BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023372
(283 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/293 (82%), Positives = 261/293 (89%), Gaps = 11/293 (3%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS A S+G EMLGNPLN S A R++AP +S PST K VALFSKKKAAPP K+
Sbjct: 1 MASLAASRA-AGSLGVSEMLGNPLNFSGATRSAAPTSSTPSTLKTVALFSKKKAAPPPKA 59
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSPV++ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 60 KPAAVSPVDDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 119
Query: 121 SK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 170
+K WAMLGAAGFI+PEAFNKFGANCGPEAVWFKTGALLLDG TLNYFG +I
Sbjct: 120 AKYQAYELIHARWAMLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSI 179
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 230
PINLV AVIAE+VL+GGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIK
Sbjct: 180 PINLVVAVIAEVVLLGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIK 239
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
NGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTV++G+AERAPTL
Sbjct: 240 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVLAGSAERAPTL 292
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/279 (84%), Positives = 245/279 (87%), Gaps = 12/279 (4%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A RT AP AS+P+TFK VALFSKKKAAP VSP +EELAK
Sbjct: 14 GVSEMLGNPLNFSGASRT-APSASSPATFKTVALFSKKKAAPAKAKP-APVSPADEELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDRRIFLPEGLLDRSEIP YLTGEVPGDYGYDPFGLSKKP+DF+K WA
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+FAV+AE+VL
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVL 191
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
VGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGFF+
Sbjct: 192 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFFI 251
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
QAYVTGEGPVENLA HLSDPF NNLLTVI+G AERAPTL
Sbjct: 252 QAYVTGEGPVENLAAHLSDPFGNNLLTVIAGTAERAPTL 290
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/293 (81%), Positives = 254/293 (86%), Gaps = 16/293 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ E+LGNP+N+ A R SAP + P+TFK VALFSKKK APP K
Sbjct: 1 MASLAASTA-----AMSEILGNPVNLRCATR-SAPSPTTPATFKTVALFSKKKPAPPPKK 54
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 55 KPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 114
Query: 121 SK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 170
+K WAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK I
Sbjct: 115 AKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPI 174
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 230
PINL+ AV+AEIVLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIK
Sbjct: 175 PINLILAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIK 234
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
NGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 235 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 287
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/293 (81%), Positives = 253/293 (86%), Gaps = 16/293 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ E+LGNP+N+ A R SAP + P+TFK VALFSKKK APP K
Sbjct: 1 MASLAASTA-----AMSEILGNPVNLRCATR-SAPSPTTPATFKTVALFSKKKPAPPPKK 54
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 55 KPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 114
Query: 121 SK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 170
+K WAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK I
Sbjct: 115 AKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPI 174
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 230
PIN + AV+AEIVLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIK
Sbjct: 175 PINFILAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIK 234
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
NGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 235 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 287
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/279 (83%), Positives = 246/279 (88%), Gaps = 12/279 (4%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A R+++P AS P+TFK VALFSKKK A K KP AVSP + ELAK
Sbjct: 14 GVSEMLGNPLNFSGATRSASPAASTPATFKTVALFSKKKPA--PKPKPSAVSPADVELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF K WA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++L
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVIL 191
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
VGGAEY+RITNGL +DKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGFF
Sbjct: 192 VGGAEYFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFF 251
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAP+L
Sbjct: 252 QAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPSL 290
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/294 (81%), Positives = 251/294 (85%), Gaps = 17/294 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ EMLGNP+++ A R SAP S P TFK VALFSKKKAAPP
Sbjct: 1 MASLAASTA-----AMSEMLGNPVSLRGATR-SAPSPSTPVTFKTVALFSKKKAAPPPPK 54
Query: 61 KPVA-VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
K A VSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+D
Sbjct: 55 KKPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPED 114
Query: 120 FSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 169
F+K WAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK
Sbjct: 115 FAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 174
Query: 170 IPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 229
IPINL+ AV+AEIVLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEI
Sbjct: 175 IPINLIVAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEI 234
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
KNGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+ ERAPTL
Sbjct: 235 KNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPTL 288
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/284 (79%), Positives = 243/284 (85%), Gaps = 11/284 (3%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPG-ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVN 69
A S+ EMLG+P+ S R +AP AS+P+TFK VALF KK AA P K+K A SP++
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPTPASSPATFKTVALFKKKSAAAPVKAKAAAASPLD 63
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK------- 122
+ELAKWYGPDRRIFLPEGLLD+SEIPEYL GEVPGDYGYDPFGLSKKP+DF+K
Sbjct: 64 DELAKWYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELI 123
Query: 123 ---WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 179
WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL YFGKNIPINLV AVI
Sbjct: 124 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGKNIPINLVLAVI 183
Query: 180 AEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMF+M
Sbjct: 184 AEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSM 243
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
LGFF+QAYVTG+GPVENLA HLSDPF NNLLTVI G ER PTL
Sbjct: 244 LGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVIGGATERVPTL 287
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/279 (80%), Positives = 235/279 (84%), Gaps = 14/279 (5%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EML NPL+ SS SAP S P+TFK VALF KK AAP A VN+ELAK
Sbjct: 14 GVSEMLRNPLSFSS---RSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASP-VNDELAK 69
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+K WA
Sbjct: 70 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG NIPINL+ AVIAE+VL
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVL 189
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
VGGAEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMFAMLGF+
Sbjct: 190 VGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYF 249
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
QAYVTGEGPVENLAKHLSDPF NNLLTVISGNAER PTL
Sbjct: 250 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 288
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/283 (77%), Positives = 236/283 (83%), Gaps = 12/283 (4%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+G EMLG PLN + R SAP AS P+TFK VALFSKKK A K VS N+
Sbjct: 3 ATSLGVSEMLGTPLNFRAVSRPSAPLASIPATFKTVALFSKKKPA--PPPKAKTVSAAND 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-------- 122
ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+K
Sbjct: 61 ELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIH 120
Query: 123 --WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
WAMLGAAG IIPEA NK+GANCGPEAVWFKTGALLLDGNTL+YFGKNIPINLV AV+
Sbjct: 121 ARWAMLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKNIPINLVLAVVG 180
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VL+GGAEYYRITNGLD EDKLHPGGPFDPL LAKDP+Q ALLKVKEIKNGRLAMF+M
Sbjct: 181 EVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLDLAKDPEQGALLKVKEIKNGRLAMFSMF 240
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTGEGPVENL+KHLSDPF NNLLTVI+G AERAPTL
Sbjct: 241 AFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIAGTAERAPTL 283
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 241/279 (86%), Gaps = 11/279 (3%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N S A R + AS+P++FK VALFSKKKA P K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINFSGATRPAPS-ASSPASFKTVALFSKKKATPTPPKKAAAAAPANDELAK 72
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+K WA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 132
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVL
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVL 192
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
VGGAEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+
Sbjct: 193 VGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF 252
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 253 QAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 291
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/279 (81%), Positives = 242/279 (86%), Gaps = 13/279 (4%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N+S A R + AS+P++FK VALFSKKKAA K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINLSGATRPAPS-ASSPASFKTVALFSKKKAA--PPKKAAAAAPANDELAK 70
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DFSK WA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 130
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVL
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVL 190
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
VGGAEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+
Sbjct: 191 VGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF 250
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
QAYVTGEGPVENLAKHLSDPF NNLLTVISG+AERAPTL
Sbjct: 251 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 241/279 (86%), Gaps = 13/279 (4%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N+S A R + AS+P++FK VALFSKKKAA K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINLSGATRPAPS-ASSPASFKTVALFSKKKAA--PPKKAAAAAPANDELAK 70
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP GLSKKP+DFSK WA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWA 130
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVL
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVL 190
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
VGGAEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+
Sbjct: 191 VGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF 250
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
QAYVTGEGPVENLAKHLSDPF NNLLTVISG+AERAPTL
Sbjct: 251 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/282 (80%), Positives = 245/282 (86%), Gaps = 13/282 (4%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+P+TFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPATFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+K
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 181
WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178
Query: 182 IVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLG
Sbjct: 179 VVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 238
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 239 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/288 (73%), Positives = 236/288 (81%), Gaps = 22/288 (7%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ ++LG LN + + R T+AP A K V+LFSKK P K KP AVS
Sbjct: 2 AALAPSKILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPAAVSSSS 55
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+K
Sbjct: 56 PDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQA 115
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 175
WAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINLV
Sbjct: 116 YELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLV 175
Query: 176 FAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
AVIAE++LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLA
Sbjct: 176 VAVIAEVILVGGAEYYRITNGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLA 235
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
MF+M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 236 MFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/288 (73%), Positives = 236/288 (81%), Gaps = 22/288 (7%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ ++LG LN + + R T+AP A K V+LFSKK P K KP AVS
Sbjct: 2 AALAPSKILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPAAVSSSS 55
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+K
Sbjct: 56 PDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQA 115
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 175
WAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINLV
Sbjct: 116 YELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLV 175
Query: 176 FAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
AVIAE+VLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLA
Sbjct: 176 VAVIAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLA 235
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
MF+M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 236 MFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/287 (73%), Positives = 235/287 (81%), Gaps = 22/287 (7%)
Query: 13 SIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP--- 67
++ ++LG LN + + R T+AP A K V+LFSKK P K KPV VS
Sbjct: 2 ALAPSKILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPVPVSSSSP 55
Query: 68 -VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK---- 122
+++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+K
Sbjct: 56 DISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAY 115
Query: 123 ------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 176
WAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINLV
Sbjct: 116 ELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLVV 175
Query: 177 AVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 236
AVIAE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAM
Sbjct: 176 AVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAM 235
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
F+ML FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 236 FSMLAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 282
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/282 (78%), Positives = 236/282 (83%), Gaps = 14/282 (4%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG+PL + A R S+ AS P+ K VALFSKKKAA P N+E
Sbjct: 2 ASLGVSEMLGSPLKFAVASRPSSASASTPA--KIVALFSKKKAA--PAKTKAPPPPANDE 57
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
LAKWYGPDRRIFLP+GLLDRSE+P YL GEVPGDYGYDPFGL KKP+DF+K
Sbjct: 58 LAKWYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHA 117
Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 181
WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AVIAE
Sbjct: 118 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVIAE 177
Query: 182 IVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
+VL+GGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ A+LK KEIKNGRLAMFAMLG
Sbjct: 178 VVLLGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKAKEIKNGRLAMFAMLG 237
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FFLQAYVTGEGPVENL+KHLSDPF NNLLTVIS +AER PTL
Sbjct: 238 FFLQAYVTGEGPVENLSKHLSDPFGNNLLTVISSSAERVPTL 279
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/285 (73%), Positives = 234/285 (82%), Gaps = 16/285 (5%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ ++LG LN + + R T+AP A K V+LFSKK A P S + SP +
Sbjct: 2 AALAPSKILGTKLNFAGSSRYATAAPTAG---AQKIVSLFSKKPAQKPKPSAVSSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK------ 122
++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+K
Sbjct: 59 SDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYEL 118
Query: 123 ----WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 178
WAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AV
Sbjct: 119 IHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAV 178
Query: 179 IAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
IAE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMF+
Sbjct: 179 IAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFS 238
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 239 MFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/283 (79%), Positives = 247/283 (87%), Gaps = 11/283 (3%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+ EMLG+P+ S R +AP S+P+TFK VALF KK AA PAK VA++P +E
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPTPSSPATFKTVALFKKKAAAAPAKKA-VAIAPADE 62
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-------- 122
ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+K
Sbjct: 63 ELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIH 122
Query: 123 --WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
WAMLGAAGF+IPEAFNKFGA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 123 ARWAMLGAAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 182
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VL+GGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMFAML
Sbjct: 183 EVVLLGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAML 242
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
GFF+QAYVTG+GPVENLA HLSDPF NNLLTVI+G AERAPTL
Sbjct: 243 GFFIQAYVTGKGPVENLAAHLSDPFGNNLLTVIAGTAERAPTL 285
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 224/283 (79%), Positives = 244/283 (86%), Gaps = 10/283 (3%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+ EMLG+P+ S R +AP S+ +TFK VALF KK AA PAK+K AVSP ++
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPSPSSSATFKTVALFKKKAAAAPAKAKAAAVSPADD 63
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-------- 122
ELAKWYGPDRRIFLPEGLLDRSEIPEYL GEVPG+YGYDPFGLSKKP+DF+K
Sbjct: 64 ELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIH 123
Query: 123 --WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+ AV+A
Sbjct: 124 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLILAVVA 183
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMF+ML
Sbjct: 184 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSML 243
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
GFF+QAYVTG+GPVENLA HLSDPF NNLLTVI G +ER PTL
Sbjct: 244 GFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVIGGASERVPTL 286
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 227/282 (80%), Positives = 245/282 (86%), Gaps = 13/282 (4%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+PSTFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+K
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 181
WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178
Query: 182 IVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLG
Sbjct: 179 VVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 238
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 239 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/282 (80%), Positives = 245/282 (86%), Gaps = 13/282 (4%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+PSTFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+K
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 181
WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178
Query: 182 IVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
+VL+GG+EYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLG
Sbjct: 179 VVLLGGSEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 238
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 239 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/303 (69%), Positives = 238/303 (78%), Gaps = 20/303 (6%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
FGLSKKP++F K WAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 161 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQ 220
TL+YFG +IPINL+ AV+AE++LVGGAEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQ
Sbjct: 181 GTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQ 240
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 280
FALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTV+ G+ ERA
Sbjct: 241 FALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERA 300
Query: 281 PTL 283
PTL
Sbjct: 301 PTL 303
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/303 (69%), Positives = 238/303 (78%), Gaps = 20/303 (6%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
FGLSKKP++F K WAMLGAAGFI+PEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 161 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQ 220
TL+YFG +IPINL+ AV+AE++LVGGAEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQ
Sbjct: 181 GTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQ 240
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 280
FALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTV+ G+ ERA
Sbjct: 241 FALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERA 300
Query: 281 PTL 283
PTL
Sbjct: 301 PTL 303
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/303 (69%), Positives = 237/303 (78%), Gaps = 20/303 (6%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
FGL KKP++F K WAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLIKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 161 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQ 220
TL+YFG +IPINL+ AV+AE++LVGGAEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQ
Sbjct: 181 GTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQ 240
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 280
FALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTV+ G+ ERA
Sbjct: 241 FALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERA 300
Query: 281 PTL 283
PTL
Sbjct: 301 PTL 303
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/303 (69%), Positives = 237/303 (78%), Gaps = 20/303 (6%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
FGLSKKP++F K WAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 161 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQ 220
TL+YFG +I INL+ AV+AE++LVGGAEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQ
Sbjct: 181 GTLSYFGASIHINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQ 240
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 280
FALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTV+ G+ ERA
Sbjct: 241 FALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERA 300
Query: 281 PTL 283
PTL
Sbjct: 301 PTL 303
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/285 (75%), Positives = 234/285 (82%), Gaps = 16/285 (5%)
Query: 12 ASIGAKEMLGNPLN--VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ +MLG LN VSS T+AP K V+LFSKK A P + + SP +
Sbjct: 2 AALAPSKMLGTRLNFAVSSRYATAAP---TTGAQKIVSLFSKKPAPKPKPAAVTSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK------ 122
+ELAKWYGPDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSKKP+DFSK
Sbjct: 59 GDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYEL 118
Query: 123 ----WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 178
WAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV
Sbjct: 119 IHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAV 178
Query: 179 IAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+
Sbjct: 179 AAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFS 238
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
MLGFF+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 239 MLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/286 (73%), Positives = 231/286 (80%), Gaps = 18/286 (6%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP---- 67
A++ +MLG LN + + R AP A K V+LFSKK P K+KP S
Sbjct: 2 AALAPTKMLGTRLNFAGSSRY-APAAPTSGAQKIVSLFSKK---PAQKAKPATASSSGSD 57
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----- 122
+ +ELAKWYGPDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++
Sbjct: 58 IGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYE 117
Query: 123 -----WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 177
WAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLL+GNTLNYFG +IPINL A
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVA 177
Query: 178 VIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
V+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF
Sbjct: 178 VVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMF 237
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
+MLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVIS AER P+L
Sbjct: 238 SMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISAGAERTPSL 283
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/283 (74%), Positives = 232/283 (81%), Gaps = 12/283 (4%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-------- 122
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSK
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 123 --WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
WAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV A
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAA 180
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+ML
Sbjct: 181 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSML 240
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
GFF+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 241 GFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/249 (82%), Positives = 218/249 (87%), Gaps = 12/249 (4%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A R+++P A+ P+TFK VALFSKKKAA K KP AVSP + ELAK
Sbjct: 14 GVSEMLGNPLNFSGATRSASPAATTPATFKTVALFSKKKAA--PKPKPSAVSPADVELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF K WA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++L
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVIL 191
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
VGGAEY+RITNGL +DKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGFFL
Sbjct: 192 VGGAEYFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFL 251
Query: 245 QAYVTGEGP 253
QAYVTG+ P
Sbjct: 252 QAYVTGDVP 260
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/225 (83%), Positives = 203/225 (90%), Gaps = 10/225 (4%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK------ 122
+EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F K
Sbjct: 54 SEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYEL 113
Query: 123 ----WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 178
WAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV
Sbjct: 114 IHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAV 173
Query: 179 IAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+AE++LVGGAEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+
Sbjct: 174 VAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFS 233
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 234 MLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 278
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/286 (73%), Positives = 228/286 (79%), Gaps = 18/286 (6%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP---- 67
A++ +MLG LN + + R AP A K V+LFSKK P K+KP S
Sbjct: 2 AALAPTKMLGTRLNFAGSSRY-APAAPTSGAQKIVSLFSKK---PAQKAKPATASSSGSD 57
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----- 122
+ +ELAKWYGPDRRIFL EGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++
Sbjct: 58 IGDELAKWYGPDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYE 117
Query: 123 -----WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 177
WAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLL+GNTLNYFG +IPINL A
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVA 177
Query: 178 VIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
V+AE+VLVGGAEYYRI NGLDLE KLHPGGPFDPLGLA DPDQ A LKVKEIKNGRLAMF
Sbjct: 178 VVAEVVLVGGAEYYRIINGLDLEGKLHPGGPFDPLGLASDPDQAAPLKVKEIKNGRLAMF 237
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
MLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVIS AERAP+L
Sbjct: 238 PMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISAGAERAPSL 283
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 214/288 (74%), Positives = 234/288 (81%), Gaps = 19/288 (6%)
Query: 12 ASIGAKEMLGNPLNV--SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ +MLG LN SS+ T+AP A K V+LF P AK KP VS
Sbjct: 2 AALAPTKMLGTRLNFTGSSSYTTAAPTAGAK---KIVSLFGGFNKKPAAKPKPAPVSSSG 58
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+++ELAKWYGPDRRIFLP+GLLDRSE+PEYL GEVPGDYGYDPFGLSKKPDDF+K
Sbjct: 59 ADIDDELAKWYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQA 118
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 175
WAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 119 YELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLI 178
Query: 176 FAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLA
Sbjct: 179 LAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLA 238
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
MF+MLGFF+QAYVTGEGPVENL+ HLSDPF NNLLTVISG AER P+L
Sbjct: 239 MFSMLGFFIQAYVTGEGPVENLSAHLSDPFGNNLLTVISGAAERTPSL 286
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/288 (70%), Positives = 230/288 (79%), Gaps = 19/288 (6%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ +MLG L+ + + R T+AP A K V+LF + P K KP V+
Sbjct: 2 AALAPTKMLGTRLDFAGSSRYATAAPTAGAQ---KIVSLFDRFNKKPAPKPKPAPVATSS 58
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+++ELAKWYGPDRRI+LP GLLDRSE+PEYL GEVPGDYGYDPFGL KKP+DF+K
Sbjct: 59 AGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQA 118
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 175
WAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 119 FELIHARWAMLGAAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLI 178
Query: 176 FAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
AV+AE+VLVGGAEYYRITNGL+ +DKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLA
Sbjct: 179 LAVVAEVVLVGGAEYYRITNGLEFDDKLHPGGPFDPLGLATDPDQAALLKVKEIKNGRLA 238
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
MF+MLGFF+QAYVTGEGP ENL HLSDPF NNLLTVISG AER P+L
Sbjct: 239 MFSMLGFFIQAYVTGEGPFENLCAHLSDPFGNNLLTVISGAAERVPSL 286
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 207/303 (68%), Positives = 235/303 (77%), Gaps = 21/303 (6%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGA-----SNPSTFKPVALFS----- 50
MAS+ A + AA A ++L NPLN++ ++A ++PS + V+LF
Sbjct: 1 MASMRALGSTAALGRADQILWNPLNLNKLAASTAASRSSTRPTSPS-LQVVSLFGFKKKA 59
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
PP A +P EELAKWYGPDRRIFLPEGLLDR +IPEYL GEVPGDYGYDP
Sbjct: 60 APPPPPPKSKAKAAAAPATEELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDP 119
Query: 111 FGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
FGL +KP++F K WAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 120 FGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 179
Query: 161 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQ 220
TL+YFG +IPINL+ AV+AE+VLVGGAEYYR TNGL+ +DKLHPGGPFDPLGLAKDPDQ
Sbjct: 180 GTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLNFDDKLHPGGPFDPLGLAKDPDQ 239
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 280
FALLKVKEIKNGRLAMF+MLGFFLQAYVTGEGPVENLA HLSDPF NN+LTV+ G+ ERA
Sbjct: 240 FALLKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVLGGSLERA 299
Query: 281 PTL 283
PTL
Sbjct: 300 PTL 302
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/231 (77%), Positives = 197/231 (85%), Gaps = 14/231 (6%)
Query: 67 PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------ 120
P NEELAKWYGPDRRI+LPEGLL + EIP YLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 40 PSNEELAKWYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAY 99
Query: 121 ----SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 176
++WAMLGAAGF++PEAFNKFGA CGPEAVW+KTGALLL+G+++ YFG +PINL
Sbjct: 100 ELIHARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAA 159
Query: 177 AVIAEIVLVGGAEYYRITN----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 232
AVIAE++LVGGAEYYR TN GL D+LHPGG FDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 160 AVIAEVILVGGAEYYRSTNKDVYGLQDLDRLHPGGAFDPLGLAKDPDQFALLKVKEIKNG 219
Query: 233 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
RLAMF+MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTVI G AER P+L
Sbjct: 220 RLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVIQGTAERTPSL 270
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 176/221 (79%), Positives = 191/221 (86%), Gaps = 11/221 (4%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK------ 122
N+ELAKWYG RRI+LPEG+LDRS++PEYLTGEVPGDYG+DPFGLSKKP DF K
Sbjct: 52 NDELAKWYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYEL 111
Query: 123 ----WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 178
WAMLGAAGF+IPEAFNKFGA CGPEAVWFKTGALLLDG TLNYFG NIPINLV AV
Sbjct: 112 IHARWAMLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGANIPINLVLAV 171
Query: 179 IAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+AE++LVGGAEYYR N L L D+LHPGGPFDPLGLAKDPD FALLKVKEIKNGRLAMFA
Sbjct: 172 LAEVILVGGAEYYRSINNLGL-DRLHPGGPFDPLGLAKDPDNFALLKVKEIKNGRLAMFA 230
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAER 279
MLGFF+QAY TGEGPVENL HLSDPF NNLL+VI+G E+
Sbjct: 231 MLGFFIQAYATGEGPVENLTTHLSDPFGNNLLSVIAGGIEK 271
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 363 bits (931), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 186/217 (85%), Positives = 196/217 (90%), Gaps = 10/217 (4%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAML 126
GPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSK WAML
Sbjct: 6 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAML 65
Query: 127 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 186
GAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VLVG
Sbjct: 66 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVG 125
Query: 187 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
GAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 126 GAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQA 185
Query: 247 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
YVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 186 YVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 222
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 177/228 (77%), Positives = 198/228 (86%), Gaps = 15/228 (6%)
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--------- 120
EELAKWYGPDRRI+LPEGLL + EIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 1 EELAKWYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELI 60
Query: 121 -SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 179
++WAMLGAAGF++PEAFNKFGA CGPEAVW+KTGALLL+G+++ YFG +P+NL AVI
Sbjct: 61 HARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVI 120
Query: 180 AEIVLVGGAEYYRITN----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
AE++LVGGAEYYR TN G DL D+LHPGG FDPLGLAKDPDQFALLKVKEIKNGRLA
Sbjct: 121 AEVILVGGAEYYRSTNKSPLGSDL-DRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLA 179
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
MF+MLGFF+QAYVTGEGPVENL+ HLSDPF NNLLTVI G AERAP+L
Sbjct: 180 MFSMLGFFVQAYVTGEGPVENLSAHLSDPFGNNLLTVIQGTAERAPSL 227
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 175/235 (74%), Positives = 190/235 (80%), Gaps = 18/235 (7%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
+++P A S + WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+
Sbjct: 35 RARPTAASG-----SPWYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPE 86
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLG AGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG
Sbjct: 87 TFAKNRELEVIHCRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGN 146
Query: 169 NIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+IPINL+ AVIAE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKE
Sbjct: 147 SIPINLILAVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKE 206
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
IKNGRLAMF+MLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVIS AER P+L
Sbjct: 207 IKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISAGAERTPSL 261
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 171/201 (85%), Positives = 180/201 (89%), Gaps = 10/201 (4%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGA 142
E+PEYL GEVPGDYGYDPFGLSKKP+DFSK WAMLGAAGFIIPEA NKFGA
Sbjct: 1 EVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 60
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
NCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VLVGGAEYYRI NGLDLEDK
Sbjct: 61 NCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLDLEDK 120
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
LHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENL+KHLS
Sbjct: 121 LHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLS 180
Query: 263 DPFANNLLTVISGNAERAPTL 283
DPF NNLLTVISG AER P+L
Sbjct: 181 DPFGNNLLTVISGAAERTPSL 201
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 186/228 (81%), Positives = 192/228 (84%), Gaps = 11/228 (4%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S R+SAP SN S FK VALFSKKKAAPP +EELAK
Sbjct: 14 GVSEMLGNPLNFSGGARSSAPTPSNSSIFKTVALFSKKKAAPPKPKAAAVAP-ADEELAK 72
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDRRIFLPEGLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+K WA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 132
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL
Sbjct: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVVL 192
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 232
VGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNG
Sbjct: 193 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNG 240
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 139/159 (87%), Positives = 147/159 (92%)
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AVIAE+VL
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVVL 60
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
VGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMF+M FF+
Sbjct: 61 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI 120
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 121 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 159
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 286 bits (731), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 183/273 (67%), Gaps = 50/273 (18%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAG 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSK+
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKY------- 113
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY 190
+A+ A W +VLVGGAEY
Sbjct: 114 ----QAYELI------HARW-------------------------------VVLVGGAEY 132
Query: 191 YRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250
YRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QAYVTG
Sbjct: 133 YRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTG 192
Query: 251 EGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
EGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 193 EGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 225
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/163 (89%), Positives = 155/163 (95%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 144/163 (88%), Positives = 153/163 (93%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVT 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/163 (88%), Positives = 154/163 (94%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 145/163 (88%), Positives = 154/163 (94%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/163 (88%), Positives = 154/163 (94%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTG+GPVENLA H+SDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIQAYVTGQGPVENLASHMSDPFGNNLLTVISGNIERVPTL 171
