Query 023370
Match_columns 283
No_of_seqs 176 out of 1372
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 100.0 3.7E-62 1.3E-66 438.0 19.3 281 1-283 24-304 (304)
2 3iyz_A Aquaporin-4; water tran 100.0 1.1E-54 3.9E-59 391.6 24.1 245 17-270 24-273 (340)
3 3gd8_A Aquaporin-4; proton exc 100.0 1.1E-52 3.9E-57 362.9 23.5 222 38-268 2-223 (223)
4 2zz9_A Aquaporin-4; water tran 100.0 1E-52 3.5E-57 376.0 22.7 230 32-270 5-234 (301)
5 1j4n_A Aquaporin 1; membrane p 100.0 4.7E-52 1.6E-56 368.6 22.3 230 32-269 3-236 (271)
6 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 6.3E-52 2.2E-56 366.4 22.8 228 30-270 2-230 (266)
7 2w2e_A AQY1, aquaporin, aquapo 100.0 1.5E-51 5.2E-56 366.0 23.1 224 37-271 42-269 (279)
8 3llq_A Aquaporin Z 2; aquapori 100.0 5.1E-52 1.7E-56 364.0 19.5 222 36-266 26-253 (256)
9 2b6o_A Aquaporin-0, lens fiber 100.0 6.4E-51 2.2E-55 359.9 24.1 226 32-270 2-227 (263)
10 2o9g_A Aquaporin Z; integral m 100.0 1.1E-50 3.9E-55 353.0 21.2 221 39-268 4-232 (234)
11 1ldf_A Glycerol uptake facilit 100.0 7.9E-51 2.7E-55 362.9 20.6 227 37-269 5-258 (281)
12 3c02_A Aquaglyceroporin; membr 100.0 1.5E-50 5.1E-55 357.0 17.5 230 37-272 7-248 (258)
13 2f2b_A Aquaporin AQPM; protein 100.0 1.1E-49 3.8E-54 349.5 21.8 225 38-267 3-245 (246)
14 2f2b_A Aquaporin AQPM; protein 99.6 1.5E-14 5E-19 126.4 10.5 99 38-144 142-245 (246)
15 2b6o_A Aquaporin-0, lens fiber 99.5 1.4E-14 4.9E-19 127.5 8.5 105 162-270 8-112 (263)
16 3d9s_A Aquaporin-5, AQP-5; aqu 99.4 1.1E-13 3.8E-18 121.9 7.5 104 162-269 10-113 (266)
17 3gd8_A Aquaporin-4; proton exc 99.4 2.4E-13 8.3E-18 116.9 8.7 106 163-270 3-110 (223)
18 3llq_A Aquaporin Z 2; aquapori 99.4 1.5E-13 5.1E-18 120.1 7.1 104 161-267 27-132 (256)
19 2zz9_A Aquaporin-4; water tran 99.4 4.5E-13 1.5E-17 119.6 9.7 107 162-270 11-119 (301)
20 3c02_A Aquaglyceroporin; membr 99.4 1.8E-13 6.1E-18 120.3 6.4 108 162-271 8-115 (258)
21 1ldf_A Glycerol uptake facilit 99.4 2.5E-13 8.7E-18 120.7 6.6 107 162-270 6-112 (281)
22 1j4n_A Aquaporin 1; membrane p 99.4 4.2E-13 1.4E-17 118.6 7.6 106 162-269 9-121 (271)
23 3iyz_A Aquaporin-4; water tran 99.4 3.1E-13 1.1E-17 121.9 6.1 106 162-269 50-157 (340)
24 2o9g_A Aquaporin Z; integral m 99.4 3.9E-13 1.3E-17 116.5 6.5 104 163-268 4-108 (234)
25 3cn5_A Aquaporin; membrane pro 99.4 9E-13 3.1E-17 117.9 7.9 107 162-270 59-168 (304)
26 2w2e_A AQY1, aquaporin, aquapo 99.2 2.1E-11 7.3E-16 107.9 10.0 102 38-147 167-268 (279)
27 3kcu_A Probable formate transp 94.6 1.5 5E-05 38.4 15.3 110 76-188 68-186 (285)
28 3kly_A Putative formate transp 91.3 5.3 0.00018 34.7 13.8 107 76-187 67-184 (280)
29 3tds_E Formate/nitrite transpo 90.7 1.2 3.9E-05 38.7 8.9 185 75-272 63-262 (268)
30 4fc4_A Nitrite transporter NIR 62.2 73 0.0025 27.1 13.7 108 76-185 58-172 (261)
31 3s2u_A UDP-N-acetylglucosamine 43.7 2.8 9.7E-05 37.4 -1.6 22 94-115 8-29 (365)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=3.7e-62 Score=438.01 Aligned_cols=281 Identities=84% Similarity=1.416 Sum_probs=210.5
Q ss_pred CccccccccccccccCCCCCCCCCCCCccChhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHH
Q 023370 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIA 80 (283)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (283)
|.+|+.+| +|..++.||+++|+..+..+.+|.++++++|++++||+|||+|+|++++++.......+++...+++.++
T Consensus 24 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~ia 101 (304)
T 3cn5_A 24 MSKEVSEE--AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIA 101 (304)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHH
T ss_pred HHHHhhcc--ccccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeeh
Confidence 67777442 2344567999999988888889999999999999999999999999999887654433333456788999
Q ss_pred HHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCC
Q 023370 81 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASG 160 (283)
Q Consensus 81 ~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (283)
+++|+++++.+++++++||||+|||||+++++.|+++|.+++.|+++|++||++|+++++.++++.++....+.+.+.++
T Consensus 102 la~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~ 181 (304)
T 3cn5_A 102 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALG 181 (304)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTT
T ss_pred hhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998776665555556677
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCC
Q 023370 161 YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240 (283)
Q Consensus 161 ~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~ 240 (283)
.+..++|+.|+++||+|+++++..+|+++....++.+.+.|+.||+++.++.++++++||++|||||||||+++++++..
