666677899999999999999999999883
No 36
>PLN02922 prenyltransferase
Probab=99.75 E-value=2.6e-17 Score=155.96 Aligned_cols=169 Identities=14% Similarity=0.157 Sum_probs=103.2
Q ss_pred HHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc---ccc
Q 023367 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---LPL 159 (283)
Q Consensus 85 ~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDk---iPp 159 (283)
.++++.|++-+||++...+.+++++|..+|......+++.. ++..++++++.+...|.+|||||++ +|+ -.+
T Consensus 12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~ 88 (315)
T PLN02922 12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV 88 (315)
T ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence 35578899999999999999999999999965434566532 2336789999999999999999998 676 111
Q ss_pred chh----hHHHHHHHHHHH----HHHHH--------HHHHHHHHH-HHHhhhcCCCC-----------------------
Q 023367 160 LRW----KRFAVAAAMCIL----AVRAV--------VVQLAFYLH-MQTHVYRRPAV----------------------- 199 (283)
Q Consensus 160 lRl----Kr~pllaal~Il----~v~a~--------iv~lg~~l~-~~t~~~g~p~~----------------------- 199 (283)
.|. |....++..|.+ ....+ ++.+|..-. ...+..++|..
T Consensus 89 ~~~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~ 168 (315)
T PLN02922 89 VNLVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAF 168 (315)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHH
Confidence 111 111111111110 00000 111111100 00001122221
Q ss_pred -----------------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367 200 -----------------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST 256 (283)
Q Consensus 200 -----------------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~ 256 (283)
.+..+++...-+.+.+.++.+.||++|+|.||+.|+||+|+++|+|++ +++..+|++
T Consensus 169 y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~ 247 (315)
T PLN02922 169 YLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSL 247 (315)
T ss_pred HHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHH
Confidence 011122222333345567889999999999999999999999999999 555566665
No 37
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.75 E-value=3.4e-17 Score=153.87 Aligned_cols=159 Identities=21% Similarity=0.221 Sum_probs=98.4
Q ss_pred HHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------
Q 023367 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--------- 156 (283)
Q Consensus 86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk--------- 156 (283)
+++++|+|++|||+...+..+++.|..+|......+++. ..++..+.+++.++ ++|.+|||+|+|+|+
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~--~~~l~~l~~~l~~~-ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE--LTIKAALIGLFGFE-AGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH--HHHHHHHHHHHHHH-HHHHHhhHHHHhcCcchHhhhhhc
Confidence 458899999999999998899889988884211223332 11222344555554 457999999999984
Q ss_pred ---------cccchhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHH--HHh-hhcC----C---CCcc---
Q 023367 157 ---------LPLLRWKRFAVAAAMCILAVRA-------------VVVQLAFYLHM--QTH-VYRR----P---AVFS--- 201 (283)
Q Consensus 157 ---------iPplRlKr~pllaal~Il~v~a-------------~iv~lg~~l~~--~t~-~~g~----p---~~~~--- 201 (283)
+|+++++....+....++...+ ..+.++++.+. ..+ .+++ | ..+.
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~kr~~~~p~~~l~G~~~~ 159 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVKKRNQKYPVAQLLGRTDF 159 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4666776555433322222211 11122222111 111 1222 2 1111
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 202 ---------------KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 202 ---------------~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
...+++..+.++++.+++++||++|+|||++.|++|+|+++|++++
T Consensus 160 ~~~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t 220 (297)
T PRK12871 160 TLFPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGT 220 (297)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHH
Confidence 1122334455677889999999999999999999999999999988
No 38
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.74 E-value=3.8e-17 Score=152.79 Aligned_cols=163 Identities=19% Similarity=0.170 Sum_probs=99.5
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--cccc---ccchh---
Q 023367 91 FYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKL---PLLRW--- 162 (283)
Q Consensus 91 ~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDki---PplRl--- 162 (283)
|++-+||++...+.++++.|..+|......+++.. ++.+++++++.++..|.+|||||.+ .|+- .+.|.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~ 78 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGS 78 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCc
Confidence 56889999999999999999999965434566532 2336678999999999999999998 5761 11111
Q ss_pred -hHHHHHHHHHHHH--H--------HH-HHHHHHHHHH-HHHhhhcCCCC------------------------------
Q 023367 163 -KRFAVAAAMCILA--V--------RA-VVVQLAFYLH-MQTHVYRRPAV------------------------------ 199 (283)
Q Consensus 163 -Kr~pllaal~Il~--v--------~a-~iv~lg~~l~-~~t~~~g~p~~------------------------------ 199 (283)
|.....+..+.+. + .+ .++.+|..-. ...+..++|..
T Consensus 79 ~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~ 158 (285)
T TIGR02235 79 RSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS 158 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 2221111111100 0 00 0011111100 00111222221
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367 200 FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST 256 (283)
Q Consensus 200 ~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~ 256 (283)
++...+....-+.+.+.++...||++|+|.||+.|.||+|+++|+|++ .++..+|++
T Consensus 159 ~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~ 220 (285)
T TIGR02235 159 FSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVV 220 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHH
Confidence 111222223333355668889999999999999999999999999999 555666665
No 39
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.72 E-value=1.7e-16 Score=147.44 Aligned_cols=154 Identities=15% Similarity=0.082 Sum_probs=94.8
Q ss_pred HHhhhhcccc---hhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------
Q 023367 89 DAFYRFSRPH---TVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--------- 156 (283)
Q Consensus 89 ~a~~~l~RPh---t~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk--------- 156 (283)
++|.|++|++ ......++.+.|..+|... .+..+. ..++..+++.+++.+++|.+|||+|+|+|+
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~--~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPL--YLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcH--HHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence 3455555554 5555667777888887431 122111 112224556677899999999999999997
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhcCCC-----------------------
Q 023367 157 LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRRPA----------------------- 198 (283)
Q Consensus 157 iPplRlKr~pllaal~Il~v~a~iv---------------~lg~~l~~~t~~~g~p~----------------------- 198 (283)
+|++|++....+....++...++++ .+..+.| +..++...