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/163 (88%), Positives = 154/163 (94%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTG+GPVE+LA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIQAYVTGQGPVESLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 280 bits (716), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 144/163 (88%), Positives = 154/163 (94%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF++AYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIKAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 144/163 (88%), Positives = 153/163 (93%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYV G+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIQAYVAGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 280 bits (715), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 144/163 (88%), Positives = 153/163 (93%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTG+GPVENLA HLSDPF NNLLTVI GN ER PTL
Sbjct: 129 AFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIYGNIERVPTL 171
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 280 bits (715), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 144/163 (88%), Positives = 153/163 (93%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNI INLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIHINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 280 bits (715), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 144/163 (88%), Positives = 153/163 (93%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTG+ PVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIQAYVTGQCPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/163 (87%), Positives = 152/163 (93%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNI INLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIHINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLH GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHHGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 143/163 (87%), Positives = 153/163 (93%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAG IIPEAFNK+GA+CGPEAVWFKT ALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTRALLLDGNTLNYFGKNIPINLVVAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+M
Sbjct: 69 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMF 128
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
FF++AYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 129 AFFIKAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/159 (89%), Positives = 149/159 (93%)
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VL
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVL 60
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
VGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+
Sbjct: 61 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI 120
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 121 QAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 159
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 271 bits (692), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 130/141 (92%), Positives = 137/141 (97%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AVIA
Sbjct: 9 ARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVIA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAML
Sbjct: 69 EVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAML 128
Query: 241 GFFLQAYVTGEGPVENLAKHL 261
GFF+QAYVTGEGPVENLAKHL
Sbjct: 129 GFFIQAYVTGEGPVENLAKHL 149
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 123/167 (73%), Positives = 143/167 (85%), Gaps = 5/167 (2%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WA+L AAGF+ P AFNKFG+ CGPEA+W+KTGALLL+G+++ YFG +PINL AVI+
Sbjct: 42 ARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGALLLEGDSIKYFGATVPINLAAAVIS 101
Query: 181 EIVLVGGAEYYRITN----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 236
E+ LVGG+EYYR TN G DL D+LHPGG FDPLGLAKDPDQFALLKVKEI NGRLAM
Sbjct: 102 EVNLVGGSEYYRSTNKSPLGSDL-DRLHPGGAFDPLGLAKDPDQFALLKVKEIMNGRLAM 160
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
F+MLGFF++AYVTGEGPVENLA HLSDPF NNLLTVI G AER P+L
Sbjct: 161 FSMLGFFVKAYVTGEGPVENLAAHLSDPFGNNLLTVIQGTAERTPSL 207
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/141 (91%), Positives = 137/141 (97%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAML
Sbjct: 69 EVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAML 128
Query: 241 GFFLQAYVTGEGPVENLAKHL 261
GFF+QAYVTGEGPVENLAKHL
Sbjct: 129 GFFIQAYVTGEGPVENLAKHL 149
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 128/141 (90%), Positives = 136/141 (96%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMF ML
Sbjct: 69 EVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFGML 128
Query: 241 GFFLQAYVTGEGPVENLAKHL 261
GFF+QAYVTGEGPVENLAKHL
Sbjct: 129 GFFIQAYVTGEGPVENLAKHL 149
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 128/141 (90%), Positives = 136/141 (96%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMF ML
Sbjct: 69 EVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFXML 128
Query: 241 GFFLQAYVTGEGPVENLAKHL 261
GFF+QAYVTGEGPVENLAKHL
Sbjct: 129 GFFIQAYVTGEGPVENLAKHL 149
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/141 (90%), Positives = 135/141 (95%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
++WAMLGAAGFIIPEA NK+GA CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 9 ARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVA 68
Query: 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
E+VL+GGAEYYRITN LD EDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAML
Sbjct: 69 EVVLLGGAEYYRITNELDFEDKLHPGGPFDPLGLAKDPDQGALLKVKEIKNGRLAMFAML 128
Query: 241 GFFLQAYVTGEGPVENLAKHL 261
GFF+QAYVTGEGPVENLAKHL
Sbjct: 129 GFFIQAYVTGEGPVENLAKHL 149
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 135/197 (68%), Positives = 151/197 (76%), Gaps = 12/197 (6%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-------- 122
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSK
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 123 --WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
WAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV A
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAA 180
Query: 181 EIVLVGGAEYYRITNGL 197
E+VLVGGAEYYRI NGL
Sbjct: 181 EVVLVGGAEYYRIINGL 197
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/290 (48%), Positives = 168/290 (57%), Gaps = 58/290 (20%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVN-------------------EELAKWYGPDRRIFLPEG 87
ALF K A+ PAK + V +L KWYGPDR++FLP G
Sbjct: 5 ALFKKTGASAPAKKGTASTKVVKPSKAGGKATRGWLGGQGGAADLDKWYGPDRKLFLPSG 64
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAF 137
L DRSEIPEYL GE+ GDYGYDP GL K P+ +K WAML AAG +IPE
Sbjct: 65 LYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGL 124
Query: 138 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA-EIVLVGGAEY 190
GAN WF+TGA +L+G TLNYF +P +V FAVIA E+ L+G E+
Sbjct: 125 QANGANI-KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIAVEVGLMGAVEF 181
Query: 191 YRITNG-----------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 233
YR NG D D L+PGGPFDPLGLA DP+ LKVKEIKNGR
Sbjct: 182 YR-RNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQELKVKEIKNGR 240
Query: 234 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
LAM ++LGF +Q+YVTGEGP N KH++DPF NLLTV+ G ER PTL
Sbjct: 241 LAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL-GAEERTPTL 289
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/247 (53%), Positives = 157/247 (63%), Gaps = 39/247 (15%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-------- 122
+L KWYGPDR++FLP GL DRSEIP+YL GE+ GDYGYDP GL K P+ +K
Sbjct: 18 DLDKWYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLH 77
Query: 123 --WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV----- 175
WAML AAG +IPE GAN WF+TGA +L+G TLNYF +P +V
Sbjct: 78 ARWAMLAAAGILIPEGLQANGANI-KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLP 134
Query: 176 -FAVIA-EIVLVGGAEYYRITNG-----------------LDLEDKLHPGGPFDPLGLAK 216
FAVIA E+ L+G E+YR NG D D L+PGGPFDPLGLA
Sbjct: 135 LFAVIAVEVGLMGAVEFYR-RNGSGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLAD 193
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
DP+ LKVKEIKNGRLAM ++LGF +Q+YVTGEGP N KH++DPF NLLTV+ G
Sbjct: 194 DPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL-GA 252
Query: 277 AERAPTL 283
ER PTL
Sbjct: 253 EERTPTL 259
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/287 (48%), Positives = 167/287 (58%), Gaps = 55/287 (19%)
Query: 47 ALFSKKKAAPPAK---SKPVAVSPVNE-------------ELAKWYGPDRRIFLPEGLLD 90
ALF K A+ PAK S V P + L KWYGPDR +FLP GL D
Sbjct: 5 ALFKKTAASAPAKKGTSSTKVVKPSGKATKGWLGGQGGAVNLDKWYGPDRVLFLPSGLYD 64
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKF 140
RSE+P YL GE+ GDYGYDP GL K + +K WAML AAG +IPE
Sbjct: 65 RSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAGILIPEGLQAN 124
Query: 141 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA-EIVLVGGAEYYRI 193
GAN VWF+TGA +L+G TLNYF +P +V FAVIA E+ L+G E+YR
Sbjct: 125 GANI-KGGVWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIAIEVGLMGAVEFYR- 180
Query: 194 TNG-----------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 236
NG + D ++PGGPFDPLGLA DP+ F LKVKEIKNGRLAM
Sbjct: 181 RNGTGPAGYSPGIGKFDSSVFEGLDSIYPGGPFDPLGLADDPEVFQELKVKEIKNGRLAM 240
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
++L F +Q+YVTGEGP N KH+ DPF NLLTV+ GN +R PTL
Sbjct: 241 VSVLAFAIQSYVTGEGPYTNWIKHVQDPFGYNLLTVL-GNEDRVPTL 286
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/183 (65%), Positives = 140/183 (76%), Gaps = 16/183 (8%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ ++LG LN + + R T+AP A K V+LFSKK A P S + SP +
Sbjct: 2 AALAPSKILGTKLNFAGSSRYATAAPTAG---AQKIVSLFSKKPAQKPKPSAVSSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK------ 122
++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+K
Sbjct: 59 SDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYEL 118
Query: 123 ----WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 178
WAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AV
Sbjct: 119 IHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAV 178
Query: 179 IAE 181
IAE
Sbjct: 179 IAE 181
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/181 (66%), Positives = 136/181 (75%), Gaps = 12/181 (6%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-------- 122
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSK
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 123 --WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180
WAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV A
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAA 180
Query: 181 E 181
E
Sbjct: 181 E 181
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 151/244 (61%), Gaps = 33/244 (13%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-------- 122
+L KWYGP+R++FLP GLLDR ++PEYL GE+ GDYGYDP GL K + K
Sbjct: 42 DLEKWYGPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLH 101
Query: 123 --WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-----NIPINLV 175
WAML AAG +IPE GA+ WF+TGA +L+G TLNYF P+ L
Sbjct: 102 ARWAMLAAAGILIPEGLQANGADI-KGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLA 160
Query: 176 FAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGGPFDPLGLAKDPD 219
+ EIVL+G E +R+ ++ D D+L+PGGPFDPL LA DP+
Sbjct: 161 AVTLIEIVLLGAVEKFRVDGTGPAGFSPGVGKFDSDIFDGLDQLYPGGPFDPLNLADDPE 220
Query: 220 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAER 279
FA L+VKE KNGRLAM +L F +Q+YVTGEGP N KH+SDPF NLLTV+ G+ +R
Sbjct: 221 VFAELQVKETKNGRLAMVGVLAFAIQSYVTGEGPYANFTKHISDPFGYNLLTVLQGD-DR 279
Query: 280 APTL 283
PTL
Sbjct: 280 VPTL 283
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 150/243 (61%), Gaps = 33/243 (13%)
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
L KWYGPDR +FLP GL+ R EI L G +PGDYGYDP GL+K + SK
Sbjct: 45 LDKWYGPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHA 104
Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI-----PINLVF 176
WAML AAG IIPE GA+ A WF+TGA +L+G TLN+F I P+ L
Sbjct: 105 RWAMLAAAGAIIPEGLAANGADV-KGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFV 163
Query: 177 AVIAEIVLVGGAEYYRIT----------------NGLDLEDKLHPGGPFDPLGLAKDPDQ 220
V A + L+G AE YR T + D D L+PGGPFDPLGLA DP+
Sbjct: 164 VVAANVALMGAAENYRRTGEGPAGYSPGVGKFDESAYDSMDSLYPGGPFDPLGLADDPEV 223
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 280
A LKVKEIKNGRLAM + LGF +QA VTGEGP N +KH++DPF NLLT+++G +RA
Sbjct: 224 LAELKVKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYNLLTILAGE-DRA 282
Query: 281 PTL 283
PTL
Sbjct: 283 PTL 285
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/248 (50%), Positives = 149/248 (60%), Gaps = 39/248 (15%)
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK------- 122
+ L KWYGP R +FLP GLLD S++P YL G + GDYGYDP GL K K
Sbjct: 88 QGLDKWYGPSRALFLPGGLLDPSDVPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELI 147
Query: 123 ---WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-----NIPINL 174
WAML AAG IIPE GA WF+TGA +L+G TLNYF N P+ L
Sbjct: 148 HARWAMLAAAGIIIPEGLQANGAAI-KGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPL 206
Query: 175 VFAVIAEIVLVGGAEYYR-------------------ITNGLDLEDKLHPGGPFDPLGLA 215
V+ E+ L+G E YR I +GLD L+PGGPFDPLGLA
Sbjct: 207 FLVVVIEVALLGAVERYRQSGEGPPGYSPGVGKFDSSIFSGLD---NLYPGGPFDPLGLA 263
Query: 216 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 275
DP+ FA LKVKEIKNGRLA+ ++LGF +Q+YVTGEGP N +KH++DPF NLLT+I G
Sbjct: 264 DDPETFAELKVKEIKNGRLALISVLGFAVQSYVTGEGPYANWSKHVADPFGYNLLTII-G 322
Query: 276 NAERAPTL 283
+R PTL
Sbjct: 323 AEDRVPTL 330
>gi|356510907|ref|XP_003524175.1| PREDICTED: uncharacterized protein LOC100789010 [Glycine max]
Length = 320
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/109 (89%), Positives = 103/109 (94%)
Query: 175 VFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 234
+ AV+AEIVLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRL
Sbjct: 212 ILAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRL 271
Query: 235 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
AMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+ ERAPTL
Sbjct: 272 AMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSTERAPTL 320
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 117/194 (60%), Positives = 135/194 (69%), Gaps = 20/194 (10%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
FGLSKKP++F K WAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 161 NTLNYFGKNIPINL 174
TL+YFG +IPIN
Sbjct: 181 GTLSYFGASIPINF 194
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 144/237 (60%), Gaps = 22/237 (9%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+ ++P +K K V + + +WYGPDR FL G P YL GE PGDYG+D
Sbjct: 16 RTVSSPKSKGKQVTRASI-----EWYGPDRPKFL--GPYSDGATPSYLKGEYPGDYGWDT 68
Query: 111 FGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
GLS P+ FS+ WA+LG G + PE K+G EAVWFK GA +
Sbjct: 69 AGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKAGAQIFSA 128
Query: 161 NTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLA 215
+ LNY G ++ ++ V +++L+G AE YR+ G ++ D L+PGG FDPLGLA
Sbjct: 129 DGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYRVNGGPAGEITDPLYPGGAFDPLGLA 188
Query: 216 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
DPD FA LKVKEIKNGRLA FA LGFF+QA VTG+GP++NL HL+DPFA N T+
Sbjct: 189 DDPDTFAELKVKEIKNGRLAQFAALGFFVQAIVTGKGPIQNLEDHLADPFAVNGFTI 245
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 139/217 (64%), Gaps = 21/217 (9%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----- 122
V ++YGPDR FL ++ P YL GE PGDYG+D GLS P+ F++
Sbjct: 29 VTRAAIEFYGPDRATFLGP----FTDTPSYLNGEFPGDYGWDTAGLSADPETFARYREIE 84
Query: 123 -----WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---L 174
WAMLGA G + PE K G + G EAVWFK GA + + LNY G + ++ +
Sbjct: 85 VIHARWAMLGALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDGLNYLGNSSLVHAQSI 143
Query: 175 VFAVIAEIVLVGGAEYYRITN---GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 231
+ + +++L+GGAE YR GL+ D L+PGGPFDPLGLA DPD F+ LKVKEIKN
Sbjct: 144 IATLACQVILMGGAEAYRAAGEGPGLEGLDSLYPGGPFDPLGLADDPDTFSELKVKEIKN 203
Query: 232 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 204 GRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPGVNN 240
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 143/236 (60%), Gaps = 19/236 (8%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 159
GLS P F++ WA+LGA G + PE +++ E VWFK GA +
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 160 GNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG----LDLEDKLHPGGPFDPL 212
LNY G I+ ++ + ++VL+G AE YR G LD D L+PGGPFDPL
Sbjct: 126 AGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPL 185
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GLA DPD FA LKVKEIKNGRLAMF+ LGFF+QA VTG+GPV+NL HL+DP NN
Sbjct: 186 GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNN 241
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 143/236 (60%), Gaps = 19/236 (8%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 159
GLS P F++ WA+LGA G + PE +++ E VWFK GA +
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 160 GNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG----LDLEDKLHPGGPFDPL 212
LNY G I+ ++ + ++VL+G AE YR G LD D L+PGGPFDPL
Sbjct: 126 DGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPL 185
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GLA DPD FA LKVKEIKNGRLAMF+ LGFF+QA VTG+GPV+NL HL+DP NN
Sbjct: 186 GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNN 241
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 142/235 (60%), Gaps = 23/235 (9%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
+ + PA + A V +WYGPDR FL G + P YLTGE PGDYG+D
Sbjct: 10 RSSVRPATASSRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTA 67
Query: 112 GLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 161
GLS P+ F ++WAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 68 GLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEG 127
Query: 162 TLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLG 213
LNY G NLV A +IA ++V++G AE YR G E D LHPGG FDPLG
Sbjct: 128 GLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLG 184
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 185 LADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 239
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 142/236 (60%), Gaps = 25/236 (10%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+ P S+ V P +WYGPDR FL G ++P YLTGE PGDYG+D
Sbjct: 10 RSSVRPTVASRAARVVP--RAAIEWYGPDRPKFL--GPFSEGDVPSYLTGEFPGDYGWDT 65
Query: 111 FGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
GLS P+ F ++WAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 66 AGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAE 125
Query: 161 NTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPL 212
LNY G NLV A +IA ++V++G AE YR G E D LHPGG FDPL
Sbjct: 126 GGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPL 182
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 183 GLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 238
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 144/241 (59%), Gaps = 23/241 (9%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
VA + + + PA A V +WYGPDR FL G + P YLTGE PGD
Sbjct: 4 VAKSALRSSVRPATVASRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGD 61
Query: 106 YGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 155
YG+D GLS P+ F ++WAMLGA G + PE +K+ EAVWFK GA
Sbjct: 62 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGA 121
Query: 156 LLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGG 207
+ LNY G NLV A +IA ++V++G AE YR G E D LHPGG
Sbjct: 122 QIFAEGGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGG 178
Query: 208 PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 267
FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A
Sbjct: 179 AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAV 238
Query: 268 N 268
N
Sbjct: 239 N 239
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 141/223 (63%), Gaps = 18/223 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+K
Sbjct: 130 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 187
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 173
WAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 188 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 246
Query: 174 LVFAVIA-EIVLVGGAEYYRITNGLDLEDK--LHPGGPFDPLGLAKDPDQFALLKVKEIK 230
+ A++A ++VL+G AE YR+ G ED L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 247 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 306
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
NGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 307 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 349
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 141/223 (63%), Gaps = 18/223 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+K
Sbjct: 370 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 427
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 173
WAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 428 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 486
Query: 174 LVFAVIA-EIVLVGGAEYYRITNGLDLEDK--LHPGGPFDPLGLAKDPDQFALLKVKEIK 230
+ A++A ++VL+G AE YR+ G ED L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 487 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 546
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
NGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 547 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 589
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 78/102 (76%), Gaps = 3/102 (2%)
Query: 175 VFAVIA-EIVLVGGAEYYRITNGLDLEDK--LHPGGPFDPLGLAKDPDQFALLKVKEIKN 231
+ A++A ++VL+G AE YR+ G ED L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 8 ILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKN 67
Query: 232 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
GRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 68 GRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 109
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 142/223 (63%), Gaps = 18/223 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P +++LA WYGP+R +L G + P YLTGE PGDYG+D GL+ P F+K
Sbjct: 353 TPASDKLAAWYGPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 410
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 173
WAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 411 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 469
Query: 174 LVFAVIA-EIVLVGGAEYYRITNGLDLEDK--LHPGGPFDPLGLAKDPDQFALLKVKEIK 230
+ A++A ++VL+G AE YR+ G ED L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 470 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 529
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
NGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 530 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 572
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 142/223 (63%), Gaps = 18/223 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P +++LA WYGP+R +L G + P YLTGE PGDYG+D GL+ P F+K
Sbjct: 593 TPASDKLAAWYGPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 650
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 173
WAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 651 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 709
Query: 174 LVFAVIA-EIVLVGGAEYYRITNGLDLEDK--LHPGGPFDPLGLAKDPDQFALLKVKEIK 230
+ A++A ++VL+G AE YR+ G ED L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 710 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 769
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
NGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 770 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 812
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 141/223 (63%), Gaps = 18/223 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+K
Sbjct: 113 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 170
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 173
WAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 171 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 229
Query: 174 LVFAVIA-EIVLVGGAEYYRITNGLDLEDK--LHPGGPFDPLGLAKDPDQFALLKVKEIK 230
+ A++A ++VL+G AE YR+ G ED L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 230 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 289
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
NGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 290 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 332
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 184 LVGGAEYYRITNGLDLEDK--LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
L+G AE YR+ G ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMFAM G
Sbjct: 1 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 60
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
F++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 61 FYVQALVTGEGPVENWAAHVADPFNVNGLTAV 92
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/239 (49%), Positives = 145/239 (60%), Gaps = 28/239 (11%)
Query: 53 KAAPPAKSKPVAVSP-----VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
K+A + +PV V+ V +WYGPDR FL G + P YLTGE PGDYG
Sbjct: 6 KSAARSSVRPVTVASRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYG 63
Query: 108 YDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 157
+D GLS P+ F ++WAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 64 WDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQI 123
Query: 158 LDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPF 209
LNY G NLV A +IA ++V++G AE YR G E D LHPGG F
Sbjct: 124 FAEGGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAF 180
Query: 210 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
DPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 181 DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 239
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 144/237 (60%), Gaps = 26/237 (10%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KAA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKAATKKVSVSASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 205
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP +NN
Sbjct: 206 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNN 262
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 147/252 (58%), Gaps = 25/252 (9%)
Query: 35 PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI 94
P PS F+ +L S P KS ++ WYGPDR FL G +
Sbjct: 14 PNPFTPSDFRVYSLGSATHHQHPTKSSGSTAPQLSSW--PWYGPDRPKFL--GPFSEGDT 69
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YLTGE PGDYG+D GLS P+ F ++WAMLGA G + PE +K+
Sbjct: 70 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 129
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLD 198
EAVWFK GA + LNY G NLV A +IA ++V++G AE YR G
Sbjct: 130 FGEAVWFKAGAQIFAEGGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPL 186
Query: 199 LE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 256
E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 187 GEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 246
Query: 257 LAKHLSDPFANN 268
L+ HL++P A N
Sbjct: 247 LSDHLANPSAVN 258
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 160/266 (60%), Gaps = 28/266 (10%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
M + + +SS T P NPS+ + A F+ +K+A +K VA S + WYG
Sbjct: 1 MAASSMALSSPTLTGKPVKLNPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLG 127
PDR +L E P YLTGE PGDYG+D GLS P+ FSK WAMLG
Sbjct: 53 PDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 109
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 184
A G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 168
Query: 185 VGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M GF
Sbjct: 169 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGF 228
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANN 268
F+QA VTG+GP+ENLA HLSDP NN
Sbjct: 229 FVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 142/226 (62%), Gaps = 22/226 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 44 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 97
Query: 118 DDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F S+WAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 98 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 156
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA
Sbjct: 157 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFA 216
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP +NN
Sbjct: 217 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNN 262
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 136/213 (63%), Gaps = 17/213 (7%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KW 123
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P+ F+ +W
Sbjct: 127 EWYGPDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARW 184
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 185 AMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 244
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 245 QVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 304
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
MLGF++QA TG+GPVEN A+H++DP N LT
Sbjct: 305 MLGFYVQAIATGKGPVENWAEHIADPAGVNGLT 337
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 142/236 (60%), Gaps = 31/236 (13%)
Query: 59 KSKPVAVSPVNEELAK--------WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+S V +PV A+ WYGPDR FL G + P YLTGE PGDYG+D
Sbjct: 10 RSTSVRPTPVGSRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDT 67
Query: 111 FGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
GLS P+ F ++WAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 68 AGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAE 127
Query: 161 NTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPL 212
LNY G NLV A +IA ++V++G AE YR G E D LHPGG FDPL
Sbjct: 128 GGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPL 184
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 185 GLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 240
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 137/209 (65%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++ + P YLTGE PGDYG+D GLS +P+ F+K WA
Sbjct: 52 WYGPDRVKYMGP---FSGQTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWA 108
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 181
MLG G I+PE + G G EAVWFK G+ + LNY G K I + AV+A +
Sbjct: 109 MLGTVGCIVPELLERNGVKIG-EAVWFKAGSQIFRDEGLNYLGDPKLIHAQNILAVLAAQ 167
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI+ G E D L+PGG FDPL LA DP++FA+LKVKEIKNGRLAMFAM
Sbjct: 168 VILMGAIEGYRISGGPLGEPTDPLYPGGNFDPLHLADDPEEFAILKVKEIKNGRLAMFAM 227
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LGF++QA VTG+GP+ENL HL+DPF NN
Sbjct: 228 LGFYVQAIVTGKGPLENLYDHLADPFKNN 256
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 159/266 (59%), Gaps = 28/266 (10%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
M + + +SS T P NPS+ + A F+ +K+A +K VA S + WYG
Sbjct: 1 MAASSMALSSPTLTGKPVKLNPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLG 127
PDR +L E P YLTGE PGDYG+D GLS P+ FSK WAMLG
Sbjct: 53 PDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 109
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 184
A G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 168
Query: 185 VGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GF
Sbjct: 169 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 228
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANN 268
F+QA VTG+GP+ENLA HLSDP NN
Sbjct: 229 FVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 136/213 (63%), Gaps = 17/213 (7%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KW 123
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P+ F+ +W
Sbjct: 114 EWYGPDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARW 171
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 180
AMLGA G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 172 AMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 231
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 232 QVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 291
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
MLGF++QA TG+GPVEN A+H++DP N LT
Sbjct: 292 MLGFYVQAIATGKGPVENWAEHIADPAGVNGLT 324
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 142/236 (60%), Gaps = 19/236 (8%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 159
GLS P F++ WA+LGA G + PE +++ E VWFK GA +
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 160 GNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG----LDLEDKLHPGGPFDPL 212
LNY G I+ ++ + ++VL+G AE YR G LD D L+PGGPFDPL
Sbjct: 126 DGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPL 185
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GLA DPD FA LKVKEIKNGRLAMF+ LGFF+QA VTG+GPV+NL HL+DP N
Sbjct: 186 GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNK 241
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 124/265 (46%), Positives = 157/265 (59%), Gaps = 27/265 (10%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGA 128
DR ++L G L E P YLTGE PGDYG+D GLS P+ F S+WAMLGA
Sbjct: 53 DRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 185
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 168
Query: 186 GGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 169 GAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 228
Query: 244 LQAYVTGEGPVENLAKHLSDPFANN 268
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 229 VQAIVTGKGPLENLADHLADPVNNN 253
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 122/265 (46%), Positives = 156/265 (58%), Gaps = 26/265 (9%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGA 128
DR ++L G L E P YLTGE PGDYG+D GLS P+ F S+WAMLGA
Sbjct: 53 DRVLYL--GPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 110
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 185
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 111 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 169
Query: 186 GGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G E YRI G ++ D L+PGG FDPLGLA DP+ A LKVK+IKNGRLAMF+M GFF
Sbjct: 170 GAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEACAELKVKKIKNGRLAMFSMFGFF 229
Query: 244 LQAYVTGEGPVENLAKHLSDPFANN 268
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 VQAIVTGKGPLENLADHLADPVNNN 254
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 149/258 (57%), Gaps = 39/258 (15%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAK--------------------WYGPDRRIFLP 85
+A S ++P KPV +SP ++EL WYGPDR +L
Sbjct: 1 MAASSMALSSPTLAGKPVKLSPSSQELGASRFTMRKSATTKKVASSGSPWYGPDRVKYLG 60
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPE 135
E P YLTGE PGDYG+D GLS P+ F S+WAMLGA G + PE
Sbjct: 61 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 136 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 192
++ G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR
Sbjct: 118 LLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYR 176
Query: 193 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250
I G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 177 IAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 251 EGPVENLAKHLSDPFANN 268
+GP+ENLA HLSDP NN
Sbjct: 237 KGPLENLADHLSDPVNNN 254
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 148/258 (57%), Gaps = 34/258 (13%)
Query: 29 AVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL 88
AV+TS G + ST P +K V+V E WYGPDR +L G
Sbjct: 1 AVQTSLVGTTTKSTL-------------PKGNKRVSVQAAVE----WYGPDRAKWL--GP 41
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFN 138
+P YLTGE PGDYG+D GLS P+ F K WAMLGA G + PE
Sbjct: 42 YSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILA 101
Query: 139 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITN 195
K+G E+VWF+ GA + L+Y G I+ + VI++++L+G E YR+
Sbjct: 102 KYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNG 161
Query: 196 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253
G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG+GP
Sbjct: 162 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGP 221
Query: 254 VENLAKHLSDPFANNLLT 271
VEN A+H++DPF N +
Sbjct: 222 VENWAEHVADPFTANAFS 239
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 143/232 (61%), Gaps = 23/232 (9%)
Query: 53 KAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFG 112
++A P K + V ++YGPDR FL +E P YL GE PGDYG+D G
Sbjct: 11 RSAVPTKGQ--GNKQVTRAAIEFYGPDRAGFLGP----FTESPSYLKGEFPGDYGWDTAG 64
Query: 113 LSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT 162
LS P+ F++ WAMLGA G + PE K G + G EAVWFK GA + +
Sbjct: 65 LSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDG 123
Query: 163 LNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITN---GLDLEDKLHPGGPFDPLGLAK 216
LNY G ++ ++ + +++L+GGAE YR G++ D L+PGGPFDPLGLA
Sbjct: 124 LNYLGNPSLVHAQSIIATLACQVILMGGAEAYRANGEGPGVEGLDSLYPGGPFDPLGLAD 183
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
DPD FA LK KEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 184 DPDTFAELKTKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPGVNN 235
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 135/212 (63%), Gaps = 17/212 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KW 123
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ +W
Sbjct: 111 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 168
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 180
AMLGA G + PE +K+ E VWFK G+ + L+Y G I + A++A
Sbjct: 169 AMLGALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLIHAQSILAILAC 228
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 229 QVVLMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 288
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 270
MLGF++QA TG+GPVEN A+H++DP N L
Sbjct: 289 MLGFYVQAIATGKGPVENWAEHIADPSGVNGL 320
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 136/216 (62%), Gaps = 17/216 (7%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KW 123
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ +W
Sbjct: 127 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 184
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 180
AMLG G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 185 AMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 244
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 245 QVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 304
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
MLGF++QA TG+GPVEN A+H++DP N LT+ +
Sbjct: 305 MLGFYVQAISTGKGPVENWAEHIADPSGVNGLTLAT 340
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/265 (47%), Positives = 158/265 (59%), Gaps = 32/265 (12%)
Query: 20 LGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
L +P V TSA NPS+ + A F+ +K+A +K VA S + WYGP
Sbjct: 8 LSSPTLTGKPVETSA----NPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYGP 55
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGA 128
DR +L E P YLTGE PGDYG+D GLS P+ FSK WAMLGA
Sbjct: 56 DRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGA 112
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 185
G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L+
Sbjct: 113 LGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILM 171
Query: 186 GGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF
Sbjct: 172 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 231
Query: 244 LQAYVTGEGPVENLAKHLSDPFANN 268
+QA VTG+GP+ENLA HLSDP NN
Sbjct: 232 VQAIVTGKGPLENLADHLSDPVNNN 256
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 136/216 (62%), Gaps = 17/216 (7%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KW 123
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ +W
Sbjct: 126 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 183
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 180
AMLG G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 184 AMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 243
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 244 QVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 303
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
MLGF++QA TG+GPVEN A+H++DP N LT+ +
Sbjct: 304 MLGFYVQAISTGKGPVENWAEHIADPSGVNGLTLAT 339
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 59 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 115
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 116 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 174
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 175 VILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSM 234
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 235 FGFFVQAIVTGKGPIENLADHLADPVTNN 263
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 141/233 (60%), Gaps = 26/233 (11%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S P + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKATTKKVSVPASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLREVTDPIYPGGSFDP 202
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 203 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 58 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 114
