Query 023370
Match_columns 283
No_of_seqs 176 out of 1372
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 1.1E-52 2.4E-57 363.2 21.2 231 33-276 4-235 (238)
2 PLN00184 aquaporin NIP1; Provi 100.0 1.9E-50 4.2E-55 361.4 24.2 241 18-269 32-275 (296)
3 KOG0224 Aquaporin (major intri 100.0 1.4E-49 3E-54 346.1 13.4 229 35-269 27-277 (316)
4 COG0580 GlpF Glycerol uptake f 100.0 9.4E-48 2E-52 331.5 22.0 225 38-267 3-240 (241)
5 PTZ00016 aquaglyceroporin; Pro 100.0 2.9E-47 6.3E-52 341.8 25.5 226 37-269 47-292 (294)
6 PF00230 MIP: Major intrinsic 100.0 1.5E-47 3.3E-52 334.2 22.1 224 33-262 1-227 (227)
7 PLN00182 putative aquaporin NI 100.0 1.6E-46 3.5E-51 334.2 26.3 217 36-267 38-254 (283)
8 PRK05420 aquaporin Z; Provisio 100.0 3.8E-46 8.2E-51 324.8 24.6 221 40-269 2-230 (231)
9 PLN00167 aquaporin TIP5; Provi 100.0 6.6E-46 1.4E-50 327.0 25.6 237 32-279 14-252 (256)
10 PLN00166 aquaporin TIP2; Provi 100.0 9.4E-46 2E-50 325.2 24.9 227 33-269 11-239 (250)
11 PLN00026 aquaporin NIP; Provi 100.0 5.8E-46 1.3E-50 331.9 23.1 219 36-270 67-285 (298)
12 PLN00027 aquaporin TIP; Provis 100.0 1.6E-45 3.6E-50 324.7 25.2 227 32-269 12-241 (252)
13 PLN00183 putative aquaporin NI 100.0 1.1E-45 2.3E-50 327.8 23.3 253 2-271 7-260 (274)
14 cd00333 MIP Major intrinsic pr 100.0 5.7E-43 1.2E-47 305.3 23.0 220 41-265 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 3.5E-41 7.7E-46 291.8 20.8 214 45-262 1-216 (216)
16 PLN00026 aquaporin NIP; Provi 99.7 3.2E-16 7E-21 140.6 8.8 109 158-268 65-173 (298)
17 PLN00184 aquaporin NIP1; Provi 99.6 4E-16 8.6E-21 140.2 8.7 107 161-269 51-157 (296)
18 PLN00183 putative aquaporin NI 99.6 5.8E-15 1.3E-19 131.4 8.5 107 160-268 41-147 (274)
19 PLN00182 putative aquaporin NI 99.6 1.6E-14 3.4E-19 129.2 9.9 98 38-144 157-254 (283)
20 PLN00166 aquaporin TIP2; Provi 99.5 1.7E-14 3.8E-19 127.1 8.1 106 161-268 15-125 (250)
21 cd00333 MIP Major intrinsic pr 99.5 4E-14 8.7E-19 123.6 9.5 99 36-140 126-226 (228)
22 PLN00167 aquaporin TIP5; Provi 99.5 3.4E-14 7.4E-19 125.6 9.0 105 161-267 19-128 (256)
23 PTZ00016 aquaglyceroporin; Pro 99.5 5.7E-14 1.2E-18 126.6 8.7 106 162-269 48-153 (294)
24 PRK05420 aquaporin Z; Provisio 99.5 9E-14 1.9E-18 121.4 8.7 103 164-268 2-105 (231)
25 PLN00027 aquaporin TIP; Provis 99.5 1.6E-13 3.5E-18 121.3 8.8 104 162-267 18-126 (252)
26 TIGR00861 MIP MIP family chann 99.4 2.5E-13 5.5E-18 117.6 8.2 96 37-138 119-215 (216)
27 KOG0224 Aquaporin (major intri 99.4 9.3E-13 2E-17 115.9 6.7 114 163-278 31-145 (316)
28 COG0580 GlpF Glycerol uptake f 99.3 2.6E-12 5.7E-17 111.5 8.1 109 164-274 5-116 (241)
29 KOG0223 Aquaporin (major intri 99.3 1.4E-11 3.1E-16 107.1 7.5 108 160-269 7-114 (238)
30 PF00230 MIP: Major intrinsic 99.2 1.4E-11 3.1E-16 107.4 3.8 106 162-269 6-117 (227)
31 PRK10805 formate transporter; 95.5 1.4 2.9E-05 39.9 16.5 105 77-185 69-183 (285)
32 COG2116 FocA Formate/nitrite f 95.0 2.5 5.5E-05 37.6 17.8 187 74-272 62-263 (265)
33 PRK11562 nitrite transporter N 94.9 2.6 5.7E-05 37.7 17.7 192 77-281 59-264 (268)
34 TIGR00790 fnt formate/nitrite 81.5 36 0.00078 29.8 14.0 105 77-183 44-157 (239)
35 PF01226 Form_Nir_trans: Forma 78.7 46 0.001 29.4 13.6 112 75-188 56-175 (250)
36 PRK09713 focB putative formate 78.1 53 0.0011 29.7 17.3 106 77-185 68-182 (282)
37 PF04632 FUSC: Fusaric acid re 69.1 1.3E+02 0.0028 30.1 14.7 41 105-145 373-413 (650)
38 PF08370 PDR_assoc: Plant PDR 67.0 14 0.0003 25.6 4.4 38 226-266 9-47 (65)
39 COG0730 Predicted permeases [G 43.6 2.2E+02 0.0048 24.7 11.0 32 111-142 66-97 (258)
40 PF03033 Glyco_transf_28: Glyc 39.0 11 0.00025 29.1 0.3 22 95-116 5-26 (139)
41 PRK11404 putative PTS system 36.6 4.1E+02 0.009 25.9 11.2 27 244-270 441-467 (482)
42 PHA02450 hypothetical protein 34.8 17 0.00037 23.2 0.6 16 1-16 1-16 (53)
43 PRK12446 undecaprenyldiphospho 33.6 11 0.00023 35.0 -0.7 22 93-114 6-27 (352)
44 PF14990 DUF4516: Domain of un 28.0 98 0.0021 20.0 3.2 35 114-148 3-37 (47)
45 PRK10621 hypothetical protein; 25.9 4.5E+02 0.0098 23.0 9.9 29 114-142 73-101 (266)
46 TIGR02762 TraL_TIGR type IV co 25.4 19 0.00042 26.8 -0.5 21 232-252 58-78 (95)
47 PF03169 OPT: OPT oligopeptide 24.3 6.7E+02 0.015 25.1 10.1 21 162-182 466-486 (624)
48 PRK11427 multidrug efflux syst 23.5 8.2E+02 0.018 25.1 15.9 28 117-144 394-421 (683)
49 PRK09765 PTS system 2-O-a-mann 23.3 3.5E+02 0.0077 27.3 7.9 169 88-272 349-526 (631)
50 PF09512 ThiW: Thiamine-precur 21.5 4.3E+02 0.0092 21.5 6.5 25 118-142 123-147 (150)
51 KOG4647 Uncharacterized membra 20.4 1.5E+02 0.0033 25.8 3.9 30 27-56 82-111 (263)
52 PRK10712 PTS system fructose-s 20.3 8.7E+02 0.019 24.3 12.4 65 199-268 490-554 (563)
53 PRK10631 p-hydroxybenzoic acid 20.3 9.3E+02 0.02 24.6 14.4 47 99-145 380-426 (652)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=363.15 Aligned_cols=231 Identities=53% Similarity=0.848 Sum_probs=207.7
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHH
Q 023370 33 ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 112 (283)
Q Consensus 33 ~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l 112 (283)
+...++.+|++++||++|++++|++|+++...... +...+.+.+++++|+.+++.+++++++||||+|||||+++++
T Consensus 4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~ 80 (238)
T KOG0223|consen 4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAV 80 (238)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---CCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHH
Confidence 45678899999999999999999999988765531 245578889999999999999999999999999999999999
Q ss_pred hhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHH-hccCCCCC
Q 023370 113 ARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSA 191 (283)
Q Consensus 113 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~-~~~~~~~~ 191 (283)
.|++++.++..|+++|++|+++|+.+++.+.+.+++....+.+.+.++.+..++++.|++.||+|++++++ .+|+|+.