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g 156 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATY--PFMKRITYWPQLVLGLAFGWGALMGWAAVTG 156 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--chhcccccccHHHHHHHHHHHHHHHHHHHcC
Confidence 8899997766444333322211111 1111112 21111110
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 199 VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 199 ~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
..+...+++....++++.+++++++++|+|+|++.|++|+|+++|+|++
T Consensus 157 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~ 205 (281)
T TIGR01474 157 DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTK 205 (281)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhH
Confidence 0111223344455677889999999999999999999999999999888
No 40
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.71 E-value=1.8e-16 Score=146.57 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=94.8
Q ss_pred HHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------ccc
Q 023367 89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPL 159 (283)
Q Consensus 89 ~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------iPp 159 (283)
|+|+|++||++++.+.++++.|+++|.+.. +.++. .++..+++++++.+++|.+|||+|+|+|+ +|+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 468999999999999999999999985432 12321 12235668888999999999999999999 888
Q ss_pred chhhHHHHHHHHHHHHHHHH-------------HHHHHH--HHHHHHhhhcCCCCcc-----------------------
Q 023367 160 LRWKRFAVAAAMCILAVRAV-------------VVQLAF--YLHMQTHVYRRPAVFS----------------------- 201 (283)
Q Consensus 160 lRlKr~pllaal~Il~v~a~-------------iv~lg~--~l~~~t~~~g~p~~~~----------------------- 201 (283)
+|++.........++...++ +..++. +.+.++...|+-..++
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~ 156 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSI 156 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88877654332222211111 111121 1122231222211111
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 202 -KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 202 -~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
...+++...++++...-.-.-..+|.|.||+.|++|+|+++|+|++
T Consensus 157 ~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a 203 (280)
T TIGR01473 157 SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERIT 203 (280)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHH
Confidence 1111122222223233222334689999999999999999999988
No 41
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.71 E-value=3.4e-16 Score=146.35 Aligned_cols=157 Identities=20% Similarity=0.164 Sum_probs=95.4
Q ss_pred ccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc---------cccchhhH
Q 023367 96 RPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---------LPLLRWKR 164 (283)
Q Consensus 96 RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDk---------iPplRlKr 164 (283)
||+|...+..++++|..+|... ..+++. .++.++++++++++..|.+|||||.+ +|+ ++.+.++.
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~-~~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWL-HAFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 9999999999999999999654 255543 22336778899999999999999996 453 44444433
Q ss_pred HHHHHHHHHHH----HHHH---------------HHHHHHHHH-HHHhhhcCCCC------cch-------HH-------
Q 023367 165 FAVAAAMCILA----VRAV---------------VVQLAFYLH-MQTHVYRRPAV------FSK-------PL------- 204 (283)
Q Consensus 165 ~pllaal~Il~----v~a~---------------iv~lg~~l~-~~t~~~g~p~~------~~~-------~v------- 204 (283)
..+.....++. +.++ .+.+|.... ...+..++|.. +.. ++
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y 156 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY 156 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH
Confidence 32221111111 0111 111111100 00101122221 000 11
Q ss_pred ----------HHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367 205 ----------IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST 256 (283)
Q Consensus 205 ----------~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~ 256 (283)
.+...-..+.+.++...||+||+|+|++.|.||+|+++|+|++ +++..+|+.
T Consensus 157 vq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~ 223 (284)
T TIGR00751 157 LQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVC 223 (284)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHH
Confidence 1111123355668999999999999999999999999999999 566666655
No 42
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.71 E-value=4.2e-16 Score=146.01 Aligned_cols=159 Identities=17% Similarity=0.110 Sum_probs=98.4
Q ss_pred HHHHHhhhhcccchhHHHHHHHH---HHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 023367 86 NALDAFYRFSRPHTVIGTALSIV---SVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (283)
Q Consensus 86 ~~l~a~~~l~RPht~iga~l~vl---~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------ 156 (283)
+++++|+|++|.++..++.+..+ .|..++.......++ ..++..+++.+++.+++|++|||+|+||||
T Consensus 4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~---~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~ 80 (289)
T PLN02809 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDL---KMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTK 80 (289)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence 56899999999999998877662 344444311111112 112235667788899999999999999997
Q ss_pred ---cccchhhHHHHHHHHHHHHHHHHHH------------HHHHH-HHHHHhhhcCCC----------C-----------
Q 023367 157 ---LPLLRWKRFAVAAAMCILAVRAVVV------------QLAFY-LHMQTHVYRRPA----------V----------- 199 (283)
Q Consensus 157 ---iPplRlKr~pllaal~Il~v~a~iv------------~lg~~-l~~~t~~~g~p~----------~----------- 199 (283)
+|++|++....+....++.+.++.+ .++.. ...+++.|+... .
T Consensus 81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~av~ 160 (289)
T PLN02809 81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVK 160 (289)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHhcCcchHHHHHHHHHHHHHHHHHHHh
Confidence 8999998776544333222111110 00111 111122221110 0
Q ss_pred --cchHHH-HHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 200 --FSKPLI-FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 200 --~~~~v~-~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.+...+ .+.....+++.+.+++.+++|+|+||+.|++|+|+++|++..
T Consensus 161 g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~ 211 (289)
T PLN02809 161 GSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTK 211 (289)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHH
Confidence 011111 133344456788999999999999999999999999999965
No 43
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.65 E-value=1.7e-15 Score=143.43 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=35.6
Q ss_pred HHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367 216 VVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST 256 (283)
Q Consensus 216 ~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~ 256 (283)
++|+++||++|+||||+.|++|+|+++|++++ .+..++|++
T Consensus 193 ~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~ 238 (307)
T PRK13591 193 FINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLV 238 (307)
T ss_pred HHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999 444555544
No 44
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.62 E-value=1.5e-14 Score=136.32 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=98.7
Q ss_pred HHHHHhhhhcccchhHHHHH---HHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 023367 86 NALDAFYRFSRPHTVIGTAL---SIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (283)
Q Consensus 86 ~~l~a~~~l~RPht~iga~l---~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------ 156 (283)
+++++|+|++||+.+.++.+ +.+.|.+++....+ +. ..++..++...++.++++.+||+.|+|+|+
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 79 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SL---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK 79 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 35789999999998877654 44556555522211 11 122335667777888999999999999998
Q ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHH----------------H-HHHHHHHHhhhcC-----------CCC------
Q 023367 157 ---LPLLRWKRFAVAAAMCILAVRAVVVQ----------------L-AFYLHMQTHVYRR-----------PAV------ 199 (283)
Q Consensus 157 ---iPplRlKr~pllaal~Il~v~a~iv~----------------l-g~~l~~~t~~~g~-----------p~~------ 199 (283)
+|++|++....+....++.+.++.+. + .++...+++. || +..