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 115 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 173
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 174 VILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSM 233
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 234 FGFFVQAIVTGKGPIENLADHLADPVTNN 262
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/226 (50%), Positives = 140/226 (61%), Gaps = 24/226 (10%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP A S + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPAAASG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 149
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
I + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 150 NPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFA 209
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 143/237 (60%), Gaps = 26/237 (10%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K++ S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKSSTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDP 205
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 206 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 156/265 (58%), Gaps = 27/265 (10%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGA 128
DR ++L G L E P YLTGE PGDYG+D GLS P+ F S+WAMLGA
Sbjct: 53 DRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGA 109
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 185
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 168
Query: 186 GGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIK GRLAMF+M GFF
Sbjct: 169 GAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKKGRLAMFSMFGFF 228
Query: 244 LQAYVTGEGPVENLAKHLSDPFANN 268
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 229 VQAIVTGKGPLENLADHLADPVNNN 253
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/226 (50%), Positives = 140/226 (61%), Gaps = 23/226 (10%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKPKPAASSG-----SPWYGADRVLYL--GPLSGREPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 118 DDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F S+WAMLG G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 87 ETFAKNRELEVIHSRWAMLGGLGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 145
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 146 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFA 205
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 167 VILMGAVEGYRVAGGPLGEITDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 237
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPIENLADHLADPVNNN 266
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 136/219 (62%), Gaps = 22/219 (10%)
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
L+ WYGP+R +L G +P YLTGE+PGDYG+D GL P +
Sbjct: 465 LSAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHG 522
Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVI 179
WAMLGA G +PE N+F E +WFK GA + LNYFG+ I+ + A++
Sbjct: 523 RWAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAIL 582
Query: 180 A-EIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 232
A +++L+G E YR N G DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNG
Sbjct: 583 ATQVLLMGAVEAYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNG 641
Query: 233 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
RLAM AMLGF+ QA VTGEGPVEN HL DP A+N LT
Sbjct: 642 RLAMMAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLT 680
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/197 (52%), Positives = 125/197 (63%), Gaps = 20/197 (10%)
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGAN 143
+P YLTGE+PGDYG+D GL P + WAMLGA G +PE N+F
Sbjct: 1 VPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGV 60
Query: 144 CGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITN----- 195
E +WFK GA + LNYFG+ I+ + A++A +++L+G E YR N
Sbjct: 61 QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQ 120
Query: 196 -GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254
G DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAM AMLGF+ QA VTGEGPV
Sbjct: 121 FGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPV 179
Query: 255 ENLAKHLSDPFANNLLT 271
EN HL DP A+N LT
Sbjct: 180 ENWLYHLQDPSAHNGLT 196
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 140/244 (57%), Gaps = 33/244 (13%)
Query: 45 PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPG 104
PVA+F+ + PA L++WYGPDR +L G + P YL GE+PG
Sbjct: 207 PVAMFAAGGSKAPAG------------LSQWYGPDRSKWL--GPYSDALTPPYLNGELPG 252
Query: 105 DYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 154
DYG+D GL P + WAMLGA G + PE ++ E VWFK G
Sbjct: 253 DYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAG 312
Query: 155 ALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGL-----DLEDKLHPG 206
A + L+Y G ++ ++ + +++L+G AE YR NGL DL D L+PG
Sbjct: 313 AQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNGLGNFGKDL-DSLYPG 371
Query: 207 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 266
GPFDPLGLA DPD A LKVKEIKNGRLAMFAM GF++QA VTGE P+ENL+ HL+ PF
Sbjct: 372 GPFDPLGLANDPDTLAELKVKEIKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFT 431
Query: 267 NNLL 270
N L
Sbjct: 432 VNGL 435
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 141/237 (59%), Gaps = 26/237 (10%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F+K WAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 205
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 206 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLTDHLADPVNNN 262
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 54 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 110
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 111 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQ 169
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 170 VILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSM 229
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 FGFFVQAIVTGKGPIENLADHLADPVNNN 258
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 144/237 (60%), Gaps = 26/237 (10%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA + + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKLTASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P++F+K WAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 205
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 206 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 149/244 (61%), Gaps = 27/244 (11%)
Query: 40 PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
PS+ A + +K A AK KP A + WYGPDR ++L G L E P YLT
Sbjct: 17 PSSLFGEARVTMRKTA--AKPKPAASG------SPWYGPDRVLYL--GPLS-GEPPSYLT 65
Query: 100 GEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAV 149
GE PGDYG+D GLS P+ F S+WAMLGA G + PE + G G EAV
Sbjct: 66 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAV 124
Query: 150 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLH 204
WFK G+ + L+Y G I + A+ A ++VL+G E YRI G ++ D L+
Sbjct: 125 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 184
Query: 205 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 185 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 244
Query: 265 FANN 268
NN
Sbjct: 245 VNNN 248
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 138/223 (61%), Gaps = 19/223 (8%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K VA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 40 KSVAKSKAVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 96
Query: 121 SK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 169
+K WAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 97 AKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPN 155
Query: 170 -IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLK 225
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 156 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELK 215
Query: 226 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 216 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 258
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 146/244 (59%), Gaps = 24/244 (9%)
Query: 43 FKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ S+K A A+ K V+ S ++ + WYG DR FL E P YL
Sbjct: 19 LKPVSELSRKVNAGEARVTMRKTVSKSSGSDSI--WYGADRPKFLGP---FSGETPSYLN 73
Query: 100 GEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAV 149
GE GDYG+D GLS P+ F++ WAMLGA G + PE K G G EAV
Sbjct: 74 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAV 132
Query: 150 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLH 204
WFK GA + L+Y G + + A+ A +++L+G E YR+ G D+ D ++
Sbjct: 133 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDVTDPIY 192
Query: 205 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP
Sbjct: 193 PGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 252
Query: 265 FANN 268
ANN
Sbjct: 253 VANN 256
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 152/265 (57%), Gaps = 28/265 (10%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P KP A + WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGA 128
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K WAMLGA
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 185
G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 167
Query: 186 GGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 168 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 227
Query: 244 LQAYVTGEGPVENLAKHLSDPFANN 268
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 228 VQAIVTGKGPIENLADHLTDPVNNN 252
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 148/254 (58%), Gaps = 35/254 (13%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAK----------------WYGPDRRIFLPEGLL 89
+A S ++P K V +SP +E+ + WYGPDR +L
Sbjct: 1 MAASSMALSSPSLAGKAVKLSPSTQEVGRVSMRKTVTKQASSGSPWYGPDRVKYLGP--- 57
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNK 139
E P YLTGE PGDYG+D GLS P+ F S+WAMLGA G + PE +
Sbjct: 58 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 117
Query: 140 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 196
G G EAVWFK G+L+ L+Y G I + A+ A +++L+G E YRI G
Sbjct: 118 NGVKFG-EAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGG 176
Query: 197 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 177 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 236
Query: 255 ENLAKHLSDPFANN 268
ENLA HLSDP +N
Sbjct: 237 ENLADHLSDPVNSN 250
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 144/243 (59%), Gaps = 21/243 (8%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
+ V + + K A +K V+V E WYGPDR +L G +P YLTGE P
Sbjct: 6 QSVLVGATAKTALVKGNKRVSVQAAVE----WYGPDRAKWL--GPYSDGAVPSYLTGEFP 59
Query: 104 GDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 153
GDYG+D GLS P+ F K WAMLGA G + PE K+G E+VWF+
Sbjct: 60 GDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRA 119
Query: 154 GALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGP 208
GA + L+Y G I+ + VI++++L+G E YR+ G E D L+PG
Sbjct: 120 GAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDPLYPGES 179
Query: 209 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG+GPVEN A+H++DPF N
Sbjct: 180 FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHIADPFTAN 239
Query: 269 LLT 271
+
Sbjct: 240 AFS 242
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK WA
Sbjct: 50 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLADPVANN 254
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 112/225 (49%), Positives = 140/225 (62%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE F + G G EAVWFK G+ + L+Y G
Sbjct: 91 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 149
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAE 209
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 136/219 (62%), Gaps = 22/219 (10%)
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
L+ WYGP+R +L G +P YLTGE+PGDYG+D GL P +
Sbjct: 238 LSAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHG 295
Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVI 179
WAMLGA G +PE N+F E +WFK GA + LNYFG+ I+ + A++
Sbjct: 296 RWAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAIL 355
Query: 180 A-EIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 232
A +++L+G E YR N G DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNG
Sbjct: 356 ATQVLLMGAVEAYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNG 414
Query: 233 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
RLAM AMLGF+ QA VTGEGPVEN HL DP A+N LT
Sbjct: 415 RLAMVAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLT 453
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 124/209 (59%), Gaps = 21/209 (10%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLG 127
PDR +L G + P YL GE+PGDYG+D GL P + WAMLG
Sbjct: 1 PDRSKWL--GPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLG 58
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 184
A G + PE ++ E VWFK GA + L+Y G ++ ++ + +++L
Sbjct: 59 ALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLL 118
Query: 185 VGGAEYYRITNGL-----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+G AE YR NGL DL D L+PGGPFDPLGLA DPD A LKVKEIKNGRLAMFAM
Sbjct: 119 MGAAEAYRTGNGLGNFGKDL-DSLYPGGPFDPLGLANDPDTLAELKVKEIKNGRLAMFAM 177
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GF++QA VTGE P+ENL+ HL+ PF N
Sbjct: 178 FGFYVQAIVTGESPLENLSAHLASPFTVN 206
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 136/223 (60%), Gaps = 19/223 (8%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ A P + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 37 RKTAGKPAASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 93
Query: 121 SK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 169
+K WAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 94 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 170 -IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLK 225
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 153 LIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELK 212
Query: 226 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 115/226 (50%), Positives = 140/226 (61%), Gaps = 26/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK K + SP WYGPDR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKPKATSGSP-------WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 118 DDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYLG 147
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 148 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 207
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKE+KNGRLAMF+M GFF+QA VTG GP+ENLA HL+DP NN
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGNGPIENLADHLADPVNNN 253
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 136/209 (65%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 143/237 (60%), Gaps = 26/237 (10%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K++ S + SP WYGPDR ++L E P +LTGE PGDY
Sbjct: 37 ARVTMRKSSTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSHLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDP 205
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 206 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 136/220 (61%), Gaps = 19/220 (8%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
A V + + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 39 AAGKVADSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 121 -------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 171
S+WAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIH 154
Query: 172 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 155 AQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 214
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 62 WYGPDRVMYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA +KVKEIKNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSM 237
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPIENLADHLADPVNNN 266
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPIENLADHLADPVTNN 252
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 147/243 (60%), Gaps = 19/243 (7%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
K V S+K A A+ + +A + + WYG DR ++L G S P YLTG
Sbjct: 16 QQLKSVNELSRKVGAGEARVQMMAPKKASTSGSIWYGADRPLYL--GPFSGSP-PSYLTG 72
Query: 101 EVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVW 150
E PGDYG+D GLS P+ F+K WAMLGA G + PE K G G EAVW
Sbjct: 73 EFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKFG-EAVW 131
Query: 151 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHP 205
FK G+ + L+Y G + + A+ A ++VL+G E YR+ G ++ED L+P
Sbjct: 132 FKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVAGGPLGEVEDPLYP 191
Query: 206 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
GG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP
Sbjct: 192 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPT 251
Query: 266 ANN 268
NN
Sbjct: 252 VNN 254
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 149/258 (57%), Gaps = 39/258 (15%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAK--------------------WYGPDRRIFLP 85
+A S ++P KPV ++P ++EL WYGPDR +L
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLG 60
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPE 135
E P YLTGE PGDYG+D GLS P+ F S+WAMLGA G + PE
Sbjct: 61 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 136 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 192
++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 118 LLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 176
Query: 193 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250
I G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 177 IAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 251 EGPVENLAKHLSDPFANN 268
+GP+ENLA HL+DP NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 138/217 (63%), Gaps = 20/217 (9%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS------ 121
V ++YGPDR +L + P YLTGE PGDYG+D GLS P+ F+
Sbjct: 27 VTRAAVEFYGPDRAKWLGP---FSDDTPSYLTGEFPGDYGWDTAGLSADPETFASYRELE 83
Query: 122 ----KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 175
+WAMLGA G + PE +K+ EAVWFK GA + L+Y G + + +
Sbjct: 84 LIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVHAQSI 143
Query: 176 FAVI-AEIVLVGGAEYYRITNG---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 231
A++ ++VL+GGAE +R+ G DL DKLHPGG FDPLGLA DPD F+ LKVKEIKN
Sbjct: 144 LAILGCQVVLMGGAEAFRVNGGPLGEDL-DKLHPGGAFDPLGLADDPDTFSELKVKEIKN 202
Query: 232 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GRLAMF+M GFF+QA VTG+GPVEN A+H++DP +N
Sbjct: 203 GRLAMFSMFGFFVQAIVTGKGPVENWAEHIADPSGSN 239
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 112/225 (49%), Positives = 140/225 (62%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KP + S + WYGPDR +L E P YLTGE P DYG+D GLS P+
Sbjct: 41 KAKPASSS------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPSDYGWDTAGLSADPE 91
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE F + G G EAVWFK GA + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGN 150
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAE 210
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 136/209 (65%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 149/258 (57%), Gaps = 39/258 (15%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAK--------------------WYGPDRRIFLP 85
+A S ++P KPV ++P ++EL WYGPDR +L
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKAATTKKVASSGSPWYGPDRVKYLG 60
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPE 135
E P YLTGE PGDYG+D GLS P+ F S+WAMLGA G + PE
Sbjct: 61 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 136 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 192
++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 118 LLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 176
Query: 193 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250
I G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 177 IAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 251 EGPVENLAKHLSDPFANN 268
+GP+ENLA HL+DP NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 140/224 (62%), Gaps = 25/224 (11%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 169
F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 170 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 224
I + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 150 SLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 225 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 136/209 (65%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 145/244 (59%), Gaps = 22/244 (9%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
S KPV S+K + A+ + V ++ + WYG DR +L E P YLT
Sbjct: 16 SLLKPVNELSRKVGSSEARVTMRRTVKSTSDSI--WYGADRPKYLGP---FSGETPSYLT 70
Query: 100 GEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAV 149
GE GDYG+D GLS P+ F++ WAMLGA G + PE K G G EAV
Sbjct: 71 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAV 129
Query: 150 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLH 204
WFK GA + L+Y G + + A+ A ++VL+G E YR+ G ++ D ++
Sbjct: 130 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVAGGPLGEITDPIY 189
Query: 205 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP
Sbjct: 190 PGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 249
Query: 265 FANN 268
ANN
Sbjct: 250 VANN 253
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/266 (45%), Positives = 154/266 (57%), Gaps = 33/266 (12%)
Query: 24 LNVSSAVRTSAPGASNPSTFKP------VALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
+ SS TS A P P VA F+ +K A +K VA S + WYG
Sbjct: 1 MAASSMALTSPALAGKPVKLTPSSQELGVAKFTMRKGA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR +L E P YLTGE PGDYG+D GLS P+ F S+WAMLG
Sbjct: 53 PDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 109
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 184
A G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 168
Query: 185 VGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GF
Sbjct: 169 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 228
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANN 268
F+QA VTG+GP+ENLA HL+DP NN
Sbjct: 229 FVQAIVTGKGPLENLADHLADPVNNN 254
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 140/224 (62%), Gaps = 25/224 (11%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 169
F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 170 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 224
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 150 SLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 225 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 136/217 (62%), Gaps = 19/217 (8%)
Query: 67 PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK---- 122
P + WYGPDR +L G L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 41 PAASSGSPWYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 123 ------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 174
WAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 156
Query: 175 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 231
+ A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 157 ILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 216
Query: 232 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 143/226 (63%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ S + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSS------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LGFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 LGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 141/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 SKAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 209
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 141/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 SKAKPVSSGSL------WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 153
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA
Sbjct: 154 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFA 213
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 48 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 126/283 (44%), Positives = 159/283 (56%), Gaps = 46/283 (16%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
M + A S+PA M G P+ VS A + F + +K AA P
Sbjct: 1 MTATMALSSPA-------MAGTPVKVSRA-----------TPFGEGRITMRKTAAKPK-- 40
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
V+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 41 -------VSASGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETF 90
Query: 121 SK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 169
+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 170 -IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLK 225
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 150 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELK 209
Query: 226 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 210 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 151/265 (56%), Gaps = 28/265 (10%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P S F + +K A P KP A + WYG
Sbjct: 1 MAAATMALTSRALVGKPATSTRDVFGEGRITMRKTAGKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGA 128
DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K WAMLGA
Sbjct: 52 DRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 185
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLM 167
Query: 186 GGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 168 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 227
Query: 244 LQAYVTGEGPVENLAKHLSDPFANN 268
+QA VTG+GPVENLA HL+DP NN
Sbjct: 228 VQAIVTGKGPVENLADHLADPVNNN 252
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 141/237 (59%), Gaps = 26/237 (10%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F+K WAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 205
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LGLA DPD FA LKVKEIKNGRL MF+M GFF+QA VTG+GP+E+LA HL+DP NN
Sbjct: 206 LGLADDPDAFAELKVKEIKNGRLTMFSMFGFFVQAIVTGKGPIEDLADHLADPVNNN 262
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 141/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 SKAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 142/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 60 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 110
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 111 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 169
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 170 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 229
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 230 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 275
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/225 (49%), Positives = 140/225 (62%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 210
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 132/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 31 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 88
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G I PE K G G EAVWFK GA + LNY G I + A +A
Sbjct: 89 AMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAF 147
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 148 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 207
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 208 MFGFFVQAIVTGKGPIQNLDDHLANPTAVN 237
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 147/243 (60%), Gaps = 19/243 (7%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
KPV S+K A A+ + +A + WYG DR ++L G S P YL+G
Sbjct: 15 QQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYL--GPFSGSP-PSYLSG 71
Query: 101 EVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVW 150
E PGDYG+D GLS P+ F S+WAMLGA G + PE K G G EAVW
Sbjct: 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVW 130
Query: 151 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHP 205
FK G+ + L+Y G + + A+ A +++L+G E YR+ G ++ED ++P
Sbjct: 131 FKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYP 190
Query: 206 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
GG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP
Sbjct: 191 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPA 250
Query: 266 ANN 268
NN
Sbjct: 251 VNN 253
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 140/233 (60%), Gaps = 26/233 (11%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F+K WAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 202
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 203 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 139/224 (62%), Gaps = 25/224 (11%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 169
F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNP 149
Query: 170 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 224
I + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA L
Sbjct: 150 SLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 209
Query: 225 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 152/265 (57%), Gaps = 28/265 (10%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P KP A + WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGA 128
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K WAMLGA
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 185
G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 167
Query: 186 GGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 168 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 227
Query: 244 LQAYVTGEGPVENLAKHLSDPFANN 268
+QA VTG+GP+ENLA H++DP NN
Sbjct: 228 VQAIVTGKGPLENLADHIADPVNNN 252
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/226 (50%), Positives = 142/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K VA S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVASS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 45 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 101
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 160
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 161 VLLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 220
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 221 FGFFVQAIVTGKGPIENLADHLADPVTNN 249
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/246 (47%), Positives = 151/246 (61%), Gaps = 28/246 (11%)
Query: 39 NPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEY 97
NPS+ + A F+ +K+A +K VA S + WYGPDR +L E P Y
Sbjct: 24 NPSSQELGAARFTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGESPSY 72
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPE 147
LTGE PGDYG+D GLS P+ FSK WAMLGA G + PE ++ G G E
Sbjct: 73 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-E 131
Query: 148 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDK 202
AVWFK G+ + L+Y G + + A+ A +++L+G E YRI G ++ D
Sbjct: 132 AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP 191
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+
Sbjct: 192 LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 251
Query: 263 DPFANN 268
DP NN
Sbjct: 252 DPVNNN 257
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 47 WYGPDRVKYLGP---FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPELLSKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQ 162
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 223 FGFFVQAIVTGKGPLENLSDHLADPVANN 251
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 140/224 (62%), Gaps = 25/224 (11%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 169
F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 170 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 224
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 150 SLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 225 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L G L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 142/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 140/226 (61%), Gaps = 26/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK K V+ SP WYGPDR +L E P YL+GE PGDYG+D GLS P
Sbjct: 6 AKPKTVSSSP-------WYGPDRVKYLGP---FSGEAPSYLSGEFPGDYGWDTAGLSADP 55
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 56 ETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLG 114
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A +++L+G E YRI G ++ED L+PGG FDPLGLA DP+ FA
Sbjct: 115 NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVEDPLYPGGSFDPLGLADDPEAFA 174
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+ A VTG+GP+ENLA HL+DP NN
Sbjct: 175 ELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNN 220
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 56 WYGPDRVKYLGP---FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 112
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 113 MLGALGCVFPELLSKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQ 171
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 172 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSM 231
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 232 FGFFVQAIVTGKGPLENLSDHLADPVANN 260
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 17 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 73
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +
Sbjct: 74 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQ 132
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 133 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 192
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 193 FGFFVQAIVTGKGPIENLADHIADPVNNN 221
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 142/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 36 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 87 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 145
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 146 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 205
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 143/243 (58%), Gaps = 22/243 (9%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S KPV S+K A+ V++ + + WYG DR FL E P YL G
Sbjct: 16 SLLKPVNELSRKVGTSEAR---VSMRKSSGSDSIWYGADRPKFLGP---FSGETPSYLNG 69
Query: 101 EVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVW 150
E GDYG+D GLS P+ F++ WAMLGA G + PE K G G EAVW
Sbjct: 70 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFG-EAVW 128
Query: 151 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHP 205
FK GA + L+Y G + + A+ A +++L+G E YR+ G ++ D ++P
Sbjct: 129 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPIYP 188
Query: 206 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
GG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP
Sbjct: 189 GGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 248
Query: 266 ANN 268
ANN
Sbjct: 249 ANN 251
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 224 FGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 159/282 (56%), Gaps = 46/282 (16%)
Query: 2 ASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSK 61
A+ A S+PA M G P+ VS A + F + +K AA P
Sbjct: 3 AATMALSSPA-------MAGTPVKVSRA-----------TPFGEGRITMRKTAAKPK--- 41
Query: 62 PVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 121
V+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 42 ------VSASGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFA 92
Query: 122 K----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 169
K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 93 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 151
Query: 170 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 226
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 152 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKV 211
Query: 227 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 253
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 165
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK WA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 135/214 (63%), Gaps = 19/214 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
S V+ + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 46 SVVSASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 102
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 173
WAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 103 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQ 161
Query: 174 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 230
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIK
Sbjct: 162 SILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIK 221
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 151/258 (58%), Gaps = 22/258 (8%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLP 85
+++ T + + + K + S+K A+ V + + + WYG DR +L
Sbjct: 1 MAACTATHSTALAGQTALKSINELSRKVGNVQAR---VTMRKASSSDSIWYGADRPKYL- 56
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPE 135
G L E P YLTGE GDYG+D GLS P+ F++ WAMLGA G + PE
Sbjct: 57 -GPLS-GETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPE 114
Query: 136 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYR 192
K G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 115 LLAKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYR 173
Query: 193 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250
+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 174 VAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 233
Query: 251 EGPVENLAKHLSDPFANN 268
+GP+ENL+ HL+DP ANN
Sbjct: 234 KGPLENLSDHLADPVANN 251
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 131/205 (63%), Gaps = 19/205 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 171 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 230
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDP 264
GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 231 FGFFVQAIVTGKGPIENLADHLADP 255
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 142/243 (58%), Gaps = 21/243 (8%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S+ P L S K KP + + + WYGP+R +FL G E P YLTG
Sbjct: 8 SSLAPRCLASTVKVEARRTVKPASKASTPDSF--WYGPERPLFL--GAF-TGEPPSYLTG 62
Query: 101 EVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVW 150
E PGDYG+D GLS P+ F ++WAMLGA G I PE K G G EAVW
Sbjct: 63 EFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFG-EAVW 121
Query: 151 FKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHP 205
FK GA + L+Y G + N+V + +++L+G E YR+ G E D L+P
Sbjct: 122 FKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYP 181
Query: 206 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
G FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL HLS+P
Sbjct: 182 GESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPT 241
Query: 266 ANN 268
NN
Sbjct: 242 VNN 244
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VILMGAVEGYRIAGGPPGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPIENLADHLADPVNNN 253
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/226 (50%), Positives = 140/226 (61%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKPKPAASG------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 84
Query: 118 DDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 85 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 143
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 144 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 203
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 204 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 140/229 (61%), Gaps = 22/229 (9%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTGE PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIARNAVEWYGPDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLS 64
Query: 115 KKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 164
P+ F ++WAMLGA G + PE +K+ E+VWFK G+ + L+
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLD 124
Query: 165 YFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPD 219
Y G + + A++ ++VL+G E YR+ G E D LHPG FDPLGLA DPD
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPD 184
Query: 220 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
FA LKVKEIKNGRLAMF+M GF++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 185 TFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 138/222 (62%), Gaps = 22/222 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 153
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A +++L+G E YRI G + D ++PGG FDPLGLA DPD FA
Sbjct: 154 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGXVTDPIYPGGSFDPLGLADDPDAFA 213
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK WA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK WA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/257 (45%), Positives = 151/257 (58%), Gaps = 21/257 (8%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+SA++ SA S + KP KK + + + + + WYGPDR +L
Sbjct: 3 TSAIQQSAFAGS--AALKPQNELVKKTGSFTGGRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEA 136
+ P YLTGE PGDYG+D GLS P+ F S+WAMLGA G + PE