T Consensus 81 ~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~- 159 (238)
T KOG0223|consen 81 GGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS- 159 (238)
T ss_pred hCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc-
Confidence 99999999999999999999999999999999864445556677888999999999999999999999998 7777664
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcchhhh
Q 023370 192 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAI 271 (283)
Q Consensus 192 ~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~~ 271 (283)
.+.|+.||+++.+.++..+++||++|||||+|||+++++ .|++||+||+||++|+++++++|++++.++++
T Consensus 160 ------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~ 230 (238)
T KOG0223|consen 160 ------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPDES 230 (238)
T ss_pred ------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCccc
Confidence 478999999999999999999999999999999999976 49999999999999999999999999998855
Q ss_pred hhccC
Q 023370 272 KALGS 276 (283)
Q Consensus 272 ~~~~~ 276 (283)
|..++
T Consensus 231 ~~~~~ 235 (238)
T KOG0223|consen 231 EPTKS 235 (238)
T ss_pred cccCc
Confidence 54444
No 2
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=1.9e-50 Score=361.42 Aligned_cols=241 Identities=28% Similarity=0.425 Sum_probs=194.2
Q ss_pred CCCCCCCCCCccChhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCc
Q 023370 18 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97 (283)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~i 97 (283)
++.++|...+..+.......+++|++++||+|||+|+|++++++...... ....+++.+++++|+++++.+++++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~---~~~~~~~~iai~~Gl~v~~~i~~~g~i 108 (296)
T PLN00184 32 EAIHNPKPLKKQDSLLSVSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQN---DNVVTLPGIAIVWGLTIMVLIYSLGHI 108 (296)
T ss_pred cccCCCcccccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCccccHHHHHHHHHHHHHHHHHhcCC
Confidence 33334444333333333466789999999999999999999876543221 112356778999999999999999999
Q ss_pred cccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCC---CcccCCCCcchhhHHHHHHHH
Q 023370 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG---ANTVASGYNKGSALGAEIIGT 174 (283)
Q Consensus 98 SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~E~~~T 174 (283)
||||+|||||+++++.|+++|.+.+.|+++|++|+++|+++++.+++......... .....+..+..++|+.|+++|
T Consensus 109 SGaH~NPAVTla~al~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~T 188 (296)
T PLN00184 109 SGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVT 188 (296)
T ss_pred CccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986433211111 111233457889999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHH
Q 023370 175 FVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 254 (283)
Q Consensus 175 ~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~G 254 (283)
++|+++++++.++++.. ..+.|+.||+++.+.++..+++||++|||||||||+++.+ .|+++||||+||++|
T Consensus 189 fvLv~~il~~~~~~~~~-----~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~---~~~~~WVy~vgPilG 260 (296)
T PLN00184 189 FYLMFIISGVATDNRAI-----GELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG---CYKGIWIYIVAPTLG 260 (296)
T ss_pred HHHHHHHHheeccCcCC-----CcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh---cccccchHHhHHHHH
Confidence 99999999876544321 2367999999999999999999999999999999999865 689999999999999
Q ss_pred HHHHHHHHHHHcchh
Q 023370 255 ALAAAAYHQYILRAA 269 (283)
Q Consensus 255 a~~a~~~y~~~~~~~ 269 (283)
+++|+++|++++.++
T Consensus 261 a~laal~y~~l~~~~ 275 (296)
T PLN00184 261 AIAGAWVYNTVRYTD 275 (296)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998643
No 3
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=346.07 Aligned_cols=229 Identities=26% Similarity=0.428 Sum_probs=198.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhh
Q 023370 35 KLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR 114 (283)
Q Consensus 35 ~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g 114 (283)
.+.++.|++++||+||++|++++++++.....+.. ...++..+.+++|+.+++.+++.+++||||+|||||+++++.|
T Consensus 27 i~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g--~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g 104 (316)
T KOG0224|consen 27 IRNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGG--TGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILG 104 (316)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhccceeEEEEeccC--CCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhc
Confidence 35679999999999999999999998876655432 2345667788899999999999999999999999999999999
Q ss_pred cCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCC--------------cccCCCCcchhhHHHHHHHHHHHHHH
Q 023370 115 KVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGA--------------NTVASGYNKGSALGAEIIGTFVLVYT 180 (283)
Q Consensus 115 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~E~~~T~~Lv~~ 180 (283)
|++|+|+++|+++|++||++|++.+|.+|.+.++.+.++. +.+.|..+.+++|+.|+++|.+|+.+
T Consensus 105 ~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~ 184 (316)
T KOG0224|consen 105 RLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLC 184 (316)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999887766542 23456789999999999999999999
Q ss_pred HHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHh-----cCCCCC---CcceehhhhhH
Q 023370 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY-----NNDKAW---DDHWIFWVGPF 252 (283)
Q Consensus 181 vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~-----~~~~~~---~~~~vy~v~p~ 252 (283)
+++++|++|... +.+.|+.+|+.+.++..+.+.++|..+||||||+||++. +.+..+ .+.|++|++|+
T Consensus 185 l~aI~D~rN~~p----~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl 260 (316)
T KOG0224|consen 185 LFAITDKRNPIP----TGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPL 260 (316)
T ss_pred eeEEecCCCCCC----cchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhh
Confidence 999999988432 458899999999999999999999999999999999982 222222 45788999999
Q ss_pred HHHHHHHHHHHHHcchh
Q 023370 253 VGALAAAAYHQYILRAA 269 (283)
Q Consensus 253 ~Ga~~a~~~y~~~~~~~ 269 (283)
+|+++++++|++++.-+
T Consensus 261 ~Gai~G~~iY~~~Ig~h 277 (316)
T KOG0224|consen 261 IGAILGGWIYDFFIGFH 277 (316)
T ss_pred hhhhhhhhhheeeeecc
Confidence 99999999999998544
No 4
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.4e-48 Score=331.49 Aligned_cols=225 Identities=35% Similarity=0.549 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCc
Q 023370 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (283)
Q Consensus 38 ~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (283)
+..|++++||+|||+|++++++++........+....+++.+++++|+.+++.+|+++++||||+|||||+++++.|+++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 45678899999999999999999887776655556677888999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcC------CCCcccCCC-CcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 023370 118 LIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLG------GGANTVASG-YNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (283)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~ 190 (283)
|++++.||++|++||++|+.+++.++++.+...+ .+...+.|+ .+..++|+.|+++|++|++++++..++++.
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~ 162 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA 162 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999998765544 122223333 577889999999999999999998875443
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHh---cC---CCCCCcceehhhhhHHHHHHHHHHHHH
Q 023370 191 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY---NN---DKAWDDHWIFWVGPFVGALAAAAYHQY 264 (283)
Q Consensus 191 ~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~---~~---~~~~~~~~vy~v~p~~Ga~~a~~~y~~ 264 (283)
+ ..+.|+.+|+.+..+.++.++.||.++|||||+|||+.+ +. ..++.|.|+||++|++|+++|+++|+.
T Consensus 163 --~---~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~ 237 (241)
T COG0580 163 --N---AGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKL 237 (241)
T ss_pred --c---ccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHH
Confidence 1 247899999999999999999999999999999999953 21 112268999999999999999999998
Q ss_pred Hcc
Q 023370 265 ILR 267 (283)
Q Consensus 265 ~~~ 267 (283)
++.
T Consensus 238 ~~~ 240 (241)
T COG0580 238 LLG 240 (241)
T ss_pred Hcc
Confidence 774
No 5
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=2.9e-47 Score=341.85 Aligned_cols=226 Identities=27% Similarity=0.391 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcC
Q 023370 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 116 (283)
Q Consensus 37 ~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~ 116 (283)
++++|++++||+|||+++|++++++....... ...+.+.+++++|+.+++.+++++++||+|+|||||+++++.|++
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~---~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i 123 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVG---NNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKF 123 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---CCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccC
Confidence 56889999999999999999998765432211 123566788999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCC-------------CcccCCCCcchhhHHHHHHHHHHHHHHHHH
Q 023370 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG-------------ANTVASGYNKGSALGAEIIGTFVLVYTVFS 183 (283)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~ 183 (283)
+|.+.+.|+++|++|+++|++++|.++++.++..+.. ...+.++.+..++++.|+++|++|++++++
T Consensus 124 ~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila 203 (294)
T PTZ00016 124 PWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILA 203 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998754332211 112234567789999999999999999999
Q ss_pred hccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhc---CCCCCC----cceehhhhhHHHHH
Q 023370 184 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN---NDKAWD----DHWIFWVGPFVGAL 256 (283)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~---~~~~~~----~~~vy~v~p~~Ga~ 256 (283)
+.|+++... ....|+.+|+.+.++.+..+++||++|||||||||+++.. +...|+ ++|+||+||++|++
T Consensus 204 ~~d~~~~~~----~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~ 279 (294)
T PTZ00016 204 ITDPNNCPA----FNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAV 279 (294)
T ss_pred hccCccCCC----cCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHH
Confidence 988776432 2357999999999999999999999999999999999862 222444 68999999999999
Q ss_pred HHHHHHHHHcchh
Q 023370 257 AAAAYHQYILRAA 269 (283)
Q Consensus 257 ~a~~~y~~~~~~~ 269 (283)
+|+++|++++.|+
T Consensus 280 ~aally~~ll~~~ 292 (294)
T PTZ00016 280 LGMFLYDKFIPPL 292 (294)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999775
No 6
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=1.5e-47 Score=334.15 Aligned_cols=224 Identities=39% Similarity=0.622 Sum_probs=193.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC---CCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHH
Q 023370 33 ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA---CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 109 (283)
Q Consensus 33 ~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla 109 (283)
|.++++++|++++||+||++++|+++++.........+ ....+...+++++|+.+++.+++++++||||+||+||++
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla 80 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLA 80 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhh
Confidence 45678899999999999999999999866533322211 122456788999999999999999999999999999999
Q ss_pred HHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCC
Q 023370 110 LFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (283)
Q Consensus 110 ~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~ 189 (283)
.++.|+++|.+.+.|+++|++|+++|+++++.++++.........+.+.++.+..++++.|+++|++|+++++...|+++
T Consensus 81 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~ 160 (227)
T PF00230_consen 81 FALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKR 160 (227)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred eeeeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhccccc
Confidence 99999999999999999999999999999999998864444445566778889999999999999999999999998887
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHH
Q 023370 190 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYH 262 (283)
Q Consensus 190 ~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y 262 (283)
+... ..+.|+.+|+.+.+..+..++.||+++||||+|+|+++.+ .|+++|+||++|++|+++|+++|
T Consensus 161 ~~~~---~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~---~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 161 KFPL---GPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSG---IWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp SSTS---SGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHT---HHTTTTHHHHHHHHHHHHHHHHH
T ss_pred cccc---ccccceeEEEEEeecccccccccccccCchhhcCceeecc---cCCeEEEEEehHHHHHHHHHhhC
Confidence 6542 2368999999999999999999999999999999999976 39999999999999999999987
No 7
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=1.6e-46 Score=334.17 Aligned_cols=217 Identities=27% Similarity=0.482 Sum_probs=184.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhc
Q 023370 36 LWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 115 (283)
Q Consensus 36 ~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~ 115 (283)
.++++|++++||+|||+|+|++++++....... ...+.+.+++++|+.+++.+++++++||||+|||||+++++.|+
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~---~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~ 114 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYG---GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRR 114 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---CCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcC
Confidence 457889999999999999999998766432211 12356778889999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 023370 116 VSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSH 195 (283)
Q Consensus 116 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~ 195 (283)
++|.+++.|+++|++|+++|+++++.+++... .+.....++.+..++++.|+++|++|+++++...++++..
