Your job contains 1 sequence.
>023372
MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS
KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF
SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA
EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML
GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023372
(283 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2122794 - symbol:LHCB5 "light harvesting compl... 1111 1.4e-112 1
UNIPROTKB|P12330 - symbol:CAB1R "Chlorophyll a-b binding ... 498 1.2e-47 1
UNIPROTKB|P12331 - symbol:CAB2R "Chlorophyll a-b binding ... 498 1.2e-47 1
TAIR|locus:2019287 - symbol:CAB3 "chlorophyll A/B binding... 489 1.1e-46 1
TAIR|locus:2019372 - symbol:CAB2 "chlorophyll A/B-binding... 489 1.1e-46 1
TAIR|locus:2019322 - symbol:CAB1 "chlorophyll A/B binding... 489 1.1e-46 1
TAIR|locus:2044988 - symbol:LHCB2.2 "photosystem II light... 482 6.2e-46 1
TAIR|locus:2042148 - symbol:LHCB2.1 "photosystem II light... 482 6.2e-46 1
TAIR|locus:2040934 - symbol:LHB1B2 "photosystem II light ... 481 7.9e-46 1
TAIR|locus:2040944 - symbol:LHB1B1 "light-harvesting chlo... 481 7.9e-46 1
TAIR|locus:2089139 - symbol:LHCB2.3 "photosystem II light... 480 1.0e-45 1
TAIR|locus:2162540 - symbol:LHCB3 "light-harvesting chlor... 453 7.3e-43 1
TAIR|locus:2097608 - symbol:LHCB4.2 "light harvesting com... 256 4.2e-30 2
TAIR|locus:2149765 - symbol:LHCB4.1 "light harvesting com... 262 8.6e-30 2
TAIR|locus:2082717 - symbol:LHCA1 "photosystem I light ha... 328 1.3e-29 1
TAIR|locus:2011691 - symbol:AT1G76570 species:3702 "Arabi... 316 2.4e-28 1
UNIPROTKB|Q93WD2 - symbol:Lhcb4 "Chlorophyll a-b binding ... 233 2.8e-27 2
TAIR|locus:2047751 - symbol:LHCB4.3 "light harvesting com... 243 4.5e-27 2
TAIR|locus:2082767 - symbol:LHCA2 "photosystem I light ha... 286 3.6e-25 1
TAIR|locus:2079117 - symbol:LHCA4 "light-harvesting chlor... 274 6.8e-24 1
TAIR|locus:2200868 - symbol:LHCA3 "photosystem I light ha... 267 3.8e-23 1
TAIR|locus:2202150 - symbol:Lhca6 "photosystem I light ha... 252 1.5e-21 1
TAIR|locus:2825741 - symbol:Lhca5 "photosystem I light ha... 230 3.1e-19 1
TAIR|locus:2146544 - symbol:AT5G28450 species:3702 "Arabi... 160 8.6e-12 1
TAIR|locus:2036209 - symbol:LHCB6 "light harvesting compl... 115 0.00014 1
>TAIR|locus:2122794 [details] [associations]
symbol:LHCB5 "light harvesting complex of photosystem II
5" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009533 "chloroplast stromal thylakoid"
evidence=IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS;IMP]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009783 "photosystem II antenna complex"
evidence=IMP] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0010196
"nonphotochemical quenching" evidence=IMP] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0019344 "cysteine biosynthetic
process" evidence=RCA] [GO:0009517 "PSII associated
light-harvesting complex II" evidence=IDA] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0009637 GO:GO:0010218 GO:GO:0010114
GO:GO:0018298 GO:GO:0010287 GO:GO:0015979 EMBL:AL049488
EMBL:AL161517 GO:GO:0009522 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
EMBL:AF134129 EMBL:AF326900 EMBL:AF339718 EMBL:AF424597
EMBL:AF380631 EMBL:AY054126 EMBL:AY087939 IPI:IPI00535216
PIR:T04049 RefSeq:NP_192772.1 UniGene:At.23060
ProteinModelPortal:Q9XF89 SMR:Q9XF89 DIP:DIP-59004N STRING:Q9XF89
PaxDb:Q9XF89 PRIDE:Q9XF89 EnsemblPlants:AT4G10340.1 GeneID:826626
KEGG:ath:AT4G10340 TAIR:At4g10340 eggNOG:NOG321165
InParanoid:Q9XF89 KO:K08916 OMA:EGPVENL PhylomeDB:Q9XF89
ProtClustDB:CLSN2685679 Genevestigator:Q9XF89 GermOnline:AT4G10340
GO:GO:0009783 GO:GO:0009517 GO:GO:0010196 Uniprot:Q9XF89
Length = 280
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 216/280 (77%), Positives = 233/280 (83%)
Query: 14 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELA 73
+G EMLG PLN + R+SAP AS+PSTFK VALF ++ELA
Sbjct: 4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELA 60
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
KWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+K W
Sbjct: 61 KWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARW 120
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 183
AMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+V
Sbjct: 121 AMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 180
Query: 184 LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
L+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF
Sbjct: 181 LLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFF 240
Query: 244 LQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 241 IQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>UNIPROTKB|P12330 [details] [associations]
symbol:CAB1R "Chlorophyll a-b binding protein 1,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009535 "chloroplast thylakoid membrane" evidence=ISS]
[GO:0015979 "photosynthesis" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 GO:GO:0005739 GO:GO:0046872
GO:GO:0048046 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 KO:K08912 ProtClustDB:PLN00025 EMBL:X13908
EMBL:D00641 EMBL:AP005313 EMBL:AP005700 EMBL:AK060851 PIR:A44956
PIR:S03705 RefSeq:NP_001062939.1 UniGene:Os.7941
ProteinModelPortal:P12330 SMR:P12330 STRING:P12330
EnsemblPlants:LOC_Os09g17740.1 GeneID:4346803
KEGG:dosa:Os09t0346500-04 KEGG:osa:4346803 Gramene:P12330
