BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023368
MIESLTCCRSGRVTGTPVGIPRHEFTASSYSSSNSKLNKFDRRGLFALTTTGTRATSHLF
SSIRKRSASRIVMAAEAIASSDVVSGDMIFEPVLEEGVFRFDCSASDRQAAYPSLSFVNG
KDRDTPISTRTRPSYTPTFQCVRGQQIVKLEFPAGTSLYGTGEVSGQLERTGKRIFTWNT
DSWGYGTETTSLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKESTIQFTAPSSYPVI
TFGPFTSPTAVLVSLSHAVGNLLDQAFSSSSAPRPCQVFMMSR

High Scoring Gene Products

Symbol, full name Information P value
HGL1
AT3G23640
protein from Arabidopsis thaliana 3.5e-69
yicI
alpha-xylosidase
protein from Escherichia coli K-12 0.00013

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023368
        (283 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2088035 - symbol:HGL1 "heteroglycan glucosidas...   702  3.5e-69   1
UNIPROTKB|P31434 - symbol:yicI "alpha-xylosidase" species...   123  0.00013   1


>TAIR|locus:2088035 [details] [associations]
            symbol:HGL1 "heteroglycan glucosidase 1" species:3702
            "Arabidopsis thaliana" [GO:0004553 "hydrolase activity, hydrolyzing
            O-glycosyl compounds" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0005975 "carbohydrate metabolic process"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
            InterPro:IPR000322 InterPro:IPR011013 InterPro:IPR013785
            Pfam:PF01055 PROSITE:PS00129 GO:GO:0009507 EMBL:CP002686
            GenomeReviews:BA000014_GR Gene3D:3.20.20.70 InterPro:IPR017853
            SUPFAM:SSF51445 GO:GO:0005975 GO:GO:0004553 GO:GO:0030246 CAZy:GH31
            eggNOG:COG1501 InterPro:IPR025887 PANTHER:PTHR22762 Pfam:PF13802
            SUPFAM:SSF74650 EMBL:AY059821 EMBL:BT002505 EMBL:BT008811
            IPI:IPI00521540 RefSeq:NP_001118685.1 RefSeq:NP_566736.1
            UniGene:At.8054 ProteinModelPortal:Q93Y12 SMR:Q93Y12 PaxDb:Q93Y12
            PRIDE:Q93Y12 EnsemblPlants:AT3G23640.1 EnsemblPlants:AT3G23640.2
            GeneID:821944 KEGG:ath:AT3G23640 TAIR:At3g23640
            HOGENOM:HOG000029407 InParanoid:Q93Y12 OMA:MYQAIPF PhylomeDB:Q93Y12
            ProtClustDB:PLN02763 Genevestigator:Q93Y12 Uniprot:Q93Y12
        Length = 991

 Score = 702 (252.2 bits), Expect = 3.5e-69, P = 3.5e-69
 Identities = 126/192 (65%), Positives = 155/192 (80%)

Query:    71 IVMAAEAIASSDVVSGDMIFEPVLEEGVFRFDCSASDRQAAYPSLSFVNGKDRDTPISTR 130
             + ++ ++  + ++ S DMIFEP+LE GVFRFDCS   R+AA+PS+SF N KDR+ PI + 
Sbjct:     1 MTLSGDSSETVEMTSTDMIFEPILEHGVFRFDCSVDHRKAAFPSVSFKNSKDREVPIVSH 60

Query:   131 TRPSYTPTFQCVRGQQIVKLEFPAGTSLYGTGEVSGQLERTGKRIFTWNTDSWGYGTETT 190
               P+Y PT  C++ QQ+V  EF  GTS YGTGEVSGQLERTGKR+FTWNTD+WGYG+ TT
Sbjct:    61 IVPAYIPTCGCLQDQQVVTFEFSPGTSFYGTGEVSGQLERTGKRVFTWNTDAWGYGSGTT 120

Query:   191 SLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKESTIQFTAPSSYPVITFGPFTSPTA 250
             SLYQSHPWVL VLP GE LGVLADTTR+CEIDLRKE  I+  +P+SYP+ITFGPF+SPTA
Sbjct:   121 SLYQSHPWVLVVLPTGETLGVLADTTRKCEIDLRKEGIIRIISPASYPIITFGPFSSPTA 180