T Consensus 115 ~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~----~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~---- 186 (283)
T PLN00182 115 FPWYQVPLYIGAQLTGSLLASLTLRLMFNVTP----EAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRAV---- 186 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheeccccC----
Confidence 99999999999999999999999999885321 1112233456788999999999999999998765543321
Q ss_pred CCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcc
Q 023370 196 VPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILR 267 (283)
Q Consensus 196 ~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~ 267 (283)
....++.+|+++.+..+..+++||+++||||+|+|+++.+ .|+++|+||++|++|+++|+++|++++.
T Consensus 187 -~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~---~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 187 -GELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG---RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred -CcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc---cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 2357999999999999999999999999999999999854 5999999999999999999999999984
No 8
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=3.8e-46 Score=324.77 Aligned_cols=221 Identities=32% Similarity=0.592 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchh
Q 023370 40 YRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLI 119 (283)
Q Consensus 40 ~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~ 119 (283)
+|++++||+||++++|++++++....... ..+.+.+.+++++|+.+++.+++++++||+|+|||||+++++.|+++|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~--~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFP--ELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccC--CCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHH
Confidence 58999999999999999998764322111 1233567789999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhhhhhh--hhcC-----CCCc-ccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 023370 120 RAVAYMVAQCLGAICGVGLVKAFMKHEY--NSLG-----GGAN-TVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSA 191 (283)
Q Consensus 120 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~--~~~~-----~~~~-~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~ 191 (283)
+.+.|+++|++|+++|+++++.++++.. +... .+.. ..+...+..++++.|+++|++|+++++...|+++.
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~- 158 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATDKRAP- 158 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCC-
Confidence 9999999999999999999998876421 1110 0000 11234577899999999999999999998886542
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcchh
Q 023370 192 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 192 ~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~ 269 (283)
....|+.+|+.+....+..+++||++|||||||||+++.+ +..|+++|+||++|++|+++++++|+++++.+
T Consensus 159 -----~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g-~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 159 -----AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG-GWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred -----CcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhC-CCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 2367999999999999999999999999999999999975 33457899999999999999999999998654
No 9
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=6.6e-46 Score=326.98 Aligned_cols=237 Identities=30% Similarity=0.444 Sum_probs=196.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--cCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHH
Q 023370 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKK--QSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 109 (283)
Q Consensus 32 ~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla 109 (283)
++...++++|++++||+|||+++|+++++...... ........+++.+++++|+.+++.+++++++||+|+|||||++
T Consensus 14 ~~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~ 93 (256)
T PLN00167 14 QQSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFG 93 (256)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHH
Confidence 34456778999999999999999999988764321 1111123457789999999999999999999999999999999
Q ss_pred HHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCC
Q 023370 110 LFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (283)
Q Consensus 110 ~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~ 189 (283)
.++.|+++|.+.+.|+++|++|+++|+++.+.++++... ..+...++.+..++++.|+++|++|+++++...|+++
T Consensus 94 ~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~~~~ 169 (256)
T PLN00167 94 MAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHV----PTYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPRR 169 (256)
T ss_pred HHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccc----cccccCcccchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999888654211 1122234456778999999999999999998887765
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcchh
Q 023370 190 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 190 ~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~ 269 (283)
... +...|+.+|+.+.++.+..+++||++|||||+|||+++.+ .|+++|+||+||++|+++++++|++++.|+
T Consensus 170 ~~~----~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~---~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~ 242 (256)
T PLN00167 170 GLL----GAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG---SFKNQAVYWVGPLLGGAVAGLLYDNVVFPT 242 (256)
T ss_pred cCC----CCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc---CccCcEEEeHHHHHHHHHHHHHHHHHhCCC
Confidence 321 3467999999999999999999999999999999999964 589999999999999999999999999887
Q ss_pred hhhhccCCCC
Q 023370 270 AIKALGSFRS 279 (283)
Q Consensus 270 ~~~~~~~~~~ 279 (283)
.+.+-++..|
T Consensus 243 ~~~~~~~~~~ 252 (256)
T PLN00167 243 QDDRGSSTGD 252 (256)
T ss_pred cCCCCCCccc
Confidence 6665554443
No 10
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=9.4e-46 Score=325.19 Aligned_cols=227 Identities=37% Similarity=0.577 Sum_probs=188.5
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cC-CCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHH
Q 023370 33 ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKK-QS-DACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 110 (283)
Q Consensus 33 ~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~ 110 (283)
|...++.+|++++||+|||+++|++++++..... .. ......+.+.+++++|+.+++.+++++++||+|+|||+|+++
T Consensus 11 ~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~ 90 (250)
T PLN00166 11 DSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGL 90 (250)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence 3445778899999999999999999988664211 11 111123566789999999999999999999999999999999
Q ss_pred HHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 023370 111 FLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (283)
Q Consensus 111 ~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~ 190 (283)
++.|+++|.+.++|+++|++|+++|+.+.+.+++++. .......++.+..++++.|+++|++|+++++...+++++
T Consensus 91 ~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~ 166 (250)
T PLN00166 91 AIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGES----VPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKK 166 (250)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999998875421 111223456788899999999999999999987665443
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcchh
Q 023370 191 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 191 ~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~ 269 (283)
... ..+.|+.+|+.+...++.++++||++|||||+|||+++.+ +|+++|+||++|++|+++|+++|+.++.+.
T Consensus 167 ~~~---~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~---~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~ 239 (250)
T PLN00166 167 GSL---GTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG---DFSQIWIYWVGPLVGGALAGLIYGDVFIGS 239 (250)
T ss_pred ccc---ccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC---CCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 211 2468999999999999999999999999999999999964 599999999999999999999999887533
No 11
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=5.8e-46 Score=331.86 Aligned_cols=219 Identities=30% Similarity=0.451 Sum_probs=184.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhc
Q 023370 36 LWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 115 (283)
Q Consensus 36 ~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~ 115 (283)
..+++|++++||+|||+|+|+++++....... ....+++.+++++|+++++.+++++++||||+|||||+++++.++
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~---~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~ 143 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKY---DGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRH 143 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCC
Confidence 45688999999999999999998764422111 112356678899999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 023370 116 VSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSH 195 (283)
Q Consensus 116 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~ 195 (283)
++|.+.+.||++|++|+++|+++++.++++... .+. ..++.+..++++.|+++|++|+++++++.+++++.