eggNOG:NOG322441 OMA:GEARITM Uniprot:P12330
Length = 265
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 110/209 (52%), Positives = 135/209 (64%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I+ + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 164
Query: 182 IVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>UNIPROTKB|P12331 [details] [associations]
symbol:CAB2R "Chlorophyll a-b binding protein 2,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009535 "chloroplast thylakoid membrane" evidence=ISS]
[GO:0015979 "photosynthesis" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 GO:GO:0005739 GO:GO:0046872
GO:GO:0048046 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 KO:K08912
OMA:SSGIEFY ProtClustDB:PLN00025 eggNOG:NOG322441 EMBL:X13909
EMBL:AP003278 EMBL:AK121563 PIR:S03706 RefSeq:NP_001043493.1
UniGene:Os.79136 ProteinModelPortal:P12331 SMR:P12331 STRING:P12331
EnsemblPlants:LOC_Os01g41710.1 GeneID:4324599
KEGG:dosa:Os01t0600900-02 KEGG:dosa:Os03t0165375-00
KEGG:dosa:Os06t0484450-00 KEGG:osa:4324599 Gramene:P12331
Uniprot:P12331
Length = 261
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 110/209 (52%), Positives = 135/209 (64%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 45 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 101
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I+ + A+ A +
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 160
Query: 182 IVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 161 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 220
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 221 FGFFVQAIVTGKGPLENLADHLADPVNNN 249
>TAIR|locus:2019287 [details] [associations]
symbol:CAB3 "chlorophyll A/B binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GO:GO:0005739 GO:GO:0046872
GO:GO:0018298 GO:GO:0009535 UniGene:At.49175 GO:GO:0010287
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
IPI:IPI00527705 RefSeq:NP_564339.1 RefSeq:NP_564340.1
UniGene:At.10812 UniGene:At.24351 UniGene:At.27031 UniGene:At.32199
UniGene:At.43708 UniGene:At.66422 UniGene:At.70617 UniGene:At.71449
UniGene:At.71528 UniGene:At.71547 DNASU:839869 DNASU:839870
EnsemblPlants:AT1G29910.1 EnsemblPlants:AT1G29920.1 GeneID:839869
GeneID:839870 KEGG:ath:AT1G29910 KEGG:ath:AT1G29920 KO:K08912
EMBL:X03908 EMBL:AY065165 EMBL:AY114594 ProteinModelPortal:Q8VZ87
SMR:Q8VZ87 IntAct:Q8VZ87 STRING:Q8VZ87 PaxDb:Q8VZ87 PRIDE:Q8VZ87
TAIR:At1g29910 eggNOG:NOG327854 PhylomeDB:Q8VZ87
Genevestigator:Q8VZ87 GermOnline:AT1G29910 Uniprot:Q8VZ87
Length = 267
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 107/210 (50%), Positives = 134/210 (63%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L G E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGSDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G ++ + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 IVLVGGAEYYRIT-NGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>TAIR|locus:2019372 [details] [associations]
symbol:CAB2 "chlorophyll A/B-binding protein 2"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009750
"response to fructose stimulus" evidence=IEP] [GO:0005794 "Golgi
apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
GO:GO:0048046 GO:GO:0009750 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 UniGene:At.49175
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:X03907
EMBL:AY052237 EMBL:AY054198 EMBL:AY060500 EMBL:AY062814
EMBL:AY081572 EMBL:AY128345 EMBL:BT000726 EMBL:AY086905
IPI:IPI00527705 PIR:A29280 RefSeq:NP_564339.1 RefSeq:NP_564340.1
UniGene:At.10812 UniGene:At.24351 UniGene:At.27031 UniGene:At.32199
UniGene:At.43708 UniGene:At.66422 UniGene:At.70617 UniGene:At.71449
UniGene:At.71528 UniGene:At.71547 ProteinModelPortal:P0CJ48
SMR:P0CJ48 IntAct:P0CJ48 PRIDE:P0CJ48 DNASU:839869 DNASU:839870
EnsemblPlants:AT1G29910.1 EnsemblPlants:AT1G29920.1 GeneID:839869
GeneID:839870 KEGG:ath:AT1G29910 KEGG:ath:AT1G29920 TAIR:At1g29920
HOGENOM:HOG000238032 KO:K08912 PhylomeDB:P0CJ48 Uniprot:P0CJ48
Length = 267
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 107/210 (50%), Positives = 134/210 (63%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L G E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGSDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G ++ + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 IVLVGGAEYYRIT-NGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>TAIR|locus:2019322 [details] [associations]
symbol:CAB1 "chlorophyll A/B binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS;TAS] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0015979
"photosynthesis" evidence=ISS] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
UniGene:At.23809 GO:GO:0018298 GO:GO:0009535 UniGene:At.49175
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
UniGene:At.10812 UniGene:At.24351 UniGene:At.32199 UniGene:At.43708
UniGene:At.66422 UniGene:At.71449 UniGene:At.71528
HOGENOM:HOG000238032 KO:K08912 eggNOG:NOG327854
GermOnline:AT1G29910 EMBL:X03909 EMBL:AF428359 EMBL:AY045673
EMBL:AY050935 EMBL:AY058180 EMBL:AY091169 EMBL:X15221 EMBL:X15222
EMBL:Z17799 IPI:IPI00547631 PIR:A86423 RefSeq:NP_174286.1
UniGene:At.19140 UniGene:At.48174 UniGene:At.71551
ProteinModelPortal:P04778 SMR:P04778 IntAct:P04778 STRING:P04778
PaxDb:P04778 PRIDE:P04778 ProMEX:P04778 EnsemblPlants:AT1G29930.1