T Consensus 182 ~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~ 261 (304)
T 3cn5_A 182 YNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 261 (304)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCC
Confidence 88999999999999999999998888665433222234789999999999999999999999999999999999654567
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHcchhhhhhccCCCCCCCC
Q 023370 241 WDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 283 (283)
Q Consensus 241 ~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~~~~~~~~~~~~~~ 283 (283)
|+++|+||++|++|+++|+++|++++.+++.+.++++|..++|
T Consensus 262 w~~~WvywvgPiiGa~laa~~y~~l~~~~~~~~~~~~~~~~~~ 304 (304)
T 3cn5_A 262 WDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSNPTN 304 (304)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHTTSCCCC-------------
T ss_pred cCceEEEeehHHHHHHHHHHHHHHHhCCCCCCcccccccCCCC
Confidence 9999999999999999999999999998888888888888776
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-54 Score=391.61 Aligned_cols=245 Identities=40% Similarity=0.657 Sum_probs=204.0
Q ss_pred CCCCCCCCCCCccC-----hhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHH
Q 023370 17 GKDYVDPPPAPLID-----MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLV 91 (283)
Q Consensus 17 ~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 91 (283)
.|++.+|...|... .++....+++|++++||+|||+|+|++++++.+.. ...+....+++.+++++|+++++.+
T Consensus 24 ~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~-~~~~~~~~g~l~Iala~GlaV~~~v 102 (340)
T 3iyz_A 24 RDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWG-GSENPLPVDMVLISLCFGLSIATMV 102 (340)
T ss_pred CCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCcchHHHHHHHHHHHHHhe
Confidence 35555554444211 23444568999999999999999999999887542 2122234578889999999999999
Q ss_pred HHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHH
Q 023370 92 YCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEI 171 (283)
Q Consensus 92 ~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 171 (283)
++++++||||+|||||+++++.|+++|.+++.||++|++||++|+++++.++++.... ..+.+.+.++.+..++|+.|+
T Consensus 103 ~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~-~lg~~~~~~~~s~~~~f~~E~ 181 (340)
T 3iyz_A 103 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVEL 181 (340)
T ss_pred eEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcC-ceeeccCCCccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998765321 223344556788899999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhh
Q 023370 172 IGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 251 (283)
Q Consensus 172 ~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p 251 (283)
++||+|+++++++.|+++... ....|+.||+++.+....++++||++|||||||||+++.+ .|.++|+||+||
T Consensus 182 i~Tf~Lv~~Ila~~d~~~~~~----~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~---~w~~~WVywvgP 254 (340)
T 3iyz_A 182 IITFQLVFTIFASCDDKRTDV----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGP 254 (340)
T ss_pred HHHHHHHHHHHHhhcCccCCc----ccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc---CCCcEeehhHHH
Confidence 999999999999888765432 2467999999998888888899999999999999999864 699999999999
Q ss_pred HHHHHHHHHHHHHHcchhh
Q 023370 252 FVGALAAAAYHQYILRAAA 270 (283)
Q Consensus 252 ~~Ga~~a~~~y~~~~~~~~ 270 (283)
++|+++|+++|++++.|++
T Consensus 255 iiGailaallY~~l~~p~~ 273 (340)
T 3iyz_A 255 IIGAVLAGALYEYVFCPDV 273 (340)
T ss_pred HHHHHHHHHHHHHHhCCCh
Confidence 9999999999999997654
No 3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-52 Score=362.88 Aligned_cols=222 Identities=41% Similarity=0.713 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCc
Q 023370 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (283)
Q Consensus 38 ~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (283)
+++|++++||+|||+|+|++++++.+.. ..++....+++.+++++|+++++.+++++++||||+|||||+++++.|+++
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~-~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~ 80 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWG-GTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS 80 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTT-TTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCC
Confidence 4789999999999999999999887542 222223457889999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 023370 118 LIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVP 197 (283)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~ 197 (283)
|++++.|+++|++|+++|+.+++.+++++... ..+.+.+.++.+..++++.|+++|++|+++++...|+|+... .
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~-~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~----~ 155 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDV----T 155 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCc----c
Confidence 99999999999999999999999999875432 223445566788899999999999999999999888776432 2
Q ss_pred CchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcch
Q 023370 198 VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRA 268 (283)
Q Consensus 198 ~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~ 268 (283)
...|+.||+.+.+....+++.||++|||||||||+++.+ +|+++|+||++|++|+++|+++|+++++|
T Consensus 156 ~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~---~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p 223 (223)
T 3gd8_A 156 GSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGGLYEYVFCP 223 (223)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc---CCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence 467999999998887888889999999999999999965 69999999999999999999999999865
No 4
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=1e-52 Score=375.97 Aligned_cols=230 Identities=40% Similarity=0.685 Sum_probs=195.5
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHH
Q 023370 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 111 (283)
Q Consensus 32 ~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~ 111 (283)
++..+.+++|++++||+|||+|+|++++++.+.... ......+++.+++++|+++++.+++++++||||+|||||++++
T Consensus 5 ~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~-~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 83 (301)
T 2zz9_A 5 KGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGS-ENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMV 83 (301)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC--CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHH
Confidence 456678899999999999999999999887654321 1223456888999999999999999999999999999999999
Q ss_pred HhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 023370 112 LARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSA 191 (283)
Q Consensus 112 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~ 191 (283)
+.|+++|.+++.|+++|++||++|+++++.++++.... ..+.+.+.++.+..++|+.|+++||+|+++++++.|+++..
T Consensus 84 ~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~-~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~ 162 (301)
T 2zz9_A 84 CTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTD 162 (301)
T ss_dssp HTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGG-TSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSSC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-ceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999865432 22344455678889999999999999999999988776542
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcchhh
Q 023370 192 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAA 270 (283)
Q Consensus 192 ~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~ 270 (283)
. ..+.|+.||+++.+....++++||++|||||||||+++.+ .|.++|+||++|++|+++|+++|++++.+++
T Consensus 163 ~----~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~---~w~~~WVy~vgPiiGailaa~ly~~l~~~~~ 234 (301)
T 2zz9_A 163 V----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGALYEYVFCPDV 234 (301)
T ss_dssp C----SSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC---CCTTTTHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred c----cchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC---CCcceeeeeeHHHHHHHHHHHHHHHHhCCch
Confidence 1 3478999999998888888899999999999999999964 6999999999999999999999999987654
No 5
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=4.7e-52 Score=368.60 Aligned_cols=230 Identities=42% Similarity=0.722 Sum_probs=195.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----CCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHH
Q 023370 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQ----SDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVT 107 (283)
Q Consensus 32 ~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavT 107 (283)
+|.++++++|++++||+||++|+|++++++...... .......+++.+++++|+++++.+++++++||||+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHH
Confidence 356677899999999999999999999987754321 1111223578899999999999999999999999999999
Q ss_pred HHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccC
Q 023370 108 FGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDP 187 (283)
Q Consensus 108 la~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~ 187 (283)
+++++.|+++|.+++.|+++|++||++|+++++.++++... ...+.+.+.++.+..++++.|+++|++|++++++..|+
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~ 161 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD-NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDR 161 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTT-CCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-cccccccCCCccchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999864321 12233445567788899999999999999999998887
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcc
Q 023370 188 KRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILR 267 (283)
Q Consensus 188 ~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~ 267 (283)
++... ..+.|+.||+.+.+....++++||++|||||||||+++.+ +|+++|+||++|++|+++|+++|++++.