T Consensus 144 ~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~~---~g~--t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~---- 214 (298)
T PLN00026 144 FPWKHVPAYIAAQVSASICASFALKGVFHPFMS---GGV--TVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAV---- 214 (298)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---Cce--eeecccHHHHHHHHHHHHHHHHHhheeeecCCCCc----
Confidence 999999999999999999999999999875321 122 23466888999999999999999998764443321
Q ss_pred CCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcchhh
Q 023370 196 VPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAA 270 (283)
Q Consensus 196 ~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~ 270 (283)
....++.+|+++.+.++.++++||++|||||+|+|+++.+ +|+++|+||++|++|+++|+++|+++..+++
T Consensus 215 -~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~---~~~~~wVy~vaPilGAilga~ly~~~~~~~~ 285 (298)
T PLN00026 215 -GELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG---NYRAIWIYLVAPTLGALAGAGTYTAVKLREE 285 (298)
T ss_pred -CCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC---CchheeHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 2356899999999999999999999999999999999853 7999999999999999999999999976554
No 12
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=1.6e-45 Score=324.67 Aligned_cols=227 Identities=36% Similarity=0.587 Sum_probs=188.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cCC-CCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHH
Q 023370 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKK-QSD-ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 109 (283)
Q Consensus 32 ~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla 109 (283)
+|...+..+|++++||+|||+++|++++++..... ... .....+.+.+++++|+.+++.+++++++||+|+|||+|++
T Consensus 12 ~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~ 91 (252)
T PLN00027 12 GEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFG 91 (252)
T ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHH
Confidence 33344678899999999999999999987653211 111 1112356678999999999999999999999999999999
Q ss_pred HHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhc-cCC
Q 023370 110 LFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSAT-DPK 188 (283)
Q Consensus 110 ~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~-~~~ 188 (283)
+++.|+++|.+.+.|+++|++|+++|+.+.+.+.++.. .+.....++.+..++++.|+++|++|+++++... |++
T Consensus 92 ~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~ 167 (252)
T PLN00027 92 AFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLE----TSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPK 167 (252)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cccccCCCCccHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999887765321 1223344677889999999999999999999765 444
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcch
Q 023370 189 RSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRA 268 (283)
Q Consensus 189 ~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~ 268 (283)
+. .. ..+.|+.+|+.+..+.+.++++||++|||||+|||+++.+ .|+++|+||++|++|+++++++|++++.+
T Consensus 168 ~~-~~---~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~---~~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 240 (252)
T PLN00027 168 KG-DL---GIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW---TWTNHWVYWAGPLIGGGIAGLVYELIFIG 240 (252)
T ss_pred cC-Cc---cchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh---cchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 32 11 2478999999999999999999999999999999999964 59999999999999999999999999865
Q ss_pred h
Q 023370 269 A 269 (283)
Q Consensus 269 ~ 269 (283)
+
T Consensus 241 ~ 241 (252)
T PLN00027 241 S 241 (252)
T ss_pred C
Confidence 3
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=1.1e-45 Score=327.84 Aligned_cols=253 Identities=25% Similarity=0.368 Sum_probs=200.4
Q ss_pred ccccccccccccccCCCCCCCCCCCCccC-hhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHH
Q 023370 2 SKEVNEEGQTHRHHHGKDYVDPPPAPLID-MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIA 80 (283)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (283)
|.||.+|+.+...+...|.+..++. .++ ..-....+.+|++++||++||+++|++++++....... ...+.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~---~~~~~~~~a 82 (274)
T PLN00183 7 SRDVDQEAGSTASTLNGDDHPKRQR-LFGCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLSG---GEVGLLEYA 82 (274)
T ss_pred hhhhhhhhcCCCCcccCCCCchhhh-hccccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccC---CccchHHHH
Confidence 4677777766655543333322221 111 12234566789999999999999999998765433211 223566788
Q ss_pred HHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCC
Q 023370 81 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASG 160 (283)
Q Consensus 81 ~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (283)
+++|+.+.+.+++++++||||+|||+|+++++.++++|.+.++|+++|++|+++|+.+.+.+++... ......+.
T Consensus 83 l~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-----~~~~~~p~ 157 (274)
T PLN00183 83 ATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA-----DLMTTKPA 157 (274)
T ss_pred HHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----ccccCCCc
Confidence 8999999999999999999999999999999999999999999999999999999999888876421 11122344
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCC
Q 023370 161 YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240 (283)
Q Consensus 161 ~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~ 240 (283)
.+..++++.|+++|++|+++++...++++.. ....++.+|+.+.+.++..+++||+++||||+|+|+++. ..
T Consensus 158 ~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~~-----~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~---~~ 229 (274)
T PLN00183 158 QGCSSAFWVEFIATFIVMFLAASLTSQPQSL-----GHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS---WD 229 (274)
T ss_pred ccHHHHHHHHHHHHHHHHHhhheeeccccCC-----CCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC---CC
Confidence 4568899999999999999998877765321 235689999999999999999999999999999999985 36
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHcchhhh
Q 023370 241 WDDHWIFWVGPFVGALAAAAYHQYILRAAAI 271 (283)
Q Consensus 241 ~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~~ 271 (283)
|+++|+||++|++|+++|+++|++++.+...
T Consensus 230 ~~~~wvy~vapilGailaa~l~~~l~~~~~~ 260 (274)
T PLN00183 230 FKDIWIYITAPTIGAVAGALMFHLLRLRTQP 260 (274)
T ss_pred hhheehHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999876543
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=5.7e-43 Score=305.32 Aligned_cols=220 Identities=42% Similarity=0.721 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhh
Q 023370 41 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120 (283)
Q Consensus 41 ~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 120 (283)
|++++||+|||+++++++++........+ ...+.+.+++++|+.+.+.+++++++||+|+|||+|+++++.|+++|.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~--~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~ 78 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGG--ASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIR 78 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCC--CCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHH
Confidence 57889999999999999988765443211 2234567889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCC--------cccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCC
Q 023370 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGA--------NTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSAR 192 (283)
Q Consensus 121 ~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~ 192 (283)
.+.|+++|++|+++|+.+.+.+++++++...... +.+.++.+..++++.|+++|++|+++++...++++...
T Consensus 79 ~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~~ 158 (228)
T cd00333 79 VIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPP 158 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccCC
Confidence 9999999999999999999999987665433221 23456678899999999999999999998877654321
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHH
Q 023370 193 DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 265 (283)
Q Consensus 193 ~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~ 265 (283)
. ....|+.+|+.+.+..+.++++||+++||||+++++++.+....|+++|+||++|++|+++|+++|+++
T Consensus 159 ~---~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 159 P---GGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred C---CCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 1 346799999999999999999999999999999999986522369999999999999999999999864
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=3.5e-41 Score=291.75 Aligned_cols=214 Identities=41% Similarity=0.731 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCC-CCC-CcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHH
Q 023370 45 AEFVATLLFLYVSVATVIGHKKQSD-ACG-GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 122 (283)
Q Consensus 45 ~EfigTf~lvf~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~ 122 (283)
+||+||++++|+++++......... +.. ..+.+.+++++|+.+...+++++++||+|+|||||+++++.++++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 5999999999999988765332211 111 12567789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhH
Q 023370 123 AYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPL 202 (283)
Q Consensus 123 ~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l 202 (283)
.|+++|++|+++|+.+.+.++++.............++.+..++++.|+++|++|+++++...+++++... ....|+
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~---~~~~~~ 157 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPR---GGFAPL 157 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCC---CccHHH
Confidence 99999999999999999998876542111111222445688999999999999999999988776544222 236899
Q ss_pred HHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHH
Q 023370 203 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYH 262 (283)
Q Consensus 203 ~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y 262 (283)
.+|+.+...++..+++||+++||||+|+|+++.+ ...|+++|+||++|++|+++++++|
T Consensus 158 ~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~-~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 158 AIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAG-LAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred HHHHHHHHHHHhCCCCcccccCchhhhhHHHHhc-cccccceeHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999864 2579999999999999999999875
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=99.65 E-value=3.2e-16 Score=140.58 Aligned_cols=109 Identities=19% Similarity=0.306 Sum_probs=87.2
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcC
Q 023370 158 ASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN 237 (283)
Q Consensus 158 ~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~ 237 (283)
.++.+.++.++.|+++|++|++++++....+............++.+|+++.+.+++++.+||+++||||++++++..
T Consensus 65 ~~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g-- 142 (298)
T PLN00026 65 PPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALR-- 142 (298)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhC--
Confidence 345677899999999999999999853221111111111123468999999999999999999999999999999973
Q ss_pred CCCCCcceehhhhhHHHHHHHHHHHHHHcch
Q 023370 238 DKAWDDHWIFWVGPFVGALAAAAYHQYILRA 268 (283)
Q Consensus 238 ~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~ 268 (283)
+..|.+.|+||++|++|+++|+++++.++.+
T Consensus 143 ~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~ 173 (298)
T PLN00026 143 HFPWKHVPAYIAAQVSASICASFALKGVFHP 173 (298)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4679999999999999999999999999865
No 17
>PLN00184 aquaporin NIP1; Provisional
Probab=99.65 E-value=4e-16 Score=140.24 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=85.3
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCC
Q 023370 161 YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240 (283)
Q Consensus 161 ~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~ 240 (283)
.+..+.++.|+++|++|+++.++....+............++.+|+++.+.+++++++||+++|||+++++++. ++..
T Consensus 51 ~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~--g~~~ 128 (296)
T PLN00184 51 VPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASC--GRFP 128 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHh--CCCC
Confidence 45678999999999999999987543222111111112346677999999999999999999999999999996 3468
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHcchh
Q 023370 241 WDDHWIFWVGPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 241 ~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~ 269 (283)
|.+.|+||++|++|+++|+++++.++..+
T Consensus 129 ~~~~~~YiiaQllGA~lga~~~~~l~~~~ 157 (296)
T PLN00184 129 LKQVPAYVISQVIGSTLAAATLRLLFGLD 157 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999998543
No 18
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.57 E-value=5.8e-15 Score=131.44 Aligned_cols=107 Identities=19% Similarity=0.276 Sum_probs=87.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCC
Q 023370 160 GYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDK 239 (283)
Q Consensus 160 ~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~ 239 (283)
+.+.++.++.|+++|++++++.+...+.++....+......++.+|+++.+.++.++++||+++|||+++++++.. ..