Sbjct: 61 ---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEV 117
Query: 137 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 193
+K G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+
Sbjct: 118 LSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRV 176
Query: 194 TNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
G E DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+
Sbjct: 177 GGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 252 GPVENLAKHLSDPFANN 268
GP+ENL HLSDP ANN
Sbjct: 237 GPIENLFDHLSDPVANN 253
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 142/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/234 (49%), Positives = 141/234 (60%), Gaps = 27/234 (11%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S +K A P K P SP WYGPDR +L E P YLTGE PGDYG+D
Sbjct: 21 SMRKTAAPKKVAPSG-SP-------WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWD 69
Query: 110 PFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 159
GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA +
Sbjct: 70 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFS 128
Query: 160 GNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGL 214
L+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLGL
Sbjct: 129 EGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 188
Query: 215 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
A DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA L+DP ANN
Sbjct: 189 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADRLADPVANN 242
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQ 163
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E DKL+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGLIEGYRVGGGPLGEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 224 FGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRVKYLSP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 135/214 (63%), Gaps = 19/214 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
S V+ + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 43 SVVSASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 99
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 173
WAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 100 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQ 158
Query: 174 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 230
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIK
Sbjct: 159 SILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIK 218
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 219 NGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 252
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 145/245 (59%), Gaps = 24/245 (9%)
Query: 42 TFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYL 98
KPV S+K A+ + V+ S ++ + WYG DR FL E P YL
Sbjct: 17 VLKPVNELSRKVGNVEARVTMRRTVSKSAGSDSI--WYGADRPKFLGP---FSGETPSYL 71
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEA 148
TGE GDYG+D GLS P+ F++ WAMLGA G + PE K G G EA
Sbjct: 72 TGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EA 130
Query: 149 VWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKL 203
VWFK GA + L+Y G + + A+ A ++VL+G E YR+ G ++ D +
Sbjct: 131 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI 190
Query: 204 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 263
+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+D
Sbjct: 191 YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLAD 250
Query: 264 PFANN 268
P ANN
Sbjct: 251 PVANN 255
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLTDPVNNN 253
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 131/205 (63%), Gaps = 19/205 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 171 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 230
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDP 264
GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 231 FGFFVQAIVTGKGPIENLADHLADP 255
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMFSM 237
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMFSM 237
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK WA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 151/260 (58%), Gaps = 28/260 (10%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ ++S P A F + +K AA P KP A + WYG DR ++
Sbjct: 1 MAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGADRVLY 51
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFII 133
L G L S P YLTGE PGDYG+D GLS P+ F+K WAMLGA G +
Sbjct: 52 L--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 108
Query: 134 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 190
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 109 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 167
Query: 191 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 168 YRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 227
Query: 249 TGEGPVENLAKHLSDPFANN 268
TG+GP+ENLA H++DP NN
Sbjct: 228 TGKGPLENLADHIADPVNNN 247
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 48 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLG A DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGFADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 138/218 (63%), Gaps = 19/218 (8%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
+V V+ +WYGPDR +L G ++P YLTGE PGDYG+D GLS P+ F
Sbjct: 1 SVRNVSRNAIEWYGPDRPKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 58
Query: 121 -------SKWAMLGAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKN--I 170
++WAMLGA G + PE K+ G +CG E+VWFK G+ + L+Y G +
Sbjct: 59 REQELIHARWAMLGALGCVTPEILAKYAGVSCG-ESVWFKAGSQIFQEGGLDYLGNPSLV 117
Query: 171 PINLVFAVI-AEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVK 227
+ A++ ++VL+G E YR+ G E D LHPG FDPLGLA DPD FA LKVK
Sbjct: 118 HAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVK 177
Query: 228 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
EIKNGRLAMF+M GF++QA VTG+GP+EN A H++DPF
Sbjct: 178 EIKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPF 215
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLVDHLADPVANN 253
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 131/205 (63%), Gaps = 19/205 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 111
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 112 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 171 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSM 230
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDP 264
GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 231 FGFFVQAIVTGKGPIENLADHLADP 255
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGSVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 155/280 (55%), Gaps = 45/280 (16%)
Query: 4 LAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPV 63
+AAS+ SI + M G P+ V S F + +K AA P
Sbjct: 1 MAASTM---SISSTAMAGTPIKVGS--------------FGEGRITMRKTAAKPK----- 38
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
V + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 39 ----VAASGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 91
Query: 121 -------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 171
S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 92 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIH 150
Query: 172 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 151 AQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 210
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 250
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAIEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 62 WYGPDRVLYLGP---FSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ F+ LKVKEIKNGRLAMF+M
Sbjct: 164 VVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFSELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 142/237 (59%), Gaps = 20/237 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A S + +P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P
Sbjct: 374 AASGRKSAAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDP 430
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
++ WAMLGA G + PE G G AVW+K GA + + LNY G
Sbjct: 431 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 490
Query: 168 KNIPIN---LVFAVIAEIVLVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQ 220
I+ +V ++ + ++G E YR G+ D D L+PGGPFDPLGLA DPD
Sbjct: 491 NPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDA 550
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
A LKVKE+KNGRLAM AMLGF++Q VT GPVENL HL+DP ANN+ + SG A
Sbjct: 551 LAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFA 607
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 129/212 (60%), Gaps = 20/212 (9%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK---------- 122
+KWYGP+R +L G L +PEYL GE GDYG+D GL+ P F +
Sbjct: 153 SKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGR 210
Query: 123 WAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAV 178
WAMLG G + PE N FG PE VWFKTGA +L+G +++Y I NL+ +
Sbjct: 211 WAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTL 269
Query: 179 IAEIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
+ E+V AE +R L +DK +PGG FDPLGL+KDP FA KVKE+KNGRLA
Sbjct: 270 VLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGRLA 329
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 267
M AMLG F+QA VTG+ P+ENL+ HL++P N
Sbjct: 330 MLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 361
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 93/149 (62%), Gaps = 7/149 (4%)
Query: 141 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGL 197
G G AVW+K GA + + LNY G I+ +V ++ + ++G E YR G+
Sbjct: 3 GVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGV 62
Query: 198 -DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253
D D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AMLGF++Q VT GP
Sbjct: 63 GDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGP 122
Query: 254 VENLAKHLSDPFANNLLTVISGNAERAPT 282
VENL HL+DP ANN+ + SG A A T
Sbjct: 123 VENLTFHLADPSANNIFSFTSGFAMFAAT 151
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 132/213 (61%), Gaps = 20/213 (9%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
+WYGPDR FL G + PEYLTGE PGDYG+D GLS P F++ W
Sbjct: 27 EWYGPDRPKFL--GPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARW 84
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G ++PE K G VWFK GA + + LNY G I + A +A
Sbjct: 85 AMLGALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAF 144
Query: 181 EIVLVGGAEYYRITNG-----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
++V++G AE +R G L+ D+L+PG FDP+GLA+DPD FA LKVKEIKNGRLA
Sbjct: 145 QVVVMGAAESFRFNGGAPGGFLEGNDRLYPGDQFDPMGLAEDPDTFAELKVKEIKNGRLA 204
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
MF+M GFF+QA VTG+GP+ NL HL+DP NN
Sbjct: 205 MFSMFGFFVQAIVTGQGPIANLDAHLADPSVNN 237
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 139/226 (61%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP + + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 AKAKPASSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 209
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 140/229 (61%), Gaps = 22/229 (9%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTG+ PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIVRNAVEWYGPDRAKWL--GPFSEGDVPSYLTGQFPGDYGWDTAGLS 64
Query: 115 KKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 164
P+ F ++WAMLGA G + PE +K+ E+VWFK G+ + L+
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLD 124
Query: 165 YFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPD 219
Y G + + A++ ++VL+G E YR+ G E D LHPG FDPLGLA DPD
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPD 184
Query: 220 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
FA LKVKEIKNGRLAMF+M GF++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 185 TFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/274 (43%), Positives = 158/274 (57%), Gaps = 30/274 (10%)
Query: 22 NPLNVSSAVRTSAPGASNPSTFKP-VALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDR 80
+PL SA + PG + +++ P +A+F A S + +P ++ L++WYGPDR
Sbjct: 550 SPLENLSA-HLANPGVNFWTSYAPTLAMF--------AASGRKSAAPKSDNLSQWYGPDR 600
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAG 130
+L G L E+P YLTGE+PGDYG+D GL P ++ WAMLGA G
Sbjct: 601 AKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG 657
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGG 187
+ PE G G AVW+K GA + + LNY G I+ +V ++ + ++G
Sbjct: 658 VVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGA 717
Query: 188 AEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
E YR G+ D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AMLGF+
Sbjct: 718 VEAYRYGGGVGDSGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFY 777
Query: 244 LQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
+Q VT GPVENL HL+DP ANN+ + SG A
Sbjct: 778 VQPLVTKAGPVENLTFHLADPSANNIFSFTSGFA 811
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 141/234 (60%), Gaps = 20/234 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++
Sbjct: 125 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 181
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 173
WAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 182 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 241
Query: 174 -LVFAVIAEIVLVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+V ++ + ++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE
Sbjct: 242 SVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKE 301
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 282
+KNGRLAM AMLGF++Q VT GPVENL HL+DP ANN+ + SG A A T
Sbjct: 302 LKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFAMFAAT 355
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 136/230 (59%), Gaps = 26/230 (11%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
SP+N K YGPDR +L G +PEYLTGE+PGDYG+D GL P ++
Sbjct: 832 SPLN----KLYGPDRVKWL-GGF--TGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRV 884
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 173
WAMLG G PE N++G E VWFK GA + + LNY G+ I+
Sbjct: 885 AQVIHGRWAMLGVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQ 944
Query: 174 -LVFAVIAEIVLVGGAEYYRITN-----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 227
+V ++ +VL+G E YR G DL D L+PGGPFDPLGLA DP+ F LKVK
Sbjct: 945 SVVLTFLSTLVLMGAVEAYRSAGSVGDFGADL-DPLYPGGPFDPLGLADDPEAFLELKVK 1003
Query: 228 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
E+KNGRLAM A+ GFF+Q +TG+GPVEN HL+DPF NN+ + G A
Sbjct: 1004 EVKNGRLAMVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIFQLTPGFA 1053
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 129/212 (60%), Gaps = 20/212 (9%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK---------- 122
+KWYGP+R +L G L +PEYL GE GDYG+D GL+ P F +
Sbjct: 357 SKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGR 414
Query: 123 WAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAV 178
WAMLG G + PE N FG PE VWFKTGA +L+G +++Y I NL+ +
Sbjct: 415 WAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTL 473
Query: 179 IAEIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
+ E+V AE +R L +DK +PGG FDPLGL+KDP FA KVKE+KNGRLA
Sbjct: 474 VLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGRLA 533
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 267
M AMLG F+QA VTG+ P+ENL+ HL++P N
Sbjct: 534 MLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 565
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 77/115 (66%), Gaps = 6/115 (5%)
Query: 173 NLVFAVIAEIVLVGGAEYYRITN-----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 227
++V ++ +VL+G E YR G DL D L+PGGPFDPLGLA DP+ F LKVK
Sbjct: 5 SVVLTFLSTLVLMGAVEAYRSAGSVGDFGADL-DPLYPGGPFDPLGLADDPEAFLELKVK 63
Query: 228 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 282
E+KNGRLAM A+ GF +Q +TG+GPVEN HL+DPF NNL + SG A A +
Sbjct: 64 EVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLFQLTSGFAMLATS 118
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 148/261 (56%), Gaps = 24/261 (9%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK---WYGPDRRI 82
+++A + + S F+PV S+K S+ VN+ WYG DR
Sbjct: 1 MAAATAMHSTALAGQSLFQPVNELSRKVG--NVDSRVTMRRTVNKSAGSDSIWYGADRPK 58
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFI 132
FL E P YL GE GDYG+D GLS P+ F++ WAMLGA G +
Sbjct: 59 FLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCL 115
Query: 133 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAE 189
PE K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E
Sbjct: 116 TPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 174
Query: 190 YYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 247
YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 175 GYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAI 234
Query: 248 VTGEGPVENLAKHLSDPFANN 268
VTG+GP+ENL HL+DP ANN
Sbjct: 235 VTGKGPLENLNDHLADPVANN 255
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 149/259 (57%), Gaps = 20/259 (7%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A+ + G + S KPV S++ A+ + VS + WYG DR FL
Sbjct: 1 MAAAIAMHSTGLAGQSLLKPVNELSRRVGNVDARVTMRRTVSKSARSDSIWYGADRPKFL 60
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIP 134
E P YL GE GDYG+D GLS + F++ WAMLGA G + P
Sbjct: 61 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTP 117
Query: 135 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYY 191
E K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E Y
Sbjct: 118 ELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 176
Query: 192 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
R+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 177 RVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 250 GEGPVENLAKHLSDPFANN 268
G+GP+ENL HL+DP ANN
Sbjct: 237 GKGPLENLNDHLADPVANN 255
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 132/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 31 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 88
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G I PE K G G EAVWFK GA + LNY G I + A +A
Sbjct: 89 AMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAF 147
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 148 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 207
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 208 MFGFFVQAIVTGKGPIQNLDDHLANPTAVN 237
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 153/260 (58%), Gaps = 28/260 (10%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
L+ SS R + + F + +K AA K+K V+ + WYG DR ++
Sbjct: 8 LSSSSFARKMVENIPSSALFGEARVTMRKTAA---KAKQVSSG------SPWYGADRVLY 58
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFII 133
L G L E P YLTGE PGDYG+D GLS P+ FSK WAMLGA G +
Sbjct: 59 L--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115
Query: 134 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 190
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 116 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 191 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA V
Sbjct: 175 YRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIV 234
Query: 249 TGEGPVENLAKHLSDPFANN 268
TG+GP+ENLA H++DP NN
Sbjct: 235 TGKGPLENLADHIADPINNN 254
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 138/223 (61%), Gaps = 21/223 (9%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP A S + WYGPDR +FL E P YLTGE PGDYG+D GLS P+ F
Sbjct: 29 KPAAKSSTPDSF--WYGPDRPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETF 83
Query: 121 ----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 169
++WAMLGA G I PE +G G E+VWFK GA + L+Y G
Sbjct: 84 KRYRELELIHARWAMLGALGCIFPELLGSYGVPFG-ESVWFKAGAQIFQEGGLDYLGNPS 142
Query: 170 -IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLK 225
+ + A++ +++L+G E YR+ G E DKL+PGG FDPLGLA DPD FA LK
Sbjct: 143 LVHAQSILAILGTQVILMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELK 202
Query: 226 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
VKEIKNGRLAMF+M GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 203 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGVNN 245
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 134/213 (62%), Gaps = 24/213 (11%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 28 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 85
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA- 180
AMLGA G I PE K G G EAVWFK G+ + LNY G NLV A +IA
Sbjct: 86 AMLGALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNE---NLVHAQSIIAT 141
Query: 181 ---EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLA
Sbjct: 142 LAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLA 201
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
MF+M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 202 MFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVN 234
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 137/239 (57%), Gaps = 23/239 (9%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ K+A + A V +WYGPDR FL G + P YLTGE GDYG+
Sbjct: 3 FALKQAVATKAAATRATRQVTRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFAGDYGW 60
Query: 109 DPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
D GLS P F+K WAMLGA G I PE K G G EAVWFK GA +
Sbjct: 61 DTAGLSADPQTFAKYREIEVIHARWAMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIF 119
Query: 159 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL------DLEDKLHPGGPF 209
LNY G + + A +A +++L+G AE YR G DL D L+PGG F
Sbjct: 120 QDGGLNYLGNENLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDL-DSLYPGGAF 178
Query: 210 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
DPLGLA DPD A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 179 DPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNN 237
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 153/260 (58%), Gaps = 28/260 (10%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
L+ SS R + + F + +K AA K+K V+ + WYG DR ++
Sbjct: 8 LSSSSFARKMVENIPSSALFGEARVTMRKTAA---KAKQVSSG------SPWYGADRVLY 58
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFII 133
L G L E P YLTGE PGDYG+D GLS P+ FSK WAMLGA G +
Sbjct: 59 L--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115
Query: 134 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEY 190
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 116 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQVVLMGAVEG 174
Query: 191 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA V
Sbjct: 175 YRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIV 234
Query: 249 TGEGPVENLAKHLSDPFANN 268
TG+GP+ENLA H++DP NN
Sbjct: 235 TGKGPLENLADHIADPINNN 254
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 47 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 162
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 151/261 (57%), Gaps = 24/261 (9%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRI 82
+++A + + S KPV S+K A+ + V+ S ++ + WYG DR
Sbjct: 1 MAAATAMHSTALAGQSLVKPVNELSRKVGNVEARVTMRRTVSKSAGSDSI--WYGADRPK 58
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFI 132
FL E P YL GE GDYG+D GLS P+ F++ WAMLGA G +
Sbjct: 59 FLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCL 115
Query: 133 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAE 189
PE K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E
Sbjct: 116 TPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 174
Query: 190 YYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 247
YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 175 GYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAI 234
Query: 248 VTGEGPVENLAKHLSDPFANN 268
VTG+GP+ENL HL+DP ANN
Sbjct: 235 VTGKGPLENLNDHLADPVANN 255
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 122/268 (45%), Positives = 155/268 (57%), Gaps = 33/268 (12%)
Query: 16 AKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKW 75
A L +P AV+ S P AS + V++ +K AA P S SP W
Sbjct: 4 ATMALSSPSFAGQAVKLS-PSASEITGNGRVSM--RKTAAKPVSSS----SP-------W 49
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAM 125
YGPDR +L E P YLT E PGDYG+D GLS P+ F+K WAM
Sbjct: 50 YGPDRVKYLGP---FSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 126 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 182
LGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++
Sbjct: 107 LGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 183 VLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
+L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 ILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 225
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 151/265 (56%), Gaps = 27/265 (10%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M G + ++S P ++ + +K A AK KP A + WYG
Sbjct: 1 MAGATMALTSRALVGKPATTSTRDVFGEGRITMRKTA--AKPKPAASG------SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGA 128
DR ++L E P YLTGE PGDYG+D GLS P+ F+K WAMLGA
Sbjct: 53 DRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 109
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 185
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLM 168
Query: 186 GGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 169 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 228
Query: 244 LQAYVTGEGPVENLAKHLSDPFANN 268
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 229 VQAIVTGKGPLENLADHLADPVNNN 253
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G E VWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EVVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 150/252 (59%), Gaps = 18/252 (7%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
ALF KKK AK+ P + + AKWYGPDR +LP GLLD ++IP Y+ GE+ GDY
Sbjct: 32 ALFGKKKGT--AKATPKKAAAPADGAAKWYGPDRPKYLPTGLLDPADIPAYMNGELAGDY 89
Query: 107 GYDPFGLSKK-------PDD--FSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 157
GYDP GL K P + +WAMLG G ++PE G AVW+ +GA+L
Sbjct: 90 GYDPLGLGNKGGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVL 149
Query: 158 LD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLEDKLHPGGP-FDP 211
LD TL + G P+ L AVI E+ + E YR G L D L+PGG FDP
Sbjct: 150 LDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENYRYQQDGPWGTGL-DPLYPGGKYFDP 208
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
LGLA DP + LKVKEIKNGRLAM A LGF +Q +VT EGP N +KHL+DPF N LT
Sbjct: 209 LGLASDPSKADELKVKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFLT 268
Query: 272 VISGNAERAPTL 283
++ +ER PTL
Sbjct: 269 ILGSGSERVPTL 280
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 135/210 (64%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVTDPVANN 251
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 114/226 (50%), Positives = 141/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K VA S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVASS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A + VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQAVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 144/242 (59%), Gaps = 22/242 (9%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF + SKK +++ +P + WYGPDR FL + P YLTGE
Sbjct: 8 TFVGTQVASKKMVTSMRRTQKKGSAPD----SVWYGPDRPQFLGP---FSGDTPSYLTGE 60
Query: 102 VPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWF 151
PGDYG+D GLS P+ F ++WAMLGA G + PE +K+G E+VWF
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWF 120
Query: 152 KTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNGLDLE--DKLHPG 206
K G+ + L+Y G + + A++ ++VL+G E YR+ G E D L+PG
Sbjct: 121 KAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDPLYPG 180
Query: 207 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 266
FDPLGLA DPD FA LK+KEIKNGRLAMF+M GFF+QA VTG+GP+EN A+H++DPF+
Sbjct: 181 DKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFFVQAVVTGKGPIENWAEHVADPFS 240
Query: 267 NN 268
N
Sbjct: 241 VN 242
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK WA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 167 VVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 138/225 (61%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAE 210
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLVDHLADPVNNN 255
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 86 WYGPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 142
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 143 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 201
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 202 VVLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 261
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 262 FGFFVQAIVTGKGPLENLADHLADPVNNN 290
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 135/210 (64%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 149/259 (57%), Gaps = 22/259 (8%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A + + S KPV S+K A+ S S ++ + WYG DR +L
Sbjct: 1 MAAATAMHSTALAGQSLLKPVNELSRKVGNVEARISMRKTASKSSDSI--WYGADRPKYL 58
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIP 134
E P YL GE GDYG+D GLS P+ F++ WAMLGA G + P
Sbjct: 59 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTP 115
Query: 135 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 191
E K G G EAVWFK GA + L+Y G + + A+ A +++L+G E Y
Sbjct: 116 ELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGY 174
Query: 192 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
R+ G D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 250 GEGPVENLAKHLSDPFANN 268
G+GP+ENL HL+DP ANN
Sbjct: 235 GKGPLENLNDHLADPVANN 253
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 136/223 (60%), Gaps = 19/223 (8%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K V + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 2 KSATTKKVASSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETF 58
Query: 121 SK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 169
SK WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 59 SKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPS 117
Query: 170 -IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLK 225
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 118 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELK 177
Query: 226 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
VKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 178 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 220
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 33 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 89
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 90 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 148
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 149 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 208
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 FGFFVQAIVTGKGPLENLADHLADPVNNN 237
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 140/233 (60%), Gaps = 26/233 (11%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KAA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKAATKKVSVSASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F+K WAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 202
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
L LA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 203 LRLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 139/229 (60%), Gaps = 20/229 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++
Sbjct: 36 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 92
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 173
WAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 93 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 152
Query: 174 -LVFAVIAEIVLVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+V ++ + ++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE
Sbjct: 153 SVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKE 212
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
+KNGRLAM AMLGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 213 LKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 261
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 13/100 (13%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----- 120
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P
Sbjct: 271 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 327
Query: 121 -----SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 155
++WAMLGA G + PE G G AVW+K GA
Sbjct: 328 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGA 367
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 134/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLSKNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNG---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E YR+ G DL DKL+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 164 VVLMGFVEGYRVGGGPLGEDL-DKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFS 222
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GPVENL H++DP ANN
Sbjct: 223 MFGFFVQAIVTGKGPVENLVDHIADPVANN 252
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 113/210 (53%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K W
Sbjct: 48 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRW 103
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 104 AMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 162
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 163 QVVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFS 222
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 223 MFGFFVQAIVTGKGPIENLYDHLADPVANN 252
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L G L E P YLTGE GDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA +KVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCIFPELLSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VVLMGFIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 224 FGFFVQAIVTGKGPLENLSDHLADPVANN 252
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 142/243 (58%), Gaps = 19/243 (7%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S F+ L SK ++ S VS + + WYG DR +L E P YL G
Sbjct: 16 SLFRFNELSSKVGSSQARVSMRKTVSKSSGSDSIWYGADRPKWLGP---FSGETPSYLNG 72
Query: 101 EVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVW 150
E GDYG+D GLS P+ F++ WAMLGA G + PE K G G EAVW
Sbjct: 73 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVW 131
Query: 151 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHP 205
FK GA + L+Y G + + A+ A +++L+G E YR+ G D+ D ++P
Sbjct: 132 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGDVTDPIYP 191
Query: 206 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
GG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP
Sbjct: 192 GGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 251
Query: 266 ANN 268
ANN
Sbjct: 252 ANN 254
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK WA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 73 MLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 132 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 191
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 192 FGFFVQAIVTGKGPLENLADHLADPVNNN 220
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 112/242 (46%), Positives = 141/242 (58%), Gaps = 19/242 (7%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF AL KA + P + +WYGP+R +L G + P YLTGE
Sbjct: 6 TFSRKALQVSAKATGKKGTSKTVAKPAPSGI-EWYGPNRAKWL--GPYSENATPAYLTGE 62
Query: 102 VPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWF 151
PGDYG+D GLS P+ F ++WAMLGA G + PE +K G G EAVWF
Sbjct: 63 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQFG-EAVWF 121
Query: 152 KTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPG 206
K GA + L+Y G + N+V + +++L+G E YR+ G E D L+PG
Sbjct: 122 KAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPG 181
Query: 207 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 266
FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL++P
Sbjct: 182 ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAV 241
Query: 267 NN 268
NN
Sbjct: 242 NN 243
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 167 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVK IKNGRLAMF+M
Sbjct: 167 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 46 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 102
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 103 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 161
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 162 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 221
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 222 FGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 142/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 6 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 56
Query: 118 DDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 57 ETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 115
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 116 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 175
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 176 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 221
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK WA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLGDHITDPVNNN 254
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR FL + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGADRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 105 MLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA H++DP ANN
Sbjct: 224 FGFFVQAIVTGKGPIENLADHIADPVANN 252
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 144/235 (61%), Gaps = 27/235 (11%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +KAA +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKAA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA +
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 159 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLG 213
L+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLG
Sbjct: 113 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 172
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 173 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/270 (45%), Positives = 155/270 (57%), Gaps = 31/270 (11%)
Query: 14 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELA 73
+ A L +P V AV+ AP AS F + +K A P KPV+ +
Sbjct: 1 MAASMALSSPSLVGKAVKL-APAASE--VFGEGRVSMRKTAGKP---KPVSSG------S 48
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGPDR +L E P YLTGE GDYG+D GLS P+ F+K W
Sbjct: 49 PWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARW 105
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 106 AMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 181 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 165 QVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 MFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G E+VWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 135/214 (63%), Gaps = 19/214 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L G L E P YLTGE GDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYV 258
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 50 WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 141/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKAKQVSSS------SPWYGSDRVLYL--GSLS-GEPPSYLTGEFPGDYGWDTAGLSADP 84
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWF G+ + L+Y G
Sbjct: 85 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFMAGSQIFSEGGLDYLG 143
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 144 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 203
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 204 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 249
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 39 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 95
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 96 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 154
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 155 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 214
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 FGFFVQAIVTGKGPLENLADHLADPVNNN 243
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 141/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ S + WYGP+R +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 SKAKPVSSS------SPWYGPNRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLG 149
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YR+ ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFA 209
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 131/205 (63%), Gaps = 19/205 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 111
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L++ G I + A+ A +
Sbjct: 112 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWACQ 170
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 171 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSM 230
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDP 264
GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 231 FGFFVQAIVTGKGPIENLADHLADP 255
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF++
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSI 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 139/226 (61%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP + + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 6 AKAKPASSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 56
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 57 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 115
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 116 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 175
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 176 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 221
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 139/229 (60%), Gaps = 20/229 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++
Sbjct: 88 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 144
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 173
WAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 145 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 204
Query: 174 -LVFAVIAEIVLVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+V ++ + ++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE
Sbjct: 205 SVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKE 264
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
+KNGRLAM AMLGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 265 LKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 313
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 136/229 (59%), Gaps = 25/229 (10%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++
Sbjct: 323 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 379
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 173
WAML + PE G G AVW+K GA + + LNY G I+
Sbjct: 380 AEVIHARWAML-----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 434
Query: 174 -LVFAVIAEIVLVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+V ++ + ++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE
Sbjct: 435 SVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKE 494
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
+KNGRLAM AMLGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 495 LKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 543
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 60/77 (77%)
Query: 201 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 260
D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AMLGF++Q VT GPVENL H
Sbjct: 2 DTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFH 61
Query: 261 LSDPFANNLLTVISGNA 277
L+DP +NN+ + SG A
Sbjct: 62 LADPSSNNIFSFTSGFA 78
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 134/213 (62%), Gaps = 24/213 (11%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 11 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 68
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA- 180
AMLGA G I PE K G G EAVWFK G+ + LNY G NLV A +IA
Sbjct: 69 AMLGALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNE---NLVHAQSIIAT 124
Query: 181 ---EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLA
Sbjct: 125 LAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLA 184
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
MF+M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 185 MFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVN 217
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VLLMGAVEGYRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 144/235 (61%), Gaps = 27/235 (11%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K A AK+KPV+ + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 33 FTMRKTA--AKAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEKPGDYGW 81
Query: 109 DPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
D GLS P+ F+K WA+L G + PE ++ G G EAVWFK G+ +
Sbjct: 82 DTAGLSADPETFAKNRELEVIHCRWAILERLGCVFPELLSRNGVKFG-EAVWFKVGSQIF 140
Query: 159 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLG 213
L+Y G + + A+ A ++VL+G E YRI G ++ D L+PGG FDPLG
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 200
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 201 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 135/211 (63%), Gaps = 19/211 (9%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SK 122
++WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+
Sbjct: 47 SQWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 103
Query: 123 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA 180
WAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 104 WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162
Query: 181 -EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
+++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF
Sbjct: 163 VQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMF 222
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP++NLA H++DP NN
Sbjct: 223 SMFGFFVQAIVTGKGPLKNLADHIADPVNNN 253
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 134/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGP+R +FL E P YLTGE PGDYG+D GLS P+ F ++WA
Sbjct: 34 WYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 90
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE +G G EAVWFK GA + L+Y G + + + A++ +
Sbjct: 91 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQ 149
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G E DKL+PGG FDPLGLA DPD F+ LKVKEIKNGRLAMF+M
Sbjct: 150 VLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFSELKVKEIKNGRLAMFSM 209
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 210 FGFFVQAIVTGKGPLQNLSDHLANPGTNN 238
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/226 (50%), Positives = 141/226 (62%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G I PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGSIFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H+ DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIVDPVNNN 254
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 140/225 (62%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K KPV+ S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 3 KPKPVSSS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 53
Query: 119 DF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 54 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 112
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 113 PSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 172
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 173 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 148/259 (57%), Gaps = 20/259 (7%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A + + S KPV S+K A+ S + S + WYG DR +L
Sbjct: 1 MAAATAMHSTALAGQSLLKPVNELSRKVGNVEARVSMRKSASKSAASDSIWYGADRPKYL 60
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIP 134
E P YL GE GDYG+D GLS P+ F++ WAMLGA G + P
Sbjct: 61 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTP 117
Query: 135 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 191
E K G G EAVWFK GA + L+Y G + + A+ A +++L+G E Y
Sbjct: 118 ELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGY 176
Query: 192 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
R+ G D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 177 RVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 250 GEGPVENLAKHLSDPFANN 268
G+GP+ENL HL+DP ANN
Sbjct: 237 GKGPLENLNDHLADPVANN 255
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGP+R +FL E P YLTGE PGDYG+D GLS P+ F ++WA
Sbjct: 41 WYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 97
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE +G G EAVWFK GA + L+Y G + + A++ +
Sbjct: 98 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQ 156
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G E DKL+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 157 VLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 216
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 217 FGFFVQAIVTGKGPLQNLSDHLANPGTNN 245
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 145/246 (58%), Gaps = 24/246 (9%)
Query: 41 STFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEY 97
S KPV S+K + A+ + V S ++ + WYG DR +L E P Y
Sbjct: 16 SLLKPVNELSRKVGSSQARVTMRRTVNKSAGSDSI--WYGADRPKYLGP---FSGETPSY 70
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPE 147
L GE GDYG+D GLS P+ F++ WAMLGA G + PE K G G E
Sbjct: 71 LNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKFG-E 129
Query: 148 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDK 202
AVWFK GA + L+Y G + + A+ A +++L+G E YR+ G ++ D
Sbjct: 130 AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDP 189
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+
Sbjct: 190 IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLA 249
Query: 263 DPFANN 268
DP ANN
Sbjct: 250 DPVANN 255
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 141/232 (60%), Gaps = 28/232 (12%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTGE PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIARNAVEWYGPDRAKWL--GPFFEGDVPSYLTGEFPGDYGWDTAGLS 64
Query: 115 KKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 164
P+ F ++WAMLGA G + PE +K+ E+VWFK G+ + L+
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLD 124
Query: 165 YFGKN--IPINLVFAVI-AEIVLVGGAEYYRIT-----NGLDLEDKLHPGGPFDPLGLAK 216
Y G + + A++ ++VL+G E YR+ GLD+ LHPG FDPLGLA
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGKGLDV---LHPGEKFDPLGLAD 181
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
DPD FA LKVKEIKNGRLAMF+M GF++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 182 DPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 138/225 (61%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPA 90
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K W MLGA G + PE F + G G EAVWFK G+ + L+Y G
Sbjct: 91 TFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGN 149
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAE 209
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
L+VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 LEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 139/225 (61%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 149
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A ++VL+G E YR+ ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 209
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ + L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVNPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 151/252 (59%), Gaps = 18/252 (7%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
ALF KKK AK+ P + + AKWYGPDR +LP GLLD ++IP Y+ GE+ GDY
Sbjct: 39 ALFGKKKGT--AKATPKKAAAPADGAAKWYGPDRPKYLPTGLLDPADIPAYMNGELAGDY 96
Query: 107 GYDPFGLSKK-------PDD--FSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 157
GYDP GL K P + +WAMLG G ++PE G AVW+ +GA+L
Sbjct: 97 GYDPLGLGNKGGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVL 156
Query: 158 LDGN-TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLEDKLHPGGP-FDP 211
LD + TL + G P+ L AVI E+ + E YR G L D L+PGG FDP
Sbjct: 157 LDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENYRYQQDGPWGTGL-DPLYPGGKYFDP 215
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
LGLA DP + LKVKEIKNGRLAM A LGF +Q +VT EGP N +KHL+DPF N LT
Sbjct: 216 LGLASDPSKADELKVKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFLT 275
Query: 272 VISGNAERAPTL 283
++ +ER PTL
Sbjct: 276 ILGSGSERVPTL 287
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P F S+WA
Sbjct: 46 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWA 102
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 103 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 161
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 162 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 221
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 222 FGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GPV+NL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVQNLYDHVADPVANN 253
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 162
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 138/234 (58%), Gaps = 26/234 (11%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S + K +P SP WYGPDR +L E P YLTGE PGDYG+D
Sbjct: 43 SNRPRTTAGKLRPATSSP-------WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWD 92
Query: 110 PFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 159
GLS P+ F S+WAMLGA G I PE + G G EAVWFK G+ +
Sbjct: 93 TAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGVKFG-EAVWFKAGSQIFS 151
Query: 160 GNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGL 214
L+Y G I + A+ A ++VL+G E YRI G ++ D L+PG FDPLGL
Sbjct: 152 EGGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEITDPLYPGNSFDPLGL 211
Query: 215 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
A DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 212 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 265
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 138/225 (61%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAE 210
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNN 255
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 144/235 (61%), Gaps = 27/235 (11%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 3 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 51
Query: 109 DPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA +
Sbjct: 52 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 110
Query: 159 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLG 213
L+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLG
Sbjct: 111 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 170
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 171 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 225
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 143/227 (62%), Gaps = 27/227 (11%)
Query: 58 AKSKPV-AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK 116
AK+KPV + SP WYG DR ++L G L + P YLTGE PGDYG+D GLS
Sbjct: 39 AKAKPVPSGSP-------WYGADRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSAD 88
Query: 117 PDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 166
P+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y
Sbjct: 89 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
Query: 167 GKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQF 221
G + + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ F
Sbjct: 148 GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 207
Query: 222 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 208 AELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 162
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 142/243 (58%), Gaps = 22/243 (9%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S KPV S++ A A+ V + + WYG DR FL E P YL G
Sbjct: 16 SLLKPVNELSRRVGANEAR---VTMRKSAGSDSIWYGADRPKFLGP---FSGETPSYLNG 69
Query: 101 EVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVW 150
E GDYG+D GLS P+ F++ WAMLGA G + PE K G G EAVW
Sbjct: 70 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVW 128
Query: 151 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHP 205
FK GA + L+Y G + + A+ A +++L+G E YR+ G ++ D ++P
Sbjct: 129 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPIYP 188
Query: 206 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
GG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP
Sbjct: 189 GGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 248
Query: 266 ANN 268
ANN
Sbjct: 249 ANN 251
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 144/235 (61%), Gaps = 27/235 (11%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA +
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 159 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLG 213
L+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLG
Sbjct: 113 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 172
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 173 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 144/235 (61%), Gaps = 27/235 (11%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA +
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 159 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLG 213
L+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLG
Sbjct: 113 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 172
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 173 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQ 162
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIGGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 27 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 83
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 84 MLGALGCVFPEVLSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 142
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 143 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 202
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 203 FGFFVQAIVTGKGPIENLFDHLADPVANN 231
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/225 (49%), Positives = 140/225 (62%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L G + P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYL--GPFSGNS-PSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 210
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 144/235 (61%), Gaps = 27/235 (11%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 3 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 51
Query: 109 DPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA +
Sbjct: 52 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 110
Query: 159 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLG 213
L+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLG
Sbjct: 111 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 170
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 171 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 225
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 149/257 (57%), Gaps = 21/257 (8%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+SA++ SA + + K + F +K + + + + WYGPDR +L
Sbjct: 3 TSAIQQSA--FTGQTALKQLNEFVRKTGGAGKGRTNMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEA 136
+IP YLTGE PGDYG+D GLS P+ F S+WAMLGA G PE
Sbjct: 61 ---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEI 117
Query: 137 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 193
K G G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+
Sbjct: 118 LEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRV 176
Query: 194 TNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
G E D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+
Sbjct: 177 GGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 252 GPVENLAKHLSDPFANN 268
GP++NL H++DP ANN
Sbjct: 237 GPIQNLYDHVADPVANN 253
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 138/225 (61%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D LS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAELSADPE 91
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 210
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGLIEGYRIGGGPLGEGLDSLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVENLYDHLADPVANN 253
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 138/226 (61%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A + WYG DR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKPKPAASG------SPWYGADRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
I + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 135/209 (64%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 44 WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 100
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 101 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 159
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 160 VVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 219
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 220 FGFFVQAIVTGKGPLENLADHLADPVNNN 248
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 130/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 104 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 162
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G + D L+PGG FDPLGLA DP+ FA LKVKEIKNGR AMF+M
Sbjct: 163 VVLMGAVEGYRIAGGPLGKVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRSAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 134/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YRI G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRIGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 150/262 (57%), Gaps = 25/262 (9%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKK----AAPPAKSKPVAVSPVNEELAKWYGPDRR 81
+++A + + S KPV S+K A + V+ S ++ + WYG DR
Sbjct: 1 MAAATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTI--WYGADRP 58
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGF 131
FL E P YL GE GDYG+D GLS P+ F++ WAMLGA G
Sbjct: 59 KFLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGC 115
Query: 132 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGA 188
+ PE K G G EAVWFK GA + L+Y G + + A+ A ++VL+G
Sbjct: 116 LTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 174
Query: 189 EYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 175 EGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 234
Query: 247 YVTGEGPVENLAKHLSDPFANN 268
VTG+GP+ENL HL+DP ANN
Sbjct: 235 IVTGKGPLENLNDHLADPVANN 256
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLG A DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGPADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 134/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KN RLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNSRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 222 MFGFFVQAIVTGKGPIENLADHVADPVNNN 251
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 72
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 73 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 131
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 132 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 191
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 192 FGFFVQAIVTGKGPLENLADHLADPVNNN 220
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/210 (53%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 49 WYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 164 RVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GPV+NL H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPVQNLYDHVADPVANN 253
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 134/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA V G+GP+ENL H++DP ANN
Sbjct: 222 MFGFFVQAIVRGKGPIENLFDHVTDPVANN 251
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 134/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++P G FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPSGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AE 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGADRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGLIEGYRVGGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVENLFDHLADPVANN 253
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YL GE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ F+ LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFSELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 135/210 (64%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYG DR P+ L SE P YLTGE PGDYG+D GLS P+ F++ W
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLSDHIADPVANN 253
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 137/220 (62%), Gaps = 22/220 (10%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 153
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA
Sbjct: 154 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFA 213
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWA 124
+YGPDR FL +++P YLTGE PGDYG+D GLS P+ F+ +WA
Sbjct: 45 FYGPDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWA 100
Query: 125 MLGAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 180
MLG G +PEA K+ G N G E+VWFK G + L+Y G ++ ++ V
Sbjct: 101 MLGTLGCFLPEALEKYSGINFG-ESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFI 159
Query: 181 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+ +L+G E YR+ G + DK++PGG FDPLGL DPD A LKVKEIKNGRLAMF+
Sbjct: 160 QALLMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFS 219
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M G+F+QA VTG+GPVENL HL+DPF NN
Sbjct: 220 MFGYFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 17 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 73
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 74 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 132
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 133 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 192
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 193 FGFFVQAIVTGKGPLENLADHIADPVNNN 221
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 132/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCVTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 130/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA D + FA LKVKEIKNGRLAMF+M
Sbjct: 164 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWA 124
+YGPDR FL +++P YLTGE PGDYG+D GLS P+ F+ +WA
Sbjct: 45 FYGPDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWA 100
Query: 125 MLGAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 180
MLG G +PEA K+ G N G E+VWFK G + L+Y G ++ ++ V
Sbjct: 101 MLGTLGCFLPEALEKYSGINFG-ESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFI 159
Query: 181 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+ +L+G E YR+ G + DK++PGG FDPLGL DPD A LKVKEIKNGRLAMF+
Sbjct: 160 QALLMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFS 219
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M G+F+QA VTG+GPVENL HL+DPF NN
Sbjct: 220 MFGYFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPESFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLYDHLADPTANN 254
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 132/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 30 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 86
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 87 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 145
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 146 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 205
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 206 FGFFVQAIVTGKGPIENLYDHLADPVANN 234
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 129/209 (61%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR FL E P YL GE GDYG+D GLS P+ F++ WA
Sbjct: 51 WYGADRPKFLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 227 FGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 138/222 (62%), Gaps = 26/222 (11%)
Query: 62 PVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF- 120
PV+ SP WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 42 PVSDSP-------WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFA 91
Query: 121 ---------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 169
S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 KNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 150
Query: 170 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 226
+ + ++ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP++ A LKV
Sbjct: 151 VHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKV 210
Query: 227 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
KE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 130/210 (61%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 IVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ L ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGNEPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 132/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 113/210 (53%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K W
Sbjct: 50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 105
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 106 AMLGALGCLFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 165 QVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 IVLVGGAEYYRIT-NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 182 IVLVGGAEYYRITNG---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E YR+ G L DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 165 VVLMGFVEGYRVGGGPLGWGL-DKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 132/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 130/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G E+VWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KNGRLA F+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLATFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 IVLVGGAEYYRIT-NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGIVFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF++
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSV 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P Y TGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+K+GRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKHGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 138/225 (61%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
++KPV+ + WYG DR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 RAKPVSSG------SPWYGTDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 150
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 151 PNLVHAQSILAIWASQVILMGAVEGYRIGGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 210
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 104 MLGALGIVFPEPLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D +PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF++
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPTYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSV 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 137/225 (60%), Gaps = 25/225 (11%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE F + G G EAVW K G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGN 150
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A +++L+G E YR+ G + D L+PGG FDPLGLA+DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAE 210
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKE KNGRLAMF+M GFF+QA VTG+GP+ENLA HL DP NN
Sbjct: 211 LKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 130/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCDFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFST 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 130/210 (61%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 45 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 101
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 160
Query: 182 IVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ L ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 161 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 220
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 221 MFGFFVQAIVTGKGPIENLADHLADPVTNN 250
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILERNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 150/260 (57%), Gaps = 32/260 (12%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA--PPAKSKPVAVSPVNEELAKWYGPDRRIFL 84
SA A G S + V F + + KS P ++ WYG DR
Sbjct: 8 QSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSI---------WYGEDR---- 54
Query: 85 PEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFII 133
P+ L SE P YLTGE PGDYG+D GLS P+ F++ WAMLGA G +
Sbjct: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVF 114
Query: 134 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 190
PE +K G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 115 PEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEG 173
Query: 191 YRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
YR+ G E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 174 YRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
Query: 249 TGEGPVENLAKHLSDPFANN 268
TG+GP+ENL+ H++DP ANN
Sbjct: 234 TGKGPIENLSDHINDPVANN 253
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+ P NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLAGPVNNN 251
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 141/234 (60%), Gaps = 27/234 (11%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S +K A AK KP A + WYGPDR +L E P YLTGE GDYG+D
Sbjct: 2 SMRKTA--AKPKPAASG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWD 50
Query: 110 PFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 159
GLS P+ F+K WAMLGA G + PE + G G EAVWFK G+ +
Sbjct: 51 TAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFS 109
Query: 160 GNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGL 214
L+Y G + + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGL
Sbjct: 110 EGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGL 169
Query: 215 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
A DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 170 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 223
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G E+VWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA +TG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIITGKGPIENLLDHLADPVANN 253
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 132/213 (61%), Gaps = 17/213 (7%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------- 120
V+ +WYGPDR ++L G +P YL GE PGDYG+D GLS P+ F
Sbjct: 1 VSRNAVEWYGPDRALWL--GPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQE 58
Query: 121 ---SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 175
++WAMLGA G + PE +K+ E+VWFK G+ + L+Y G + +
Sbjct: 59 LIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSI 118
Query: 176 FAVI-AEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 232
A++ ++VL+G E YR+ G E D LHPG FDPLGLA DPD FA LK+KEIKNG
Sbjct: 119 LAILGCQVVLMGLIEAYRVNGGPLGEGLDTLHPGESFDPLGLADDPDTFAELKIKEIKNG 178
Query: 233 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
RLAMF+M GF++QA VTG+GP+EN A H++DPF
Sbjct: 179 RLAMFSMFGFYVQAIVTGKGPIENWADHVADPF 211
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 143/235 (60%), Gaps = 27/235 (11%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA +
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 159 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLG 213
L+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLG
Sbjct: 113 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 172
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LA DP+ FA KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 173 LADDPEAFAEXKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 45 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 101
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 160
Query: 182 IVLVGGAEYYRIT-NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 161 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 220
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 221 MFGFFVQAIVTGKGPIENLADHLADPVTNN 250
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 49 WYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 130/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 29 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 85
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EA WFK G+ + L+Y G I + A+ A +
Sbjct: 86 MLGALGCVFPELLARNGVKFG-EACWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQ 144
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPL LA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 145 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKELKNGRLAMFSM 204
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 205 FGFFVQAIVTGKGPLENLADHLADPVNNN 233
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 166 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA L+DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADPLADPVNNN 254
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 52 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 108
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 109 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 167
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 168 VVLMGAVEGYRIAGGPLGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 227
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL DP NN
Sbjct: 228 FGFFVQAIVTGKGPLENLADHLFDPVNNN 256
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 134/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYG DR P+ L SE P YLTGE PGDYG+D GLS P+ F++ W
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IA 180
AMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAA 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLYDHVADPVANN 253
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 49 WYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 129/203 (63%), Gaps = 19/203 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 171 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 230
Query: 240 LGFFLQAYVTGEGPVENLAKHLS 262
GFF+QA VTG+GP+ENLA HL+
Sbjct: 231 FGFFVQAIVTGKGPIENLADHLA 253
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 44 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 100
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 101 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 159
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 160 VVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSM 219
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 220 FGFFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 135/210 (64%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYG DR P+ L SE P YLTGE PGDYG+D GLS P+ F++ W
Sbjct: 21 WYGEDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRW 76
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 77 AMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 135
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 136 QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 195
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct: 196 MFGFFVQAIVTGKGPIENLSDHIADPVANN 225
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 44 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 100
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 101 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 159
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 160 VVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSM 219
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 220 FGFFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 130/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+ L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VGLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 134/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDY +D GLS P+ F S+W
Sbjct: 37 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRW 92
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 93 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 151
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 152 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 211
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 212 MFGFFVQAIVTGKGPIENLFDHVADPVANN 241
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 49 WYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VT +GPV+NL H++DP ANN
Sbjct: 224 MFGFFVQAIVTDKGPVQNLYDHVADPVANN 253
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 129/209 (61%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 51 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVTPELLAKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPNLVHAQSILAIWASQ 166
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 167 VILMGAVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSM 226
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF QA VTG+GP+ENL HL +P NN
Sbjct: 227 FGFFTQAIVTGKGPIENLLDHLDNPTVNN 255
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGP+R +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 7 WYGPERVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 63
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 64 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 122
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 123 VLLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 182
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 183 FGFFVQAIVTGKGPLENLADHLADPVNNN 211
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 32 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 88
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 89 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 147