T Consensus 80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~~-KR~t~~~~~vlg~~~a~~~l~g 158 (294)
T PRK12873 80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSA-KRWFAYPQAILALCWGFAVLIP 158 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-HhccccchHHHHHHHHhHHHHH
Confidence 89999987765544333322211110 0 0011111211 11 000
Q ss_pred -------cc--hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 200 -------FS--KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 200 -------~~--~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.+ ...+++...+++++.+.+++.+++|.|+|++.|++|+|++.|++..
T Consensus 159 w~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~ 215 (294)
T PRK12873 159 WAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL 215 (294)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH
Confidence 11 1222333566688899999999999999999999999999998655
No 45
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.61 E-value=2.9e-14 Score=134.81 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=96.1
Q ss_pred HHHHHhhhhcccchhHHHHHHHHHHHHHHhh---ccCC-C-ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----
Q 023367 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVE---KVSD-I-SPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---- 156 (283)
Q Consensus 86 ~~l~a~~~l~RPht~iga~l~vl~g~llA~~---~~~~-~-~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---- 156 (283)
++++.|.|++|.+.-+=+.=-+.+|.++|.. ...+ + .|. ...++...++.+++-.+++++|||+|+||||
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~R 80 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGG-IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPR 80 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCC-HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCC
Confidence 3578889999986666555556677778841 1111 0 011 1112225667788899999999999999999
Q ss_pred -----cccchhhHHHHHHHHHHHHHHH----H--------HHHHHHH-HHHHHhhhcCCCC-----------c-------
Q 023367 157 -----LPLLRWKRFAVAAAMCILAVRA----V--------VVQLAFY-LHMQTHVYRRPAV-----------F------- 200 (283)
Q Consensus 157 -----iPplRlKr~pllaal~Il~v~a----~--------iv~lg~~-l~~~t~~~g~p~~-----------~------- 200 (283)
+|++|++....+....+....+ . +..+++. +..+++ .||-.. +
T Consensus 81 T~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~-~KR~t~~~~~vLGl~~~~~~l~~~~ 159 (300)
T PRK12876 81 TSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPY-TKRVTFLCHWILGLVYYLAILMNFF 159 (300)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-HhcCCchhHHHHHHHHHHHHHHHHH
Confidence 8899997776443332211110 0 0011111 111222 222100 0
Q ss_pred ----c-hH------HHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 201 ----S-KP------LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 201 ----~-~~------v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
. .. .++.+...+++..+.+++++.+|+|+||+.|++|+|+++|++++
T Consensus 160 Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a 217 (300)
T PRK12876 160 AIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKA 217 (300)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhH
Confidence 0 00 11122333455568999999999999999999999999999987
No 46
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.49 E-value=1.6e-13 Score=122.00 Aligned_cols=140 Identities=26% Similarity=0.315 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------cccchhhHHHHHHHHHH
Q 023367 103 TALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKRFAVAAAMCI 173 (283)
Q Consensus 103 a~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------iPplRlKr~pllaal~I 173 (283)
+..+++.+...+.. ...++ ..++..++++++++.++|.+|||+|+|.|+ +|.+++++........+
T Consensus 4 ~~~~~l~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~ 78 (257)
T PF01040_consen 4 SFLPVLAGLALASG--GPFNW---PIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI 78 (257)
T ss_pred HHHHHHHHHHHHHc--CCCCH---HHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence 34556666333322 23333 122224556678899999999999999999 55667764432221111
Q ss_pred HHHHH---------------HHHHHHHHHHHHH-hhhcCCCC-----------------------cchHHHHHHHHHHHH
Q 023367 174 LAVRA---------------VVVQLAFYLHMQT-HVYRRPAV-----------------------FSKPLIFATAFMSFF 214 (283)
Q Consensus 174 l~v~a---------------~iv~lg~~l~~~t-~~~g~p~~-----------------------~~~~v~~lt~f~~lf 214 (283)
+.+.+ .+..+..+.|... ..++.+.. .+....+...+..++
T Consensus 79 ~~~l~l~l~~~~~~~~~~~~~~~~~~~~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T PF01040_consen 79 LLLLGLLLALLLGPWFLLILLLGFLLGLLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLL 158 (257)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHH
Confidence 11111 1111111233210 12222211 122333344454667
Q ss_pred HHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 215 SVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 215 s~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
.......+|++|+|||++.|++|+|+++|++++
T Consensus 159 ~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~ 191 (257)
T PF01040_consen 159 IFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKA 191 (257)
T ss_pred HHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHH
Confidence 778888889999999999999999999999999
No 47
>PRK08238 hypothetical protein; Validated
Probab=99.17 E-value=2.5e-10 Score=113.98 Aligned_cols=153 Identities=22% Similarity=0.167 Sum_probs=93.8
Q ss_pred CCchhhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-
Q 023367 78 KSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK- 156 (283)
Q Consensus 78 ~~~~~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk- 156 (283)
...+++.+..+++|+|++|||.+++..+..+ +.+.+.. ..+ +..+..++.++++..++.++++.+|||+|+|+||
T Consensus 181 ~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~--~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~ 256 (479)
T PRK08238 181 ERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGD--LQALLAALLAFLAFSLCASAVYILNDLLDLEADRA 256 (479)
T ss_pred ceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcc
Confidence 3445666778999999999999999998744 7776632 122 2112222335555557788889999999999999
Q ss_pred --------cccchhhHHHHHHHHHHHHHHHHH-----------HHHHHHHH--HHHhhhcC-CCC---------------
Q 023367 157 --------LPLLRWKRFAVAAAMCILAVRAVV-----------VQLAFYLH--MQTHVYRR-PAV--------------- 199 (283)
Q Consensus 157 --------iPplRlKr~pllaal~Il~v~a~i-----------v~lg~~l~--~~t~~~g~-p~~--------------- 199 (283)
+|++|++....+....++...+++ +.++.+.+ .+++++|+ +..