GeneID:839871 KEGG:ath:AT1G29930 TAIR:At1g29930 InParanoid:P04778
OMA:SSGIEFY PhylomeDB:P04778 ProtClustDB:PLN00025
Genevestigator:P04778 Uniprot:P04778
Length = 267
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 107/210 (50%), Positives = 134/210 (63%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L G E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGSDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G ++ + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 IVLVGGAEYYRIT-NGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>TAIR|locus:2044988 [details] [associations]
symbol:LHCB2.2 "photosystem II light harvesting complex
gene 2.2" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] InterPro:IPR001344
Pfam:PF00504 GO:GO:0005774 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009941 GO:GO:0009535 GO:GO:0010287 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
ProtClustDB:PLN00025 EMBL:AC007211 EMBL:AF134123 EMBL:AY054218
EMBL:AY062563 EMBL:AY066036 EMBL:AY093372 IPI:IPI00542481
PIR:T52324 RefSeq:NP_178582.1 UniGene:At.48420 UniGene:At.63397
UniGene:At.72525 ProteinModelPortal:Q9S7J7 SMR:Q9S7J7 IntAct:Q9S7J7
STRING:Q9S7J7 PaxDb:Q9S7J7 PRIDE:Q9S7J7 ProMEX:Q9S7J7
EnsemblPlants:AT2G05070.1 GeneID:815055 KEGG:ath:AT2G05070
TAIR:At2g05070 eggNOG:NOG312402 InParanoid:Q9S7J7 KO:K08913
OMA:AFATKYT PhylomeDB:Q9S7J7 ArrayExpress:Q9S7J7
Genevestigator:Q9S7J7 Uniprot:Q9S7J7
Length = 265
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 109/209 (52%), Positives = 133/209 (63%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRPKYL--GPFSENT-PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-N-IPINLVFAVIA-E 181
MLGA G PE +K G G EAVWFK G+ + L+Y G N I + A+ A +
Sbjct: 106 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLFDHLADPVANN 253
>TAIR|locus:2042148 [details] [associations]
symbol:LHCB2.1 "photosystem II light harvesting complex
gene 2.1" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0009535 GO:GO:0010287
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.48420
UniGene:At.63397 KO:K08913 EMBL:AC007443 EMBL:AY052275
EMBL:AY052348 EMBL:BT001933 IPI:IPI00535929 RefSeq:NP_178585.1
ProteinModelPortal:Q9SHR7 SMR:Q9SHR7 STRING:Q9SHR7 PRIDE:Q9SHR7
EnsemblPlants:AT2G05100.1 GeneID:815058 KEGG:ath:AT2G05100
TAIR:At2g05100 InParanoid:Q9SHR7 OMA:MAASAIQ PhylomeDB:Q9SHR7
ArrayExpress:Q9SHR7 Genevestigator:Q9SHR7 Uniprot:Q9SHR7
Length = 265
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 109/209 (52%), Positives = 133/209 (63%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRPKYL--GPFSENT-PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-N-IPINLVFAVIA-E 181
MLGA G PE +K G G EAVWFK G+ + L+Y G N I + A+ A +
Sbjct: 106 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLFDHLADPVANN 253
>TAIR|locus:2040934 [details] [associations]
symbol:LHB1B2 "photosystem II light harvesting complex
gene B1B2" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0009769 "photosynthesis, light
harvesting in photosystem II" evidence=TAS] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016168 "chlorophyll binding"
evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0042651 "thylakoid membrane" evidence=TAS]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0015979 "photosynthesis" evidence=ISS] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 UniGene:At.10812 UniGene:At.24351 UniGene:At.32199
UniGene:At.66422 UniGene:At.71449 UniGene:At.71528
HOGENOM:HOG000238032 KO:K08912 ProtClustDB:PLN00025
UniGene:At.23647 UniGene:At.27457 UniGene:At.24064 UniGene:At.24888
EMBL:AF372886 EMBL:AY039561 EMBL:AY045806 EMBL:AF428397
EMBL:AF419548 EMBL:AF419587 EMBL:AY065125 EMBL:AY079101
EMBL:AY079110 EMBL:AY081587 EMBL:AY142513 EMBL:AK229627 EMBL:X64460
IPI:IPI00530785 PIR:S23546 RefSeq:NP_565786.1 UniGene:At.71003
UniGene:At.71384 ProteinModelPortal:Q39141 SMR:Q39141 IntAct:Q39141
STRING:Q39141 PRIDE:Q39141 EnsemblPlants:AT2G34420.1 GeneID:818005
KEGG:ath:AT2G34420 TAIR:At2g34420 InParanoid:Q39141
PhylomeDB:Q39141 ArrayExpress:Q39141 Genevestigator:Q39141
Uniprot:Q39141
Length = 265
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 106/210 (50%), Positives = 132/210 (62%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L G E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGSDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G ++ + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ L ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 164 VILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 MFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>TAIR|locus:2040944 [details] [associations]
symbol:LHB1B1 "light-harvesting chlorophyll-protein
complex II subunit B1" species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0009769
"photosynthesis, light harvesting in photosystem II" evidence=TAS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0042651 "thylakoid membrane" evidence=TAS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0010287 "plastoglobule"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 UniGene:At.10812 UniGene:At.24351 UniGene:At.66422
UniGene:At.71449 UniGene:At.71528 HOGENOM:HOG000238032 KO:K08912
ProtClustDB:PLN00025 UniGene:At.22980 UniGene:At.71384
EMBL:AF326864 EMBL:AF339687 EMBL:AY120776 EMBL:BT002103 EMBL:X64459
IPI:IPI00535697 PIR:S25677 RefSeq:NP_565787.1 UniGene:At.67299