T Consensus 162 ~~~~~----~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~---~~~~~wv~~vgP~~Ga~la~~~y~~~~~ 234 (271)
T 1j4n_A 162 RRRDL----GGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAALAVLIYDFILA 234 (271)
T ss_dssp SCCCC----CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT---CCTTTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cCCCc----cccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC---CCcceeHHHHHHHHHHHHHHHHHHHHhC
Confidence 65431 3478999999999888888889999999999999999854 7999999999999999999999999986
Q ss_pred hh
Q 023370 268 AA 269 (283)
Q Consensus 268 ~~ 269 (283)
++
T Consensus 235 ~~ 236 (271)
T 1j4n_A 235 PR 236 (271)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 6
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-52 Score=366.40 Aligned_cols=228 Identities=37% Similarity=0.619 Sum_probs=199.3
Q ss_pred ChhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHH
Q 023370 30 DMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 109 (283)
Q Consensus 30 ~~~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla 109 (283)
+.+|.++++++|++++||+|||+|+|++++++.... ....+++.+++++|+++++.+++++++||||+|||||++
T Consensus 2 ~~~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~-----~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla 76 (266)
T 3d9s_A 2 SKKEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWP-----SALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLA 76 (266)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-----SSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred ChhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHH
Confidence 356788889999999999999999999999875311 123467889999999999999999999999999999999
Q ss_pred HHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCC
Q 023370 110 LFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (283)
Q Consensus 110 ~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~ 189 (283)
+++.|+++|.+++.|+++|++||++|+++++.+++++... ..+.+.+.++.+..++++.|+++|++|+++++++.|+++
T Consensus 77 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~-~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~ 155 (266)
T 3d9s_A 77 LLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARG-NLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRR 155 (266)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccC-ceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999865422 233444556778899999999999999999999888665
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCc-ceehhhhhHHHHHHHHHHHHHHcch
Q 023370 190 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDD-HWIFWVGPFVGALAAAAYHQYILRA 268 (283)
Q Consensus 190 ~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~-~~vy~v~p~~Ga~~a~~~y~~~~~~ 268 (283)
... ..+.|+.||+++.+..+.++++||++|||||||||+++.+ .|++ +|+||++|++|+++|+++|++++.|
T Consensus 156 ~~~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~ 228 (266)
T 3d9s_A 156 TSP----VGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN---RFSPAHWVFWVGPIVGAVLAAILYFYLLFP 228 (266)
T ss_dssp CSC----CCCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT---CCCTTHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCc----cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC---CcccCEeeeehHHHHHHHHHHHHHHHHhCC
Confidence 422 2478999999999999999999999999999999999965 7988 9999999999999999999999876
Q ss_pred hh
Q 023370 269 AA 270 (283)
Q Consensus 269 ~~ 270 (283)
+.
T Consensus 229 ~~ 230 (266)
T 3d9s_A 229 NS 230 (266)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 7
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=1.5e-51 Score=365.99 Aligned_cols=224 Identities=33% Similarity=0.510 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hccc--cCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHH
Q 023370 37 WSFYRALIAEFVATLLFLYVSVATVI--GHKK--QSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 112 (283)
Q Consensus 37 ~~l~~~~~~EfigTf~lvf~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l 112 (283)
++.+|++++||+|||+|+|++++++. +... ........+++.+++++|+++++.+++++++||||+|||||+++++
T Consensus 42 ~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~ 121 (279)
T 2w2e_A 42 RNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVL 121 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHHH
Confidence 46789999999999999999988642 2111 1111223467889999999999999999999999999999999999
Q ss_pred hhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCC
Q 023370 113 ARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSAR 192 (283)
Q Consensus 113 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~ 192 (283)
.|+++|.+++.|+++|++||++|+++++.++++... ..+.+.++.+..++++.|+++|++|++++++..++++..
T Consensus 122 ~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~----~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~~- 196 (279)
T 2w2e_A 122 ARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIA----FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRA- 196 (279)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC----CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCSTT-
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccce----eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCCC-
Confidence 999999999999999999999999999999876531 233444567888999999999999999999887665432
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcchhhh
Q 023370 193 DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAI 271 (283)
Q Consensus 193 ~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~~ 271 (283)
..+.|+.||+++.++.++++++||++|||||||||+++.+ ..|.++|+||++|++|+++|+++|++++..+.+
T Consensus 197 ----~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~--~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~~ 269 (279)
T 2w2e_A 197 ----TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAAR--SFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQ 269 (279)
T ss_dssp ----GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHT--CCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ----cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhc--cchhhhhHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 3478999999999999999999999999999999999975 345789999999999999999999999866543
No 8
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=5.1e-52 Score=363.97 Aligned_cols=222 Identities=32% Similarity=0.535 Sum_probs=186.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhc
Q 023370 36 LWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 115 (283)
Q Consensus 36 ~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~ 115 (283)
+.+++|++++||+|||+|+|++|+++...... +..+.+++.+++++|+++++.+++++++||||+|||||+++++.|+
T Consensus 26 ~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~--~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~ 103 (256)
T 3llq_A 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAF--PELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGR 103 (256)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTC--TTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcC
Confidence 45679999999999999999999986533321 1234578899999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhhhhhHHHHHHHHHhhhhh--hhhcCCC---C-cccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCC
Q 023370 116 VSLIRAVAYMVAQCLGAICGVGLVKAFMKHE--YNSLGGG---A-NTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (283)
Q Consensus 116 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~--~~~~~~~---~-~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~ 189 (283)
++|.+++.|+++|++||++|+++++.++++. ++..+.. . ...+...+..++++.|+++|++|+++++++.|+++
T Consensus 104 ~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~d~~~ 183 (256)
T 3llq_A 104 FPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRV 183 (256)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999998542 2111111 1 11223567889999999999999999999888654
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHc
Q 023370 190 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 266 (283)
Q Consensus 190 ~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~ 266 (283)
. +.+.|+.||+++.++.++.+++||++|||||||||+++.+ +..|+++|+||++|++|+++|+++|+++.