T Consensus 257 ~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ys~~lKr~~~~~~~~la~~~~lr~~~ 336 (479)
T PRK08238 257 HPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAYLALTLAYSLRLKRKVLVDVLTLAALYTLRIIA 336 (479)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHhcCCccccchHHHHHHHHHHHH
Confidence 889999766544433333222111 11111111 22322333 211
Q ss_pred ------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCC
Q 023367 200 ------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGI 235 (283)
Q Consensus 200 ------~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~Gi 235 (283)
.+.+.| +.++..++.+..++.|...|++++++.|-
T Consensus 337 G~~a~~~~~s~w-ll~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 337 GAAAIGVALSFW-LLAFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHhccCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 011122 22355566788999999999999998885
No 48
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.06 E-value=3.6e-09 Score=100.01 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=55.2
Q ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (283)
Q Consensus 84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------- 156 (283)
..+++++|+|++|||.|+...+... +.+.+... .+.. . +...+.++++..++.++++.+||++|+|+||
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~-~~~~-~-~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNL-LNPG-A-LLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhh-cccc-h-HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 3567899999999999999887444 44444221 1111 1 1122224445555778888999999999999
Q ss_pred --cccchhhHHHHHH
Q 023367 157 --LPLLRWKRFAVAA 169 (283)
Q Consensus 157 --iPplRlKr~plla 169 (283)
+|++|++....+.
T Consensus 83 RPlasG~is~~~A~~ 97 (295)
T PRK12324 83 RPIASGVVSVSLAYI 97 (295)
T ss_pred CCCCCCccCHHHHHH
Confidence 8899987665443
No 49
>PLN02776 prenyltransferase
Probab=98.99 E-value=1.8e-08 Score=97.20 Aligned_cols=71 Identities=18% Similarity=0.099 Sum_probs=53.2
Q ss_pred hcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------cccchhhH
Q 023367 94 FSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKR 164 (283)
Q Consensus 94 l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk---------iPplRlKr 164 (283)
+++|.-..+..+.++.|+++|.+...+ + ..++..+++.+++.+++|++||++|+|||+ +|++|+++
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~---~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAID--L---PGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCC--H---HHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 356777788888999999998543222 2 122335667788899999999999999997 99999987
Q ss_pred HHHHH
Q 023367 165 FAVAA 169 (283)
Q Consensus 165 ~plla 169 (283)
...+.
T Consensus 76 ~~A~~ 80 (341)
T PLN02776 76 PHAVA 80 (341)
T ss_pred HHHHH
Confidence 76444
No 50
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.5e-08 Score=91.51 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=101.9
Q ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 023367 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (283)
Q Consensus 84 ~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk------- 156 (283)
-..++++|++++.|.-+..-.+.++.|+.+|.. ...++ ..++.+++...++.+..+++|.|+|+|||+
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~---~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINP---LLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccH---HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 467899999999999999999999999999953 12233 122235556667778888999999999999
Q ss_pred --cccchhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHH--HHhhhcCC-----------CCcc-------
Q 023367 157 --LPLLRWKRFAVAAAMCILAVRA-------------VVVQLAFYLHM--QTHVYRRP-----------AVFS------- 201 (283)
Q Consensus 157 --iPplRlKr~pllaal~Il~v~a-------------~iv~lg~~l~~--~t~~~g~p-----------~~~~------- 201 (283)
+|.++++....++....+.+.+ .....|++.|. +|.+.||. ...|
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaA 168 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAA 168 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeee
Confidence 8999998887766655554432 22333444442 33344441 1111
Q ss_pred ------hHHHHHHHHHHHH------HHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 202 ------KPLIFATAFMSFF------SVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 202 ------~~v~~lt~f~~lf------s~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
..-+++.+.+++| ++++..-+| =++.|+--+|+.-|++.+
T Consensus 169 vtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~D------Y~~AgiPMlPvv~G~~~t 220 (304)
T COG0109 169 VTGSISLGAILLFAIIFLWTPPHFWALALKYKDD------YKAAGIPMLPVVKGERRT 220 (304)
T ss_pred eeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHH------HHHcCCCcccccccHHHH
Confidence 1233344555544 344433332 257899999999999999
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=97.88 E-value=3.2e-05 Score=73.28 Aligned_cols=168 Identities=17% Similarity=0.164 Sum_probs=90.9
Q ss_pred CchhhHHHHHHHhhhhcccchhHHHHHHH-HHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-
Q 023367 79 SPLNSVINALDAFYRFSRPHTVIGTALSI-VSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK- 156 (283)
Q Consensus 79 ~~~~~~~~~l~a~~~l~RPht~iga~l~v-l~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk- 156 (283)
+..+.-+.+.+.|-|++|-..-+||=+-. -+..-+|+....+..|. +..+-..=+.+++|-++++.|||+.|.|+|+
T Consensus 55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD~K 133 (353)
T KOG1381|consen 55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPS-IKMLALFGVGALLMRGAGCTINDLWDKDLDAK 133 (353)
T ss_pred hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccch-hHHHHHhcccHHHhccCCceehhhhhhhhhhh
Confidence 33344444589999999999888874311 12222222222333332 1111111234577899999999999999998
Q ss_pred --------cccchhhHHHHHHHHHHHH--HHHHHHHHHHHHH---HH------------------HhhhcCCCCc-----
Q 023367 157 --------LPLLRWKRFAVAAAMCILA--VRAVVVQLAFYLH---MQ------------------THVYRRPAVF----- 200 (283)
Q Consensus 157 --------iPplRlKr~pllaal~Il~--v~a~iv~lg~~l~---~~------------------t~~~g~p~~~----- 200 (283)
+-++++..+.....+..-. -.++++++-.|-- .. .+++|..+-|
T Consensus 134 VeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAllG 213 (353)
T KOG1381|consen 134 VERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGALLG 213 (353)
T ss_pred HhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeehhhhcchhHHHHHhhhcchhhhhc
Confidence 6667776665444332211 1233333322200 00 0011111110
Q ss_pred -ch------HHHHHHHHHH--HHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH
Q 023367 201 -SK------PLIFATAFMS--FFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 201 -~~------~v~~lt~f~~--lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a 247 (283)
+. +.+.+..+.+ .+++.-..+-.-+|-+-|.+-|+++.+.++|++.-
T Consensus 214 w~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK 269 (353)
T KOG1381|consen 214 WCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTK 269 (353)
T ss_pred chhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCc
Confidence 00 1111222222 34555566677899999999999999999997644
No 52
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=97.83 E-value=5.7e-05 Score=70.37 Aligned_cols=71 Identities=17% Similarity=0.025 Sum_probs=51.6
Q ss_pred HHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc
Q 023367 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK 156 (283)
Q Consensus 85 ~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E--IDk 156 (283)
-.+.+.|.--+||...-.+..++..|+.+|..+-....+-....++ .-++.+....++|.+|.|||.- ||+
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl-~a~avlavh~agnlvntyfdf~kgid~ 130 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFL-CAFAVLAVHCAGNLVNTYFDFIKGIDH 130 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHH-HHhhheeeecccchhhhhhhhhhcccc
Confidence 4567788888999999999999999999996533322233334444 3345566778899999999976 777
No 53
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=94.27 E-value=0.0085 Score=58.37 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=60.1
Q ss_pred hhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----
Q 023367 82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----- 156 (283)
Q Consensus 82 ~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~EIDk----- 156 (283)
+--.+.++.|||++.|.--.-..+...+|+.+|-+. +++ -.++..-+...+..+..|++||+++.+-|.