UniGene:At.71696 ProteinModelPortal:Q39142 SMR:Q39142 STRING:Q39142
PRIDE:Q39142 EnsemblPlants:AT2G34430.1 GeneID:818006
KEGG:ath:AT2G34430 TAIR:At2g34430 InParanoid:Q39142 OMA:RITMRKA
PhylomeDB:Q39142 ArrayExpress:Q39142 Genevestigator:Q39142
Uniprot:Q39142
Length = 266
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 106/210 (50%), Positives = 132/210 (62%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L G E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGSDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G ++ + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 164
Query: 182 IVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ L ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 165 VILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 MFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>TAIR|locus:2089139 [details] [associations]
symbol:LHCB2.3 "photosystem II light harvesting complex
gene 2.3" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009637
"response to blue light" evidence=IEP;RCA] [GO:0010114 "response to
red light" evidence=IEP;RCA] [GO:0010218 "response to far red
light" evidence=IEP;RCA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002686 GO:GO:0009941
GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0009535
EMBL:AB018114 GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.63397
KO:K08913 EMBL:AF134125 EMBL:AF370557 EMBL:BT006298 IPI:IPI00549108
PIR:T52322 RefSeq:NP_189406.1 UniGene:At.71997 UniGene:At.8025
ProteinModelPortal:Q9XF87 SMR:Q9XF87 STRING:Q9XF87 PRIDE:Q9XF87
EnsemblPlants:AT3G27690.1 GeneID:822391 KEGG:ath:AT3G27690
TAIR:At3g27690 InParanoid:Q9XF87 OMA:QHSSFAG PhylomeDB:Q9XF87
Genevestigator:Q9XF87 Uniprot:Q9XF87
Length = 266
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 108/209 (51%), Positives = 133/209 (63%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 50 WYGPDRPKYL--GPFSENT-PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-N-IPINLVFAVIA-E 181
MLGA G PE +K G G EAVWFK G+ + L+Y G N I + A+ A +
Sbjct: 107 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 165
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+M
Sbjct: 166 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHIADPVANN 254
>TAIR|locus:2162540 [details] [associations]
symbol:LHCB3 "light-harvesting chlorophyll B-binding
protein 3" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS;IMP] [GO:0016020 "membrane" evidence=IEA] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0005198 "structural
molecule activity" evidence=IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002688 GO:GO:0005198
EMBL:AB010695 GO:GO:0009535 UniGene:At.49175 GO:GO:0015979
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
UniGene:At.10812 UniGene:At.32199 UniGene:At.66422
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.70236
UniGene:At.21173 EMBL:AF134126 EMBL:AF143691 EMBL:AF361858
EMBL:AF372917 EMBL:AY057735 IPI:IPI00532626 PIR:T52318
RefSeq:NP_200238.1 ProteinModelPortal:Q9S7M0 SMR:Q9S7M0
STRING:Q9S7M0 PRIDE:Q9S7M0 EnsemblPlants:AT5G54270.1 GeneID:835515
KEGG:ath:AT5G54270 TAIR:At5g54270 InParanoid:Q9S7M0 KO:K08914
OMA:ADDPVTF PhylomeDB:Q9S7M0 Genevestigator:Q9S7M0 Uniprot:Q9S7M0
Length = 265
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 107/211 (50%), Positives = 131/211 (62%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 47 WYGPDRVKYL--GPFS-VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-N-IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK G+ + L+Y G N + + AV+ +
Sbjct: 104 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 163
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 164 VILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 222
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 223 SMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>TAIR|locus:2097608 [details] [associations]
symbol:LHCB4.2 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009637 "response to blue light" evidence=IEP;RCA] [GO:0010114
"response to red light" evidence=IEP;RCA] [GO:0010218 "response to
far red light" evidence=IEP;RCA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010155 "regulation of proton transport"
evidence=RCA] [GO:0015979 "photosynthesis" evidence=RCA]
[GO:0019344 "cysteine biosynthetic process" evidence=RCA]
[GO:0019684 "photosynthesis, light reaction" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 GO:GO:0016021 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0018298 EMBL:AC010871
GO:GO:0009535 HOGENOM:HOG000238033 GO:GO:0009522 GO:GO:0009523
GO:GO:0016168 GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 KO:K08915
ProtClustDB:PLN00187 EMBL:AF134127 EMBL:AY065140 EMBL:AY081608
IPI:IPI00521901 IPI:IPI00542269 PIR:T52317 RefSeq:NP_187506.1
RefSeq:NP_850545.1 UniGene:At.21828 UniGene:At.22485
UniGene:At.6984 ProteinModelPortal:Q9XF88 SMR:Q9XF88 STRING:Q9XF88
PaxDb:Q9XF88 PRIDE:Q9XF88 ProMEX:Q9XF88 EnsemblPlants:AT3G08940.2
GeneID:820043 KEGG:ath:AT3G08940 TAIR:At3g08940 eggNOG:NOG330021
InParanoid:Q9XF88 OMA:TRFTAWF PhylomeDB:Q9XF88
Genevestigator:Q9XF88 GermOnline:AT3G08940 Uniprot:Q9XF88
Length = 287
Score = 256 (95.2 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 62/157 (39%), Positives = 89/157 (56%)
Query: 122 KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA 180