T Consensus 184 ~------~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g-~~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 184 P------AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG-GWALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp C------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-HHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred C------ccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcC-CCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 3 2478999999999999999999999999999999999975 34577999999999999999999999885
No 9
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=6.4e-51 Score=359.91 Aligned_cols=226 Identities=35% Similarity=0.615 Sum_probs=195.5
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHH
Q 023370 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 111 (283)
Q Consensus 32 ~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~ 111 (283)
+|.++++++|++++||+|||+|+|++++++... .....+++.+++++|+++++.+++++++||||+|||||++++
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~-----~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~ 76 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFL 76 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----CSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHH
Confidence 355667899999999999999999999887532 112346778999999999999999999999999999999999
Q ss_pred HhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 023370 112 LARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSA 191 (283)
Q Consensus 112 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~ 191 (283)
+.|+++|.+++.|+++|++|+++|+.+++.+++++... ..+.+.+.++.+..++++.|+++|++|+++++++.|+++..
T Consensus 77 ~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~ 155 (263)
T 2b6o_A 77 VGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG 155 (263)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCS-SCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTSCS
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccc-ccccccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999865422 22344456778889999999999999999999988766542
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcchhh
Q 023370 192 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAA 270 (283)
Q Consensus 192 ~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~ 270 (283)
. ..+.|+.||+.+.++.+.++++||++|||||||||+++.+ +|+++|+||++|++|+++|+++|++++.++.
T Consensus 156 ~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~ 227 (263)
T 2b6o_A 156 R----LGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLYDFLLFPRL 227 (263)
T ss_dssp S----CCCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT---CCTTCTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred C----cccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC---CccceeHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 2 3478999999999999999999999999999999999864 7999999999999999999999999987643
No 10
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=1.1e-50 Score=352.95 Aligned_cols=221 Identities=30% Similarity=0.540 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCch
Q 023370 39 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL 118 (283)
Q Consensus 39 l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~ 118 (283)
++|++++||+|||+|+|++++++...... ++.+.+++.+++++|+++++.+++++++||||+|||||+++++.|+++|
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~--~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGF--PELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPA 81 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--TTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCH
Confidence 67999999999999999999887532211 1234578889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHhhhhh--hhhc-----CCCC-cccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 023370 119 IRAVAYMVAQCLGAICGVGLVKAFMKHE--YNSL-----GGGA-NTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (283)
Q Consensus 119 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~~--~~~~-----~~~~-~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~ 190 (283)
++++.|+++|++|+++|+.+++.++++. ++.. ..+. ...+.+.+..++++.|+++|++|+++++...|+++.
T Consensus 82 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~~~ 161 (234)
T 2o9g_A 82 KEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAP 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHTSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999998743 2110 0111 112235788899999999999999999998875432
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcch
Q 023370 191 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRA 268 (283)
Q Consensus 191 ~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~ 268 (283)
+.+.|+.||+.+.++.+..+++||++|||||||||+++.+ +..|+++|+||++|++|+++|+++|++++++
T Consensus 162 ------~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g-~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~ 232 (234)
T 2o9g_A 162 ------AGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQG-GWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232 (234)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-SHHHHSHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ------cchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhC-CCCCceeeeeehHHhHHHHHHHHHHHHHcCC
Confidence 3478999999999999999999999999999999999975 3567799999999999999999999999865
No 11
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=7.9e-51 Score=362.93 Aligned_cols=227 Identities=28% Similarity=0.403 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcC
Q 023370 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 116 (283)
Q Consensus 37 ~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~ 116 (283)
.+++|++++||+|||+|+|++++++....... ...+.+.+++++|+++++.+++++++||||+|||||+++++.|++
T Consensus 5 ~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~---~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 81 (281)
T 1ldf_A 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAG---ASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACF 81 (281)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCC
Confidence 35789999999999999999998876543322 234566799999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcC-----------------CCCcccCCCCcchhhHHHHHHHHHHHHH
Q 023370 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLG-----------------GGANTVASGYNKGSALGAEIIGTFVLVY 179 (283)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~E~~~T~~Lv~ 179 (283)
+|.+++.|+++|++||++|+++++.++++.++..+ ...+.+.++.+..++|+.|+++|++|++
T Consensus 82 ~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~ 161 (281)
T 1ldf_A 82 DKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMG 161 (281)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987543211 1122344567889999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhc----CCC------CCCcceehhh
Q 023370 180 TVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN----NDK------AWDDHWIFWV 249 (283)
Q Consensus 180 ~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~----~~~------~~~~~~vy~v 249 (283)
+++++.|+++.... +.+.|+.||+++.++.++.+++||++|||||||||+++.. ++. +|.++||||+
T Consensus 162 ~il~~~d~~~~~~~---~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~v 238 (281)
T 1ldf_A 162 LILALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLF 238 (281)
T ss_dssp HHHHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHH
T ss_pred HHHHHhccCCCCcc---cchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhH
Confidence 99999887664311 3478999999999999999999999999999999999852 111 2338999999
Q ss_pred hhHHHHHHHHHHHHHHcchh
Q 023370 250 GPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 250 ~p~~Ga~~a~~~y~~~~~~~ 269 (283)
+|++|+++|+++|++++.++
T Consensus 239 gPi~Ga~la~~~y~~l~~~~ 258 (281)
T 1ldf_A 239 GPIVGAIVGAFAYRKLIGRH 258 (281)
T ss_dssp HHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999654
No 12
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=1.5e-50 Score=357.00 Aligned_cols=230 Identities=20% Similarity=0.311 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcC
Q 023370 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 116 (283)
Q Consensus 37 ~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~ 116 (283)
++++|++++||+|||+|+|++++++.+....+ ...+++.+++++|+++++.+++++++||||+|||||+++++.|++
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~---~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 83 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTG---LSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKF 83 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---STTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCC
Confidence 45789999999999999999998776433211 234688899999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCC----CcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCC
Q 023370 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG----ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSAR 192 (283)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~ 192 (283)
+|++++.|+++|++||++|+++++.++++.++..... ........+..++++.|+++|++|+++++++.|+|+...