T Consensus 88 ~lp~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~---~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT 161 (409)
T KOG1380|consen 88 TLPGKYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSF---PTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRT 161 (409)
T ss_pred CCCcchHHHHHHhcccceEEEEeeeccccccccccC---CCc---chhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhh
Confidence 334567889999999997777778888899887332 332 234445556677788899999999999998
Q ss_pred ----cccchhhHHHHHH
Q 023367 157 ----LPLLRWKRFAVAA 169 (283)
Q Consensus 157 ----iPplRlKr~plla 169 (283)
+|.+|++.--.+.
T Consensus 162 ~~Rplv~g~isp~hA~~ 178 (409)
T KOG1380|consen 162 QNRPLVRGRISPLHAVT 178 (409)
T ss_pred cccccccCccChHHHHH
Confidence 8888886654443
No 54
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=70.35 E-value=97 Score=29.39 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.8
Q ss_pred HHHHHhhhhhhhhhhccc
Q 023367 139 MNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 139 ~n~~~ngINDyfD~EIDk 156 (283)
......-+||+-|+|-|+
T Consensus 195 ~~~~i~~~n~~~D~e~D~ 212 (306)
T TIGR02056 195 AGLGIAIVNDFKSVEGDR 212 (306)
T ss_pred HHHHHHHHHHccChHHHH
Confidence 455566799999999999
No 55
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=65.44 E-value=37 Score=27.45 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=43.3
Q ss_pred CchhhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023367 79 SPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE 153 (283)
Q Consensus 79 ~~~~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~~~~~~~~~~~~~lL~~lla~l~~n~~~ngINDyfD~E 153 (283)
+.|..+..+++.+| +.+.++.++++...+........+.-..+.+.+.++++.+...+ + ++|+..
T Consensus 6 ~~W~~ll~wl~~~~-----~~~~~a~lA~~mA~LR~~Y~g~~~~r~llea~lCg~lal~~~~~----L-~~~gl~ 70 (100)
T PF05106_consen 6 DFWAQLLAWLQSHW-----PQIYGALLAFVMALLRGAYGGGSWRRRLLEALLCGLLALFARSL----L-EYFGLP 70 (100)
T ss_pred cHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH----H-HHhCCC
Confidence 57899999999998 67778888888887777654444444455555555555554443 3 566643
No 56
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=57.01 E-value=1.6e+02 Score=27.05 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=15.3
Q ss_pred HHHHHHHhhhhhhhhhhccc
Q 023367 137 LMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 137 l~~n~~~ngINDyfD~EIDk 156 (283)
++.+.....+||.-|+|-|+
T Consensus 171 fl~~~~~~~~~d~~D~e~D~ 190 (285)
T PRK12872 171 FLKSFIREIVFDIKDIEGDR 190 (285)
T ss_pred HHHHHHHHHHHhcccchhHH
Confidence 34455556789999999999
No 57
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=52.90 E-value=1.9e+02 Score=26.76 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhhhhhhhccc
Q 023367 136 ALMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 136 ~l~~n~~~ngINDyfD~EIDk 156 (283)
.++-+.....+||.-|+|-|+
T Consensus 167 ~~~w~~~~~~i~~~~D~e~D~ 187 (282)
T TIGR01475 167 VGFWIAGFDLIYAIQDYEFDR 187 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhHH
Confidence 344445555699999999998
No 58
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=51.81 E-value=2.2e+02 Score=27.21 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.7
Q ss_pred HHHHHHhhhhhhhhhhccc
Q 023367 138 MMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 138 ~~n~~~ngINDyfD~EIDk 156 (283)
+....+...||+-|+|-||
T Consensus 185 ll~~~IL~~Nn~rD~e~D~ 203 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDL 203 (304)
T ss_pred HHHHHHHHHcCCcchhhHH
Confidence 3456677799999999999
No 59
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=50.62 E-value=1.5e+02 Score=28.23 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.3
Q ss_pred HHHHhhhhhhhhhhccc
Q 023367 140 NIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 140 n~~~ngINDyfD~EIDk 156 (283)
......+||+-|+|-||
T Consensus 202 ~~~~~~~~d~~D~e~D~ 218 (314)
T PRK07566 202 AHGIMTLNDFKSVEGDR 218 (314)
T ss_pred HHHHHHHHHHHHhHhHH
Confidence 44556899999999999
No 60
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=49.52 E-value=2.2e+02 Score=26.41 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.2
Q ss_pred HHHHHHhhhhhhhhhhccc
Q 023367 138 MMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 138 ~~n~~~ngINDyfD~EIDk 156 (283)
+.......+||+-|+|-||
T Consensus 179 l~~~~~~~~n~~~D~~~D~ 197 (293)
T PRK06080 179 LLIGAVLLANNIRDIETDR 197 (293)
T ss_pred HHHHHHHHhcCCCcchhHH
Confidence 3455566789999999999
No 61
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=49.31 E-value=2.4e+02 Score=27.00 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhccc
Q 023367 134 AAALMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 134 la~l~~n~~~ngINDyfD~EIDk 156 (283)
++..+....+...|++-|+|-|+
T Consensus 196 lp~g~l~~~ill~Nn~~D~e~D~ 218 (317)
T PRK13387 196 LPIIFTIANIMLANNLRDLDEDI 218 (317)
T ss_pred HHHHHHHHHHHHhcCCccchhHH
Confidence 34444566677899999999999
No 62
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=47.76 E-value=2.5e+02 Score=26.49 Aligned_cols=20 Identities=15% Similarity=-0.036 Sum_probs=15.2
Q ss_pred HHHHHHHhhhhhhhhhhccc
Q 023367 137 LMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 137 l~~n~~~ngINDyfD~EIDk 156 (283)
++-+..-..+|++-|+|-||
T Consensus 169 ~~w~~~~~~i~a~~D~e~D~ 188 (284)
T PRK12888 169 GLWIGGFDLIYACQDAEVDR 188 (284)
T ss_pred HHHHHHHHHHHHhhhHHHHH
Confidence 33444556799999999998
No 63
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=46.19 E-value=2.9e+02 Score=26.90 Aligned_cols=34 Identities=26% Similarity=0.149 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccc-----cccchhhHHH
Q 023367 133 IAAALMMNIYIVGLNQLSDIEIDK-----LPLLRWKRFA 166 (283)
Q Consensus 133 lla~l~~n~~~ngINDyfD~EIDk-----iPplRlKr~p 166 (283)
-+++......++..|...|+|-|+ =++.|+.+..
