BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023368
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 102 DCSASDRQAAYPSLSFVNGKDRDTPISTRTRPSYTPTFQCVRGQQIVKLEFPAGTSLYGT 161
+ SA + + SL F+ +R T + Y R +L+ G ++YG
Sbjct: 107 NLSARVSKGEFWSLDFLRNGERITGSQVKNN-GYVQDTNNQRNYMFERLDLGVGETVYGL 165
Query: 162 GEVSGQLERTGKRIFTWNTDSWGYGTETTSLYQSHPWVLAVLPNGEALGVLADTTR--RC 219
GE L R G+ + TWN D GT T Y++ P+ + GVL + +
Sbjct: 166 GERFTALVRNGQTVETWNRDG---GTSTEQAYKNIPFYMT----NRGYGVLVNHPQCVSF 218
Query: 220 EIDLRKESTIQFTAPSSY--PVITFGPFTSPTAVL 252
E+ K S +QF+ S Y + GP +P AVL
Sbjct: 219 EVGSEKVSKVQFSVESEYLEYFVIDGP--TPKAVL 251
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 102 DCSASDRQAAYPSLSFVNGKDRDTPISTRTRPSYTPTFQCVRGQQIVKLEFPAGTSLYGT 161
+ SA + + SL F+ +R T + Y R +L+ G ++YG
Sbjct: 107 NLSARVSKGEFWSLDFLRNGERITGSQVKNN-GYVQDTNNQRNYMFERLDLGVGETVYGL 165
Query: 162 GEVSGQLERTGKRIFTWNTDSWGYGTETTSLYQSHPWVLAVLPNGEALGVLADTTR--RC 219
GE L R G+ + TWN D GT T Y++ P+ + GVL + +
Sbjct: 166 GERFTALVRNGQTVETWNRDG---GTSTEQAYKNIPFYMT----NRGYGVLVNHPQCVSF 218
Query: 220 EIDLRKESTIQFTAPSSY--PVITFGPFTSPTAVL 252
E+ K S +QF+ S Y + GP +P AVL
Sbjct: 219 EVGSEKVSKVQFSVESEYLEYFVIDGP--TPKAVL 251
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 14/155 (9%)
Query: 102 DCSASDRQAAYPSLSFVNGKDRDTPISTRTRPSYTPTFQCVRGQQIVKLEFPAGTSLYGT 161
+ SA + + SL F+ +R T + Y R +L+ G ++YG
Sbjct: 107 NLSARVSKGEFWSLDFLRNGERITGSQVKNN-GYVQDTNNQRNYXFERLDLGVGETVYGL 165
Query: 162 GEVSGQLERTGKRIFTWNTDSWGYGTETTSLYQSHPWVLAVLPNGEALGVLADTTR--RC 219
GE L R G+ + TWN D GT T Y++ P GVL + +
Sbjct: 166 GERFTALVRNGQTVETWNRDG---GTSTEQAYKNIP----FYXTNRGYGVLVNHPQCVSF 218
Query: 220 EIDLRKESTIQFTAPSSY--PVITFGPFTSPTAVL 252
E+ K S +QF+ S Y + GP +P AVL
Sbjct: 219 EVGSEKVSKVQFSVESEYLEYFVIDGP--TPKAVL 251
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 147 IVKLEFPAGTSLYGTGEVSGQLERTGKRIFTWNTDSWGYGTETTSLYQSHPWVLAVLPNG 206
IV+ + G GE + +L+R KR +N D+ Y LY S P ++V +G
Sbjct: 53 IVEKSLDLKEHIIGLGEKAFELDRKRKRYVMYNVDAGAYKKYQDPLYVSIPLFISV-KDG 111
Query: 207 EALGVLADTTRRCEIDL 223
A G ++ + D+
Sbjct: 112 VATGYFFNSASKVIFDV 128
>pdb|2J1K|C Chain C, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|D Chain D, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|E Chain E, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|F Chain F, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|H Chain H, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|I Chain I, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|L Chain L, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|M Chain M, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|N Chain N, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Q Chain Q, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|R Chain R, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|S Chain S, Cav-2 Fibre Head In Complex With Car D1
pdb|2J2J|A Chain A, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|B Chain B, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|C Chain C, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|D Chain D, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|E Chain E, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|F Chain F, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2W9L|C Chain C, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|D Chain D, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|E Chain E, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|F Chain F, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|H Chain H, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|I Chain I, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|L Chain L, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|M Chain M, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|N Chain N, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Q Chain Q, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|R Chain R, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|S Chain S, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
Length = 197
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 166 GQLERTGK--RIFTWNTDSWGYGTETTSLYQSHPWVLAVLPNGEALGVLADTTRRCEID 222
GQL TG TW WG T SH W L +PN E A T RC +D
Sbjct: 83 GQLMSTGNINSTTTWGEKPWG--NNTVQPRPSHTWKLC-MPNREVYSTPAATISRCGLD 138
>pdb|2WBV|A Chain A, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|B Chain B, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|C Chain C, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|D Chain D, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|E Chain E, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|F Chain F, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
Length = 189
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 166 GQLERTGK--RIFTWNTDSWGYGTETTSLYQSHPWVLAVLPNGEALGVLADTTRRCEID 222
GQL TG TW WG T SH W L +PN E A T RC +D
Sbjct: 75 GQLMSTGNINSTTTWGEKPWG--NNTVQPRPSHTWKLC-MPNREVYSTPAATISRCGLD 130
>pdb|2X8K|A Chain A, Crystal Structure Of Spp1 Dit (Gp 19.1) Protein, A
Paradigm Of Hub Adsorption Apparatus In Gram-Positive
Infecting Phages.
pdb|2X8K|B Chain B, Crystal Structure Of Spp1 Dit (Gp 19.1) Protein, A
Paradigm Of Hub Adsorption Apparatus In Gram-Positive
Infecting Phages.
pdb|2X8K|C Chain C, Crystal Structure Of Spp1 Dit (Gp 19.1) Protein, A
Paradigm Of Hub Adsorption Apparatus In Gram-Positive
Infecting Phages
Length = 252
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 45 LFALTTTGTRATSH-LFSSIRKRSASRIVMAAEAIASSD--VVSGDMIFEPVLEEGVFRF 101
+F + G T + L +R RS I M IA D V++ + + LE F
Sbjct: 9 VFTMMYDGQDLTDYFLVQEVRGRSVYSIEMGKRTIAGVDGGVITTESLPARELEVDAIVF 68
Query: 102 -DCSASDRQAAYPSLSFVNGKDRDTPISTRTRPSYT 136
D + +D + L+F+ +D D PI+ PS T
Sbjct: 69 GDGTETDLRRRIEYLNFLLHRDTDVPITFSDEPSRT 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,753,836
Number of Sequences: 62578
Number of extensions: 310113
Number of successful extensions: 916
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 10
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)