T Consensus 84 ~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d~~~~~~ 163 (258)
T 3c02_A 84 DLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGK 163 (258)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhCcccCCc
Confidence 9999999999999999999999999998876533211 111223345556999999999999999999887765311
Q ss_pred CCCCCCch-hHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhc---CCCCC----CcceehhhhhHHHHHHHHHHHHH
Q 023370 193 DSHVPVLA-PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN---NDKAW----DDHWIFWVGPFVGALAAAAYHQY 264 (283)
Q Consensus 193 ~~~~~~~~-~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~---~~~~~----~~~~vy~v~p~~Ga~~a~~~y~~ 264 (283)
. ..+. |+.||+++..+.++.+++||++|||||||||+++.+ ++..| .++|+||++|++|+++|+++|++
T Consensus 164 ~---~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~ 240 (258)
T 3c02_A 164 F---HILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDK 240 (258)
T ss_dssp C---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred c---cccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHH
Confidence 1 3477 999999999999999999999999999999999863 23345 67999999999999999999999
Q ss_pred Hcchhhhh
Q 023370 265 ILRAAAIK 272 (283)
Q Consensus 265 ~~~~~~~~ 272 (283)
++.++..+
T Consensus 241 ~~~~~~~~ 248 (258)
T 3c02_A 241 VICPLVDL 248 (258)
T ss_dssp THHHHHHH
T ss_pred HhcccCCC
Confidence 99765443
No 13
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=1.1e-49 Score=349.47 Aligned_cols=225 Identities=32% Similarity=0.446 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCC--------CC-----CCcchhHHHHHHHHHHHHHHHHhcCccccccC
Q 023370 38 SFYRALIAEFVATLLFLYVSVATVIGHK-KQSD--------AC-----GGVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 103 (283)
Q Consensus 38 ~l~~~~~~EfigTf~lvf~~~~~~~~~~-~~~~--------~~-----~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~N 103 (283)
+++|++++||+|||+|+|++++++.... ..++ .. ...+++.+++++|+++++.+++++++||||+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 4689999999999999999998776533 1110 00 11235569999999999999999999999999
Q ss_pred hHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhh-hcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHH
Q 023370 104 PAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYN-SLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF 182 (283)
Q Consensus 104 PavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl 182 (283)
||||+++++.|+++|++++.|+++|++|+++|+.+++.+++++.. ....+.+.+.++.+..++++.|+++|++|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 999999999999999999999999999999999999999987421 1222333444678889999999999999999999
Q ss_pred HhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHH--Hh-cCCCCCCcceehhhhhHHHHHHHH
Q 023370 183 SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV--IY-NNDKAWDDHWIFWVGPFVGALAAA 259 (283)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i--~~-~~~~~~~~~~vy~v~p~~Ga~~a~ 259 (283)
+..++++.. ..+.|+.+|+++.+++++.+++||+++||||||||++ .. +++.+|.+.|+||++|++|+++|+
T Consensus 163 ~~~~~~~~~-----~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa 237 (246)
T 2f2b_A 163 GIAVDERAP-----KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237 (246)
T ss_dssp HHTTSTTSC-----TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHH
T ss_pred EEecCCCCC-----CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHH
Confidence 876554432 3478999999999999999999999999999999999 44 456789999999999999999999
Q ss_pred HHHHHHcc
Q 023370 260 AYHQYILR 267 (283)
Q Consensus 260 ~~y~~~~~ 267 (283)
++|+++++
T Consensus 238 ~~y~~l~~ 245 (246)
T 2f2b_A 238 LTYQYLTS 245 (246)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 99999875
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.55 E-value=1.5e-14 Score=126.43 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHH-----
Q 023370 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL----- 112 (283)
Q Consensus 38 ~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l----- 112 (283)
+.++.++.|+++||+|++.+++.....+.. ....++.+|+.+...++..+++||+|+|||+|+++.+
T Consensus 142 ~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~--------~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~ 213 (246)
T 2f2b_A 142 SYWQAMLAEVVGTFLLMITIMGIAVDERAP--------KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIF 213 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSTTSC--------TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHheeeEEecCCCCC--------CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHc
Confidence 467899999999999999988754321111 1126788899999999999999999999999999999
Q ss_pred hhcCchhhHHHHHHhhhhhhHHHHHHHHHhhh
Q 023370 113 ARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK 144 (283)
Q Consensus 113 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 144 (283)
-++..|.+.++||++|++|+++|+++.+.+.+
T Consensus 214 g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 214 AGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp HCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 23567999999999999999999998877653
No 15
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.53 E-value=1.4e-14 Score=127.51 Aligned_cols=105 Identities=23% Similarity=0.198 Sum_probs=86.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCC
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAW 241 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~ 241 (283)
+..+.++.|+++|++|+++.+........ ........++.+|+++.+.++..+++||+++|||++++..+. ++..|
T Consensus 8 ~~~~~~laEfiGT~~Lv~~g~g~~~~~~~--~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~--g~~~~ 83 (263)
T 2b6o_A 8 SFWRAIFAEFFATLFYVFFGLGASLRWAP--GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVG--SQMSL 83 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCS--SSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHT--TCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHh--cCCCH
Confidence 45678999999999999998876543211 111012468899999999999999999999999999999996 34789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHcchhh
Q 023370 242 DDHWIFWVGPFVGALAAAAYHQYILRAAA 270 (283)
Q Consensus 242 ~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~ 270 (283)
...|+||++|++|+++|+.+++.++.++.
