Query 023367
Match_columns 283
No_of_seqs 186 out of 421
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 05:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023367.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023367hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 22.5 10 0.00076 31.8 0.6 29 219-247 214-253 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 18.4 17 0.0012 30.6 1.0 29 219-247 220-259 (299)
3 d1rqja_ a.128.1.1 (A:) Farnesy 18.1 46 0.0034 27.6 3.9 35 213-247 75-110 (299)
4 d1rtra_ a.128.1.1 (A:) Farnesy 10.3 1E+02 0.0074 25.2 3.8 35 213-247 72-107 (290)
5 d2c9wa1 a.271.1.1 (A:149-198) 8.7 47 0.0034 21.3 0.7 19 146-165 23-42 (50)
6 d1fpsa_ a.128.1.1 (A:) Farnesy 8.3 33 0.0024 29.2 -0.3 30 218-247 234-273 (348)
7 d1v4ea_ a.128.1.1 (A:) Octopre 7.6 43 0.0032 27.6 0.2 31 217-247 191-231 (280)
8 d1uf2a_ e.28.1.2 (A:) RDV p3 { 6.9 84 0.0061 30.1 1.8 22 135-156 554-575 (967)
9 d2q80a1 a.128.1.1 (A:6-296) Ge 6.2 63 0.0046 26.6 0.5 28 217-244 178-216 (291)
10 d1iyjb1 a.170.1.1 (B:2403-2598 4.6 1E+02 0.0073 25.0 0.7 14 143-156 178-194 (196)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=22.48 E-value=10 Score=31.84 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=19.9
Q ss_pred HHHhcCCChhh-----------hhhcCCcccchhcchhhH
Q 023367 219 ALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 219 ei~KDI~DIEG-----------Dr~~GirTLai~lG~k~a 247 (283)
.|..|+.|+.| |.+.|..|+|+.+|.+++
T Consensus 214 Qi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a 253 (290)
T d1rtra_ 214 QIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGA 253 (290)
T ss_dssp HHHHHHHHHHHHHCC-------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHH
Confidence 48899988875 556799999999999887
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=18.36 E-value=17 Score=30.58 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=24.5
Q ss_pred HHHhcCCChhh-----------hhhcCCcccchhcchhhH
Q 023367 219 ALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 219 ei~KDI~DIEG-----------Dr~~GirTLai~lG~k~a 247 (283)
.|..|+.|+.| |.+.|..|+|+.+|.+++
T Consensus 220 Qi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a 259 (299)
T d1rqja_ 220 QVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQA 259 (299)
T ss_dssp HHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHH
T ss_pred HHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHH
Confidence 38888888765 777899999999999887
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=18.13 E-value=46 Score=27.63 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCChhh-hhhcCCcccchhcchhhH
Q 023367 213 FFSVVIALFKDVPDLEG-DKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 213 lfs~~rei~KDI~DIEG-Dr~~GirTLai~lG~k~a 247 (283)
++-.+-.|-.||+|.+. |.+.|..|.-.++|...+
T Consensus 75 llH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~A 110 (299)
T d1rqja_ 75 CIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANA 110 (299)
T ss_dssp HHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHH
T ss_pred HHHHHHHHHccchhhhhhhcccccccceeeeCcchh
Confidence 34445557889999988 489999999999999888
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=10.31 E-value=1e+02 Score=25.24 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCChhhh-hhcCCcccchhcchhhH
Q 023367 213 FFSVVIALFKDVPDLEGD-KTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 213 lfs~~rei~KDI~DIEGD-r~~GirTLai~lG~k~a 247 (283)
++-.+--|-.||+|+++| .+.|.-|.-.++|...+
T Consensus 72 llH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~A 107 (290)
T d1rtra_ 72 MIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTA 107 (290)
T ss_dssp HHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHH
T ss_pred HHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHH
Confidence 444555688999999775 58899999999999877
No 5
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.66 E-value=47 Score=21.34 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=11.5
Q ss_pred hhhhhhhhcccccc-chhhHH
Q 023367 146 LNQLSDIEIDKLPL-LRWKRF 165 (283)
Q Consensus 146 INDyfD~EIDkiPp-lRlKr~ 165 (283)
||.-+| .||++|. -++|.+
T Consensus 23 In~~~d-~i~~LPLP~~Lk~Y 42 (50)
T d2c9wa1 23 INKCTG-AIWGLPLPTRLKDY 42 (50)
T ss_dssp HHHHCS-CGGGSSSCHHHHHH
T ss_pred HHhccC-CcccCCCCHHHHHH
Confidence 567777 8888552 344443
No 6
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=8.28 E-value=33 Score=29.24 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=23.6
Q ss_pred HHHHhcCCChhh----------hhhcCCcccchhcchhhH
Q 023367 218 IALFKDVPDLEG----------DKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 218 rei~KDI~DIEG----------Dr~~GirTLai~lG~k~a 247 (283)
=.|..|+-|+.| |.+.|..|+|+.+..++.