+WAML G I E G W G + L+DG++ Y G+ +P ++ +
Sbjct: 142 RWAMLATLGAITVEWLT--GVT------WQDAGKVELVDGSS--YLGQPLPFSISTLIWI 191
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
E++++G E+ R LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM
Sbjct: 192 EVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGF 250
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 251 LGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287
Score = 92 (37.4 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
AK DR ++ P G ++ PEYL G + GDYG+DPFGL K P ++
Sbjct: 45 AKTVISDRPLWFP-G----AKSPEYLDGSLVGDYGFDPFGLGK-PAEY 86
>TAIR|locus:2149765 [details] [associations]
symbol:LHCB4.1 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0019684 "photosynthesis, light
reaction" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0018298
GO:GO:0009535 GO:GO:0010287 HOGENOM:HOG000238033 GO:GO:0009522
GO:GO:0009523 GO:GO:0016168 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 eggNOG:NOG319330 KO:K08915 EMBL:X71878
EMBL:AL161946 EMBL:AF370474 EMBL:AY048262 EMBL:AY048300
EMBL:AY057641 EMBL:AY059861 EMBL:AY081680 EMBL:AY092980
EMBL:AY133566 EMBL:BT000363 IPI:IPI00542715 PIR:S33443
RefSeq:NP_195773.1 UniGene:At.23015 UniGene:At.23659
UniGene:At.23691 UniGene:At.24017 UniGene:At.75201
ProteinModelPortal:Q07473 SMR:Q07473 IntAct:Q07473 STRING:Q07473
PaxDb:Q07473 PRIDE:Q07473 EnsemblPlants:AT5G01530.1 GeneID:830325
KEGG:ath:AT5G01530 TAIR:At5g01530 InParanoid:Q07473 OMA:PLHTTIF
PhylomeDB:Q07473 ProtClustDB:PLN00187 Genevestigator:Q07473
GermOnline:AT5G01530 Uniprot:Q07473
Length = 290
Score = 262 (97.3 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 62/157 (39%), Positives = 91/157 (57%)
Query: 122 KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA 180
+WAML G + E G W G + L+DG++ Y G+ +P ++ +
Sbjct: 145 RWAMLATLGALSVEWLT--GVT------WQDAGKVELVDGSS--YLGQPLPFSISTLIWI 194
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
E++++G E+ R LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A
Sbjct: 195 EVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAF 253
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 254 LGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
Score = 83 (34.3 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
DR ++ P G + P++L G + GDYG+DPFGL K P ++
Sbjct: 54 DRPLWYP-GAIS----PDWLDGSLVGDYGFDPFGLGK-PAEY 89
>TAIR|locus:2082717 [details] [associations]
symbol:LHCA1 "photosystem I light harvesting complex gene
1" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009768 "photosynthesis, light harvesting in photosystem I"
evidence=IMP] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL049655
GO:GO:0046872 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
HOGENOM:HOG000238033 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:M85150 EMBL:X56062
EMBL:AF324692 EMBL:AF325016 EMBL:AF326866 EMBL:AF339688
EMBL:AF361847 EMBL:AY070473 EMBL:AY094437 EMBL:BT000852
EMBL:AK317555 IPI:IPI00516813 PIR:S25435 RefSeq:NP_191049.1
UniGene:At.23982 UniGene:At.67867 PDB:2O01 PDB:2WSC PDB:2WSE
PDB:2WSF PDBsum:2O01 PDBsum:2WSC PDBsum:2WSE PDBsum:2WSF
ProteinModelPortal:Q01667 SMR:Q01667 DIP:DIP-59003N STRING:Q01667
PaxDb:Q01667 PRIDE:Q01667 ProMEX:Q01667 EnsemblPlants:AT3G54890.1
GeneID:824654 KEGG:ath:AT3G54890 TAIR:At3g54890 eggNOG:NOG263751
InParanoid:Q01667 KO:K08907 OMA:LAIEFLA PhylomeDB:Q01667
ProtClustDB:PLN00099 EvolutionaryTrace:Q01667 Genevestigator:Q01667
GO:GO:0009768 Uniprot:Q01667
Length = 241
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 78/192 (40%), Positives = 105/192 (54%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP GL + P + + WAML G ++PEA +G N
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YG-NW 112
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKL 203
W L G Y G +P + ++A E + + E+ R D E K
Sbjct: 113 VKAQEW-----AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKK 166
Query: 204 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ--AYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF +Q AY G GP+ENLA HL
Sbjct: 167 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAY-PGTGPLENLATHL 225
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ ++
Sbjct: 226 ADPWHNNIGDIV 237
>TAIR|locus:2011691 [details] [associations]
symbol:AT1G76570 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009637 "response to
blue light" evidence=IEP] [GO:0010218 "response to far red light"
evidence=IEP] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] [GO:0015996 "chlorophyll
catabolic process" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0016020
GO:GO:0009637 GO:GO:0010218 EMBL:AC015450 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
IPI:IPI00528080 PIR:G96793 RefSeq:NP_177783.1 UniGene:At.34640
ProteinModelPortal:Q9C9K1 SMR:Q9C9K1 PaxDb:Q9C9K1 PRIDE:Q9C9K1
EnsemblPlants:AT1G76570.1 GeneID:843990 KEGG:ath:AT1G76570
TAIR:At1g76570 eggNOG:NOG237807 InParanoid:Q9C9K1 KO:K14172
OMA:DYGFDIA PhylomeDB:Q9C9K1 ProtClustDB:PLN00171
Genevestigator:Q9C9K1 Uniprot:Q9C9K1
Length = 327
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 73/167 (43%), Positives = 99/167 (59%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLV 175
++WAML A G +IPE F+ G E VW++ G L G TL Y G + + ++
Sbjct: 159 ARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVI 218
Query: 176 FAVIAEIVLVGGAEYYRITN-------GLDLEDKL-HPGGP-FDPLGLAKDPDQFALLKV 226