T Consensus 84 ~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~ 112 (263)
T 2b6o_A 84 LRAICYVVAQLLGAVAGAAVLYSVTPPAV 112 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 99999999999999999999999997543
No 16
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=121.91 Aligned_cols=104 Identities=23% Similarity=0.223 Sum_probs=85.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCC
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAW 241 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~ 241 (283)
+..+.++.|+++|++|++..++........ .......++.+|+++.+.++..+.+||+|+|||++++..+. ++..|
T Consensus 10 ~~~r~~laEfiGT~~lv~~g~g~~~~~~~~--~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 85 (266)
T 3d9s_A 10 AFLKAVFAEFLATLIFVFFGLGSALKWPSA--LPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVG--NQISL 85 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCSSS--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT--SSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHh--cCCCH
Confidence 356789999999999999888655332211 11122468899999999999999999999999999999986 34689
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHcchh
Q 023370 242 DDHWIFWVGPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 242 ~~~~vy~v~p~~Ga~~a~~~y~~~~~~~ 269 (283)
...+.|+++|++|+++|+.+.+.++.++
T Consensus 86 ~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~ 113 (266)
T 3d9s_A 86 LRAFFYVAAQLVGAIAGAGILYGVAPLN 113 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999998654
No 17
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=116.87 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=85.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccCCCC--CCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCC
Q 023370 163 KGSALGAEIIGTFVLVYTVFSATDPKRS--ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240 (283)
Q Consensus 163 ~~~~~~~E~~~T~~Lv~~vl~~~~~~~~--~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~ 240 (283)
.+|.++.|+++|++|++..++....... ...........+.+|+++.+.++..+.+||+|+|||.+++..+. ++..
T Consensus 3 ~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~--g~~~ 80 (223)
T 3gd8_A 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKIS 80 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHc--CCCC
Confidence 4688999999999999988764432111 11111123568889999999999999999999999999999886 3578
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHcchhh
Q 023370 241 WDDHWIFWVGPFVGALAAAAYHQYILRAAA 270 (283)
Q Consensus 241 ~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~ 270 (283)
|.+...|+++|++|+++|+.+.+.+++++.
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~ 110 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVTPPSV 110 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999988886654
No 18
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.43 E-value=1.5e-13 Score=120.11 Aligned_cols=104 Identities=27% Similarity=0.247 Sum_probs=82.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcc--CCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCC
Q 023370 161 YNKGSALGAEIIGTFVLVYTVFSATD--PKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNND 238 (283)
Q Consensus 161 ~~~~~~~~~E~~~T~~Lv~~vl~~~~--~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~ 238 (283)
.+..+.++.|+++|++|++..++... ...+ .........++.+|+++.+.+++.+.+||+++|||++++..+. +.
T Consensus 27 ~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~-~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~ 103 (256)
T 3llq_A 27 YVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFP-ELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVA--GR 103 (256)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT-TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHh--cC
Confidence 35678999999999999998775321 1111 1111122457899999999999999999999999999999986 35
Q ss_pred CCCCcceehhhhhHHHHHHHHHHHHHHcc
Q 023370 239 KAWDDHWIFWVGPFVGALAAAAYHQYILR 267 (283)
Q Consensus 239 ~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~ 267 (283)
..|.....|+++|++|+++|+.+.+.++.
T Consensus 104 ~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~ 132 (256)
T 3llq_A 104 FPASSLVPYVIAQVAGAIVAAAALYVIAT 132 (256)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999999999999888874
No 19
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.42 E-value=4.5e-13 Score=119.64 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=85.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCCCCCC--CCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCC
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSATDPKRSARD--SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDK 239 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~--~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~ 239 (283)
+.++.++.|+++|++|++..++.......... ........+.+|+++.+.+++++.+||+|+|||++++..+. +..
T Consensus 11 ~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~--g~~ 88 (301)
T 2zz9_A 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKI 88 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHT--SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHHh--cCC
Confidence 45789999999999999988764432111111 11112468899999999999999999999999999999886 357
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHcchhh
Q 023370 240 AWDDHWIFWVGPFVGALAAAAYHQYILRAAA 270 (283)
Q Consensus 240 ~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~ 270 (283)
.|.....|+++|++|+++|+.+.+.++.++.
T Consensus 89 ~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~ 119 (301)
T 2zz9_A 89 SIAKSVFYITAQCLGAIIGAGILYLVTPPSV 119 (301)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHTTSCSCG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8999999999999999999999999887643
No 20
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.41 E-value=1.8e-13 Score=120.26 Aligned_cols=108 Identities=22% Similarity=0.214 Sum_probs=84.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCC
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAW 241 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~ 241 (283)
+..+.++.|+++|++|++...+........+.........+.+|+++.+.+++.+++||+|+|||++++..+. ++..|
T Consensus 8 ~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 85 (258)
T 3c02_A 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSI--NKFDL 85 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHh--CCCcH
Confidence 4567899999999999997664221100000011122467889999999999999999999999999999886 35789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHcchhhh
Q 023370 242 DDHWIFWVGPFVGALAAAAYHQYILRAAAI 271 (283)
Q Consensus 242 ~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~~ 271 (283)
.+...|+++|++|+++|+.+.+.++.++.+
T Consensus 86 ~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~ 115 (258)
T 3c02_A 86 KKIPVYFFAQLLGAFVGTSTVYGLYHGFIS 115 (258)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence 999999999999999999999999876644
No 21
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.40 E-value=2.5e-13 Score=120.69 Aligned_cols=107 Identities=21% Similarity=0.146 Sum_probs=83.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCC
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAW 241 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~ 241 (283)
+..+.++.|+++|++|++...+.................++.+|+++.+.+++.+.+||+|+|||++++..+. ++..|
T Consensus 6 ~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 83 (281)
T 1ldf_A 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLF--ACFDK 83 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHH--SCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHc--CCCCH
Confidence 4578899999999999997664221100000011122468899999999999999999999999999999987 35789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHcchhh
Q 023370 242 DDHWIFWVGPFVGALAAAAYHQYILRAAA 270 (283)
Q Consensus 242 ~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~ 270 (283)
.....|+++|++|+++|+.+.+.++.++.