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g--~i 118 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFG--HF 118 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhc--CC
Confidence 4566789999999999999999876655433211111112577999999999999999999999999999999973 45
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHcch
Q 023370 240 AWDDHWIFWVGPFVGALAAAAYHQYILRA 268 (283)
Q Consensus 240 ~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~ 268 (283)
.|.+.|+||++|++|+++|+++++.++..
T Consensus 119 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 119 PWSKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999998854
No 19
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.56 E-value=1.6e-14 Score=129.20 Aligned_cols=98 Identities=24% Similarity=0.329 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCc
Q 023370 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (283)
Q Consensus 38 ~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (283)
+.++.+++|+++|++|++++++....... . +. ..++++|+.+++.++..+++||+|+|||+|+++++.++ .
T Consensus 157 s~~~a~~~E~l~TfiLv~~i~~~~~~~~~---~----~~-~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~-~ 227 (283)
T PLN00182 157 SSGQALVAEIIISFLLMFVISGVATDSRA---V----GE-LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG-R 227 (283)
T ss_pred chHHHHHHHHHHHHHHHHHHHhheecccc---C----Cc-chhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc-c
Confidence 46789999999999999988865432111 0 11 15688899999999999999999999999999999865 5
Q ss_pred hhhHHHHHHhhhhhhHHHHHHHHHhhh
Q 023370 118 LIRAVAYMVAQCLGAICGVGLVKAFMK 144 (283)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 144 (283)
|.+.|+||++|++|+++|+++.+.+..
T Consensus 228 ~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 228 YKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999888763
No 20
>PLN00166 aquaporin TIP2; Provisional
Probab=99.53 E-value=1.7e-14 Score=127.13 Aligned_cols=106 Identities=19% Similarity=0.307 Sum_probs=85.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhccCC--CCC-C--CCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHh
Q 023370 161 YNKGSALGAEIIGTFVLVYTVFSATDPK--RSA-R--DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY 235 (283)
Q Consensus 161 ~~~~~~~~~E~~~T~~Lv~~vl~~~~~~--~~~-~--~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~ 235 (283)
.+..++++.|+++|++|+++.+...... ... + ........++.+|+.+.+.+++++++||+++||||++++.+.
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~- 93 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG- 93 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh-
Confidence 4567889999999999999998764431 110 0 111122467889999999999999999999999999999996
Q ss_pred cCCCCCCcceehhhhhHHHHHHHHHHHHHHcch
Q 023370 236 NNDKAWDDHWIFWVGPFVGALAAAAYHQYILRA 268 (283)
Q Consensus 236 ~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~ 268 (283)
++..|.+.|+||++|++|+++|+.+++.++..
T Consensus 94 -g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 94 -GNITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34679999999999999999999999988753
No 21
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.52 E-value=4e-14 Score=123.60 Aligned_cols=99 Identities=23% Similarity=0.218 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhc
Q 023370 36 LWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 115 (283)
Q Consensus 36 ~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~ 115 (283)
+.+.+|.++.|+++|+++++.++......... ......++.+|+.+...++..+++||+|+|||+|++.++.++
T Consensus 126 ~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~------~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~ 199 (228)
T cd00333 126 GVSNGNAFFVEFIGTFILVLVVFATTDDPNGP------PPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTG 199 (228)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHccccccC------CCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhc
Confidence 34678999999999999999988765422110 112236788899999999999999999999999999999999
Q ss_pred C--chhhHHHHHHhhhhhhHHHHHHHH
Q 023370 116 V--SLIRAVAYMVAQCLGAICGVGLVK 140 (283)
Q Consensus 116 ~--~~~~~~~yi~aQ~lGa~~g~~~~~ 140 (283)
. +|.+.++|+++|++|+++|+++.+
T Consensus 200 ~~~~~~~~~vy~vap~lGai~aa~l~~ 226 (228)
T cd00333 200 LARHWHYFWVYWVGPLIGAIAGALVYD 226 (228)
T ss_pred cccccceeehhhhHHHHHHHHHHHHHH
Confidence 8 799999999999999999998754
No 22
>PLN00167 aquaporin TIP5; Provisional
Probab=99.52 E-value=3.4e-14 Score=125.59 Aligned_cols=105 Identities=21% Similarity=0.341 Sum_probs=86.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhccCCCC--CC---CCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHh
Q 023370 161 YNKGSALGAEIIGTFVLVYTVFSATDPKRS--AR---DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY 235 (283)
Q Consensus 161 ~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~--~~---~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~ 235 (283)
.+.++.++.|+++|++|+++.++....++. .+ ........++.+|+++.+.+++++++||+++|||+++++.+.
T Consensus 19 ~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~- 97 (256)
T PLN00167 19 RNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG- 97 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh-
Confidence 456788999999999999999876543221 10 111133579999999999999999999999999999999996
Q ss_pred cCCCCCCcceehhhhhHHHHHHHHHHHHHHcc
Q 023370 236 NNDKAWDDHWIFWVGPFVGALAAAAYHQYILR 267 (283)
Q Consensus 236 ~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~ 267 (283)
++..|.+.|+||++|++|+++|+++++.++.
T Consensus 98 -g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 128 (256)
T PLN00167 98 -GHISVPTAMFYWISQMLASVMACLFLKVTTV 128 (256)
T ss_pred -CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 3467999999999999999999999988764
No 23
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.50 E-value=5.7e-14 Score=126.59 Aligned_cols=106 Identities=23% Similarity=0.291 Sum_probs=85.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCC
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAW 241 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~ 241 (283)
+..+.++.|+++|++|+++.++..........+......++.+|+++.+.++..+.+||+++|||+++++.+.. +..|
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g--~i~~ 125 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFG--KFPW 125 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhc--cCCH
Confidence 34578999999999999988875443221111111224678899999999999999999999999999999873 4679
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHcchh
Q 023370 242 DDHWIFWVGPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 242 ~~~~vy~v~p~~Ga~~a~~~y~~~~~~~ 269 (283)
.+.|+||++|++|+++|+++.+.++.+.
T Consensus 126 ~~~~~YiiaQ~lGa~~ga~ll~~~~~~~ 153 (294)
T PTZ00016 126 KKLPGYFVAQLLGAFVGAACVYGLYYGF 153 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999988888654
No 24
>PRK05420 aquaporin Z; Provisional
Probab=99.49 E-value=9e-14 Score=121.39 Aligned_cols=103 Identities=25% Similarity=0.222 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCCCCC-CCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCC
Q 023370 164 GSALGAEIIGTFVLVYTVFSATDPKRSARDSH-VPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWD 242 (283)
Q Consensus 164 ~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~-~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~ 242 (283)
.+.++.|+++|++|+++.+......+...+.. .....++.+|+++.+.+++++++||+++|||+++++.+. ++..|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~--~~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAG--GRFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHh--CCCCHH
Confidence 46899999999999998776432111111111 012348999999999999999999999999999999997 356899
Q ss_pred cceehhhhhHHHHHHHHHHHHHHcch
Q 023370 243 DHWIFWVGPFVGALAAAAYHQYILRA 268 (283)
Q Consensus 243 ~~~vy~v~p~~Ga~~a~~~y~~~~~~ 268 (283)
+.|+||++|++|+++|+.+.+.++.+
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999877777644
No 25
>PLN00027 aquaporin TIP; Provisional
Probab=99.47 E-value=1.6e-13 Score=121.31 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=82.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhc--cCC--CCCCC-CCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhc
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSAT--DPK--RSARD-SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN 236 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~--~~~--~~~~~-~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~ 236 (283)
...+.++.|+++|++|+++.++.. .++ ...+. .......++.+|+++.+.++.++++||+++|||+++++.+.
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~-- 95 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIG-- 95 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHh--
Confidence 346889999999999999888642 111 11000 11112569999999999999999999999999999999974
Q ss_pred CCCCCCcceehhhhhHHHHHHHHHHHHHHcc
Q 023370 237 NDKAWDDHWIFWVGPFVGALAAAAYHQYILR 267 (283)
Q Consensus 237 ~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~ 267 (283)
++..|...|+||++|++|+++|+++++++..