I +++L+ G EY R G+ L + +PGG FDPL L++DP F LKV
Sbjct: 219 VIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKV 278
Query: 227 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
KEIKNGRLAM A LGF+ QA TG+GPV+NL H+SDP NNL+ ++
Sbjct: 279 KEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAML 325
Score = 194 (73.4 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 57/155 (36%), Positives = 77/155 (49%)
Query: 73 AKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
+KWYG +R R F P + P YLTGE+PGDYG+D GL K F K
Sbjct: 104 SKWYGKERPRWFGPIPY----DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHA 159
Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVF 176
WAML A G +IPE F+ G E VW++ G L G TL Y G + + ++
Sbjct: 160 RWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIV 219
Query: 177 AVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDP 211
I +++L+ G EY R G++ L P G + P
Sbjct: 220 IAICQVLLMVGPEYARYC-GIEA---LEPLGIYLP 250
>UNIPROTKB|Q93WD2 [details] [associations]
symbol:Lhcb4 "Chlorophyll a-b binding protein CP29"
species:3055 "Chlamydomonas reinhardtii" [GO:0009503 "thylakoid
light-harvesting complex" evidence=IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=NAS] [GO:0016168
"chlorophyll binding" evidence=NAS] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 GO:GO:0046872 GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0018298 GO:GO:0010287
GO:GO:0009522 GO:GO:0009523 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:AB051207 EMBL:AB051211
EMBL:AY171230 RefSeq:XP_001697193.1 UniGene:Cre.4370
ProteinModelPortal:Q93WD2 DIP:DIP-48401N STRING:Q93WD2 PRIDE:Q93WD2
GeneID:5722671 KEGG:cre:CHLREDRAFT_184810 eggNOG:NOG319330
KO:K08915 OMA:TTLIWIE ProtClustDB:CLSN2922608
BioCyc:MetaCyc:CHLREDRAFT_184810-MONOMER GO:GO:0009503
Uniprot:Q93WD2
Length = 280
Score = 233 (87.1 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 55/139 (39%), Positives = 83/139 (59%)
Query: 122 KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 181
+WAML G ++ EA G + W + G + LDG +Y G ++P ++ + E
Sbjct: 142 RWAMLACLGALVAEATT--GVS------WVEAGKVELDG--ASYAGLSLPFSITQLIWIE 191
Query: 182 IVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLAMFAML 240
++LVGGAE+YR + + E + +PGG FDPL LA + ++ A LK EIK+ RLAM +
Sbjct: 192 VILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFF 250
Query: 241 GFFLQAYVTGEGPVENLAK 259
G+ +QA TGEG + +LAK
Sbjct: 251 GYGVQALSTGEGALGSLAK 269
Score = 88 (36.0 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF 120
PE+L G +PGD G+DP GLSK P +F
Sbjct: 60 PEWLDGSLPGDRGFDPLGLSK-PSEF 84
>TAIR|locus:2047751 [details] [associations]
symbol:LHCB4.3 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009637
"response to blue light" evidence=IEP;RCA] [GO:0010114 "response to
red light" evidence=IEP;RCA] [GO:0010218 "response to far red
light" evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 GO:GO:0016021 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 HOGENOM:HOG000238033
GO:GO:0009522 GO:GO:0009523 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 eggNOG:NOG319330 KO:K08915
OMA:TTLIWIE ProtClustDB:PLN00187 EMBL:AF134128 EMBL:AY070392
EMBL:AY096735 EMBL:AY088398 IPI:IPI00538445 PIR:T52316
RefSeq:NP_181539.1 UniGene:At.24469 ProteinModelPortal:Q9S7W1
SMR:Q9S7W1 PaxDb:Q9S7W1 PRIDE:Q9S7W1 EnsemblPlants:AT2G40100.1
GeneID:818599 KEGG:ath:AT2G40100 TAIR:At2g40100 InParanoid:Q9S7W1
PhylomeDB:Q9S7W1 Genevestigator:Q9S7W1 GermOnline:AT2G40100
Uniprot:Q9S7W1
Length = 276
Score = 243 (90.6 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 59/138 (42%), Positives = 82/138 (59%)
Query: 122 KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA 180
+WAMLG G I EA W G + L++G++ Y G+ +P +L +
Sbjct: 146 RWAMLGTLGAIAVEALTGIA--------WQDAGKVELVEGSS--YLGQPLPFSLTTLIWI 195
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+++VG E+ R + LD E +++PGG FDPLGLA DP++ LK+ EIK+ RLAM A L
Sbjct: 196 EVLVVGYIEFQR-NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFL 254
Query: 241 GFFLQAYVTGEGPVENLA 258
F LQA TG+GPV LA
Sbjct: 255 IFALQAAFTGKGPVSFLA 272
Score = 76 (31.8 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKW 123
PE+L G + GD G+DPFGL K P ++ ++
Sbjct: 66 PEWLDGSMIGDRGFDPFGLGK-PAEYLQY 93
>TAIR|locus:2082767 [details] [associations]
symbol:LHCA2 "photosystem I light harvesting complex gene
2" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0009768 "photosynthesis, light harvesting in
photosystem I" evidence=TAS] [GO:0009782 "photosystem I antenna
complex" evidence=TAS] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] InterPro:IPR001344
Pfam:PF00504 EMBL:CP002686 GO:GO:0009535 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
TCDB:5.B.4.1.1 UniGene:At.46743 UniGene:At.55066 KO:K08908
EMBL:AF134120 EMBL:AY054670 EMBL:AY065429 EMBL:AY072483
EMBL:BT002070 IPI:IPI00543126 PIR:T50550 RefSeq:NP_191706.2
ProteinModelPortal:Q9SYW8 SMR:Q9SYW8 STRING:Q9SYW8 PRIDE:Q9SYW8
EnsemblPlants:AT3G61470.1 GeneID:825320 KEGG:ath:AT3G61470
TAIR:At3g61470 InParanoid:Q9SYW8 OMA:SWYTAGE PhylomeDB:Q9SYW8
ProtClustDB:CLSN2696878 ArrayExpress:Q9SYW8 Genevestigator:Q9SYW8
Uniprot:Q9SYW8
Length = 257
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 82/204 (40%), Positives = 103/204 (50%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLG 127
PDR I+ P G S PE+L G +PGD+G+DP GLS PD +WAMLG