T Consensus 84 ~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~ 112 (281)
T 1ldf_A 84 RKVIPFIVSQVAGAFCAAALVYGLYYNLF 112 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999988887653
No 22
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.39 E-value=4.2e-13 Score=118.61 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=83.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcc--CC----CCCCCC-CCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHH
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSATD--PK----RSARDS-HVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 234 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~~--~~----~~~~~~-~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~ 234 (283)
+.++.++.|+++|++|++..++... .. +..... ......++.+|+++.+.++..+.+||+|+|||++++..+.
T Consensus 9 ~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~ 88 (271)
T 1j4n_A 9 LFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLS 88 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHHHHHHHc
Confidence 3567899999999999998765321 10 111110 0122468899999999999999999999999999999986
Q ss_pred hcCCCCCCcceehhhhhHHHHHHHHHHHHHHcchh
Q 023370 235 YNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 235 ~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~ 269 (283)
++..|.....|+++|++|+++|+.+.+.++.+.
T Consensus 89 --g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~ 121 (271)
T 1j4n_A 89 --CQISVLRAIMYIIAQCVGAIVATAILSGITSSL 121 (271)
T ss_dssp --TSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 357899999999999999999999998888543
No 23
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.38 E-value=3.1e-13 Score=121.86 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=84.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCCC--CCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCC
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSATDPKRS--ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDK 239 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~--~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~ 239 (283)
+.++.++.||++|++|++..++....... ...........+.+|+++.+.+++++.+||+++|||++++..+. +..
T Consensus 50 ~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~--G~~ 127 (340)
T 3iyz_A 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKI 127 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHc--CCC
Confidence 45788999999999999987754322111 11111123568899999999999999999999999999999886 357
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHcchh
Q 023370 240 AWDDHWIFWVGPFVGALAAAAYHQYILRAA 269 (283)
Q Consensus 240 ~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~ 269 (283)
.|.....|+++|++|+++|+.+.+.++.++
T Consensus 128 ~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~ 157 (340)
T 3iyz_A 128 SIAKSVFYITAQCLGAIIGAGILYLVTPPS 157 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 899999999999999999999988887654
No 24
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.38 E-value=3.9e-13 Score=116.46 Aligned_cols=104 Identities=23% Similarity=0.172 Sum_probs=82.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccCCC-CCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCC
Q 023370 163 KGSALGAEIIGTFVLVYTVFSATDPKR-SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAW 241 (283)
Q Consensus 163 ~~~~~~~E~~~T~~Lv~~vl~~~~~~~-~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~ 241 (283)
..+.++.|+++|++|++..++....++ ...........++.+|+++.+.++..+++||+|+|||++++..+. ++..|
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 81 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAG--GRFPA 81 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHh--CCCCH
Confidence 467899999999999998765321111 111111122467899999999999999999999999999999886 35789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHcch
Q 023370 242 DDHWIFWVGPFVGALAAAAYHQYILRA 268 (283)
Q Consensus 242 ~~~~vy~v~p~~Ga~~a~~~y~~~~~~ 268 (283)
.+...|+++|++|+++|+.+.+.++.+
T Consensus 82 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 108 (234)
T 2o9g_A 82 KEVVGYVIAQVVGGIVAAALLYLIASG 108 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999888864
No 25
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.36 E-value=9e-13 Score=117.93 Aligned_cols=107 Identities=19% Similarity=0.236 Sum_probs=84.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcc---CCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCC
Q 023370 162 NKGSALGAEIIGTFVLVYTVFSATD---PKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNND 238 (283)
Q Consensus 162 ~~~~~~~~E~~~T~~Lv~~vl~~~~---~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~ 238 (283)
+..+.++.|+++|++|++..++... ..............++.+|+++.+.+++++.+||+++|||++++..+.. .
T Consensus 59 ~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g--~ 136 (304)
T 3cn5_A 59 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR--K 136 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTT--S
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhC--C
Confidence 4568899999999999998764321 1111111111124578899999999999999999999999999998863 4
Q ss_pred CCCCcceehhhhhHHHHHHHHHHHHHHcchhh
Q 023370 239 KAWDDHWIFWVGPFVGALAAAAYHQYILRAAA 270 (283)
Q Consensus 239 ~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~ 270 (283)
..|.....|+++|++|+++|+.+.+.++.++.
T Consensus 137 ~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~ 168 (304)
T 3cn5_A 137 VELLRALVYMIAQCLGAICGVGLVKAFMKGPY 168 (304)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 68999999999999999999999999997653
No 26
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.25 E-value=2.1e-11 Score=107.94 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCc
Q 023370 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (283)
Q Consensus 38 ~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (283)
+..+.++.|+++||+|++.+++....... .....++.+|+.+....+..++.||+.+|||++++..+....-
T Consensus 167 s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~--------~~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~ 238 (279)
T 2w2e_A 167 SRTRGLFLEAFGTAILCLTVLMLAVEKHR--------ATWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSF 238 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSCST--------TGGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCCC--------CcCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccc
Confidence 46788999999999999988765432111 1113567888888888899999999999999999999997654
Q ss_pred hhhHHHHHHhhhhhhHHHHHHHHHhhhhhh
Q 023370 118 LIRAVAYMVAQCLGAICGVGLVKAFMKHEY 147 (283)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~ 147 (283)
+...|+||+++++|+++|+++.+.+...++
T Consensus 239 ~~~~WVy~vgPiiGa~la~~ly~~l~~~~~ 268 (279)
T 2w2e_A 239 PNYHWIYWLGPILGAFLAYSIWQMWKWLNY 268 (279)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 567899999999999999999887765443
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=94.57 E-value=1.5 Score=38.39 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhh--hhhhhcCC-
Q 023370 76 LLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK--HEYNSLGG- 152 (283)
Q Consensus 76 ~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~--~~~~~~~~- 152 (283)
.+..++.+++.+.+.++.-+..-=+ |--.+ ...+.+|.+|.+.+--|.-=++|=++|++++-.+.. ......++
T Consensus 68 ~ll~g~~F~vGL~lVvl~G~ELFTg--n~l~~-~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T 3kcu_A 68 KLVGGICFSLGLILCVVCGADLFTS--TVLIV-VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_dssp HHHHHHHHTHHHHHHHHHTCCCTTT--THHHH-HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccc--chHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchH
Confidence 3445666666666666655553322 42233 345578899988776666666666666655444421 11100000
Q ss_pred -C-----CcccCCCCcchhhHHHHHHHHHHHHHHHHHhccCC
Q 023370 153 -G-----ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPK 188 (283)
Q Consensus 153 -~-----~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~ 188 (283)
+ .....-..+..+.|+-=.+|-++..+.++.....|
T Consensus 145 ~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ak 186 (285)
T 3kcu_A 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGR 186 (285)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 00001234567788888888888888887654433
No 28
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=91.27 E-value=5.3 Score=34.72 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcC-ccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhh--hhhhhcCC
Q 023370 76 LLGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK--HEYNSLGG 152 (283)
Q Consensus 76 ~~~~~~~~g~~~~~~i~~~~~-iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~--~~~~~~~~ 152 (283)
.+..++.+++.+.+.++.-+. .+|--+ .+ ...+.+|.+|.+.+--|.-=++|=++|++++-.+.. ..+.. ..