T Consensus 182 slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~ 220 (303)
T COG1575 182 SLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKN 220 (303)
T ss_pred HHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHh
Confidence 345556677788899999999999 4555664443
No 64
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=45.91 E-value=2.5e+02 Score=26.00 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.1
Q ss_pred HHHHhhhhhhhhhhccc
Q 023367 140 NIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 140 n~~~ngINDyfD~EIDk 156 (283)
......+||+-|+|-|+
T Consensus 174 ~~~i~~~nd~~D~~~D~ 190 (283)
T TIGR01476 174 AHGIMTLNDFKSVEGDR 190 (283)
T ss_pred HHHHHHHHhccchhhHH
Confidence 44456799999999999
No 65
>PRK13592 ubiA prenyltransferase; Provisional
Probab=45.83 E-value=48 Score=32.12 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCChhhhhhc
Q 023367 211 MSFFSVVIALFKDVPDLEGDKTF 233 (283)
Q Consensus 211 ~~lfs~~rei~KDI~DIEGDr~~ 233 (283)
+++++.+-++++|.-|.|=||.+
T Consensus 55 vf~~~~~gniiNDy~D~EIDrIN 77 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRRL 77 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhhc
Confidence 44567778999999999999876
No 66
>PLN00012 chlorophyll synthetase; Provisional
Probab=44.98 E-value=3.2e+02 Score=27.05 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhhhhhhccc
Q 023367 138 MMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 138 ~~n~~~ngINDyfD~EIDk 156 (283)
+.+.....+|||-|+|-|+
T Consensus 263 l~~lai~ivnd~~Die~Dr 281 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEGDR 281 (375)
T ss_pred HHHHHHHHHhhhcchhhHH
Confidence 4455566799999999999
No 67
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=41.79 E-value=17 Score=32.00 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCChhhhh----------hcCCcccchhcchhhH
Q 023367 210 FMSFFSVVIALFKDVPDLEGDK----------TFGIRTFTVRLGQKRV 247 (283)
Q Consensus 210 f~~lfs~~rei~KDI~DIEGDr----------~~GirTLai~lG~k~a 247 (283)
+..-+.++-.+.+|+.|+.+|. +.|..|+|+...++..
T Consensus 154 ~~~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~ 201 (236)
T cd00867 154 YGRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERA 201 (236)
T ss_pred HHHHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHH
Confidence 3334455667999999999988 8999999999996666
No 68
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.72 E-value=3.1e+02 Score=25.69 Aligned_cols=69 Identities=22% Similarity=0.201 Sum_probs=40.9
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcC---C-CCcchHHHHHHHHHHHHHHHHH
Q 023367 151 DIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHM-QTHVYRR---P-AVFSKPLIFATAFMSFFSVVIA 219 (283)
Q Consensus 151 D~EIDkiPplRlKr~pllaal~Il~v~a~iv~lg~~l~~-~t~~~g~---p-~~~~~~v~~lt~f~~lfs~~re 219 (283)
|..-|+|-+.|-||..+++=+..-++++++-..|+.+.. |+-.-.. | ...+..-.+...|.++++++-.