Sbjct: 50 PDRPIWFP-G----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGA--LLLDGNTLNYFGKNIPINLVFAVI-AEIVL 184
AAG IPE K G P W+ G D TL + + I I A+I+
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDKTTL-FVVELILIGWAEGRRWADIIK 161
Query: 185 VGGAEYYRI--TNGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAML 240
G + N L D +PGG FDPLG P + L+ KEIKNGRLAM A++
Sbjct: 162 PGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 221
Query: 241 GFFLQAYVTGEGPVENLAKHLSDP 264
G + Q TG GP++NL HL+DP
Sbjct: 222 GAWFQHIYTGTGPIDNLFAHLADP 245
>TAIR|locus:2079117 [details] [associations]
symbol:LHCA4 "light-harvesting chlorophyll-protein
complex I subunit A4" species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016168 "chlorophyll binding"
evidence=ISS;NAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0030003 "cellular
cation homeostasis" evidence=RCA] [GO:0070838 "divalent metal ion
transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0009941 GO:GO:0080167 GO:GO:0018298 GO:GO:0009535
GO:GO:0010287 EMBL:AL132955 EMBL:M63931 EMBL:AY093080 EMBL:BT000093
EMBL:AY086470 IPI:IPI00523187 PIR:T45707 RefSeq:NP_190331.3
UniGene:At.21346 UniGene:At.27524 UniGene:At.35504 UniGene:At.35803
UniGene:At.66361 UniGene:At.68076 UniGene:At.71101
ProteinModelPortal:P27521 SMR:P27521 STRING:P27521 PaxDb:P27521
PRIDE:P27521 EnsemblPlants:AT3G47470.1 GeneID:823901
KEGG:ath:AT3G47470 TAIR:At3g47470 eggNOG:NOG249845
HOGENOM:HOG000238033 InParanoid:P27521 KO:K08910 OMA:WFVQAEL
PhylomeDB:P27521 ProtClustDB:PLN00101 Genevestigator:P27521
GermOnline:AT3G47470 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
Uniprot:P27521
Length = 251
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 75/191 (39%), Positives = 101/191 (52%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P+YLTG + GD G+DP GL++ P++ +WAMLG AG ++PE F K G
Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 145 GPEAVWFKTGA--LLLDGNTLNYFGKNIPINLV-FAVIAEIVLVGGAEYYRITNGLDLE- 200
PE W+ G +TL + + I + V +I G I L
Sbjct: 124 VPE--WYDAGKEQYFASSSTL-FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180
Query: 201 -DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 259
+ +PGG F+PL A P Q A K KE+ NGRLAM A LGF +Q VTG+GP ENL +
Sbjct: 181 GEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQ 236
Query: 260 HLSDPFANNLL 270
HLSDP+ N ++
Sbjct: 237 HLSDPWHNTIV 247
>TAIR|locus:2200868 [details] [associations]
symbol:LHCA3 "photosystem I light harvesting complex gene
3" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684
GO:GO:0009535 GO:GO:0010287 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 PDB:2O01 PDBsum:2O01 UniGene:At.2877 EMBL:AC005850
UniGene:At.21403 EMBL:AY059879 EMBL:AY093370 IPI:IPI00532189
PIR:E96640 RefSeq:NP_001185280.1 RefSeq:NP_176347.1
UniGene:At.20472 UniGene:At.71924 UniGene:At.71944
ProteinModelPortal:Q9SY97 SMR:Q9SY97 STRING:Q9SY97 PRIDE:Q9SY97
ProMEX:Q9SY97 EnsemblPlants:AT1G61520.1 EnsemblPlants:AT1G61520.3
GeneID:842446 KEGG:ath:AT1G61520 TAIR:At1g61520 InParanoid:Q9SY97
KO:K08909 OMA:LMGFAEH PhylomeDB:Q9SY97 ProtClustDB:PLN00048
ArrayExpress:Q9SY97 Genevestigator:Q9SY97 Uniprot:Q9SY97
Length = 273
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 88/264 (33%), Positives = 125/264 (47%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLP 85
VSS++ +S A KPVA W+ + +
Sbjct: 7 VSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYL 66
Query: 86 EGLL--DRSEIPEYLTGEVPGDYGY-DPFGLSKKPDDFSKWAMLGAAGFIIPEAFNKFGA 142
+G L D P L+ + G G+ +P L+ ++AMLGAAG I PE K G
Sbjct: 67 DGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGL 125
Query: 143 NCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLV------FAV---IAEIVLVG--GAEY 190
A+ WF+TG + G T Y+ N + ++ FA + + G G +Y
Sbjct: 126 IPAETALPWFQTGVIPPAG-TYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQY 184
Query: 191 YR-ITNGL-DLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 247
+ + GL + +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q
Sbjct: 185 FLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGL 244
Query: 248 VTGEGPVENLAKHLSDPFANNLLT 271
VTG GP +NL HL+DP NN+LT
Sbjct: 245 VTGVGPYQNLLDHLADPVNNNVLT 268
>TAIR|locus:2202150 [details] [associations]
symbol:Lhca6 "photosystem I light harvesting complex gene
6" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019761
"glucosinolate biosynthetic process" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002684 GO:GO:0009507 GO:GO:0016020 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 KO:K08908 EMBL:AY086461 EMBL:BT020322
EMBL:BT020554 IPI:IPI00532569 RefSeq:NP_173349.1 UniGene:At.359
ProteinModelPortal:Q8LCQ4 SMR:Q8LCQ4 STRING:Q8LCQ4 PRIDE:Q8LCQ4
DNASU:838498 EnsemblPlants:AT1G19150.1 GeneID:838498
KEGG:ath:AT1G19150 TAIR:At1g19150 InParanoid:Q8LCQ4 OMA:WFAQAEL
PhylomeDB:Q8LCQ4 ProtClustDB:PLN00098 Genevestigator:Q8LCQ4
Uniprot:Q8LCQ4
Length = 270
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 72/216 (33%), Positives = 108/216 (50%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P G S PE+L G +PGD+G+DP GL PD S+WAML
Sbjct: 63 PDRPLWFP-G----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 117
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGA--LLLDGNTLNYFGKNIPINLVFAVI-AEIVL 184
G IIPE + G W+ G+ D TL + + + + A+++
Sbjct: 118 VTGIIIPECLERLGFI--ENFSWYDAGSREYFADSTTL-FVAQMVLMGWAEGRRWADLIK 174
Query: 185 VGGAEYY-RITNGLDLE-DKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAML 240