Query: 182 IVLVGGAEYYRIT-NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 148 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 207
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 208 MFGFFVQAIVTGKGPIENLADHLADPVNNN 237
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGADRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA L+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADPLADPVNNN 253
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 133/221 (60%), Gaps = 20/221 (9%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 121 -------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 171
S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 172 INLVFAVIA-EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVK 227
+ A+ A +++L+G E YR+ L ED L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 154 AQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVK 213
Query: 228 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
E+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 46 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 103 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 162 VVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSM 221
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 222 FGFFVQAIVTGKGPIENLFDHVADPVANN 250
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 138/238 (57%), Gaps = 19/238 (7%)
Query: 47 ALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
AL K +AA A +K +P +WYGPDR +L + P YLTGE PGD
Sbjct: 10 ALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGP---FSTNTPAYLTGEFPGD 66
Query: 106 YGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 155
YG+D GLS P+ F K WA+LGA G + PE + + E VWFK GA
Sbjct: 67 YGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGA 126
Query: 156 LLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFD 210
+ L+Y G I N+V + ++VL+G E YR+ G E D L+PG FD
Sbjct: 127 QIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFD 186
Query: 211 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
PLGLA DPD FA LKVKEIKNGRLAMF+ GFF+QA VTG+GP++NLA HL+DP NN
Sbjct: 187 PLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNN 244
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 133/221 (60%), Gaps = 20/221 (9%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 121 -------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 171
S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVEFG-EAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 172 INLVFAVIA-EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVK 227
+ A+ A +++L+G E YR+ L ED L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 154 AQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVK 213
Query: 228 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
E+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 138/217 (63%), Gaps = 20/217 (9%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------- 120
+E L+++YGP+R ++L G L S P YLTGE PGDYG+D GLS P+ F
Sbjct: 46 TSERLSQFYGPERALWL--GPLSGSA-PSYLTGEFPGDYGWDSAGLSSDPETFKRYRELE 102
Query: 121 ---SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 175
++WAMLGA G + PE K G E VWFK GA + L+Y G + +
Sbjct: 103 LIHARWAMLGALGCVTPELLAKNGTPIA-EPVWFKAGAQIFQEGGLDYLGNPGLVHAQSI 161
Query: 176 FAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKN 231
A +A +++L+G E +R+ G E DKLHPGGP FDPL LA+DPD FA LKVKEIKN
Sbjct: 162 LATLACQVILMGAIEGFRVNGGPAGEGLDKLHPGGPWFDPLALAEDPDAFAELKVKEIKN 221
Query: 232 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GRLAMF+M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 222 GRLAMFSMFGFFVQAIVTGQGPIENLESHLANPGVNN 258
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 132/209 (63%), Gaps = 18/209 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F ++WA
Sbjct: 37 WYGPDRPQFLGP---FSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWA 93
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AE 181
MLGA G + PE +K+G E+VWFK G+ + L+Y G + + A++ +
Sbjct: 94 MLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQ 153
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M
Sbjct: 154 VVLMGAIEAYRVNGGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSM 213
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GF++QA VTG+GP+EN A+H+++PF+ N
Sbjct: 214 FGFYVQAVVTGKGPIENWAEHVANPFSVN 242
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 133/220 (60%), Gaps = 20/220 (9%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-- 122
V P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 39 VKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 95
Query: 123 --------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 172
WAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
Query: 173 NLVFAVIA-EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+ A+ A +++L+G E YR+ L ED L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 155 QSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 214
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 49 WYGEDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + AV A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 133/220 (60%), Gaps = 20/220 (9%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-- 122
V P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 39 VKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 95
Query: 123 --------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 172
WAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
Query: 173 NLVFAVIA-EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+ A+ A +++L+G E YR+ L ED L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 155 QSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLAADPEAFAELKVKE 214
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 130/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGADRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 163
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GPVENL HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPVENLYDHLADPATNN 252
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 140/226 (61%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L R E P YLTG+ PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGADRVLYL--GPLSR-EPPSYLTGDFPGDYGWDTAGLSADP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ FSK WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+ P F
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGRFDPLGLAERPQAFD 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GF +QA VTG+GP+ENLA H++DP NN
Sbjct: 209 ALKVKEIKNGRLAMFSMFGFLVQAIVTGKGPLENLADHIADPVNNN 254
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 138/231 (59%), Gaps = 26/231 (11%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K++ S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKSSTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDP 202
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
LGLA DPD FA LKVKE+KNGRLAMF+M GFF QA VTG+GP+ENLA HL+
Sbjct: 203 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFXQAIVTGKGPIENLADHLA 253
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 130/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 29 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 85
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EA WFK G+ + L+Y G I + A+ A +
Sbjct: 86 MLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQ 144
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPL LA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 145 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSM 204
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL++P NN
Sbjct: 205 FGFFVQAIVTGKGPLENLADHLAEPVNNN 233
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 131/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 39 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 96
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G I PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 97 AMLGALGCITPELLAKSGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 155
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 156 QVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 215
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP++NL HLS+P NN
Sbjct: 216 MFGFFVQAIVTGKGPIQNLDDHLSNPTVNN 245
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 148/260 (56%), Gaps = 21/260 (8%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ +SA++ S+ + L SK A+ + V E + WYGPDR +
Sbjct: 1 MATASAIQISSLAGQTLLRPQQNELVSKVGASQARITMRRTVRSAPESI--WYGPDRPKY 58
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFII 133
L + P YLTGE PGDYG+D GLS P+ F S+WAMLGA G +
Sbjct: 59 LGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 115
Query: 134 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 190
PE K G G EAVWFK GA + L+Y G I + A+ A ++VL+G E
Sbjct: 116 PELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEG 174
Query: 191 YRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
YR+ G E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA V
Sbjct: 175 YRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 234
Query: 249 TGEGPVENLAKHLSDPFANN 268
TG+GP+ENL HL+DP NN
Sbjct: 235 TGKGPIENLFDHLADPANNN 254
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G E+VWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLAKNGVKFG-ESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ F LKVKE+K GRLAM +M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHIADPVNNN 253
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 130/210 (61%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 48 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 163
Query: 182 IVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ L ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 164 VILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 MFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 139/219 (63%), Gaps = 20/219 (9%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF-------- 120
NE+L+ +YGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F
Sbjct: 46 NEKLSAFYGPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELEL 102
Query: 121 --SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 176
++WAMLGA G I PE K G E VWFK GA + L+Y G + +
Sbjct: 103 IHARWAMLGALGCITPELLAKNGTPI-VEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSIL 161
Query: 177 AVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNG 232
A +A +++L+G E YR+ G E DKLHPGG F DPLGLA+DPD FA LKVKEIKNG
Sbjct: 162 ATLAVQVILMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNG 221
Query: 233 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
RLAMF+M GFF+QA VTG+GP+ NL +HL+ PF +N T
Sbjct: 222 RLAMFSMFGFFVQAIVTGKGPLANLDEHLASPFTSNAFT 260
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 136/234 (58%), Gaps = 18/234 (7%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S K K A S ++YGP+R +L G + P YLTGE PGDYG+D
Sbjct: 15 SAKATGKKGTGKTAAKSAPASSGIEFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWD 72
Query: 110 PFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 159
GLS P+ F ++WAMLGA G + PE K G G EAVWFK GA +
Sbjct: 73 TAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTQFG-EAVWFKAGAQIFS 131
Query: 160 GNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGL 214
L+Y G + N+V + +++L+G E YR+ G E D L+PG FDPLGL
Sbjct: 132 EGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGL 191
Query: 215 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
A DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GPV+NL HLS+P NN
Sbjct: 192 ADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLSNPTVNN 245
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 135/221 (61%), Gaps = 20/221 (9%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 121 -------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 171
S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 172 INLVFAVIA-EIVLVGGAEYYRIT-NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 227
+ A+ A +++L+G E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 154 AQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVK 213
Query: 228 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
E+KNGRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVNNN 254
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 16 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 72
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 73 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 182 IVLVGGAEYYRIT-NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 132 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 191
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 192 MFGFFVQAIVTGKGPIENLADHLADPVNNN 221
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 135/222 (60%), Gaps = 19/222 (8%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
A V ++YGPDR FL G +P YL GE PGDYG+D GLS P+ F
Sbjct: 25 ARKQVTRASVEFYGPDRAKFL--GPFSEGAVPSYLKGEFPGDYGWDTAGLSADPETFARY 82
Query: 121 -------SKWAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKTGALLLDGNTLNYFGKNIPI 172
S+WA+LGA G + PE + GA + G AVWFK GA + + LNY G I
Sbjct: 83 REIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDDGLNYLGNPQLI 142
Query: 173 N---LVFAVIAEIVLVGGAEYYRITNGLDLE---DKLHPGGPFDPLGLAKDPDQFALLKV 226
+ +V ++A+IVLVG AE YR ++ DKL+PGG FDPLGL DP+ A LKV
Sbjct: 143 HAQSIVATLLAQIVLVGTAEAYRYAGEGPVDTSGDKLYPGGFFDPLGLGDDPEALAELKV 202
Query: 227 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
KEIKNGRLA ++ GFF+QA VTG+GP+ENL HL+DP+ NN
Sbjct: 203 KEIKNGRLAQVSVFGFFVQALVTGKGPLENLDDHLADPWNNN 244
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE GDYG+D GLS P+ F S+W
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 128/199 (64%), Gaps = 12/199 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAGFIIP 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F AMLGA G + P
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETF---AMLGALGCVFP 103
Query: 135 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 191
E K G G EAVWFK GA + L+Y G I + A+ A ++VL+G E Y
Sbjct: 104 ELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGY 162
Query: 192 RITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
R+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 163 RVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 222
Query: 250 GEGPVENLAKHLSDPFANN 268
G+GP+ENL HL+DP ANN
Sbjct: 223 GKGPIENLFDHLADPTANN 241
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 132/213 (61%), Gaps = 20/213 (9%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK---------- 122
+ WYGPDR +FL G L E P YLTGE PGDYG+D G S P F++
Sbjct: 40 SAWYGPDRPLFL--GSLS-GEPPSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHAR 96
Query: 123 WAMLGAAGFIIPEAFNKFGAN-CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI 179
WA+LGA G + PE + G G A+WFK G+ + LNY G I + A +
Sbjct: 97 WALLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATL 156
Query: 180 A-EIVLVGGAEYYRITN---GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
A +++++G AE +R G++ D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLA
Sbjct: 157 AVQVIVMGAAEGFRANGEAPGVEGLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLA 216
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
MFA GFF+QA VTG+GP++NL HL+DP NN
Sbjct: 217 MFACFGFFVQAIVTGKGPIQNLEDHLADPGVNN 249
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 134/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYG DR P+ L SE P Y TGE PGDYG+D GLS P+ F++ W
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAC 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLSDHINDPVANN 253
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VVLMGFIEGYRVGGGPLGEGLDSIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+D ANN
Sbjct: 224 FGFFVQAIVTGKGPIENLFDHLADLAANN 252
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 18 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 74
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 75 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQ 133
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 134 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSM 193
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 194 FGFFVQAIVTGKGPIENLFDHLADPTANN 222
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
M GA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MPGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA P+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADVPEAFAELKVKEIKNGRLAMFSM 223
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAV FK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+K GRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKKGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHIADPVNNN 253
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG DR +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 28 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 84
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 85 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 143
Query: 182 IVLVGGAEYYRIT-NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 144 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 203
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 204 MFGFFVQAIVTGKGPLENLADHLADPVNNN 233
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 134/224 (59%), Gaps = 19/224 (8%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----- 122
V ++YGPDR +L G +P YL GE PGDYG+D GLS P+ F++
Sbjct: 24 VTRASVEFYGPDRAKWL--GPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREIE 81
Query: 123 -----WAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKTGALLLDGNTLNYFGKNIPIN--- 173
WAMLGA G + PE GA + G AVWFK GA + + LNY G I+
Sbjct: 82 VIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQS 141
Query: 174 LVFAVIAEIVLVGGAEYYRITNGLDLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 230
+V ++ ++V++G AE YR +E D L+PGG FDPLGLA DPD A LKVKE+K
Sbjct: 142 IVAVLLTQLVIMGAAEAYRYAGEGPVETSGDSLYPGGAFDPLGLADDPDTLAELKVKELK 201
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
NGRLAMF+M GFF+QA +TG+ P+ENLA HL+DP N V +
Sbjct: 202 NGRLAMFSMFGFFVQALITGKSPLENLADHLADPSTANGFAVAT 245
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 132/208 (63%), Gaps = 19/208 (9%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAM 125
YGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WAM
Sbjct: 4 YGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 60
Query: 126 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 182
LGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A ++
Sbjct: 61 LGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 119
Query: 183 VLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 120 VLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMF 179
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 180 GFFVQAIVTGKGPIENLFDHVADPVANN 207
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 162
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 163 VVLMGFIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GPVENL H++DP NN
Sbjct: 223 FGFFVQAIVTGKGPVENLFDHVADPVNNN 251
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 130/210 (61%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE K G G EAVWFK GA + LNY G I N+V +
Sbjct: 94 AMLGALGIVTPELLQKNGVQFG-EAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAV 152
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVVLLGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP++NL HLS+P NN
Sbjct: 213 SFGFFVQAIVTGKGPIQNLDDHLSNPGVNN 242
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 130/207 (62%), Gaps = 19/207 (9%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF-------- 120
+E + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 48 SESPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 104
Query: 121 --SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 176
S+WAMLGA G + PE + G G EAVWFK GA + L+Y G I +
Sbjct: 105 IHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIL 163
Query: 177 AVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 233
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGR
Sbjct: 164 AIWASQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGR 223
Query: 234 LAMFAMLGFFLQAYVTGEGPVENLAKH 260
LAMF+M GFF+QA VTG+GP+ENLA H
Sbjct: 224 LAMFSMFGFFVQAIVTGKGPIENLADH 250
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAM +M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMTSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GPVENL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVENLYDHVADPVANN 253
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 152/259 (58%), Gaps = 24/259 (9%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE-LAKWYGPDRRIFLP 85
+SA++ S+ + +T KP +K A + + V + WYGPDR P
Sbjct: 3 TSAIQHSS--FAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDR----P 56
Query: 86 EGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIP 134
+ L SE P YLTGE PGDYG+D GLS P+ F S+WAMLGA G P
Sbjct: 57 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 116
Query: 135 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 191
E +K G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E Y
Sbjct: 117 EILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGY 175
Query: 192 RITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
RI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+M GFF+QA VT
Sbjct: 176 RIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVT 235
Query: 250 GEGPVENLAKHLSDPFANN 268
G+GP+ENL H++DP ANN
Sbjct: 236 GKGPIENLFDHIADPVANN 254
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 135/227 (59%), Gaps = 26/227 (11%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 39 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 88
Query: 107 GYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F S+WAMLGA G + PE + G G EAVWFK GA
Sbjct: 89 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 147
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 148 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 207
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 258
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 208 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 254
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 139/226 (61%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE + G G EA WFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLG 148
Query: 168 KNIPIN---LVFAVIAEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
++ L+ ++VL+G E YRI G ++ D L+PGG FDPLGLA+ P FA
Sbjct: 149 NPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E+LA H++DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 154/266 (57%), Gaps = 49/266 (18%)
Query: 52 KKAAPPAKSKPV--AVSPVNEE--LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
KK P K PV A PV+++ +AKWYGP+R+++LP GLL ++++P YL G + GDYG
Sbjct: 66 KKPTPATKRAPVKAARQPVDQKAAIAKWYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYG 125
Query: 108 YDPFGLSK--KPDDF-------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
+DP GL K D+ ++WAML G +IPEA N P VW +TG + L
Sbjct: 126 FDPLGLGADGKVKDYRVAEILHARWAMLAVPGVVIPEALNI------PGGVWTETGKVFL 179
Query: 159 DGNTLNYFGKNIPINL--VFAVIAEIVLVGGAEYYRIT-------------------NGL 197
DG T G++ + ++A I ++VL+GGAE +R NGL
Sbjct: 180 DGET----GRDSILEFWPIYAAI-QVVLMGGAEKFRQDGVGPAGFVPFKGKFEESAFNGL 234
Query: 198 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
D ++PGGP D +AK+P +LKVKEIKNGRLAM AMLG F+Q VTGEGP N
Sbjct: 235 D---PVNPGGPLDFFDVAKNPQDLQILKVKEIKNGRLAMIAMLGVFVQGAVTGEGPAANW 291
Query: 258 AKHLSDPFANNLLTVISGNAERAPTL 283
KH+++PF N +T+ SG +R P L
Sbjct: 292 GKHVANPFGYNFVTITSG-IDRTPVL 316
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 164
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 165 QVVLMGLIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHLADPVANN 254
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 135/227 (59%), Gaps = 26/227 (11%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 39 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 88
Query: 107 GYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F+K WAMLGA G + PE + G G EAVWFK GA
Sbjct: 89 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 147
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 148 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 207
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 258
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 208 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 254
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 131/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTG+ PGDYG+D GLS P+ F S+W
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI---PINLVFAVIA 180
AMLGA G PE +K G N G EAVWFK GA + L+Y G P +++
Sbjct: 103 AMLGALGCFFPEILSKNGVNFG-EAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAV 161
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FD LGLA+DPD FA KVKE NGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDHLGLAEDPDTFAEFKVKEFNNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
MLGFF+QA VTG+GP+EN H++DP ANN
Sbjct: 222 MLGFFVQAIVTGKGPIENFFDHVADPVANN 251
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYG DR P+ L SE P YLTGE PGDYG+D GLS P+ F++ W
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL ++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDQINDPVANN 253
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGSPNLIHAQSILAIWAC 164
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 165 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 129/210 (61%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG +R +L E P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 50 WYGSERVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 IVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ L ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFAQAIVTGKGPLENLADHLADPVNNN 255
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 128/209 (61%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGP+R +L + P YLTGE GDYG+D GLS P+ F ++WA
Sbjct: 40 WYGPERAKWLGP---FSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWA 96
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K G G EAVWFK GA + LNY G + I + A +A +
Sbjct: 97 MLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQ 155
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 156 VILMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 215
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 216 FGFFVQAIVTGQGPIANLDAHLSDPSGNN 244
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 131/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDY +D GLS P+ F S+W
Sbjct: 50 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 106 AMLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAF 164
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 165 QVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFS 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHLADPANNN 254
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE GDYG+D GLS P+ F S+W
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNG LAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGSLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 130/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQ 164
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G E D L+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA V G+GP+ENL+ L+ P ANN
Sbjct: 225 FGFFVQAIVPGKGPIENLSDPLAAPVANN 253
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K W
Sbjct: 10 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRW 65
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 66 AMLGALGCVFPELLVKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 124
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 125 QVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 184
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 185 MFGFFVQAIVTGKGPIENLYDHLADPVANN 214
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/199 (51%), Positives = 126/199 (63%), Gaps = 19/199 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 60 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 116
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 117 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 175
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 176 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 235
Query: 240 LGFFLQAYVTGEGPVENLA 258
GFF+QA VTG+GP+ENLA
Sbjct: 236 FGFFVQAIVTGKGPIENLA 254
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 131/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 92
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 93 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 151
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 152 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 211
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 212 MFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 128/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR FL G +P YLTGE PGDYG+D GLS P+ F ++WA
Sbjct: 36 WYGPDRPKFL--GPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWA 93
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 181
MLGA G I PE K+ EAVWFK GA + LNY G ++ +V ++ +
Sbjct: 94 MLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSIVATLVVQ 153
Query: 182 IVLVGGAEYYRITNGL------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
++L+G E YR NG + +D L+PGG FDPLGLA DPD A LKVKE+KNGRLA
Sbjct: 154 VLLMGAVEIYR-ANGEGPSGFGEGQDNLYPGGAFDPLGLADDPDTLAELKVKELKNGRLA 212
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
M +MLGFF+QA VTG+GP++NL HL +P
Sbjct: 213 MMSMLGFFVQAIVTGKGPLDNLLTHLEEP 241
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 131/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPVQNLDDHLANPTVNN 242
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F S+W
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF
Sbjct: 165 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFP 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 135/227 (59%), Gaps = 26/227 (11%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 18 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 67
Query: 107 GYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F+K WAMLGA G + PE + G G EAVWFK GA
Sbjct: 68 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 126
Query: 157 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDP 211
+ L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDP
Sbjct: 127 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 186
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 258
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 187 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 233
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 131/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPVQNLDDHLANPGVNN 242
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 130/210 (61%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 27 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARW 84
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE K G G EAVWFK GA + LNY G I N+V +
Sbjct: 85 AMLGALGIVTPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAV 143
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 144 QVILLGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 203
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP++NL HLS+P NN
Sbjct: 204 SFGFFVQAIVTGKGPIQNLDDHLSNPGVNN 233
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 130/210 (61%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K W
Sbjct: 50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRW 105
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 106 AMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWAC 164
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D L PGG FDPLGLA DP+ A LKVKEIKNGRLAMF+
Sbjct: 165 QVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFS 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 129/221 (58%), Gaps = 18/221 (8%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK- 122
A V A++YGPDR FL P YL GE PGDYG+D GLS P+ FS+
Sbjct: 17 ATRQVTRASAEFYGPDRVKFLGP---FSGATPSYLKGEYPGDYGWDTAGLSADPETFSRY 73
Query: 123 ---------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 173
WAMLGA G + PE K GA EAVWFK GA + L+Y G ++
Sbjct: 74 RELEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLGNANLVH 133
Query: 174 ---LVFAVIAEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+V ++ +IVL+G E YR+ G ++ D ++PG FDPLGLA DPD A LKVKE
Sbjct: 134 AQSIVAVLLTQIVLMGLIEGYRVNGGPAGEITDPIYPGEAFDPLGLADDPDTLAELKVKE 193
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNL 269
IKNGRLAM +M GFF+QA VTG+GP+ENL HL+ P N
Sbjct: 194 IKNGRLAMVSMFGFFIQAIVTGKGPIENLNDHLAAPGETNF 234
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 131/210 (62%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 36 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 153 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKELKNGRLAMFS 212
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPVQNLDDHLANPTVNN 242
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 128/210 (60%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYG +R +L E P YLTG+ PGDYG+D GLS P+ F +WA
Sbjct: 50 WYGSERVKYLGP---FSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 IVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ L ED L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 166 VILMGAVEGYRVPGDGPLGEAEDLLYPGGSFDPLGLATDPVAFAELKVKEIKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 126/214 (58%), Gaps = 22/214 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGP R FL G P YLTGE PGDYG+D GLS P F++ W
Sbjct: 37 SWYGPSRPKFL--GPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARW 94
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 180
AMLGA G ++PE + G N WF GA + + L Y G IN +V +I
Sbjct: 95 AMLGALGCVVPELLD--GTN---HIAWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIV 149
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+ E YR+ G D ++PGG FDPLGLA DPD F+ LKVKEIKNGRLAM +
Sbjct: 150 QVILMSYVEGYRVNGGPAGTGLDAVYPGGSFDPLGLADDPDTFSELKVKEIKNGRLAMLS 209
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
M GFF+QA VTGEGP+ENL KHL+D ANN ++
Sbjct: 210 MFGFFIQAIVTGEGPIENLNKHLADASANNFYSL 243
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 125/191 (65%), Gaps = 16/191 (8%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGA 142
E P YLTGE PGDYG+D GLS P+ F+K WAMLGA G + PE ++ G
Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV 64
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 197
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 65 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLG 123
Query: 198 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 124 EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 183
Query: 258 AKHLSDPFANN 268
A HL+DP NN
Sbjct: 184 ADHLADPVNNN 194
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 143/254 (56%), Gaps = 22/254 (8%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 7 AATASSSTGLRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 63
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKF 140
++ P YLTGE PGDYG+D GLS P+ F++ WAMLGA G I PE K+
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 141 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN-- 195
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 183
Query: 196 GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254
G+ + L+PGGP FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 184 GVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 243
Query: 255 ENLAKHLSDPFANN 268
ENL HL +P ANN
Sbjct: 244 ENLLDHLDNPVANN 257
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 130/210 (61%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNG LAMF+
Sbjct: 153 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGALAMFS 212
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPVQNLDDHLANPGVNN 242
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 128/206 (62%), Gaps = 17/206 (8%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
++ V+ +WYGPDR +L G ++P YLTGE PGDYG+D GLS P+ F
Sbjct: 17 SIRNVSRNAVEWYGPDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 74
Query: 121 -------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 171
++WAMLGA G + PE +K+G E+VWFK G+ + L+Y G + I
Sbjct: 75 REQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSNLIH 134
Query: 172 INLVFAVI-AEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+ A++ ++VL+G E YR+ G E D LHPG FDPLGLA DPD FA LKVKE
Sbjct: 135 AQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVKE 194
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPV 254
IKNGRLAMF+M GF++QA VTG+GP+
Sbjct: 195 IKNGRLAMFSMFGFYVQAIVTGKGPI 220
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 131/209 (62%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
W+GPD +L E P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 12 WHGPDGVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 68
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 69 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 127
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M
Sbjct: 128 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSM 187
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+ A VTG+GP+ENLA HL+DP NN
Sbjct: 188 FGFFVPAIVTGKGPLENLADHLADPVNNN 216
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 129/209 (61%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 162
Query: 182 IVLVGGAEYYRITNG-LDLE-DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G LD D ++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 163 VVLMGFIEGYRVGGGPLDEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSM 222
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GPVENL L DP NN
Sbjct: 223 FGFFVQAIVTGKGPVENLFDQLRDPGNNN 251
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 143/254 (56%), Gaps = 22/254 (8%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 7 AATASSSTGLRPTQFVGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 63
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKF 140
++ P YLTGE PGDYG+D GLS P+ F++ WAMLGA G I PE K+
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 141 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN-- 195
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 183
Query: 196 GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254
G+ + L+PGGP FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 184 GVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 243
Query: 255 ENLAKHLSDPFANN 268
ENL HL +P ANN
Sbjct: 244 ENLLDHLDNPVANN 257
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 138/244 (56%), Gaps = 34/244 (13%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFL----PEGLLDRSEIPEYLTGEVPG 104
F+ K+A + A V ++YGPDR FL PE +YLTGE PG
Sbjct: 3 FALKQAVATKAAATRATRQVTRAAVEFYGPDRAKFLGPFTPE--------SDYLTGEFPG 54
Query: 105 DYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 154
DYG+D GLS P FS+ WAMLGA G I PE K G G EAVWFK G
Sbjct: 55 DYGWDTAGLSADPQTFSRYREVEVIHARWAMLGALGCITPELLAKNGVPFG-EAVWFKAG 113
Query: 155 ALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL------DLEDKLHP 205
A + LNY G + + A +A +++L+G AE YR G DL D L+P
Sbjct: 114 AQIFQDGGLNYLGNENLVHAQSILATLAVQVILMGAAEAYRANGGAPGGFGEDL-DSLYP 172
Query: 206 GGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
GG F DPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ NL HL+DP
Sbjct: 173 GGKFFDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLADP 232
Query: 265 FANN 268
NN
Sbjct: 233 SGNN 236
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/193 (50%), Positives = 123/193 (63%), Gaps = 17/193 (8%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFG 141
S P YL GE PGDYG+D GLS P+ F++ WAMLGA G + PE ++ G
Sbjct: 9 SATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNG 68
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITN--- 195
E VW+K GA +L L+Y GK ++ +V + +++L+G AE YR
Sbjct: 69 FTF-QEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAAGSAP 127
Query: 196 GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 255
G+D DKL+PGGPFDPL A DPD A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 128 GVDGLDKLYPGGPFDPLEFASDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 187
Query: 256 NLAKHLSDPFANN 268
NL HL+ P+ANN
Sbjct: 188 NLNDHLASPYANN 200
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 129/210 (61%), Gaps = 19/210 (9%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGP+R +L + P YLTGE GDYG+D GLS P+ F ++W
Sbjct: 38 EFYGPNRAKWLGP---FSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARW 94
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G I PE K G G EAVWFK GA + LNY G + I + A +A
Sbjct: 95 AMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLAC 153