T Consensus 89 D~~f~qISsv~~RkraVl~Dl~~SalwtflwfvGFc~l~nqwqvs~p~~~~~~a~saraaIafsffSilsW~~~ 162 (233)
T KOG4016|consen 89 DVYFPQISSVKDRKRAVLADLGVSALWAFLWFVGFCFLANQWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQ 162 (233)
T ss_pred HhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHH
Confidence 555667788887888888777776777877777775443 3322111 1 1233344555566666666433
No 69
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=39.44 E-value=3.5e+02 Score=25.84 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhhhhhhhccc
Q 023367 137 LMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 137 l~~n~~~ngINDyfD~EIDk 156 (283)
++.+.....+||+-|+|=|+
T Consensus 192 ~~~~~~~~l~~di~D~egD~ 211 (308)
T PRK12887 192 LVFTFAIAIFKDIPDMEGDR 211 (308)
T ss_pred HHHHHHHHHHHhccchhhHH
Confidence 34455666799999999999
No 70
>PLN02922 prenyltransferase
Probab=38.78 E-value=2.5e+02 Score=27.05 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.8
Q ss_pred HHHHHHhhhhhhhhhhccc
Q 023367 138 MMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 138 ~~n~~~ngINDyfD~EIDk 156 (283)
+....+...|++-|+|-|+
T Consensus 199 ll~~~iL~~Nn~rD~e~D~ 217 (315)
T PLN02922 199 LTTTLILFCSHFHQIDGDR 217 (315)
T ss_pred HHHHHHHHHccCcchhhHH
Confidence 3455677899999999999
No 71
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=35.71 E-value=4e+02 Score=25.48 Aligned_cols=14 Identities=21% Similarity=0.038 Sum_probs=11.0
Q ss_pred Hhhhhhhhhhhccc
Q 023367 143 IVGLNQLSDIEIDK 156 (283)
Q Consensus 143 ~ngINDyfD~EIDk 156 (283)
-..++++.|+|-|+
T Consensus 208 ~~~~~a~~D~e~D~ 221 (314)
T PRK12878 208 YDTIYAHQDKEDDA 221 (314)
T ss_pred HHHHHHhhhHhhHH
Confidence 33567889999998
No 72
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=34.59 E-value=3e+02 Score=25.41 Aligned_cols=20 Identities=20% Similarity=0.121 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhhhhhhhccc
Q 023367 137 LMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 137 l~~n~~~ngINDyfD~EIDk 156 (283)
++.+.....+||+-|+|-|+
T Consensus 164 f~~~~~~~~~~~~~D~~~D~ 183 (279)
T PRK09573 164 FFSTWSREIVKDIEDIEGDL 183 (279)
T ss_pred HHHHHHHHHHhhhhhhhhHH
Confidence 33444555679999999998
No 73
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=31.04 E-value=4.2e+02 Score=24.28 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=14.6
Q ss_pred HHHHHHhhhhhhhhhhccc
Q 023367 138 MMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 138 ~~n~~~ngINDyfD~EIDk 156 (283)
+.+.....+||+.|+|-|+
T Consensus 166 ~~~~~~~~~~~~~D~e~D~ 184 (279)
T PRK12884 166 LMTLGREIMKDIEDVEGDR 184 (279)
T ss_pred HHHHHHHHHHHhhhhhhHH
Confidence 3344456799999999998
No 74
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=29.88 E-value=92 Score=36.57 Aligned_cols=83 Identities=22% Similarity=0.244 Sum_probs=40.9
Q ss_pred hhhhhhhhccc------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCcchHHHHHHHHH
Q 023367 146 LNQLSDIEIDK------------LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRR--PAVFSKPLIFATAFM 211 (283)
Q Consensus 146 INDyfD~EIDk------------iPplRlKr~pllaal~Il~v~a~iv~lg~~l~~~t~~~g~--p~~~~~~v~~lt~f~ 211 (283)
+||.||.--|- -|-+-|=....-....|.+..++++++.+..++ -|+. +...++..-.+.-++
T Consensus 2221 V~dFFd~~e~m~nEM~WQrklr~~p~l~W~s~~mslW~sisFn~av~iN~lVAffY---Pf~~~~~g~ls~l~sll~W~a 2297 (2706)
T KOG3533|consen 2221 VTDFFDEWETMYNEMIWQRKLRDRPWLSWCARRMSLWTSISFNLAVIINALVAFFY---PFPEHSNGSLSSLGSLLSWFA 2297 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHhhhhHhhhhhhhHHHHHHHHHHhcc---CCCCCCCcchhhHHHHHHHHH
Confidence 56666654433 566666333333344455677778776654332 2332 223332222222333
Q ss_pred HHHHHHHHHHhcCCChhhhhhcCCccc
Q 023367 212 SFFSVVIALFKDVPDLEGDKTFGIRTF 238 (283)
Q Consensus 212 ~lfs~~rei~KDI~DIEGDr~~GirTL 238 (283)
.++++.+...- + |.+|+||+
T Consensus 2298 v~~s~~i~~~l--~-----k~~gir~~ 2317 (2706)
T KOG3533|consen 2298 VFISFLIAHYL--R-----KIYGIRTI 2317 (2706)
T ss_pred HHHHHHHHHHh--c-----chhhhHHH
Confidence 44444444332 2 67888884
No 75
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=29.02 E-value=1.4e+02 Score=28.11 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=12.0
Q ss_pred HHHHhhhhhhhhhhccc
Q 023367 140 NIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 140 n~~~ngINDyfD~EIDk 156 (283)
+..-..+|.+.|+|-|+
T Consensus 175 ~~~~~~~~a~~D~e~D~ 191 (291)
T PRK12886 175 VAGFDILYALQDLEFDR 191 (291)
T ss_pred HHHHHHHHHhccHHhHH
Confidence 33333477889999998
No 76
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=28.77 E-value=4.8e+02 Score=24.22 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhhhhhhccc
Q 023367 137 LMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 137 l~~n~~~ngINDyfD~EIDk 156 (283)
++.+..--.+|+..|+|-|+
T Consensus 175 ~~w~~~~~~~~a~~D~e~D~ 194 (285)
T PRK12847 175 IFWTIGYDTIYAYQDKKDDL 194 (285)
T ss_pred HHHHHHHHHHHHhccHhhHH
Confidence 33444444688999999999
No 77
>PRK13591 ubiA prenyltransferase; Provisional
Probab=28.59 E-value=3.9e+02 Score=26.00 Aligned_cols=36 Identities=8% Similarity=-0.024 Sum_probs=26.1
Q ss_pred hhcCCCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhc
Q 023367 193 VYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTF 233 (283)
Q Consensus 193 ~~g~p~~~~~~v~~lt~f~~lfs~~rei~KDI~DIEGDr~~ 233 (283)
+.|.+..++..+ ...+...+.++.||.-|.|-|+.+
T Consensus 54 L~g~~~~~~~~~-----~~~L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 54 LLGLQSSILTCI-----AGGLIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HhCCCcchHHHH-----HHHHHHHHHHHHhhhccchhhhcc
Confidence 566666654333 234567789999999999999885
No 78
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=27.24 E-value=4.2e+02 Score=24.87 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccc
Q 023367 204 LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTF 238 (283)
Q Consensus 204 v~~lt~f~~lfs~~rei~KDI~DIEGDr~~GirTL 238 (283)
.++++.+.++|-+..+..+.++.++-|..+=.||+
T Consensus 128 ~i~i~~~~~ffpi~int~~Gvr~v~~~~~~~ar~l 162 (258)
T COG0600 128 KIVIAVLGAFFPILINTLDGVRSVDPDLLELARTL 162 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 45555668889999999999999999987766654
No 79
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=26.27 E-value=3.5e+02 Score=26.73 Aligned_cols=13 Identities=8% Similarity=-0.225 Sum_probs=6.4
Q ss_pred cccchhhHHHHHH
Q 023367 157 LPLLRWKRFAVAA 169 (283)
Q Consensus 157 iPplRlKr~plla 169 (283)
+|..|.+....+.