T Consensus 96 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 96 GNITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3467889999999999999999999987763
No 26
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.44 E-value=2.5e-13 Score=117.63 Aligned_cols=96 Identities=24% Similarity=0.249 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhh-c
Q 023370 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR-K 115 (283)
Q Consensus 37 ~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g-~ 115 (283)
.+.++.++.|+++|+++++.++.+....... . .....++.+|+.+...++..+++||+|+|||+|++.++.+ +
T Consensus 119 ~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~----~--~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~ 192 (216)
T TIGR00861 119 VSSGQAFFVEFIGTAILVLVIFATTDPRNRV----P--RGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGL 192 (216)
T ss_pred ccHHHHHHHHHHHHHHHHHHHheeecCCCCC----C--CCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhcc
Confidence 3678999999999999999888654421111 0 1113678899999999999999999999999999999986 5
Q ss_pred CchhhHHHHHHhhhhhhHHHHHH
Q 023370 116 VSLIRAVAYMVAQCLGAICGVGL 138 (283)
Q Consensus 116 ~~~~~~~~yi~aQ~lGa~~g~~~ 138 (283)
.+|.+.++|+++|++|+++++.+
T Consensus 193 ~~~~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 193 AGWGNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred ccccceeHHHHHHHHHHHHHHHh
Confidence 78999999999999999998865
No 27
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.37 E-value=9.3e-13 Score=115.88 Aligned_cols=114 Identities=25% Similarity=0.269 Sum_probs=87.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCC-CCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCC
Q 023370 163 KGSALGAEIIGTFVLVYTVFSATDPKRSARDSHV-PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAW 241 (283)
Q Consensus 163 ~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~-~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~ 241 (283)
..|.+++||++|++|++.-+++.....-.+..++ -....+.+|+++.+.++..+.+||+|+|||++|+..++. +..|
T Consensus 31 l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g--~~p~ 108 (316)
T KOG0224|consen 31 LLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILG--RLPW 108 (316)
T ss_pred HHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhc--CCCh
Confidence 4678999999999999977764433322211111 224578999999999999999999999999999999984 4789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHcchhhhhhccCCC
Q 023370 242 DDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFR 278 (283)
Q Consensus 242 ~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~~~~~~~~~ 278 (283)
.++.+|.++|++||.+|+.....+|.+.-.+.++..|
T Consensus 109 ~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~ 145 (316)
T KOG0224|consen 109 KKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNR 145 (316)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCce
Confidence 9999999999999999987776666655444444333
No 28
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2.6e-12 Score=111.51 Aligned_cols=109 Identities=25% Similarity=0.262 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhc---cCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCC
Q 023370 164 GSALGAEIIGTFVLVYTVFSAT---DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240 (283)
Q Consensus 164 ~~~~~~E~~~T~~Lv~~vl~~~---~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~ 240 (283)
.+.++.|+++|++|++...++. .-+..+..........+.+|+.+.+.++..+++||+|+|||.+++.++.. ...
T Consensus 5 ~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g--~fp 82 (241)
T COG0580 5 TKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRG--RFP 82 (241)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhC--CCC
Confidence 4567999999999999665321 11111111111234789999999999999999999999999999999974 468
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHcchhhhhhc
Q 023370 241 WDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL 274 (283)
Q Consensus 241 ~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~~~~~ 274 (283)
|++...||++|++|+++|+.+...++.++..+.+
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~ 116 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETE 116 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 9999999999999999999999999988776665
No 29
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.4e-11 Score=107.13 Aligned_cols=108 Identities=24% Similarity=0.234 Sum_probs=86.9
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCC
Q 023370 160 GYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDK 239 (283)
Q Consensus 160 ~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~ 239 (283)
..+.++..+.||++|++++++.+..............-....+..|+++.+.++..+.+||+++|||.+++..+.. +.
T Consensus 7 ~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~--~i 84 (238)
T KOG0223|consen 7 SVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGG--KI 84 (238)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhC--CC
Confidence 3467899999999999999988853322221111111235689999999999999999999999999999998863 47
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHcchh
Q 023370 240 AWDDHWIFWVGPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 240 ~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~ 269 (283)
.|.+...||++|++|+++|+.+-+.++..+
T Consensus 85 sl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 85 SLFRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 888999999999999999999999888764
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.18 E-value=1.4e-11 Score=107.40 Aligned_cols=106 Identities=24% Similarity=0.334 Sum_probs=81.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhc---cCCCCCCC-C--CCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHh
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSAT---DPKRSARD-S--HVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY 235 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~---~~~~~~~~-~--~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~ 235 (283)
+.+|.+++|+++|+++++...... ........ + ......++..|+.+.+.++..++.||+++|||.+++..+.
T Consensus 6 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~- 84 (227)
T PF00230_consen 6 SLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALT- 84 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeee-
Confidence 457899999999999998776521 11111100 0 0012456677999999999999999999999999999886
Q ss_pred cCCCCCCcceehhhhhHHHHHHHHHHHHHHcchh
Q 023370 236 NNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 236 ~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~ 269 (283)
++..|.+..+|+++|++|+++|+.+.+.++++.
T Consensus 85 -g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~ 117 (227)
T PF00230_consen 85 -GRISWKKAIVYIIAQFLGAFLGALLVYALYPDS 117 (227)
T ss_dssp -TSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH
T ss_pred -eeecccceeeEEeeccccccccccchhhcccCc
Confidence 357899999999999999999999999888764
No 31
>PRK10805 formate transporter; Provisional
Probab=95.51 E-value=1.4 Score=39.89 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHhcC-ccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhh--hhhhcCCC
Q 023370 77 LGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH--EYNSLGGG 153 (283)
Q Consensus 77 ~~~~~~~g~~~~~~i~~~~~-iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~--~~~~~~~~ 153 (283)
+..++.+.+.+...++.-+. .+| |-..++ ..+.+|.+|.+.+-.|.-=++|=++|+++.-.+... ........
T Consensus 69 ll~~~~F~vGlilIvl~g~eLFTg---n~l~~~-~~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T PRK10805 69 LVGGICFSLGLILCVVCGADLFTS---TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_pred HHHHHHHHHHHHHHHHhCcccchh---hHHHHH-HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccH
Confidence 44455566555555555444 334 555554 467789999988866655556666655554333211 00000000
Q ss_pred -------CcccCCCCcchhhHHHHHHHHHHHHHHHHHhc
Q 023370 154 -------ANTVASGYNKGSALGAEIIGTFVLVYTVFSAT 185 (283)
Q Consensus 154 -------~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~ 185 (283)
.....-+.+.++.|+-=.+|-++..+.++...
T Consensus 145 ~~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~~ 183 (285)
T PRK10805 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSY 183 (285)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001134567778888888888888777433
No 32
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=94.97 E-value=2.5 Score=37.64 Aligned_cols=187 Identities=17% Similarity=0.138 Sum_probs=100.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhh-hhcCC
Q 023370 74 VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEY-NSLGG 152 (283)
Q Consensus 74 ~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~-~~~~~ 152 (283)
...+..++.+++.+.+.+++-+..--+ |=-........++++|.+.+--|.--.+|=++|++++..++.-.- .....
T Consensus 62 ~~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~ 139 (265)
T COG2116 62 LAKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTAN 139 (265)
T ss_pred hHHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 345666777777766666654443211 433444456678999999999998888999998888776662110 01111
Q ss_pred CCcc--------cCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcc
Q 023370 153 GANT--------VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGIN 224 (283)
Q Consensus 153 ~~~~--------~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~N 224 (283)
+... -.-+.+..+.|..=.+|-++..+.++..-..|... -.-+.+-+.+. .+...++.=...|
T Consensus 140 ~~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~~k~~~-------~K~~~m~~pv~--~Fv~~GfeH~VAN 210 (265)
T COG2116 140 GQWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYSAKDGA-------AKIFAIILPVM--LFVASGFEHSVAN 210 (265)
T ss_pred chhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhcccchh-------hHHHHHHHHHH--HHHHcCCceeeeh
Confidence 1110 01123446677777777777777776543322211 11233333333 3333344434556
Q ss_pred cchhhhHHHHhcCCCCCCc-ce---eh-hhhhHHH-HHHHHHHHHHHcchhhhh
Q 023370 225 PARSFGAAVIYNNDKAWDD-HW---IF-WVGPFVG-ALAAAAYHQYILRAAAIK 272 (283)
Q Consensus 225 PA~~l~~~i~~~~~~~~~~-~~---vy-~v~p~~G-a~~a~~~y~~~~~~~~~~ 272 (283)
=..-. +.....+...|.. .| ++ .+|.++| +++-++.|.++++.+.++
T Consensus 211 m~~i~-~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~~~~ 263 (265)
T COG2116 211 MFMIP-WAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQNRY 263 (265)
T ss_pred HHHHH-HHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhccccccc
Confidence 22211 2333333445655 22 22 2567776 455678888888766543
No 33
>PRK11562 nitrite transporter NirC; Provisional
Probab=94.92 E-value=2.6 Score=37.68 Aligned_cols=192 Identities=10% Similarity=0.069 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhh---hhhcCCC
Q 023370 77 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE---YNSLGGG 153 (283)
Q Consensus 77 ~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~---~~~~~~~ 153 (283)
+..+..+++.+.+.++.-+..-=+ |=.......+.||.+|.+.+-.|.-=++|=++|+++...+.... .......