Query:   251 VLVSLSHAVGNL 262
             VL SLSHA+G +
Sbjct:   181 VLESLSHAIGTV 192


>UNIPROTKB|P31434 [details] [associations]
            symbol:yicI "alpha-xylosidase" species:83333 "Escherichia
            coli K-12" [GO:0030246 "carbohydrate binding" evidence=IEA]
            [GO:0005975 "carbohydrate metabolic process" evidence=IEA]
            [GO:0080176 "xyloglucan 1,6-alpha-xylosidase activity"
            evidence=IDA] [GO:0008152 "metabolic process" evidence=IEA]
            InterPro:IPR000322 InterPro:IPR011013 InterPro:IPR013785
            Pfam:PF01055 PROSITE:PS00129 PROSITE:PS00707 Gene3D:3.20.20.70
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR InterPro:IPR017853 SUPFAM:SSF51445
            GO:GO:0005975 GO:GO:0030246 EMBL:L10328 CAZy:GH31 eggNOG:COG1501
            InterPro:IPR025887 PANTHER:PTHR22762 Pfam:PF13802 SUPFAM:SSF74650
            GO:GO:0080176 PIR:B65167 RefSeq:NP_418113.1 RefSeq:YP_491778.1
            PDB:1WE5 PDB:1XSI PDB:1XSJ PDB:1XSK PDB:2F2H PDBsum:1WE5
            PDBsum:1XSI PDBsum:1XSJ PDBsum:1XSK PDBsum:2F2H
            ProteinModelPortal:P31434 SMR:P31434 DIP:DIP-12433N IntAct:P31434
            PRIDE:P31434 EnsemblBacteria:EBESCT00000003933
            EnsemblBacteria:EBESCT00000018187 GeneID:12933578 GeneID:948169
            KEGG:ecj:Y75_p3518 KEGG:eco:b3656 PATRIC:32122799 EchoBASE:EB1636
            EcoGene:EG11685 HOGENOM:HOG000221907 KO:K01811 OMA:SFTTDYD
            ProtClustDB:PRK10658 BioCyc:EcoCyc:EG11685-MONOMER
            BioCyc:ECOL316407:JW3631-MONOMER BioCyc:MetaCyc:EG11685-MONOMER
            SABIO-RK:P31434 EvolutionaryTrace:P31434 Genevestigator:P31434
            Uniprot:P31434
        Length = 772

 Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 48/171 (28%), Positives = 72/171 (42%)

Query:   104 SASDRQAAYPSLSFVNGKDRDTPISTRTRPSYTPTFQCVRGQQIVKLEFPAGTSLYGTGE 163
             SA   +  + SL F+   +R T    +    Y       R     +L+   G ++YG GE
Sbjct:   109 SARVSKGEFWSLDFLRNGERITGSQVKNN-GYVQDTNNQRNYMFERLDLGVGETVYGLGE 167

Query:   164 VSGQLERTGKRIFTWNTDSWGYGTETTSLYQSHPWVLAVLPNGEALGVLADTTRRC---E 220
                 L R G+ + TWN D    GT T   Y++ P+ +         GVL +  + C   E
Sbjct:   168 RFTALVRNGQTVETWNRDG---GTSTEQAYKNIPFYMT----NRGYGVLVNHPQ-CVSFE 219

Query:   221 IDLRKESTIQFTAPSSYP--VITFGPFTSPTAVLVSLSHAVGN-LLDQAFS 268
             +   K S +QF+  S Y    +  GP  +P AVL   +   G   L  A+S
Sbjct:   220 VGSEKVSKVQFSVESEYLEYFVIDGP--TPKAVLDRYTRFTGRPALPPAWS 268


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       275   0.00079  115 3  11 22  0.48    33
                                                     33  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  189 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.50u 0.13s 22.63t   Elapsed:  00:00:03
  Total cpu time:  22.50u 0.13s 22.63t   Elapsed:  00:00:03
  Start:  Thu May  9 23:03:45 2013   End:  Thu May  9 23:03:48 2013

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