G + + + ++ + D +PGG FD + + P+ +L+ KEIKNGRLAM A L
Sbjct: 175 PGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFL 234
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
GF QA T + P+ENL HL+DP N+ + + +
Sbjct: 235 GFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>TAIR|locus:2825741 [details] [associations]
symbol:Lhca5 "photosystem I light harvesting complex gene
5" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009782 "photosystem I
antenna complex" evidence=IDA] [GO:0031409 "pigment binding"
evidence=IDA] [GO:0009768 "photosynthesis, light harvesting in
photosystem I" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009657 "plastid organization" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0010207 "photosystem II assembly" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684 EMBL:AC083835
GO:GO:0009535 GO:GO:0031409 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 GO:GO:0009768
UniGene:At.52042 EMBL:AY062097 EMBL:AY090263 EMBL:AK221694
IPI:IPI00542586 PIR:F96510 RefSeq:NP_175137.1 RefSeq:NP_849778.1
UniGene:At.20798 ProteinModelPortal:Q9C639 SMR:Q9C639 STRING:Q9C639
PRIDE:Q9C639 EnsemblPlants:AT1G45474.1 EnsemblPlants:AT1G45474.2
GeneID:841099 KEGG:ath:AT1G45474 TAIR:At1g45474 InParanoid:Q9C639
KO:K08911 OMA:VQASVTH PhylomeDB:Q9C639 ProtClustDB:PLN00147
Genevestigator:Q9C639 GO:GO:0009782 Uniprot:Q9C639
Length = 256
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 71/202 (35%), Positives = 103/202 (50%)
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLS---KKPDDFSKWAMLGAAGFIIPEAFNKFG 141
P LD + +Y G P G DP L + S++AMLG AG + + G
Sbjct: 55 PPPYLDGNLAGDY--GFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTG 112
Query: 142 ANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIA---EIVLVG-----GAEYYR 192
P VW++ GA+ D +T + + FA + V G G+ ++
Sbjct: 113 IRNLP--VWYEAGAVKFDFASTKTLIVVQFLL-MGFAETKRYMDFVSPGSQAKEGSFFFG 169
Query: 193 ITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+ L+ + +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+QA VT
Sbjct: 170 LEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 229
Query: 252 GPVENLAKHLSDPFANNLLTVI 273
GP++NL +HLS+P+ ++ +
Sbjct: 230 GPIDNLVEHLSNPWHKTIIQTL 251
>TAIR|locus:2146544 [details] [associations]
symbol:AT5G28450 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0030076
"light-harvesting complex" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 EMBL:CP002688 GO:GO:0009507 GO:GO:0016020
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
IPI:IPI00523588 RefSeq:NP_198197.1 UniGene:At.46743
UniGene:At.55066 ProteinModelPortal:F4K8I1 SMR:F4K8I1 DNASU:832932
EnsemblPlants:AT5G28450.1 GeneID:832932 KEGG:ath:AT5G28450
KO:K08908 PhylomeDB:F4K8I1 Uniprot:F4K8I1
Length = 173
Score = 160 (61.4 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 36/72 (50%), Positives = 45/72 (62%)
Query: 195 NGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 252
N L D +PGG FDPLG P + L+ KEIKNGRLAM A++G + Q TG G
Sbjct: 90 NKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 149
Query: 253 PVENLAKHLSDP 264
P++NL HL+DP
Sbjct: 150 PIDNLFAHLADP 161
>TAIR|locus:2036209 [details] [associations]
symbol:LHCB6 "light harvesting complex photosystem II
subunit 6" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0015979
"photosynthesis" evidence=IMP;NAS] [GO:0009783 "photosystem II
antenna complex" evidence=NAS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0010196 "nonphotochemical quenching"
evidence=IMP] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006816 "calcium ion transport" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0009651 "response to salt
stress" evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 EMBL:AC034256 HOGENOM:HOG000238033 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 GO:GO:0009783 GO:GO:0010196
UniGene:At.25300 EMBL:AF332425 EMBL:AY065113 EMBL:AY081644
IPI:IPI00524194 PIR:F86292 RefSeq:NP_173034.1 UniGene:At.15569
UniGene:At.72611 UniGene:At.74824 UniGene:At.74983
ProteinModelPortal:Q9LMQ2 SMR:Q9LMQ2 STRING:Q9LMQ2 PaxDb:Q9LMQ2
PRIDE:Q9LMQ2 DNASU:838151 EnsemblPlants:AT1G15820.1 GeneID:838151
KEGG:ath:AT1G15820 TAIR:At1g15820 eggNOG:NOG277110
InParanoid:Q9LMQ2 KO:K08917 OMA:SWIPAFK PhylomeDB:Q9LMQ2
ProtClustDB:PLN00170 ArrayExpress:Q9LMQ2 Genevestigator:Q9LMQ2
Uniprot:Q9LMQ2
Length = 258
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 46/139 (33%), Positives = 63/139 (45%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNK---FG 141
PE+L G +PGD+G+DP GL K P +WAM G + +A++ F
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFE 129
Query: 142 ANCGPEAVW-FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT--NGLD 198
A P+A+ F G+LL G L G V + V A + T N +
Sbjct: 130 AGAQPDAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFAN 187
Query: 199 LE-DKLHPGGPF-DPLGLA 215
D+ +PGG F DPLGLA
Sbjct: 188 YTGDQGYPGGRFFDPLGLA 206
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.141 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 283 252 0.00082 114 3 11 22 0.48 33
32 0.47 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 598 (64 KB)
Total size of DFA: 184 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.52u 0.07s 21.59t Elapsed: 00:00:01
Total cpu time: 21.53u 0.07s 21.60t Elapsed: 00:00:01
Start: Thu May 9 23:20:33 2013 End: Thu May 9 23:20:34 2013