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 154 QVILMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 213
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 214 MFGFFVQAIVTGQGPIANLDAHLSDPSGNN 243
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 135/216 (62%), Gaps = 20/216 (9%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----- 122
V ++YGP+R +L G +S P YL GE PGDYG+D GLS P+ F++
Sbjct: 29 VTRAAIEFYGPNRAGYL--GPFTKS--PSYLNGEYPGDYGWDTAGLSADPETFARYREIE 84
Query: 123 -----WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---L 174
WAMLGA G + PE K G + G EAVW+K G+ + L+Y G I+ +
Sbjct: 85 VIHARWAMLGALGCVTPELLAKNGVSFG-EAVWWKAGSQIFAPGGLDYLGNPSLIHAQSI 143
Query: 175 VFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 232
+ V ++++L+G E YR+ G E D L+PG FDPLGLA DPD FA L+VKEIKNG
Sbjct: 144 IAIVFSQVLLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFAELRVKEIKNG 203
Query: 233 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
RLAMF+M GFF+QA VTG+GP+ENLA HL++P NN
Sbjct: 204 RLAMFSMFGFFVQAIVTGKGPIENLADHLANPSVNN 239
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 130/211 (61%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 107 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 167 VILMGLVEGFRI-NGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 226 SMFGFFVQAIVTGKGPLENLLDHLDDPVANN 256
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 130/211 (61%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 51 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 108 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 167
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 168 VILMGLVEGFRI-NGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 226
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 227 SMFGFFVQAIVTGKGPLENLLDHLDDPVANN 257
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 128/209 (61%), Gaps = 19/209 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L E P YLTGE GDYG+D GLS P+ F+K WA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AE 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQ 164
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+V +G E YR+ G ++ D L+PGG DPLGLA DP+ FA LKVKEIKNGRLAM +M
Sbjct: 165 VVFMGAVEGYRVAGGPLGEVVDPLYPGGSLDPLGLADDPEAFAELKVKEIKNGRLAMLSM 224
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+EN+ HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENITDHLADPVNNN 253
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/198 (51%), Positives = 125/198 (63%), Gaps = 19/198 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGP+R +FL E P YLTGE PGDYG+D GLS P+ F ++WA
Sbjct: 41 WYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 97
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE +G G EAVWFK GA + L+Y G + + A++ +
Sbjct: 98 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQ 156
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G E DKL+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 157 VLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 216
Query: 240 LGFFLQAYVTGEGPVENL 257
GFF+QA VTG+GP++NL
Sbjct: 217 FGFFVQAIVTGKGPLQNL 234
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 141/248 (56%), Gaps = 25/248 (10%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAK-------WYGPDRRIFLPEGLLDRSEIPEYL 98
VA +++ A A K AK +YGP+R +FL GL E P YL
Sbjct: 4 VAFRAQRAVAAKAGRKTTVSVQARRTQAKKAVPESPFYGPNRPLFL-GGL--SGEPPAYL 60
Query: 99 TGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEA 148
GE PGDYG+D GLS P+ F ++WA+LGA G ++PE + G +
Sbjct: 61 NGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALGCVVPELLARNGVAMPADG 120
Query: 149 VWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGLDLE--DKL 203
VWFK GA + LNY G ++ +V ++ ++VL+G AE YRI G E D L
Sbjct: 121 VWFKVGAEIFKEGGLNYLGNENLVHAQSIVATLLVQLVLMGWAEGYRINGGPLGEGLDPL 180
Query: 204 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 263
+PGG FDPLGLA DPD A LKVKE+KNGR+AM AM GF +QA VT +GP+ENLA HL+
Sbjct: 181 YPGGAFDPLGLADDPDTLAELKVKELKNGRMAMAAMFGFLVQAIVTQKGPLENLADHLAA 240
Query: 264 PFANNLLT 271
P NN+ +
Sbjct: 241 PGTNNVFS 248
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 128/210 (60%), Gaps = 18/210 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 92
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 180
AMLGA G PE K G G EAVWFK GA + L+Y G + N+V
Sbjct: 93 AMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAV 151
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLA F+
Sbjct: 152 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFS 211
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 212 MFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 148/254 (58%), Gaps = 24/254 (9%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK--WYGPDRRIFLPEGLLDR 91
A AS+ + K ++K+A P + VA+ + WYGPDR +L
Sbjct: 5 AATASSATVVKQTPFLGQRKSANPLRDV-VAMGTSKFTMGNDLWYGPDRVKYLGP---FS 60
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFG 141
++ P YLTGE PGDYG+D GLS P+ F+K WAMLGA G I PE K+
Sbjct: 61 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWV 120
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL- 197
E VWFK G+ + L+Y G + + AV+ +IVL+G E +RI NGL
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRI-NGLP 179
Query: 198 DLED--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254
D+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 DVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 255 ENLAKHLSDPFANN 268
ENL HL +P ANN
Sbjct: 240 ENLLDHLDNPVANN 253
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 130/211 (61%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 54 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 110
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 111 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 170
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 171 VILMGLVEGFRI-NGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 229
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 230 SMFGFFVQAIVTGKGPLENLLDHLDDPVANN 260
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 123/191 (64%), Gaps = 16/191 (8%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGA 142
E P YLTGE PGDYG+D GLS P+ F+K WAMLGA G + PE ++ G
Sbjct: 37 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 96
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 197
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 97 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLG 155
Query: 198 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
+ L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 156 KVTGPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 215
Query: 258 AKHLSDPFANN 268
A HL+DP NN
Sbjct: 216 ADHLADPVNNN 226
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 145/251 (57%), Gaps = 24/251 (9%)
Query: 37 ASNPSTFKPVALFSKKKAAPPAKSKPVAVSP---VNEELAKWYGPDRRIFLPEGLLDRSE 93
AS+ + K ++K+A P + +P + +L WYGPDR +L ++
Sbjct: 8 ASSATVVKQTPFLGQRKSANPLRDVVAMGTPKFTMGNDL--WYGPDRVKYLGP---FSAQ 62
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGAN 143
P YLTGE PGDYG+D GLS P+ F+K WAMLGA G I PE K+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRV 122
Query: 144 CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE 200
E VWFK G+ + L+Y G + + AV+ +IVL+G E +RI D+
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVG 182
Query: 201 D--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 258 AKHLSDPFANN 268
HL +P ANN
Sbjct: 243 LDHLDNPVANN 253
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 131/210 (62%), Gaps = 20/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR +L P YL+GE PGDYG+D GLS P+ F+K WA
Sbjct: 19 WYGEDRPKWLGP---FSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWA 75
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G + G EAVW+K GA + L+Y G + + A++A +
Sbjct: 76 MLGALGCLTPELLAKNGVSFG-EAVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAILASQ 134
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 135 VLLMGAIEGYRVYGGPGGEGLDKVYPGGDYFDPLGLADDPDTFAELKVKEIKNGRLAMFS 194
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 195 MFGFFVQAIVTGKGPLENLESHLADPSVNN 224
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 128/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 49 WYGPDRLKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 106 MLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YRI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 166 VILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H+ +P ANN
Sbjct: 226 MFGFFVQAIVTGKGPLENLLDHIDNPVANN 255
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 129/208 (62%), Gaps = 19/208 (9%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAM 125
YGPDR +L + P YLTGE PGDYG+D GLS P+ F S+WAM
Sbjct: 4 YGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 60
Query: 126 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 182
LGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A ++
Sbjct: 61 LGALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 119
Query: 183 VLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
VL+G E YR+ G E D ++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 120 VLMGFIEGYRVGGGPLGEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMF 179
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GPVENL H++DP NN
Sbjct: 180 GFFVQAIVTGKGPVENLFDHIADPVNNN 207
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 127/211 (60%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +FL P YL GE PGDYG+D GLS P+ F++ WA
Sbjct: 48 WYGPDRPLFLGP---FSGNTPSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G I + AV A +
Sbjct: 105 MLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYLGNPNLIHAQSILAVWAVQ 164
Query: 182 IVLVGGAEYYRITNGL---DLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
+VL+G E YR TNGL L+PGG FDPLGLA DP+ A LKVKE+KNGRLAMF
Sbjct: 165 VVLMGAVEAYR-TNGLPGVGEGGDLYPGGKYFDPLGLADDPETLAELKVKELKNGRLAMF 223
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL++P +NN
Sbjct: 224 SMFGFFVQAIVTGKGPLENLLDHLANPVSNN 254
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 128/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ WA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQ 164
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E YRI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 165 VVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 128/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ WA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQ 164
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E YRI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 165 VVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 128/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 106 MLGALGCITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YRI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 166 VILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 226 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 142/238 (59%), Gaps = 28/238 (11%)
Query: 55 APPAKSKP---VAVSPVNEELAK----WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
A PA + P VA + N ++ WYGPDR +L ++ P YL+GE PGDYG
Sbjct: 22 ARPAVASPLRDVAAAASNGRISMSNELWYGPDRVKYLGP---FSAQTPSYLSGEFPGDYG 78
Query: 108 YDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 157
+D GLS P+ F++ WAMLGA G + PE K+ E VWFK GA +
Sbjct: 79 WDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQI 138
Query: 158 LDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNGLD---LEDKLHPGGP-FD 210
L+Y G + + AV+ ++++L+G E +RI NGLD + L+PGG FD
Sbjct: 139 FSEGGLDYLGNPNLVHAQSILAVLGSQVLLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFD 197
Query: 211 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
PLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 198 PLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 255
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/255 (43%), Positives = 144/255 (56%), Gaps = 22/255 (8%)
Query: 32 TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK--WYGPDRRIFLPEGLL 89
+ A AS+ + K + K A P + VA+ ++ WYGPDR +L
Sbjct: 3 SMAATASSTTVVKATPFLGQTKNANPLRDV-VAMGSARFTMSNDLWYGPDRVKYLGP--- 58
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNK 139
++ P YL GE PGDYG+D GLS P+ F+K WAMLGA G I PE K
Sbjct: 59 FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEK 118
Query: 140 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN- 195
+ E VWFK G+ + L+Y G + + AV+ ++VL+G E +RI
Sbjct: 119 WVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 178
Query: 196 -GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253
G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP
Sbjct: 179 PGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 254 VENLAKHLSDPFANN 268
+ENL HL +P ANN
Sbjct: 239 LENLLDHLDNPVANN 253
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 141/254 (55%), Gaps = 22/254 (8%)
Query: 34 APGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + A P P+ WYGPDR +L
Sbjct: 4 AATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGP---F 60
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKF 140
++ P YLTGE PGDYG+D GLS P+ F++ WAMLGA G I PE K+
Sbjct: 61 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 120
Query: 141 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN-- 195
E +WFK GA + L+Y G + + AV+ ++VL+G E +RI
Sbjct: 121 LRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 180
Query: 196 GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254
G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 181 GVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 255 ENLAKHLSDPFANN 268
ENL HL +P ANN
Sbjct: 241 ENLLDHLDNPVANN 254
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 128/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 45 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 161
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 162 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 222 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 131/217 (60%), Gaps = 23/217 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K W
Sbjct: 49 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 104
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFS 223
Query: 239 MLGFFLQAYVTGEGPVEN--LAKHLSDPFANNLLTVI 273
M GFF+QA VTG+GP+EN + + P L T +
Sbjct: 224 MFGFFVQAIVTGKGPIENSLITLRIQCPTCMGLRTTL 260
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 129/211 (61%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K WA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E YRI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 167 VILMGLVEGYRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 226 SMFGFFVQAIVTGKGPLENLLDHLDNPVANN 256
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 129/211 (61%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ WA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 102
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 103 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 162
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 163 VLLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 221
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 222 SMFGFFIQAIVTGKGPLENLLDHLDDPVANN 252
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 128/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 45 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 161
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 162 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 222 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 129/211 (61%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 43 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 99
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 100 MLGALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQ 159
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 160 VLLMGAVEGFRI-NGLDGVGNGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 218
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+EN HL +P ANN
Sbjct: 219 SMFGFFVQAIVTGKGPLENWLDHLDNPVANN 249
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 129/211 (61%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K WA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 106 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E YRI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 166 VILMGLVEGYRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 224
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 225 SMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 131/212 (61%), Gaps = 23/212 (10%)
Query: 75 WYGPDRRIFL-PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGPDR +L P + + P YLTGE PGDYG+D GLS P+ F+K W
Sbjct: 47 WYGPDRVKYLGPFSV----QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G I PE K+ E VWFK G+ + L+Y G + + AV+
Sbjct: 103 AMLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 181 EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 236
+++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAM
Sbjct: 163 QVILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 221
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
F+M GFF+QA VTG+GP+ENL H+ DP ANN
Sbjct: 222 FSMFGFFVQAIVTGKGPLENLLDHIDDPVANN 253
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 133/219 (60%), Gaps = 23/219 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KW 123
+WYGPDR +LP+ L + +P+YLTGE PGDYG+D GLS P+ F+ +W
Sbjct: 124 EWYGPDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARW 181
Query: 124 AMLGAAGFIIPEAFN-KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-- 180
AMLGA G I PE +G E VWFK GAL+L+ +++Y G ++ +
Sbjct: 182 AMLGALGCIFPEILAMNYGVGL-EEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAA 240
Query: 181 -EIVLVGGAEYYRIT----NGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRL 234
+++L+GGAE YR + NG + DK+HPGG F+PL KD A LKVKEIKNGRL
Sbjct: 241 AQVLLMGGAEAYRASGVAPNGEEF-DKMHPGGYYFNPLKFGKDEADLAELKVKEIKNGRL 299
Query: 235 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
AMF+MLGF++QA TG GP++NL H +D N+ +
Sbjct: 300 AMFSMLGFYIQAATTGNGPLQNLVDHRADAANENIFKYV 338
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 129/211 (61%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K WA
Sbjct: 51 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 107
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 108 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 167
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
+VL+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 168 VVLMGLVEGFRI-NGLDGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMF 226
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 227 SMFGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 131/212 (61%), Gaps = 23/212 (10%)
Query: 75 WYGPDRRIFL-PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGPDR +L P + + P YLTGE PGDYG+D GLS P+ F+K W
Sbjct: 47 WYGPDRVKYLGPFSV----QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G I PE K+ E VWFK G+ + L+Y G + + AV+
Sbjct: 103 AMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 181 EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 236
+++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAM
Sbjct: 163 QVILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 221
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
F+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 222 FSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 131/212 (61%), Gaps = 23/212 (10%)
Query: 75 WYGPDRRIFL-PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGPDR +L P + + P YLTGE PGDYG+D GLS P+ F+K W
Sbjct: 47 WYGPDRVKYLGPFSV----QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRW 102
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G I PE K+ E VWFK G+ + L+Y G + + AV+
Sbjct: 103 AMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 181 EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 236
+++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAM
Sbjct: 163 QVILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 221
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
F+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 222 FSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/189 (49%), Positives = 120/189 (63%), Gaps = 15/189 (7%)
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPE 147
LTGE PGDYG+D GLS P+ F K WAMLGA G + PE ++G E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 148 AVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGLDLE--DK 202
+VWF+ GA + L+Y G I+ + VI++++L+G E YR+ G E D
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDP 120
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG+GPVEN A+H++
Sbjct: 121 LYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVA 180
Query: 263 DPFANNLLT 271
DPF N +
Sbjct: 181 DPFTANAFS 189
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 128/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 6 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 62
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 63 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 122
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 123 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFS 182
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 183 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 212
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 128/226 (56%), Gaps = 18/226 (7%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK- 122
A V +WYGP+R FL G S P YL GE PGDYG+D GLS P+ F++
Sbjct: 18 ATRQVTRASVEWYGPNRPQFL--GPFSGS-TPSYLKGEYPGDYGWDTAGLSADPETFARY 74
Query: 123 ---------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 173
WAMLGA G + PE G EAVWFK GA + L+Y G I+
Sbjct: 75 RELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEGGLDYLGNPSLIH 134
Query: 174 ---LVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+V ++ ++ L+G E YR+ G E D L+PG FDPLGLA DPD F+ LKVKE
Sbjct: 135 AQSIVAVLLTQLTLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFSELKVKE 194
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
+KNGRLAM +M GFF+Q VT +GP+ENL HL+ P A N + +
Sbjct: 195 LKNGRLAMVSMFGFFVQGIVTKKGPIENLNDHLASPDATNFWAIYA 240
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 147/265 (55%), Gaps = 28/265 (10%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P ++ + SP WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKPKPAR--SGSP-------WYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGA 128
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K WA+
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVG 108
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 185
G + PE + G G E VWFK G+ + L++ G + + A+ A ++VL+
Sbjct: 109 LGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLM 167
Query: 186 GGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G E Y + G ++ D L+ GG FDPLGL DP++FA LKVKEIKNGRLAMF+M GFF
Sbjct: 168 GAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFF 227
Query: 244 LQAYVTGEGPVENLAKHLSDPFANN 268
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 228 VQAIVTGKGPIENLADHLTDPVNNN 252
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 129/211 (61%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ WA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 107 MLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 167 VLLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 226 SMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 129/211 (61%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K WA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 103 MLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQ 162
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
+VL+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 163 VVLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 221
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 222 SMFGFFVQAIVTGKGPLENLLDHLDDPVANN 252
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 145/260 (55%), Gaps = 25/260 (9%)
Query: 29 AVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP----VNEELAKWYGPDRRIFL 84
A A AS+ S +P ++ ++ V++ + EL WYGPDR +L
Sbjct: 2 ASTVMAATASSSSVLRPTPFLGQRGSSANPLKDVVSMGNGKYIMGNEL--WYGPDRVKYL 59
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIP 134
++ P YL GE PGDYG+D GLS P+ F++ WAMLGA G I P
Sbjct: 60 GP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITP 116
Query: 135 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 191
E K+ E VWFK GA + L+Y G + + AV+ ++VL+G E +
Sbjct: 117 EVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGF 176
Query: 192 RITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 177 RINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
Query: 249 TGEGPVENLAKHLSDPFANN 268
TG+GP+ENL HL +P ANN
Sbjct: 237 TGKGPLENLLDHLDNPVANN 256
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 123/209 (58%), Gaps = 24/209 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR +L G RS P YL GE PGDYG+D GLS P+ FS+ WA
Sbjct: 66 WYGADRPGYL--GAFTRS--PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWA 121
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 181
MLGA G ++PE ++ WF GA + + Y G IN ++ V +
Sbjct: 122 MLGALGIVVPELLDQTN-----HVAWFDAGATIFGPKGIQYLGVPGLINAKNIIATVAVQ 176
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G E DK++PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 177 VILMGAIEGYRVNGGPAGEGLDKVYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSN 236
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ NL HL++P NN
Sbjct: 237 FGFFVQAIVTGKGPIANLNDHLANPTVNN 265
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 130/217 (59%), Gaps = 28/217 (12%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
+WYG +R +L +S P YLTGE PGDYG+D GLS P F ++W
Sbjct: 88 EWYGENRPKYLGP---FQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARW 144
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA--- 180
AMLGA G I PE N G N VWFK G + + N ++Y G NLV A A
Sbjct: 145 AMLGALGCIFPELLNSAGFNL---PVWFKAGGTIFE-NGIDYLGNP---NLVHAQSALAV 197
Query: 181 ---EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
++VL+G +E YR G E D L+PGG FDPLG AKDP + A LKVKEIKNGRLA
Sbjct: 198 LSVQVVLMGASEAYRFNGGPLGEPADVLYPGGAFDPLGFAKDPSKAAELKVKEIKNGRLA 257
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
M AMLG+++QA TG+GP+ENL++HL+DP NN V
Sbjct: 258 MTAMLGYYVQALATGKGPIENLSEHLADPSKNNGFAV 294
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 132/226 (58%), Gaps = 26/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A PV+ SP WYGPDR +L E P YLTGE P G P P
Sbjct: 40 ATKAPVSSSP-------WYGPDRVKYLGP---FSGEPPSYLTGEFPVTTGGTPPVCQPDP 89
Query: 118 DDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+ F+K WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHARWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 168 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 222
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEITDPLYPGGSFDPLGLADDPEAFA 208
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKEIKNGRLAMF+M GF++QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPLENLADHLADPVNNN 254
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
WYGPDR P+ L SE P YLTGE PGDYG++ G+S P+ F S+W
Sbjct: 13 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRW 68
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 180
AMLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 69 AMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 127
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E Y + G E DK++PGG F+PLGLA DPD A LKVKE+KNGRLAMF+
Sbjct: 128 QVVLMGFVEGYGVGGGPLGEGLDKVYPGGAFEPLGLADDPDTAAELKVKELKNGRLAMFS 187
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 188 MFGFFVQAIVTGKGPIENLFDHVADPVANN 217
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 127/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE GDYG+D GLS P+ F++ WA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 106 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YRI G+ + L+PGG FDPLGLA DP FA L+VKEIKNGRLAMF+
Sbjct: 166 VILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELRVKEIKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 226 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 128/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 164
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 165 VVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 224
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H+ +P ANN
Sbjct: 225 MFGFFVQAIVTGKGPLENLLDHIDNPVANN 254
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 128/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 103 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 162
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 163 VVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 222
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H+ +P ANN
Sbjct: 223 MFGFFVQAIVTGKGPLENLLDHIDNPVANN 252
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 132/240 (55%), Gaps = 36/240 (15%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK---------PDD 119
E LAKWYGPDR+++LP GLL ++++P YL G + GDYG+DP GL
Sbjct: 96 KEALAKWYGPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGADGAIKQYRVAEVI 155
Query: 120 FSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 179
++WAML G +IPEA P VW +TG + LDG T F PI VFA +
Sbjct: 156 HARWAMLAIPGVVIPEALGL------PGGVWTETGKVFLDGETGRPFFLENPI--VFAAV 207
Query: 180 AEIVLVGGAEYYRIT----------------NGLDLEDKLHPGGPFDPLGLAKDPDQFAL 223
++ L+ G E +R + + D ++PGGP D +A +P AL
Sbjct: 208 -QVALMAGVEQFRSSGEGPAGFVPFKGKFDESAFKGLDPINPGGPLDFFNVASNPQDLAL 266
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
LKVKEIKNGRLAM AMLG F+Q TGEGP N KH++DPF N +T+ + +R P L
Sbjct: 267 LKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVTLQA--VDRTPVL 324
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 127/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 103 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQ 162
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 163 VVLMGLVESFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTLAELKVKEIKNGRLAMFS 222
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 223 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 252
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 123/206 (59%), Gaps = 39/206 (18%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGA G + PE K G G EAVWFK ++A +++VL
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKA---------------------IWA--SQVVL 142
Query: 185 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GF
Sbjct: 143 MGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 202
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANN 268
F+QA VTG+GP+ENL HL+DP ANN
Sbjct: 203 FVQAIVTGKGPIENLFDHLADPTANN 228
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 139/246 (56%), Gaps = 32/246 (13%)
Query: 49 FSKK----KAAPPAKS---KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
FS+K A PPA+ K A P ++YGP+R +L G + P Y +
Sbjct: 7 FSRKALQVSARPPARRGTGKTAASRPPPAPGIEFYGPNRAKWL--GPYSENATPAYRLAK 64
Query: 102 VPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWF 151
PGDYG+D GLS P+ F ++WAMLGA G I PE K G G EAVWF
Sbjct: 65 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFG-EAVWF 123
Query: 152 KTGALLLDGNTLNYFGKNIPINLVFAVIA-------EIVLVGGAEYYRITNGLDLE--DK 202
K GA + L+Y G +LV A +++L+G E YR+ G E D
Sbjct: 124 KAGAQIFSEGGLDYLGNP---SLVHAQNIRRHPGRFKVILMGLVEGYRVNGGPAGEGLDP 180
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL HLS
Sbjct: 181 LYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLS 240
Query: 263 DPFANN 268
+P NN
Sbjct: 241 NPTVNN 246
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 127/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 52 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 108
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 109 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 168
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E +RI G+ + L+PG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 169 VLLMGLVEGFRINGLPGVGEGNNLYPGDQYFDPLGLADDPATFAELKVKEIKNGRLAMFS 228
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 229 MFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 126/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 49 WYGPDRLKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 106 MLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YRI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 166 VILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 225
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M FF+QA VTG+G +ENL H+ +P ANN
Sbjct: 226 MFRFFVQAIVTGKGSLENLLDHIDNPVANN 255
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 150/288 (52%), Gaps = 44/288 (15%)
Query: 27 SSAVRTSAPG-----ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
+ V+ +AP A P+ K + KK K+ PV + +L+KWYGP R+
Sbjct: 17 AKTVKKTAPAKKAVPAKKPTPAKKAPVTVKKTVK---KAAPVKTTVKTADLSKWYGPQRK 73
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK---------PDDFSKWAMLGAAGFI 132
++LP GLL ++IP YL G++ GDYG+DP GL ++WAML G +
Sbjct: 74 LYLPSGLLTTADIPSYLDGKLAGDYGFDPLGLGADGAIKQYRVAEVIHARWAMLAVPGIV 133
Query: 133 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 192
IPEA N G + W +TG + L+G+T FG + L AV IVL+GGAE +R
Sbjct: 134 IPEALNIAGGD------WRETGKVFLEGST-GRFGPA-ELWLGIAVAPLIVLMGGAEKFR 185
Query: 193 IT---------------NGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
G D D ++PGGP D +A P +LKVKEIKNGRLA
Sbjct: 186 SDPASAPSGFVPFKGSFTGKDFAKLDPINPGGPLDFYNVAATPQDLEILKVKEIKNGRLA 245
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
M AMLG F+Q TGEGP N KH++DPF N +T+ + +R P L
Sbjct: 246 MIAMLGVFVQGATTGEGPAANWGKHVADPFGYNFVTLNA--VDRTPVL 291
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 128/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ WA
Sbjct: 13 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 69
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E +WFK GA + L+Y G + + AV+ +
Sbjct: 70 MLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 129
Query: 182 IVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+VL+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 130 VVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 189
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 190 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 219
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 151/296 (51%), Gaps = 47/296 (15%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPV-------AVSPVNEELAKW 75
P+ ++ V+T A P P+ +K AAP K+ PV V+ + +KW
Sbjct: 50 PVKKTAPVKTVKKAAPAPKKTVPMKTVVRK-AAPVRKAAPVRKAGKASGVNQAGSDKSKW 108
Query: 76 YGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDPFGLSKKPD---------DFSKWAM 125
YGP+RR++LP GLLD +++P Y+ G + GDYG+DP L K ++WAM
Sbjct: 109 YGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQLGKDGKIAQYRIAEVQHARWAM 168
Query: 126 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 185
L G +IPEA G N W +TG + LDG I N E+ L+
Sbjct: 169 LAVPGVVIPEALGVPGGN------WTETGKVFLDGEAGR---PEILGNPYLFTAIEVALL 219
Query: 186 GGAEYYRITN---------------GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 228
G E YR G D + D ++PGGP D L +A P+ A+LKVKE
Sbjct: 220 AGVEGYRSGKLEAPAGFAPIYGKFEGKDFKGLDPINPGGPLDFLNVASTPEDLAILKVKE 279
Query: 229 IKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
IKNGRLAM AMLG F+Q T GEGP N AKH++DPFA N +T+ + +R P L
Sbjct: 280 IKNGRLAMIAMLGVFVQGATTGGEGPATNWAKHVADPFAYNFVTISA--IDRTPVL 333
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 124/209 (59%), Gaps = 27/209 (12%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE GLS P+ F S+WA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWA 96
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 97 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 155
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D ++PGG FDPLGLA DP+ A LKVKE+KNGRLAMF+M
Sbjct: 156 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSM 215
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 216 FGFFVQAIVTGKGPLENLADHLADPVNNN 244
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 128/211 (60%), Gaps = 21/211 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L + P YLTGE PG+YG+D GLS P+ F+K WA
Sbjct: 3 WYGPDRVKYLGP---FSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWA 59
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 60 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 119
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 120 VILMGLVEGLRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 178
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 179 SMFGFFVQAIVTGKGPLENLLDHLDNPVANN 209
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 126/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR FL ++ P YL GE PGDYG+D GLS P+ F++ WA
Sbjct: 45 WYGPDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWA 101
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 181
MLGA G + PE +K+ E VWFK G+ + L+Y G + + A+ A +
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 182 IVLVGGAEYYRITNGLDLED--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YRI D+ + L+PGG FDPLG A DP+ A LKVKEIKNGRLAMF+
Sbjct: 162 VILMGLVEGYRINGLPDVGEGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 222 MFGFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 123/208 (59%), Gaps = 19/208 (9%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K V + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 9 KSATTKKVASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 65
Query: 121 ----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 169
S+WAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 66 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPS 124
Query: 170 -IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLK 225
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 125 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELK 184
Query: 226 VKEIKNGRLAMFAMLGFFLQAYVTGEGP 253
VKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 185 VKELKNGRLAMFSMFGFFVQAIVTGKGP 212
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 126/210 (60%), Gaps = 19/210 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR FL ++ P YL GE PGDYG+D GLS P+ F++ WA
Sbjct: 45 WYGPDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWA 101
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 181
MLGA G + PE +K+ E VWFK G+ + L+Y G + + A+ A +
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 182 IVLVGGAEYYRITNGLDLED--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YRI D+ + L+PGG FDPLG A DP+ A LKVKEIKNGRLAMF+
Sbjct: 162 VILMGLVEGYRINGLPDVGEGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFS 221
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 222 MFGFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 125/211 (59%), Gaps = 20/211 (9%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKW---------- 123
++YGPD G + + P TGE PGDYG+D GLS P+ F ++
Sbjct: 56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARC 111
Query: 124 AMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVI 179
+LGA G + PE ++ G G A+WFK GA + LNY G I N+V +
Sbjct: 112 GLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLA 171
Query: 180 AEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF
Sbjct: 172 VQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMF 231
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
A LGFF+QA VTG+GP+ENL HL++P NN
Sbjct: 232 ACLGFFVQAIVTGKGPIENLTDHLANPAENN 262
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 120/196 (61%), Gaps = 19/196 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 165
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 240 LGFFLQAYVTGEGPVE 255
GFF+QA VTG P
Sbjct: 226 FGFFVQAIVTGGEPCR 241
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/183 (50%), Positives = 117/183 (63%), Gaps = 16/183 (8%)
Query: 101 EVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVW 150
E PGDYG+D GLS P+ FSK WAMLGA G + PE + G G EAVW
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVW 59
Query: 151 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHP 205
FK G+ + L+Y G + + V A +++L+G E YRI G ++ D L+P
Sbjct: 60 FKAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAGGPLGEVVDPLYP 119
Query: 206 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
GG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 120 GGSFDPLGLAEIPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 179
Query: 266 ANN 268
NN
Sbjct: 180 NNN 182
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 128/223 (57%), Gaps = 31/223 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWA 124
WYG DR +L D PEYLTGE PGDYG+D GL + P F+ +WA
Sbjct: 95 WYGGDRPRWLGPVPYD---YPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 151