T Consensus 201 ~Pn~~v~~r~al~ 213 (412)
T PRK04214 201 VPNHFVPLRHALP 213 (412)
T ss_pred cCCCccchHHhHH
Confidence 5655554444333
No 80
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=25.39 E-value=5.8e+02 Score=24.07 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=16.0
Q ss_pred HHHHHHhhhhhhhhhhccc
Q 023367 138 MMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 138 ~~n~~~ngINDyfD~EIDk 156 (283)
+....+...|+.-|+|-|+
T Consensus 172 l~~~~iL~~Nn~rD~e~D~ 190 (285)
T TIGR02235 172 LATTLILFCSHFHQVEDDL 190 (285)
T ss_pred HHHHHHHHhcCCccchhHH
Confidence 3466777899999999999
No 81
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=24.19 E-value=6.2e+02 Score=24.01 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhccc
Q 023367 134 AAALMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 134 la~l~~n~~~ngINDyfD~EIDk 156 (283)
+++++-+...-.+||+.|+|-|+
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~ 204 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDR 204 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Confidence 34555566677899999999999
No 82
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=24.14 E-value=5.5e+02 Score=23.36 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=6.2
Q ss_pred HHHHhhhhhhhhhh
Q 023367 140 NIYIVGLNQLSDIE 153 (283)
Q Consensus 140 n~~~ngINDyfD~E 153 (283)
+..-.++|+.||+|
T Consensus 101 ~~l~~~ln~i~~~~ 114 (259)
T TIGR00765 101 NNIDSTLNKIWRVK 114 (259)
T ss_pred HHHHHHHHHHhCCC
Confidence 33334444444444
No 83
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=23.55 E-value=4.5e+02 Score=24.83 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=14.7
Q ss_pred HHHHHHhhhhhhhhhhccc
Q 023367 138 MMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 138 ~~n~~~ngINDyfD~EIDk 156 (283)
+.....-.+|++-|+|-|+
T Consensus 176 l~~~~~~~in~i~Die~D~ 194 (282)
T PRK12875 176 LWAMGMHTFSAIPDIEPDR 194 (282)
T ss_pred HHHHHHHHHHhccCHHHHH
Confidence 3444455789999999999
No 84
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=22.92 E-value=6.2e+02 Score=23.54 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhhhhhhhccc
Q 023367 137 LMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 137 l~~n~~~ngINDyfD~EIDk 156 (283)
++-+..-..+|++.|+|-|+
T Consensus 170 ~lw~~~~~~~~a~~D~e~D~ 189 (281)
T TIGR01474 170 ILWTLGYDTIYAMQDKEDDI 189 (281)
T ss_pred HHHHHHHHHHHHHhhHHhHH
Confidence 33344455689999999999
No 85
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=22.75 E-value=6.5e+02 Score=23.72 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=15.6
Q ss_pred HHHHHHhhhhhhhhhhccc
Q 023367 138 MMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 138 ~~n~~~ngINDyfD~EIDk 156 (283)
+....+...|+.-|+|-|+
T Consensus 175 ~l~~~il~~Nn~~D~~~D~ 193 (284)
T TIGR00751 175 LLACAVLNINNLRDIPTDA 193 (284)
T ss_pred HHHHHHHHHcCcccchhHH
Confidence 3456677799999999999
No 86
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=22.30 E-value=3.8e+02 Score=20.83 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=27.2
Q ss_pred chhhHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Q 023367 80 PLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVE 116 (283)
Q Consensus 80 ~~~~~~~~l~a~~~l~RPht~iga~l~vl~g~llA~~ 116 (283)
..|+....-+..++..|.-++++++++++++.+....
T Consensus 6 ~y~~~a~~~q~~~~~~~~~~i~~~~~~a~i~~l~~~~ 42 (112)
T PF14015_consen 6 WYDKKARRAQRRYRRLRIASIILSVLGAVIPVLASLS 42 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677778888888888888888888777754443
No 87
>COG2149 Predicted membrane protein [Function unknown]
Probab=20.71 E-value=5.3e+02 Score=21.95 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh--ccc---ccc
Q 023367 132 AIAAALMMNIYIVGLNQLSDIE--IDK---LPL 159 (283)
Q Consensus 132 ~lla~l~~n~~~ngINDyfD~E--IDk---iPp 159 (283)
++++.+.+-....|.|.++|.| +|+ .|.
T Consensus 61 ~fii~~gil~~a~g~~r~~~~~~amrr~~~~p~ 93 (120)
T COG2149 61 VFLILVGILLAALGALRWQRVERAMRRGFYLPY 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 3444444455556899999998 777 664
No 88
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=20.67 E-value=7.2e+02 Score=23.44 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhhhhhhhhccc
Q 023367 135 AALMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 135 a~l~~n~~~ngINDyfD~EIDk 156 (283)
++++-+..-..+|++-|+|-|+
T Consensus 175 ~~~~w~~~~~~~~a~~D~~~D~ 196 (291)
T PRK12874 175 GVMFWVAGFDLLYSLQDMEFDK 196 (291)
T ss_pred HHHHHHHHHHHHHHhccHHHHH
Confidence 3344555556789999999998
No 89
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=20.27 E-value=57 Score=27.23 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCChhhhhhc--CCcccchhcchh
Q 023367 212 SFFSVVIALFKDVPDLEGDKTF--GIRTFTVRLGQK 245 (283)
Q Consensus 212 ~lfs~~rei~KDI~DIEGDr~~--GirTLai~lG~k 245 (283)
.....+..+.+|+.|+++|.+. |..|+|..+-.+
T Consensus 150 ~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~ 185 (243)
T cd00385 150 RALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALE 185 (243)
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHH
Confidence 3455667899999999999998 899999876443
Done!