T Consensus 59 li~g~~F~~GLilVi~~G~eLFTg--n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~ 136 (268)
T PRK11562 59 LVMGATFGIALTLVIIAGSELFTG--HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTS 136 (268)
T ss_pred HHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 334555666555555543332211 43444456677889999888887777777777776655543211 0000000
Q ss_pred C----cccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhh
Q 023370 154 A----NTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSF 229 (283)
Q Consensus 154 ~----~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l 229 (283)
. ....-..+..+.|+.=.+|-++..+.++.....+.. ... +.+-+.+.+-+..+ ..=...| .--+
T Consensus 137 ~~~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~~~~~~~------gKi--~~i~~pI~~Fv~~G--FEH~IAN-m~~~ 205 (268)
T PRK11562 137 IVHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMAIRTEGA------AKF--IAIWWCLLAFIASG--YEHSVAN-MTLF 205 (268)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcccc------chh--HHHHHHHHHHHHcC--CcchhHh-HHHH
Confidence 0 000112456677888888888888877754332211 112 22222232222222 2222344 1122
Q ss_pred hHHHHhcC--CCCCC---ccee-hhhhhHHHH-HHHHHHHHHHcchhhhhhccCCCCCC
Q 023370 230 GAAVIYNN--DKAWD---DHWI-FWVGPFVGA-LAAAAYHQYILRAAAIKALGSFRSNP 281 (283)
Q Consensus 230 ~~~i~~~~--~~~~~---~~~v-y~v~p~~Ga-~~a~~~y~~~~~~~~~~~~~~~~~~~ 281 (283)
...++.+. ...|. +.++ =.+|.++|+ ++-++.|.++++++.+..+.++++.+
T Consensus 206 ~l~~~~~~~~~~~~~~~~~nlipvtLGNivGG~v~vg~~y~~~~~~~~~~~~~~~~~~~ 264 (268)
T PRK11562 206 ALSWFGHHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKANRPVAAKFNQTE 264 (268)
T ss_pred HHHHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCchhhhHhhhh
Confidence 22222111 11121 1222 347899988 56678889999888777777777654
No 34
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=81.54 E-value=36 Score=29.81 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhh-cCC-C-
Q 023370 77 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNS-LGG-G- 153 (283)
Q Consensus 77 ~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~-~~~-~- 153 (283)
+..++.+.+.+...++.-+..- -=|-......++.||.+|.+.+-.|.--++|=++|+.+.-.+....... ... .
T Consensus 44 ~l~~~~F~~gl~~Iv~~g~eLf--Tgn~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~ 121 (239)
T TIGR00790 44 LVGGATFPIGLILVVIAGSDLF--TGNTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPW 121 (239)
T ss_pred HHHHHHHHHHHheeeeeCcccc--ccchHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHH
Confidence 3345555544443333322211 1144444445678899999888888777777777776655543211000 000 0
Q ss_pred ------CcccCCCCcchhhHHHHHHHHHHHHHHHHH
Q 023370 154 ------ANTVASGYNKGSALGAEIIGTFVLVYTVFS 183 (283)
Q Consensus 154 ------~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~ 183 (283)
.....-+.+..+.|+.=.+|.++..+.++.
T Consensus 122 ~~~~~~~a~~K~~~~~~~~f~~gilcn~lV~lav~~ 157 (239)
T TIGR00790 122 GVGSLAIAEHKAHHTFVEAFFLGILCNWLVCLAVWM 157 (239)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000112346677788888888888877764
No 35
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=78.68 E-value=46 Score=29.36 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCC-
Q 023370 75 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG- 153 (283)
Q Consensus 75 ~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~- 153 (283)
..+..++.+++.+...+..-+..- -=|-......++.+|.+|.+.+-.|.-=++|=++|+++.-.+..........+
T Consensus 56 ~~l~~g~~F~~Gl~lIv~~g~eLf--Tgn~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~ 133 (250)
T PF01226_consen 56 AKLVGGLVFPIGLVLIVFLGGELF--TGNMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPA 133 (250)
T ss_dssp HHHHHHHHHTHHHHHHHHHT---T--TTTCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcchhc--ccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHH
Confidence 344556666666655555544432 12666666677789999999887777777777777766555543211000000
Q ss_pred -------CcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCC
Q 023370 154 -------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPK 188 (283)
Q Consensus 154 -------~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~ 188 (283)
.....-..+.++.|+.=.+|.++..+.++.....|
T Consensus 134 ~~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~~~~~ 175 (250)
T PF01226_consen 134 MGEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLAFAAK 175 (250)
T ss_dssp HHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00011234667788888888888888887654433
No 36
>PRK09713 focB putative formate transporter; Provisional
Probab=78.07 E-value=53 Score=29.65 Aligned_cols=106 Identities=8% Similarity=0.030 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhh-hhhhcCCCC-
Q 023370 77 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGGA- 154 (283)
Q Consensus 77 ~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~-~~~~~~~~~- 154 (283)
+..++.+.+.+.+.++.-+..-=+ |=. ++.....++.+|++..-.+.-=++|=++|+++.-.+... .....+...
T Consensus 68 ll~g~~F~vGLilIv~~g~ELfTg--N~~-~~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~~ 144 (282)
T PRK09713 68 LVGGLCFTLGFILLAVCGTSLFTS--SVM-TVMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMW 144 (282)
T ss_pred HHHHHHHHHHHHHHHHhCccccHH--HHH-HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhH
Confidence 344555666555555554442212 222 223356788898888855555555555555444333221 100000000
Q ss_pred -------cccCCCCcchhhHHHHHHHHHHHHHHHHHhc
Q 023370 155 -------NTVASGYNKGSALGAEIIGTFVLVYTVFSAT 185 (283)
Q Consensus 155 -------~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~ 185 (283)
....-+.+..+.|+--.+|-++..+.++...
T Consensus 145 ~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~~ 182 (282)
T PRK09713 145 GVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMSY 182 (282)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0001234667788888888888888887543
No 37
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=69.09 E-value=1.3e+02 Score=30.07 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhh
Q 023370 105 AVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH 145 (283)
Q Consensus 105 avTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~ 145 (283)
+|+.+.+....-|......++.+.++|+.+|.+..+.++|.
T Consensus 373 ~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~ 413 (650)
T PF04632_consen 373 AVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPH 413 (650)
T ss_pred HHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333344445578889999999999999999998888774
No 38
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=66.98 E-value=14 Score=25.62 Aligned_cols=38 Identities=24% Similarity=0.547 Sum_probs=22.4
Q ss_pred chhhhHHHHhcCCCCCCcceehhhhhHHHHHHHH-HHHHHHc
Q 023370 226 ARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA-AYHQYIL 266 (283)
Q Consensus 226 A~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~-~~y~~~~ 266 (283)
..++|-++....+..-+. +.||++ +|+++|- +++..++
T Consensus 9 ~~tlG~~vL~~rG~~~~~-~WyWIg--vgaL~G~~vlFNil~ 47 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTES-YWYWIG--VGALLGFIVLFNILF 47 (65)
T ss_pred CCcHHHHHHHHcCCCCCC-cEEeeh--HHHHHHHHHHHHHHH
Confidence 367888887543333334 448887 6777774 4444443
No 39
>COG0730 Predicted permeases [General function prediction only]
Probab=43.61 E-value=2.2e+02 Score=24.74 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=25.4
Q ss_pred HHhhcCchhhHHHHHHhhhhhhHHHHHHHHHh
Q 023370 111 FLARKVSLIRAVAYMVAQCLGAICGVGLVKAF 142 (283)
Q Consensus 111 ~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~ 142 (283)
.-.++.+|+....+..+=++|+.+|+.+...+
T Consensus 66 ~k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~ 97 (258)
T COG0730 66 LKRGNVDWKLALILLLGALIGAFLGALLALLL 97 (258)
T ss_pred HHcCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33466789999999999999999997666544
No 40
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=39.05 E-value=11 Score=29.13 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.2
Q ss_pred cCccccccChHHHHHHHHhhcC
Q 023370 95 AGISGGHINPAVTFGLFLARKV 116 (283)
Q Consensus 95 ~~iSGah~NPavTla~~l~g~~ 116 (283)
..-|+||+||.+.++-.+..+-
T Consensus 5 ~~Gt~Ghv~P~lala~~L~~rG 26 (139)
T PF03033_consen 5 TGGTRGHVYPFLALARALRRRG 26 (139)
T ss_dssp EESSHHHHHHHHHHHHHHHHTT
T ss_pred EcCChhHHHHHHHHHHHHhccC
Confidence 3457899999999999998653
No 41
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=36.61 E-value=4.1e+02 Score=25.91 Aligned_cols=27 Identities=7% Similarity=-0.036 Sum_probs=21.5
Q ss_pred ceehhhhhHHHHHHHHHHHHHHcchhh
Q 023370 244 HWIFWVGPFVGALAAAAYHQYILRAAA 270 (283)
Q Consensus 244 ~~vy~v~p~~Ga~~a~~~y~~~~~~~~ 270 (283)
.|.|+++=++|+++.++++.++=++..