T Consensus 67 ~ll~g~~F~vGL~lVvl~g~ELFTgn~l---~~-~~~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~-~~ 141 (280)
T 3kly_A 67 KLLGGLAFSLGLILVVITGGELFTSSVL---IL-VAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFME-DG 141 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCTTTTCC---CC-SSSSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGT-TT
T ss_pred HHHHHHHHHHHHHHHHHccccccccchH---HH-HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-Cc
Confidence 345566676666666665555 334333 22 234568889888887777777777777766544431 11110 00
Q ss_pred C--------CcccCCCCcchhhHHHHHHHHHHHHHHHHHhccC
Q 023370 153 G--------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDP 187 (283)
Q Consensus 153 ~--------~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~ 187 (283)
+ .....-..+..+.|+-=.+|-++..+.++.....
T Consensus 142 ~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~a 184 (280)
T 3kly_A 142 GQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSA 184 (280)
T ss_dssp THHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 0000123456778888888888888887765443
No 29
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=90.72 E-value=1.2 Score=38.72 Aligned_cols=185 Identities=10% Similarity=0.079 Sum_probs=90.1
Q ss_pred chhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCC
Q 023370 75 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGA 154 (283)
Q Consensus 75 ~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~ 154 (283)
..+..++.+++.+...++.-+..-=+ |-.......+.+|.+|.+.+--|.-=++|=++|+++.-.+....- ....+.
T Consensus 63 ~~ll~g~~F~~Gl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg-~~~~~~ 139 (268)
T 3tds_E 63 TKIVMGLSFAIALSLVIMTGTELFTG--NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTG-LVDKGP 139 (268)
T ss_dssp HHHHHHHTCTHHHHHHHHHTCCCHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTSSSH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCcH
Confidence 34555666666555555543332211 433333456789999999988887777777777766555442110 000000
Q ss_pred c--------ccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccc
Q 023370 155 N--------TVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPA 226 (283)
Q Consensus 155 ~--------~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA 226 (283)
. ...-..+..+.|+-=.+|-++..+.++.....|... -.-+.+-+.+.+.+..+ ..=...|=
T Consensus 140 ~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~~k~~~-------gKi~~i~~pi~~Fv~~G--fEH~VANm- 209 (268)
T 3tds_E 140 VAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDT-------AKIIMIFLCLFAIITSG--FEHSVANM- 209 (268)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHSCSCHH-------HHHHHHHHHHHHHHHHT--CCCHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCchh-------hHHHHHHHHHHHHHHcc--chHHHHHH-
Confidence 0 000134556778888888888888777544322211 11223323332222222 22112231
Q ss_pred hhhhHHHHhcC--CCCCCcc---eeh-hhhhHHHHH-HHHHHHHHHcchhhhh
Q 023370 227 RSFGAAVIYNN--DKAWDDH---WIF-WVGPFVGAL-AAAAYHQYILRAAAIK 272 (283)
Q Consensus 227 ~~l~~~i~~~~--~~~~~~~---~vy-~v~p~~Ga~-~a~~~y~~~~~~~~~~ 272 (283)
--+...++.+. +..|... +++ .+|.++|+. +-++.|.++++++++.
T Consensus 210 ~~~~~~~~~~~~~~~t~~~~~~nlipvtlGNiiGG~~fvgl~y~~~~~~~~~~ 262 (268)
T 3tds_E 210 TIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEKLNA 262 (268)
T ss_dssp HHHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHCCC---
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 11122222221 2333321 222 368888874 5678888888665443
No 30
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=62.25 E-value=73 Score=27.10 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhh-hhhcCCCC
Q 023370 76 LLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE-YNSLGGGA 154 (283)
Q Consensus 76 ~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~-~~~~~~~~ 154 (283)
.+..++.+++.+...++.-+..-=+ |-.......+.+|.+|.+.+--|.-=++|=++|+++.-.+.... ....+...
T Consensus 58 ~ll~g~~F~vGl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~~ 135 (261)
T 4fc4_A 58 PLVMGATFGIALTLVIIAGSELFTG--HTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDT 135 (261)
T ss_dssp HHHHHHHTTHHHHHHHHTCCCCHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHHcCCccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 3445666665555554443322111 43333345567889999988888777777777776654443321 00000000
Q ss_pred cc---c---CCCCcchhhHHHHHHHHHHHHHHHHHhc
Q 023370 155 NT---V---ASGYNKGSALGAEIIGTFVLVYTVFSAT 185 (283)
Q Consensus 155 ~~---~---~~~~~~~~~~~~E~~~T~~Lv~~vl~~~ 185 (283)
.. . .-..+..+.|+-=.+|-++..+.++...
T Consensus 136 ~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~ 172 (261)
T 4fc4_A 136 SIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMAI 172 (261)
T ss_dssp SHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0 0123456677777788888777776543
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=43.74 E-value=2.8 Score=37.39 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=18.1
Q ss_pred hcCccccccChHHHHHHHHhhc
Q 023370 94 TAGISGGHINPAVTFGLFLARK 115 (283)
Q Consensus 94 ~~~iSGah~NPavTla~~l~g~ 115 (283)
.++-||||++||++++-.+..+
T Consensus 8 ~~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 8 MAGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp ECCSSHHHHHHHHHHHHHHHHT
T ss_pred EcCCCHHHHHHHHHHHHHHHhC
Confidence 3455789999999999999754
Done!