T Consensus 234 FQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~~ 273 (348)
T d1fpsa_ 234 FQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRV 273 (348)
T ss_dssp HHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHTC
T ss_pred HHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHhC
Confidence 348999988876 677789999999976543
No 7
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=7.64 E-value=43 Score=27.64 Aligned_cols=31 Identities=23% Similarity=0.544 Sum_probs=22.9
Q ss_pred HHHHHhcCCChhh----------hhhcCCcccchhcchhhH
Q 023367 217 VIALFKDVPDLEG----------DKTFGIRTFTVRLGQKRV 247 (283)
Q Consensus 217 ~rei~KDI~DIEG----------Dr~~GirTLai~lG~k~a 247 (283)
+-.|..|+.|+.| |.+.|..|+|+.++.++.
T Consensus 191 afQi~DD~ld~~~~~~~GK~~g~Dl~~gK~T~p~i~al~~~ 231 (280)
T d1v4ea_ 191 IYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKF 231 (280)
T ss_dssp HHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHHC
T ss_pred HHHHHHhhccccchhhhcccchhhHhCCCccHHHHHHHHhC
Confidence 3458899988876 456788899998876543
No 8
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Probab=6.94 E-value=84 Score=30.13 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhhhhhhhccc
Q 023367 135 AALMMNIYIVGLNQLSDIEIDK 156 (283)
Q Consensus 135 a~l~~n~~~ngINDyfD~EIDk 156 (283)
-..+.|.|.|++|-|+|-+--.
T Consensus 554 EavLaNtYaNAvNvYCDsvYra 575 (967)
T d1uf2a_ 554 EAILANTYANAVNVYCDSVYRA 575 (967)
T ss_dssp HHHHTTHHHHHSBSSCCCCCCT
T ss_pred HHHHHHhhhhhhhhhccccccC
Confidence 4455899999999999988655
No 9
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.17 E-value=63 Score=26.61 Aligned_cols=28 Identities=21% Similarity=0.193 Sum_probs=21.1
Q ss_pred HHHHHhcCCChh-----------hhhhcCCcccchhcch
Q 023367 217 VIALFKDVPDLE-----------GDKTFGIRTFTVRLGQ 244 (283)
Q Consensus 217 ~rei~KDI~DIE-----------GDr~~GirTLai~lG~ 244 (283)
+=.|..|+.|+. .|.+.|..|+|+.+.-
T Consensus 178 afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~al 216 (291)
T d2q80a1 178 FFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 216 (291)
T ss_dssp HHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHhhhhccchhhccccccchhccCCCcHHHHHHH
Confidence 345778887775 4778899999998864
No 10
>d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.63 E-value=1e+02 Score=24.95 Aligned_cols=14 Identities=50% Similarity=0.446 Sum_probs=11.3
Q ss_pred Hhhhhhh---hhhhccc
Q 023367 143 IVGLNQL---SDIEIDK 156 (283)
Q Consensus 143 ~ngINDy---fD~EIDk 156 (283)
.+.++|+ ||+|||+
T Consensus 178 ~~Vl~QL~YRYerEI~~ 194 (196)
T d1iyjb1 178 ERVLLQLKYRYDVEIDN 194 (196)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 4567887 9999996
Done!