T Consensus 441 ~~~~~~~~~vG~~v~a~~~~~~k~~~~ 467 (482)
T PRK11404 441 VGSFYLVLAIGLALNISFIIVLKGLWL 467 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 467999999999999999976654443
No 42
>PHA02450 hypothetical protein
Probab=34.81 E-value=17 Score=23.15 Aligned_cols=16 Identities=44% Similarity=0.457 Sum_probs=13.9
Q ss_pred CccccccccccccccC
Q 023370 1 MSKEVNEEGQTHRHHH 16 (283)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (283)
||+++|.|+.++-+.+
T Consensus 1 msg~in~egf~ryggd 16 (53)
T PHA02450 1 MSGEINPEGFTRYGGD 16 (53)
T ss_pred CCcccCcccceeeCCc
Confidence 8999999999987665
No 43
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=33.63 E-value=11 Score=34.97 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.8
Q ss_pred HhcCccccccChHHHHHHHHhh
Q 023370 93 CTAGISGGHINPAVTFGLFLAR 114 (283)
Q Consensus 93 ~~~~iSGah~NPavTla~~l~g 114 (283)
+.++-+|||+.||+.++-.+..
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHh
Confidence 4567789999999999999875
No 44
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=28.01 E-value=98 Score=19.98 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=29.2
Q ss_pred hcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhh
Q 023370 114 RKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYN 148 (283)
Q Consensus 114 g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~ 148 (283)
++.+|.+-+....+-++--++|+-+++.+|+++.+
T Consensus 3 ~Gv~~~~yl~~~~~s~~sM~aGA~vVH~~ykPdlt 37 (47)
T PF14990_consen 3 AGVSWPSYLKSLVASLLSMLAGASVVHNIYKPDLT 37 (47)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhHHHHHHhCccCC
Confidence 45788888888888888889999999999987654
No 45
>PRK10621 hypothetical protein; Provisional
Probab=25.89 E-value=4.5e+02 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.4
Q ss_pred hcCchhhHHHHHHhhhhhhHHHHHHHHHh
Q 023370 114 RKVSLIRAVAYMVAQCLGAICGVGLVKAF 142 (283)
Q Consensus 114 g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~ 142 (283)
++.+|+......++=+.|+.+|+.+...+
T Consensus 73 ~~v~~~~~~~l~~~~l~Ga~~G~~l~~~l 101 (266)
T PRK10621 73 KVVNLADQKLNIAMTFVGSMSGALLVQYV 101 (266)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56789999999999999999999887644
No 46
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=25.37 E-value=19 Score=26.80 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHhcCCCCCCcceehhhhhH
Q 023370 232 AVIYNNDKAWDDHWIFWVGPF 252 (283)
Q Consensus 232 ~i~~~~~~~~~~~~vy~v~p~ 252 (283)
++-.+....|-.|+.||.+|.
T Consensus 58 r~K~g~~~~~l~h~~YW~~p~ 78 (95)
T TIGR02762 58 RIKGGEGENFLLHLFYWYLPG 78 (95)
T ss_pred HHHcCCChhHHHHHHHHHccc
Confidence 344455677888999998775
No 47
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=24.25 E-value=6.7e+02 Score=25.11 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=13.4
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 023370 162 NKGSALGAEIIGTFVLVYTVF 182 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl 182 (283)
+....+..|+++|++=.++..
T Consensus 466 ~Pr~~f~~Q~iG~~ig~~v~~ 486 (624)
T PF03169_consen 466 PPRAQFYAQIIGTIIGAFVAV 486 (624)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 445677788887776555443
No 48
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=23.54 E-value=8.2e+02 Score=25.15 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=22.9
Q ss_pred chhhHHHHHHhhhhhhHHHHHHHHHhhh
Q 023370 117 SLIRAVAYMVAQCLGAICGVGLVKAFMK 144 (283)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 144 (283)
...|....+++.++|+++|..+...+.+
T Consensus 394 T~sRa~~RiiGTliGallA~ll~v~l~P 421 (683)
T PRK11427 394 SYQKMVLRFGGAFCGAILALLFTLLVMP 421 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567888899999999999988877765
No 49
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=23.32 E-value=3.5e+02 Score=27.34 Aligned_cols=169 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHhcCccc-cccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhh
Q 023370 88 FVLVYCTAGISG-GHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSA 166 (283)
Q Consensus 88 ~~~i~~~~~iSG-ah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (283)
.+..|+...+.+ ..+||..-.+......- +.++|+++++++.-.+...-.... ..+....+-.+..-.
T Consensus 349 vl~a~iA~sia~k~g~~pg~~~g~~a~~~~----------sgflg~Ii~~~l~gyv~~~l~k~i-p~~~~~~~~~~~~~~ 417 (631)
T PRK09765 349 VLAAYTAYSLADKPALAPGFAAGLAANMIG----------SGFLGAVVGGLIAGYLMRWVKNHL-RLSSKFNGFLTFYLY 417 (631)
T ss_pred HHHHHHHHHHhcccCcCchhHHHHHHHhcC----------CccHHHHHHHHHHHHHHHHHHHHC-CCchhhhhhcCEEee
Q ss_pred HHHHHHHHHHHHHHHH----HhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCccc-chhhhHHHHhcCCCCC
Q 023370 167 LGAEIIGTFVLVYTVF----SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINP-ARSFGAAVIYNNDKAW 241 (283)
Q Consensus 167 ~~~E~~~T~~Lv~~vl----~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NP-A~~l~~~i~~~~~~~~ 241 (283)
=+.-.+.|..+++.++ ....+.-...-.......++..|+.++.++.....- .+|| |-.++......+ .+
T Consensus 418 Pllt~li~~~l~~~viGp~~~~i~~~l~~~l~~l~~~~~~l~g~iiG~mv~~~m~g---pi~k~a~~~~~~~~~~g--~~ 492 (631)
T PRK09765 418 PVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGSNALLLGAILGFMCSFDLGG---PVNKAAYAFCLGAMANG--VY 492 (631)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC---ccchhHHHHHHHHHhcc--Cc
Q ss_pred Ccc---eehhhhhHHHHHHHHHHHHHHcchhhhh
Q 023370 242 DDH---WIFWVGPFVGALAAAAYHQYILRAAAIK 272 (283)
Q Consensus 242 ~~~---~vy~v~p~~Ga~~a~~~y~~~~~~~~~~ 272 (283)
... +.--..|-+|+.+|.++.+-.|.+++++
T Consensus 493 ~~~~~~~~~~~~~~~g~ala~~l~~k~f~~~~k~ 526 (631)
T PRK09765 493 GPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIE 526 (631)
T ss_pred hHHHHHHHHHhHhHHHHHHHHHHHhcCCCHHHHH
No 50
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=21.50 E-value=4.3e+02 Score=21.52 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=19.1
Q ss_pred hhhHHHHHHhhhhhhHHHHHHHHHh
Q 023370 118 LIRAVAYMVAQCLGAICGVGLVKAF 142 (283)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~ 142 (283)
+...+.+..+-+.|+++|..+.+.+
T Consensus 123 ~~~v~~F~~St~~Ga~ig~~~l~~L 147 (150)
T PF09512_consen 123 FFFVPPFLISTLIGAIIGYILLKAL 147 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888888877665
No 51
>KOG4647 consensus Uncharacterized membrane protein [Function unknown]
Probab=20.43 E-value=1.5e+02 Score=25.76 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=22.8
Q ss_pred CccChhhhccHHHHHHHHHHHHHHHHHHHH
Q 023370 27 PLIDMAELKLWSFYRALIAEFVATLLFLYV 56 (283)
Q Consensus 27 ~~~~~~~~~~~~l~~~~~~EfigTf~lvf~ 56 (283)
++.+-.|.--.++||++++|.+--|++.++
T Consensus 82 ~R~~g~eyv~~sf~~R~~AE~IDffilf~~ 111 (263)
T KOG4647|consen 82 PRVDGVEYVAASFLRRLLAELIDFFILFSF 111 (263)
T ss_pred cccCceeeehhHHHHHHHHHHHHHHHHHHH
Confidence 334445556678999999999998888665
No 52
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=20.35 E-value=8.7e+02 Score=24.27 Aligned_cols=65 Identities=17% Similarity=0.050 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcch
Q 023370 199 LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRA 268 (283)
Q Consensus 199 ~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~ 268 (283)
+....+|.++..........+-....... +..-+. + .....|.|+++=++|.++.++++.++-++
T Consensus 490 i~a~~iGgavgGai~~~~gv~~~ap~gg~-~v~~~~-~---~i~~~~~~iiai~ig~vvt~~~~~~~k~~ 554 (563)
T PRK10712 490 LPCCIVGGALTGAISMAIGAKLMAPHGGL-FVLLIP-G---AITPVLGYLVAIIAGTLVAGLAYAFLKRP 554 (563)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccchh-HHhhHH-H---HhhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44567777777665554444322211111 111110 0 11225779999999999999999876654
No 53
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=20.34 E-value=9.3e+02 Score=24.58 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=37.9
Q ss_pred ccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhh
Q 023370 99 GGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH 145 (283)
Q Consensus 99 Gah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~ 145 (283)
++-+..+|..+++..-..|.....-+..++++|..+|.+..+.++|.
T Consensus 380 ~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vLP~ 426 (652)
T PRK10631 380 GAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVIIPN 426 (652)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677778877777777777778888899999999999998888764
Done!