Query 023367
Match_columns 283
No_of_seqs 186 out of 421
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 33.4 25 0.00086 32.1 3.0 34 214-247 208-252 (297)
2 3lsn_A Geranyltranstransferase 25.8 23 0.00077 32.5 1.3 34 214-247 215-259 (304)
3 3ts7_A Geranyltranstransferase 25.0 22 0.00076 33.0 1.1 33 215-247 222-265 (324)
4 3lom_A Geranyltranstransferase 24.6 24 0.00083 32.5 1.3 32 216-247 224-266 (313)
5 3kra_B Geranyl diphosphate syn 24.5 1.7E+02 0.0058 26.1 6.9 44 213-256 71-119 (274)
6 2hdi_B Colicin-IA; outer membr 22.8 24 0.00083 27.5 0.8 18 215-232 70-92 (113)
7 4f62_A Geranyltranstransferase 22.0 27 0.00092 32.3 1.0 34 214-247 214-258 (317)
8 3llw_A Geranyltranstransferase 21.5 31 0.0011 31.7 1.3 31 217-247 225-264 (311)
9 3p8r_A Geranyltranstransferase 20.3 31 0.0011 31.5 1.0 38 217-254 224-272 (302)
10 2h8o_A Geranyltranstransferase 20.1 32 0.0011 32.0 1.1 33 216-248 256-299 (335)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=33.38 E-value=25 Score=32.09 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCChhh-----------hhhcCCcccchhcchhhH
Q 023367 214 FSVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 214 fs~~rei~KDI~DIEG-----------Dr~~GirTLai~lG~k~a 247 (283)
+-++=.|..|+-|+.| |.+.|..|+|+.+|.+++
T Consensus 208 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a 252 (297)
T 3m0g_A 208 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGA 252 (297)
T ss_dssp HHHHHHHHTTCC---------------------CCHHHHHCSSHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHH
Confidence 3344559999999987 457899999999999988
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=25.77 E-value=23 Score=32.52 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCChhh-----------hhhcCCcccchhcchhhH
Q 023367 214 FSVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 214 fs~~rei~KDI~DIEG-----------Dr~~GirTLai~lG~k~a 247 (283)
+-++=.|..|+-|+.| |.+.|..|+|+.+|.+++
T Consensus 215 lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a 259 (304)
T 3lsn_A 215 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAA 259 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHH
Confidence 3444559999999987 557899999999999998
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=24.97 E-value=22 Score=32.96 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCChhh-----------hhhcCCcccchhcchhhH
Q 023367 215 SVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 215 s~~rei~KDI~DIEG-----------Dr~~GirTLai~lG~k~a 247 (283)
-++=.|..|+-|+.| |.+.|..|+|+.+|.+++
T Consensus 222 GlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a 265 (324)
T 3ts7_A 222 GLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGA 265 (324)
T ss_dssp HHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHH
Confidence 344459999999877 567899999999999998
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=24.62 E-value=24 Score=32.50 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=23.2
Q ss_pred HHHHHHhcCCChhh-----------hhhcCCcccchhcchhhH
Q 023367 216 VVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 216 ~~rei~KDI~DIEG-----------Dr~~GirTLai~lG~k~a 247 (283)
++=.|..|+-|+.| |.+.|..|+|+.+|.+++
T Consensus 224 laFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a 266 (313)
T 3lom_A 224 LVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQL 266 (313)
T ss_dssp HHHHHHHHHHHHHCC---------------CCCHHHHSCHHHH
T ss_pred HHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHH
Confidence 34458999999877 457899999999999998
No 5
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=24.50 E-value=1.7e+02 Score=26.10 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCcccchhcchhhH-----HHHHHHHHh
Q 023367 213 FFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRV-----SVLDLYFST 256 (283)
Q Consensus 213 lfs~~rei~KDI~DIEGDr~~GirTLai~lG~k~a-----~ll~~aY~~ 256 (283)
++-.+--|-.||++.+.|.+.|.-|.=.++|...+ .++..+|-.
T Consensus 71 liH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 119 (274)
T 3kra_B 71 LVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFEL 119 (274)
T ss_dssp HHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 44455668899996666778999999999998876 444444443
No 6
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=22.77 E-value=24 Score=27.49 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=13.9
Q ss_pred HHHHHHHhcC-----CChhhhhh
Q 023367 215 SVVIALFKDV-----PDLEGDKT 232 (283)
Q Consensus 215 s~~rei~KDI-----~DIEGDr~ 232 (283)
.--++|++|- ||+|||++
T Consensus 70 dy~~nil~drnpvvtedvegdkk 92 (113)
T 2hdi_B 70 DYKRNILNDRNPVVTEDVEGDKK 92 (113)
T ss_dssp HHHHHTSCCCCSCCSSCHHHHHH
T ss_pred hhhhhhhcCCCCeeecccccchh
Confidence 3457788874 89999986
No 7
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=22.01 E-value=27 Score=32.31 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCChhh-----------hhhcCCcccchhcchhhH
Q 023367 214 FSVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 214 fs~~rei~KDI~DIEG-----------Dr~~GirTLai~lG~k~a 247 (283)
+-++=.|..|+-|+.| |.+.|..|+|+.+|.+++
T Consensus 214 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a 258 (317)
T 4f62_A 214 IGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGA 258 (317)
T ss_dssp HHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHH
Confidence 3444558999999876 456799999999999988
No 8
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=21.51 E-value=31 Score=31.74 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=24.0
Q ss_pred HHHHHhcCCChhhhh---------hcCCcccchhcchhhH
Q 023367 217 VIALFKDVPDLEGDK---------TFGIRTFTVRLGQKRV 247 (283)
Q Consensus 217 ~rei~KDI~DIEGDr---------~~GirTLai~lG~k~a 247 (283)
+=.|..|+-|+.||. +.|..|+|+.+|.+++
T Consensus 225 aFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a 264 (311)
T 3llw_A 225 CFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERA 264 (311)
T ss_dssp HHHHHHHHHHHHC-------------CCSCHHHHHCHHHH
T ss_pred HHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHH
Confidence 344999999998875 5799999999999988
No 9
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=20.32 E-value=31 Score=31.54 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHHHHhcCCChhhh-----------hhcCCcccchhcchhhHHHHHHHH
Q 023367 217 VIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVSVLDLYF 254 (283)
Q Consensus 217 ~rei~KDI~DIEGD-----------r~~GirTLai~lG~k~a~ll~~aY 254 (283)
+=.|..|+-|+.|| .+.|..|+|+.+|.+++--.+--|
T Consensus 224 aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 272 (302)
T 3p8r_A 224 AFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTL 272 (302)
T ss_dssp HHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 34488999888764 578999999999999983333333
No 10
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=20.14 E-value=32 Score=32.00 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=22.5
Q ss_pred HHHHHHhcCCChhhh-----------hhcCCcccchhcchhhHH
Q 023367 216 VVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVS 248 (283)
Q Consensus 216 ~~rei~KDI~DIEGD-----------r~~GirTLai~lG~k~a~ 248 (283)
++=.|..|+-|+.|| .+.|..|+|+.+|.+++-
T Consensus 256 lAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~ 299 (335)
T 2h8o_A 256 LSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAR 299 (335)
T ss_dssp HHHHHHHHHHHHC-----------------CCCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHH
Confidence 344589999998765 568999999999988883
Done!