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 177
ML A G ++PE + FG E VW+K G L G+ L+Y G IP +V
Sbjct: 152 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLG--IPGFRIAGGQGVVVI 209
Query: 178 VIAEIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 228
I + +L+ G EY R LE D +PGGP FDPLGL+KDP F LKVKE
Sbjct: 210 AICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKE 269
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
IKNGRLAM A GF++QA VTG+GPV+NL +HLSDP NN+L+
Sbjct: 270 IKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILS 312
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 144/255 (56%), Gaps = 31/255 (12%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
KK +A SK A++ + + WYG +R +L D P+YLTGE+PGDYG+D
Sbjct: 89 KKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYD---YPKYLTGELPGDYGFDI 145
Query: 111 FGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
GLS+ P F K WAML + G ++PE + FGA E +W++ G L G
Sbjct: 146 AGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKG 205
Query: 161 NTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITNGLDLE--------DKLHP 205
+TL+Y G IP ++ I + +L+ G EY R LE D +P
Sbjct: 206 DTLDYLG--IPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYP 263
Query: 206 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
GG FDPL L+KD + F LKVKEIKNGRLAM A LGF+ QA +TG+GPV+NL H++DP
Sbjct: 264 GGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLNHIADP 323
Query: 265 FANNLLTVISGNAER 279
F NN L++++ + R
Sbjct: 324 FHNNFLSLLNSSFSR 338
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 117/191 (61%), Gaps = 18/191 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGP+R FL + P YLTGE PGDYG+D GLS P+ F ++WA
Sbjct: 37 WYGPERPQFLGP---FSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWA 93
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AE 181
MLGA G + PE K+G E+VWFK G+ + L+Y G + + + A++ +
Sbjct: 94 MLGALGCVTPEILAKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSSLVHAQYILAILGCQ 153
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 154 VLLMGAIEAYRVNGGPLGEGLDPLYPGGQFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 213
Query: 240 LGFFLQAYVTG 250
GF++QA VTG
Sbjct: 214 FGFYVQALVTG 224
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 130/224 (58%), Gaps = 22/224 (9%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF + +KK +++ + +P N WYGPDR FL + P YLTGE
Sbjct: 8 TFIGSQVANKKMVTSMRRTQKKSSAPDN----VWYGPDRPQFLGP---FSGDCPSYLTGE 60
Query: 102 VPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWF 151
PGDYG+D GLS P+ F ++WAMLGA G + PE +K+G E+VWF
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWF 120
Query: 152 KTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNGLDLE--DKLHPG 206
K G+ + L+Y G + + + A++ +++L+G E YR+ G E D L+PG
Sbjct: 121 KAGSQIFQEGGLDYLGNSNLVHAQSILAILGCQVLLMGAIEAYRVNGGPLGEGLDPLYPG 180
Query: 207 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250
FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG
Sbjct: 181 DKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTG 224
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/181 (53%), Positives = 116/181 (64%), Gaps = 16/181 (8%)
Query: 103 PGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFK 152
PGDYG+D GLS P+ F+K WAMLGA G + PE K G G EAVWFK
Sbjct: 4 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFK 62
Query: 153 TGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGG 207
GA + L+Y G I + A+ A ++VL+G E YR+ G E D L+PGG
Sbjct: 63 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGG 122
Query: 208 PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 267
FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP AN
Sbjct: 123 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTAN 182
Query: 268 N 268
N
Sbjct: 183 N 183
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 129/223 (57%), Gaps = 31/223 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWA 124
WYG DR +L D PE+LTGE PGDYG+D GL + P F+ +WA
Sbjct: 94 WYGGDRPRWLGPVPYD---YPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWA 150
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 177
ML A G +IPE + FG E VW+K G L G+TL+Y G IP ++
Sbjct: 151 MLAALGVVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVI 208
Query: 178 VIAEIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 228
I + +L+ G EY R LE D +PGG FDPLGL+KDP F LKVKE
Sbjct: 209 AICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKE 268
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
IKNGRLAM A LGF++QA VTG+GPV+NL +HLSDP NN+L+
Sbjct: 269 IKNGRLAMVAWLGFYIQAAVTGKGPVQNLVEHLSDPLHNNILS 311
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 117/195 (60%), Gaps = 19/195 (9%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P + L++WYGPDR +L G L ++P YLTGE+PGDYG+D GL P ++
Sbjct: 143 APAADNLSQWYGPDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADPVTLARYRE 199
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 173
WAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 200 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 259
Query: 174 -LVFAVIAEIVLVGGAEYYRITNGL---DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 229
+V ++ + ++G E YR G D D+L+PGGPFDPLGLA DPD FA LKVKE+
Sbjct: 260 SVVLTFLSTLAIMGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEV 319
Query: 230 KNGRLAMFAMLGFFL 244
KNGRLAM AMLGF++
Sbjct: 320 KNGRLAMVAMLGFYV 334
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 118/182 (64%), Gaps = 17/182 (9%)
Query: 103 PGDYGYD-PFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWF 151
PGDYG+D GLS P+ F S+WAMLGA G + PE + G G EAVWF
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWF 59
Query: 152 KTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPG 206
K GA + L+Y G + + A+ A +++L+G E YRI G ++ D L+PG
Sbjct: 60 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPG 119
Query: 207 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 266
G FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 120 GSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 179
Query: 267 NN 268
NN
Sbjct: 180 NN 181
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 140/261 (53%), Gaps = 43/261 (16%)
Query: 52 KKAAPPAKS--KPVAVSPVNEELAKWYGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGY 108
KKAAP KS KP S +LAKWYG +RR +LP GLLD +++P Y+ G + GDYG+
Sbjct: 60 KKAAPVKKSSGKP---SQAGGDLAKWYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGF 116
Query: 109 DPF--GLSKKPDDF-------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 159
DP G K +D+ ++WAML G +IPEA P VW +TG + LD
Sbjct: 117 DPLKLGADGKINDYRAAEVIHARWAMLAIPGIVIPEALGI------PGGVWTETGKVFLD 170
Query: 160 GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------------NGLDLE--DK 202
G PI +FA I +I L E YR +G D D
Sbjct: 171 GEAGRPEILQNPI--IFAGI-QIALFAAVEGYRSGKVAPPEGFVPGKGKFSGSDFAGLDP 227
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
++PGGP D +A P+ A+LKVKEIKNGRLAM AMLG F+Q TGEGP N KH++
Sbjct: 228 INPGGPLDFFNVASTPEDLAILKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVA 287
Query: 263 DPFANNLLTVISGNAERAPTL 283
DPF N +T+ + ER P L
Sbjct: 288 DPFGYNFVTISA--IERTPVL 306
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 131/223 (58%), Gaps = 31/223 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWA 124
WYG R +L G L R + PE+L GE PGDYG+D GL + P F+ +WA
Sbjct: 90 WYGGARPRWL--GPL-RYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 146
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 177
ML A G ++PE + FG E VW+K G L G+TL+Y G IP ++
Sbjct: 147 MLAALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGIIVI 204
Query: 178 VIAEIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 228
I +++L+ G EY R LE D +PGG FDPLGL+KDP F KVKE
Sbjct: 205 AICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEEFKVKE 264
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
IKNGRLAM A +GF++QA VTG+GPV+NLA+HLSDP NN+L+
Sbjct: 265 IKNGRLAMVAWIGFYIQAAVTGKGPVQNLAEHLSDPLHNNILS 307
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 143/255 (56%), Gaps = 31/255 (12%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
KK +A SK A++ + + WYG +R +L D P+YLTGE+PGDYG+D
Sbjct: 89 KKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYD---YPKYLTGELPGDYGFDI 145
Query: 111 FGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
GLS+ P F K WAML + G ++PE + FGA E +W++ G L G
Sbjct: 146 AGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKG 205
Query: 161 NTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITNGLDLE--------DKLHP 205
+TL+Y G IP ++ I + +L+ G EY R LE D +P
Sbjct: 206 DTLDYLG--IPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYP 263
Query: 206 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
GG FDPL L+KD F LKVKEIKNGRLAM A LGF+ QA +TG+GPV+NL H++DP
Sbjct: 264 GGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADP 323
Query: 265 FANNLLTVISGNAER 279
F NN L++++ + R
Sbjct: 324 FHNNFLSLLNSSFSR 338
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 136/263 (51%), Gaps = 47/263 (17%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P S F + +K A P KP A + WYG
Sbjct: 1 MAAATMALTSRALVGKPATSTRDVFGEGRITMRKTAGKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGA 128
DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K WAMLGA
Sbjct: 52 DRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 185
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLM 167
Query: 186 GGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 245
G E YRI A DP+ FA LKVKEIKNGRLAMF+M GFF+Q
Sbjct: 168 GAVEGYRI---------------------ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 206
Query: 246 AYVTGEGPVENLAKHLSDPFANN 268
A VTG+GPVENLA HL+DP NN
Sbjct: 207 AIVTGKGPVENLADHLADPVNNN 229
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 133/240 (55%), Gaps = 39/240 (16%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A+ A S +E +W GP +P E P +LTGE PGDYG+D GL + P
Sbjct: 92 ARQARTASSWYGDERPRWLGP-----VP------YEYPAHLTGEYPGDYGFDIAGLGRDP 140
Query: 118 DDFS----------KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
F+ +WAML A G ++PE + FG E VW+K G L G+TL+Y G
Sbjct: 141 VAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLG 200
Query: 168 KNIP-------INLVFAVIAEIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDP 211
IP ++ I + +L+ G EY R LE D +PGG FDP
Sbjct: 201 --IPGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDP 258
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
LGL+KDP F LKVKEIKNGRLAM A LGF++QA VTG+GP++NL +HLSDP NN+L+
Sbjct: 259 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILS 318
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 140/260 (53%), Gaps = 42/260 (16%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDP 110
+KAAP KS V +L+KWYGP+RR++LP GLLD +++P YL G + GDYG+DP
Sbjct: 63 RKAAPVRKSSGKRGDGV--DLSKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDP 120
Query: 111 FGLSK--KPDDF-------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 161
L K K + + ++WAML G +IPEA P VW +TG + LDG
Sbjct: 121 LQLGKDGKVEQYRAAEVIHARWAMLAIPGIVIPEALGI------PGGVWTETGKVFLDGE 174
Query: 162 TLNYFGKNIPIN-LVFAVIAEIVLVGGAEYYRIT---------------NGLDLE--DKL 203
I N +FA I +I L E YR +G D D +
Sbjct: 175 AGR---PEILQNPYLFAAI-QIGLFAAVEGYRAGKAPAPDGFVPFKGKFSGSDFSGLDPI 230
Query: 204 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 263
+PGGP D +A PD A+LKVKEIKNGRLAM AMLG F+Q TGEGP N KH++D
Sbjct: 231 NPGGPLDFFNVAATPDDLAVLKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVAD 290
Query: 264 PFANNLLTVISGNAERAPTL 283
PF N +T+ + ER P L
Sbjct: 291 PFGYNFVTISA--IERTPVL 308
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 127/235 (54%), Gaps = 49/235 (20%)
Query: 38 SNPSTFKPVALFSKKKAAP---PAKSKPVAVSPVN----------EELAKWYGPDRRIFL 84
S K ALFSK K+AP P+ K A + + L KWYGP R +FL
Sbjct: 14 STSRVVKVNALFSKGKSAPKRSPSPKKSAAGTKKTGGWLGGEGGAQNLDKWYGPSRVLFL 73
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIP 134
P GLL+RS++P YLTG++ GDYGYDP GL K P+ K WAML AAG IIP
Sbjct: 74 PSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARWAMLAAAGMIIP 133
Query: 135 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA-EIVLVGG 187
E GA+ A WF+TGA +L+G TLNYF +P +V FA++A E+ L+G
Sbjct: 134 EGLAANGADI-KGATWFETGAEMLNGGTLNYFA--VPWAIVSNPLPLFAIVAVEVGLMGA 190
Query: 188 AEYYRITNG----------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 226
AE YR T D D LHPGGPFDPLGLA DP+ F LKV
Sbjct: 191 AENYRRTGTGPKGYSPGVGNFESSVFDGLDSLHPGGPFDPLGLADDPEVFQELKV 245
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/197 (50%), Positives = 122/197 (61%), Gaps = 20/197 (10%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF-------- 120
NE+L +YGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F
Sbjct: 40 NEKLGAFYGPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELEL 96
Query: 121 --SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 176
++WAMLGA G + PE K G E VWFK GA + L+Y G I +
Sbjct: 97 IHARWAMLGALGCVTPELLAKNGTPI-AEPVWFKAGAQIFQEGGLDYLGNAGLIHAQSIL 155
Query: 177 AVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNG 232
A +A +++L+G E YR+ G E DKLHPGG F DPLGLA+DPD FA LKVKEIKNG
Sbjct: 156 ATLAVQVILMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNG 215
Query: 233 RLAMFAMLGFFLQAYVT 249
RLAMF+M GFF+QA VT
Sbjct: 216 RLAMFSMFGFFVQAIVT 232
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 142/258 (55%), Gaps = 39/258 (15%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEEL--------------------AKWYGPDRRIFLP 85
+A S ++P KPV ++P ++EL + WYGPDR +L
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQELGASRFTTRKSATTKKVASSGSPWYGPDRVKYLG 60
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGAAG---------FIIPEA 136
E P YLTGE PGDYG+D GLS P+ F+K L ++ + ++
Sbjct: 61 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNVSLRSSTPDGPCWVPWDVSSQS 117
Query: 137 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA----EIVLVGGAEYYR 192
F + FK G+ + L+Y G N + +++A +++L+G E YR
Sbjct: 118 FCPVTVLNSVKLCGFKAGSQIFSEGGLDYLG-NPSLGSRQSILAIWATQVILMGAVEGYR 176
Query: 193 ITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250
I G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 177 IAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 251 EGPVENLAKHLSDPFANN 268
+GP+ENLA HLSDP NN
Sbjct: 237 KGPLENLADHLSDPVNNN 254
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 115/180 (63%), Gaps = 16/180 (8%)
Query: 104 GDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 153
GDYG+D GLS P+ F S+WAMLGA G + PE K G G EAVWFK
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKA 59
Query: 154 GALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGP 208
GA + L+Y G + + A+ A ++VL+G E YR+ G E DK++PGG
Sbjct: 60 GAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA 119
Query: 209 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
FDPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 120 FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 179
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 145/254 (57%), Gaps = 35/254 (13%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRS-EIPEYLTGEVPGDY 106
L +KK A SK A++ + + WYG +R P L S + P YL+GE+PGDY
Sbjct: 89 LEERKKLAVQQSSKFKALAQKARKESFWYGEER----PRWLGPISYQYPTYLSGELPGDY 144
Query: 107 GYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GL++ P F ++WAML A G +IPE + GA E VW++ G
Sbjct: 145 GFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGAFHFIEPVWWRVGYS 204
Query: 157 LLDGNTLNYFGKNIPINLVFA------VIA--EIVLVGGAEYYRITNGLDLE-------- 200
L G+TL+Y G IP L FA VIA + +L+ G EY R LE
Sbjct: 205 KLKGDTLDYLG--IP-GLHFAGGQGVLVIAFCQAILMVGPEYARYCGIEALEPLGIYLPG 261
Query: 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 259
D +PGG FDPL L+KDP F LKVKEIKNGRLAM A LGF++QA +TG+GPVENL +
Sbjct: 262 DINYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYIQAALTGKGPVENLVE 321
Query: 260 HLSDPFANNLLTVI 273
H+SDP NNL + +
Sbjct: 322 HISDPLHNNLFSTL 335
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 133/248 (53%), Gaps = 31/248 (12%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
K AA ++S A + + W+G DR +L D P++L G PGDYG+D
Sbjct: 76 KAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPYD---YPDHLQGSFPGDYGFDIA 132
Query: 112 GLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 161
GL K P F K WAML A G +IPE KF E+VW++ G L+G+
Sbjct: 133 GLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVNFAESVWWRVGYAKLEGD 192
Query: 162 TLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITNGLDLE--------DKLHPG 206
TL+Y G IP ++ I + +L+ G EY R LE D +PG
Sbjct: 193 TLDYLG--IPGLHIVGAQGIIVIAICQFLLMVGPEYARYCGIEALEPLGIYLPGDINYPG 250
Query: 207 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
G FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA VT +GP+ENL HL DP
Sbjct: 251 GVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPL 310
Query: 266 ANNLLTVI 273
NN +T I
Sbjct: 311 HNNAVTSI 318
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 136/248 (54%), Gaps = 31/248 (12%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
K AA ++S A + + W+G DR +L D P++L G PGDYG+D
Sbjct: 76 KAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPYD---YPDHLQGSFPGDYGFDIA 132
Query: 112 GLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 161
GL K P F K WAML A G +IPE KF E+VW++ G L+G+
Sbjct: 133 GLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVKFAESVWWRVGYAKLEGD 192
Query: 162 TLNYFGKNIP-INLVFA------VIAEIVLVGGAEYYRITNGLDLE--------DKLHPG 206
TL+Y G IP +++V A I + +L+ G EY R LE D +PG
Sbjct: 193 TLDYLG--IPGLHIVGAQGILVIAICQFLLMVGPEYARYCGIEALEPLGIYLPGDINYPG 250
Query: 207 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
G FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA VT +GP+ENL HL DP
Sbjct: 251 GVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPL 310
Query: 266 ANNLLTVI 273
NN +T I
Sbjct: 311 HNNAVTSI 318
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 155/302 (51%), Gaps = 35/302 (11%)
Query: 2 ASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVA--LFSKKKAAPPAK 59
+ +A + + + + + L L S+ T+ +N S + + L KKK A
Sbjct: 34 SRIAVTRSRSICRASWQELAGVLVFSAIPFTAVKAIANSSLGESLRRRLEEKKKEAVENS 93
Query: 60 SKPVAVSPVNEELAKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
S+ A + +KWYG +R R F P + P YLTGE+PGDYG+D GL K
Sbjct: 94 SRFKAKAQEARNDSKWYGKERPRWFGPIPY----DYPPYLTGELPGDYGFDIAGLGKDRL 149
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F K WAML A G +IPE + GA E VW++ G L G TL+Y G
Sbjct: 150 TFDKYFNFEILHARWAMLAALGALIPEVLDLTGAFHFAEPVWWRVGYSKLQGETLDYLG- 208
Query: 169 NIP-------INLVFAVIAEIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPL 212
IP ++ I +++L+ G EY R LE D +PGG FDPL
Sbjct: 209 -IPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPL 267
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
L++DP F LKVKEIKNGRLAM A LGF+ QA TG+GPV+NL H+SDP NNLL +
Sbjct: 268 NLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLLAM 327
Query: 273 IS 274
+
Sbjct: 328 LQ 329
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 124/221 (56%), Gaps = 29/221 (13%)
Query: 75 WYGPDRRIFLPEGLLDRS-EIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYG DR P L S E P YLTGE+PGDYG+D GL + P K W
Sbjct: 105 WYGEDR----PRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARW 160
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI-----PINLVFAV 178
AML + G +IPE + GA E VW++ G L G+TL+Y G +V
Sbjct: 161 AMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIA 220
Query: 179 IAEIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
I + +L+ G EY R LE D +PGG FDPL L+ DP+ F LKVKEI
Sbjct: 221 ICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEI 280
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 270
KNGRLAM A LGF++QA +TG+GPV+NL H+SDPF NNLL
Sbjct: 281 KNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNNLL 321
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 132/240 (55%), Gaps = 39/240 (16%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A+ A S +E +W GP +P E P +LTGE PGDYG+D GL + P
Sbjct: 92 ARQARTASSWYGDERPRWLGP-----VP------YEYPAHLTGEYPGDYGFDIAGLGRDP 140
Query: 118 DDFS----------KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
F+ +WAML A G ++PE + F E VW+K G L G+TL+Y G
Sbjct: 141 VAFANYFNFEILHCRWAMLAALGVVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLG 200
Query: 168 KNIP-------INLVFAVIAEIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDP 211
IP ++ I + +L+ G EY R LE D +PGG FDP
Sbjct: 201 --IPGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDP 258
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
LGL+KDP F LKVKEIKNGRLAM A LGF++QA VTG+GP++NL +HLSDP NN+L+
Sbjct: 259 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILS 318
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 116/187 (62%), Gaps = 16/187 (8%)
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPE 147
LTGE PGDYG+D GLS P+ F+K WAMLGA G I PE K+ E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 148 AVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDK 202
VWFK GA + L+Y G + + AV+ ++VL+G E +RI G+ +
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNN 120
Query: 203 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 261
L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 121 LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 180
Query: 262 SDPFANN 268
+P ANN
Sbjct: 181 DNPVANN 187
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 122/206 (59%), Gaps = 25/206 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
++KPV+ + WYG DR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 39 RAKPVSSG------SPWYGTDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPE 89
Query: 119 DFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F+K WAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 90 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 148
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFAL 223
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 PNLVHAQSILAIWASQVILMGAVEGYRIGGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 208
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVT 249
LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 121/203 (59%), Gaps = 24/203 (11%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGA 142
+ PE+L GE PGDYG+D GL + P F+ +WAML A G +IPE + FG
Sbjct: 113 DYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVIPELLDLFGI 172
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYRITNGL 197
E VW+K G L G+TL+Y G + I ++ I + +L+ G EY R
Sbjct: 173 VHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQALLMVGPEYARYCGIE 232
Query: 198 DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF+LQA V
Sbjct: 233 ALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNGRLAMVAWLGFYLQAAV 292
Query: 249 TGEGPVENLAKHLSDPFANNLLT 271
TG+GPV+NL +HLSDP NN+L+
Sbjct: 293 TGKGPVQNLVEHLSDPLHNNILS 315
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 121/205 (59%), Gaps = 28/205 (13%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGA 142
E P +LTGE PGDYG+D GL + P F+ +WAML A G ++PE + FG
Sbjct: 40 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGV 99
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 195
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 100 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYARYCG 157
Query: 196 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 158 IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 217
Query: 247 YVTGEGPVENLAKHLSDPFANNLLT 271
VTG+GP++NL +HLSDP NN+L+
Sbjct: 218 AVTGKGPIQNLVEHLSDPLHNNILS 242
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 142/279 (50%), Gaps = 38/279 (13%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDR-R 81
P A+ S+ G S + KKK A S+ + + +KWYG +R R
Sbjct: 59 PFTAVKAIANSSIGVSLRRRLE-----EKKKEAVENSSRFKSKAQEARNDSKWYGKERPR 113
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGF 131
F P + P YLTGE+PGDYG+D GL K F K WAML A G
Sbjct: 114 WFGPIPY----DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGA 169
Query: 132 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVL 184
+IPE F+ G E VW++ G L G TL Y G IP ++ I +++L
Sbjct: 170 LIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLG--IPGLHVAGSQGVIVIAICQVLL 227
Query: 185 VGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 235
+ G EY R LE D +PGG FDPL L++DP F LKVKEIKNGRLA
Sbjct: 228 MVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLA 287
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
M A LGF+ QA TG+GPV+NL H+SDP NNL+ ++
Sbjct: 288 MVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQ 326
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 122/205 (59%), Gaps = 28/205 (13%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGA 142
+ PE+L GE PGDYG+D GL + P F+ +WAMLGA G ++PE + FG
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 195
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 61 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGLRIAGGQGIIVIAICQALLMVGPEYARYCG 118
Query: 196 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 119 IEALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYVQA 178
Query: 247 YVTGEGPVENLAKHLSDPFANNLLT 271
VTG+GPV+NL +HLSDP NN+L+
Sbjct: 179 AVTGKGPVQNLIEHLSDPLHNNILS 203
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 120/209 (57%), Gaps = 39/209 (18%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L E P YLTGE PGDYG++ GLS P+ F S+WA
Sbjct: 33 WYGPDRVKYLGPFF---GEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRELEVIHSRWA 89
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
M F++ WFK + + L+Y G + + A+ A +
Sbjct: 90 M-----------FDR----------WFKARSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 128
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ F LKVKEIKNGRLAMF+M
Sbjct: 129 VILMGAVEGYRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFVELKVKEIKNGRLAMFSM 188
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 189 FGFFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 123/226 (54%), Gaps = 28/226 (12%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
A P + WYG DR +L G E P YLTGE PGDYG+D GLS P+ F
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 121 -------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 173
S+WAMLGA G + PE + G G EAVW + L + G
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWVQGWFTDLQRRRI---GPTWATP 150
Query: 174 LVFAVIAEIVLVGGAEY-----YRIT----NGL--DLEDKLHPGGPFDPLGLAKDPDQFA 222
+ +G + Y R T NG + ED L+PGG FDPLGLA DP+ FA
Sbjct: 151 SLVHAQEHFSHLGYSSYPHGSLLRATRVPGNGPLGEAEDLLYPGGSFDPLGLATDPEAFA 210
Query: 223 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 256
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 110/172 (63%), Gaps = 16/172 (9%)
Query: 112 GLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 161
GLS P+ F+K WAMLGA G + PE + G G EAVWFK GA +
Sbjct: 4 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEG 62
Query: 162 TLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAK 216
L+Y G + + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA
Sbjct: 63 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLAD 122
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 123 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 123/212 (58%), Gaps = 28/212 (13%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFG 141
+E P +LTGE PGD G+DPFGL+K P DF+K WAMLG G ++PE F G
Sbjct: 158 AEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLG 217
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLD 198
P W+ A + + + L+Y G + N+ F ++ ++L+G E +R L
Sbjct: 218 IAQLP--AWYDA-ATVANTSNLDYLGNPNLVHASNVSFIALSTLLLMGPVEAWRWNGALA 274
Query: 199 LEDK-----LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253
E K +PGGPFDPL L P+ LK+KEIKNGRLAM M GF+ Q+YVTGEGP
Sbjct: 275 SEAKSAERTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMVGMFGFWAQSYVTGEGP 330
Query: 254 VENLAKHLSDPFANNLLTVI---SGNAERAPT 282
+ NLA HL+DP NNLL + + + E+ PT
Sbjct: 331 LANLAAHLADPAHNNLLNTVAMFAASGEKRPT 362
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 118/205 (57%), Gaps = 33/205 (16%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFG 141
+E P +LTGE PGD G+DP GL+K P+DF+K WAMLG G ++PE F G
Sbjct: 367 AEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLG 426
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGK-------NIPINLVFAVIAEIVLVGGAEYYRIT 194
P W++ GA+ G +L+Y G N+P L+F ++L E +R
Sbjct: 427 IAQLP--AWYEAGAVANTG-SLDYLGNPNLVHASNVP--LIF--FTTLLLFLPIEAWRWN 479
Query: 195 NGLDLEDK-----LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
+ E K +PGGPFDPL L P+ LK+KEIKNGRLAM M GF+ Q+YVT
Sbjct: 480 GQIAPEAKSAERTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMVGMFGFWAQSYVT 535
Query: 250 GEGPVENLAKHLSDPFANNLLTVIS 274
GEGP+ NLA HL+DP NNLL ++
Sbjct: 536 GEGPLANLAAHLADPAHNNLLNTVA 560
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 89/164 (54%), Gaps = 26/164 (15%)
Query: 134 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-------NIPINLVFAVIAEIVLVG 186
PE F G P W++ GA+ G +L+Y G N+P L+F ++L
Sbjct: 1 PEVFGNLGIAQLP--AWYEAGAVANTG-SLDYLGNPNLVHASNVP--LIF--FTTLLLFL 53
Query: 187 GAEYYRITNGL-----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
E +R + E +PGGPFDPL L P+ LK+KEIKNGRLAM M G
Sbjct: 54 PIEAWRWNGQIAPDAKSKEWTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMVGMFG 109
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI---SGNAERAPT 282
F+ Q+YVTGEGP+ NLA HL+DP NNLL + + + E+ PT
Sbjct: 110 FWAQSYVTGEGPLANLAAHLADPAHNNLLNTVAMFAASGEKRPT 153
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 115/188 (61%), Gaps = 20/188 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI----NLVFAVI 179
AMLGA G + P+ +K G EA+WFK GA + L+Y G N+ + N+V +
Sbjct: 94 AMLGALGCVTPKLLSKNGVQF-SEALWFKAGAQIFQEGGLDYLG-NLSLVHAQNIVATLA 151
Query: 180 AEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF
Sbjct: 152 CQVILMGLVEGYRVNGGPAGEGLDPLYPGKSFDPLGLADDPDTFAELKVKEIKNGRLAMF 211
Query: 238 AMLGFFLQ 245
+M GFF+Q
Sbjct: 212 SMFGFFVQ 219
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 105/153 (68%), Gaps = 6/153 (3%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAV 178
S+WAMLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+
Sbjct: 16 SRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI 74
Query: 179 IA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLA
Sbjct: 75 WACQVVLMGAVEGYRIAGGPLGEITDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLA 134
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
MF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 135 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 167
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 110/175 (62%), Gaps = 16/175 (9%)
Query: 109 DPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
D GLS P+ F+K WAMLGA G + PE + G G EAVWFK G+ +
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIF 59
Query: 159 DGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLG 213
L+Y G I + A+ A +++L+G E YRI G ++ D L+PGG FDPLG
Sbjct: 60 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 119
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
LA DPD FA LKVKEIKNG LAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 LADDPDAFAELKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 139/274 (50%), Gaps = 36/274 (13%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRI 82
P + A+ S+ G + L +KK A A A S V +E + WY R
Sbjct: 79 PFTLVKAIANSSIG----EQLQQRMLKTKKAAQEAAGEAREAQSNVRDE-SMWYREGRPK 133
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFI 132
+L D P++L GE PGDYG+D GLS+ P F ++WAML A G +
Sbjct: 134 WLGPIPYD---YPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVV 190
Query: 133 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLV 185
IPE ++FG E VW+K G L G+TL+Y G IP ++ +++L+
Sbjct: 191 IPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLG--IPGLHIAGAQGILVIAFCQVILM 248
Query: 186 GGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 236
G EY R LE D +PGG FDPLGL KD F LKVKE+KNGRLAM
Sbjct: 249 LGPEYARYCGIEALEPLGIFLPGDVNYPGGALFDPLGLTKDAAAFEDLKVKEMKNGRLAM 308
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 270
A LGF++QA VT +GP++NL L DP NL
Sbjct: 309 VAWLGFYVQALVTQKGPIDNLFDFLEDPLHQNLF 342
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 106/176 (60%), Gaps = 21/176 (11%)
Query: 112 GLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 161
GLS P F++ WAMLGA G I PE K G G EAVWFK GA +
Sbjct: 2 GLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFQDG 60
Query: 162 TLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL------DLEDKLHPGGPFDPL 212
LNY G + + A +A +++L+G AE YR G DL D L+PGG FDPL
Sbjct: 61 GLNYLGNESLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDL-DSLYPGGAFDPL 119
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GLA DPD A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 120 GLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPTGNN 175
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 123/213 (57%), Gaps = 18/213 (8%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 122
+V+P + +YGP+R ++ +G ++PEYL GE PGDYG D F L + P++++K
Sbjct: 2 SVAPSQDTRTAYYGPNRPLW--KGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAK 59
Query: 123 ----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 172
WAMLG G ++PE N G E VWFKTGA + ++Y G I
Sbjct: 60 LRSQELMNGRWAMLGITGCLVPELINS-NPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFI 118
Query: 173 N---LVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKE 228
N LV ++ + +L+G AEY RI + D +PGG FDPLG + DP+ FA LKVKE
Sbjct: 119 NAHSLVAVIVVQALLMGVAEYARIKLSPEGNDAFYPGGKAFDPLGFSSDPESFAELKVKE 178
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 261
IKNGRLAM AM G F Q VTG P++NL L
Sbjct: 179 IKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDFL 211
>gi|330318814|gb|AEC11067.1| chlorophyll a/b binding protein [Camellia sinensis]
Length = 107
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/100 (75%), Positives = 82/100 (82%)
Query: 184 LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
VGGAEY NGL+LEDKLHP GPFDPLGLAKDPDQ A+LKVKEIKNGRL MF +LGFF
Sbjct: 8 FVGGAEYSSFLNGLNLEDKLHPSGPFDPLGLAKDPDQGAILKVKEIKNGRLTMFPILGFF 67
Query: 244 LQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283
+QA VTGEGPVE LAKH+ DPFAN LT ++G ERA TL
Sbjct: 68 IQASVTGEGPVEKLAKHVRDPFANKDLTKLAGFEERASTL 107
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/186 (48%), Positives = 111/186 (59%), Gaps = 20/186 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
WYGPDR +L G L E P YLTGE GDYG+D GLS P+ F ++WA
Sbjct: 42 WYGPDRPKYL--GWLS-GETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWA 98
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 181
MLGA G I PE G E VWFK GA + LNY G ++ ++ ++ +
Sbjct: 99 MLGALGCITPELLANNGTPIA-EPVWFKAGAQIFQDGGLNYLGNENLVHAQSIIVTLLVQ 157
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++L+G E YR+ G E DKL+PGG F DPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 158 VILMGTVEGYRVNGGPAGEGLDKLYPGGDFFDPLGLADDPDTFAELKVKEIKNGRLAMFS 217
Query: 239 MLGFFL 244
M GFF+
Sbjct: 218 MFGFFV 223
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 116/207 (56%), Gaps = 42/207 (20%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 182 IVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
++L+G E YR+ G PLG +VKE+KNGRLAMF+M G
Sbjct: 178 VILMGAIEGYRVAGG--------------PLG-----------EVKELKNGRLAMFSMFG 212
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANN 268
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 FFVQAIVTGKGPLENLADHLADPVNNN 239
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 102/153 (66%), Gaps = 6/153 (3%)
Query: 121 SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAV 178
S+WAMLGA G PE K G G EAVWFK GA + L+Y G I + A+
Sbjct: 4 SRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI 62
Query: 179 IA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
A ++VL+G E YRI G E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLA
Sbjct: 63 WATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLA 122
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
MF+M GFF+QA VTG+GPV+NL HL+DP ANN
Sbjct: 123 MFSMFGFFVQAIVTGKGPVQNLYDHLADPVANN 155
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 106/169 (62%), Gaps = 16/169 (9%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGA 142
E P YLTGE PGDYG+D GLS P+ F+K WAMLGA G + PE + G
Sbjct: 8 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 67
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 197
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 68 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLG 126
Query: 198 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 127 EVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 175
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 112/181 (61%), Gaps = 18/181 (9%)
Query: 105 DYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 154
DYG+D GLS P+ F+K WAMLGA G I PE K+ E VWFK G
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 155 ALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP 208
A + L+Y G + + AV+ ++V++G E +RI NGLD + L+PGG
Sbjct: 61 AQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRI-NGLDGVGEGNDLYPGGQ 119
Query: 209 -FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 267
FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P AN
Sbjct: 120 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVAN 179
Query: 268 N 268
N
Sbjct: 180 N 180
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 138/261 (52%), Gaps = 34/261 (13%)
Query: 31 RTSAPGASNP--STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL 88
+ + P NP ST A F+ K A AKSK S + K+ GP
Sbjct: 19 KIAKPSKLNPISSTLIVTAGFTMLKHA--AKSK--VSSSTCDRRVKYLGPFS-------- 66
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFN 138
E P YLTGE PGDYG+D GLS P+ F S+ AM A G I PE +
Sbjct: 67 ---GEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLS 123
Query: 139 KFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAV-IAEIVLVGGAEYYRITN 195
G G EAVWFK GA + L+Y G + + A+ +++L+G E YRI
Sbjct: 124 VMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIAR 182
Query: 196 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253
G ++ D L+PG FD LGLA+D + FA LKVKE+KNGRLAMF+M GFF+QA V+ +
Sbjct: 183 GPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDR 241
Query: 254 VENLAKHLSDPFANNLLTVIS 274
+ENLA HL NN L+ ++
Sbjct: 242 LENLADHLGWTVNNNALSNVT 262
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 108/181 (59%), Gaps = 17/181 (9%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKW---------- 123
+WYGP+R +L G +P YLTGE PGDYG+D GLS P+ F K+
Sbjct: 30 EWYGPNRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARF 87
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 180
AMLGA G + PE K+G E+VWF+ GA + L+Y G I+ + VI+
Sbjct: 88 AMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAIVIS 147
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+
Sbjct: 148 QVVLMGLVEGYRVNGGPAGEGLDSLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFS 207
Query: 239 M 239
M
Sbjct: 208 M 208
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 128/251 (50%), Gaps = 44/251 (17%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 7 AATASSSTGLRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 63
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKF 140
++ P YLTGE PGDYG+D GLS P+ F++ WAMLGA G I PE K+
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 141 GANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGL 197
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI NGL
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI-NGL 182
Query: 198 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
PG LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 -------PG-----------------LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 218
Query: 258 AKHLSDPFANN 268
HL +P ANN
Sbjct: 219 LDHLDNPVANN 229
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 137/249 (55%), Gaps = 33/249 (13%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
KK A SK A++ + + WYG +R +L D P YLTGE+PGDYG+D
Sbjct: 84 KKVAVKESSKFQALTAKARKESLWYGEERPRWLGPIPYD---YPAYLTGELPGDYGFDVA 140
Query: 112 GLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 161
GLSK F ++WAML A G + PE + GA E VW++ G L G+
Sbjct: 141 GLSKDSVAFQRYFNFEILHARWAMLAALGALAPEVLDLSGAFHFIEPVWWRVGYSKLKGD 200
Query: 162 TLNYFGKNIPINLVFA--------VIAEIVLVGGAEYYRITNGLDLE--------DKLHP 205
TL+Y G IP L FA I + +L+ G EY R LE D +P
Sbjct: 201 TLDYLG--IP-GLHFAGSQGVLVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYP 257
Query: 206 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
GGP FDPL L+ D LKVKEIKNGRLAM A LGF+ QA +TG+GPV+NL +H+SDP
Sbjct: 258 GGPLFDPLNLSSDAVALEELKVKEIKNGRLAMVAWLGFYAQAALTGKGPVQNLVEHISDP 317
Query: 265 FANNLLTVI 273
F NNLL V+
Sbjct: 318 FHNNLLCVL 326
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 115/277 (41%), Positives = 146/277 (52%), Gaps = 36/277 (12%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRI 82
P A+ S G S S + KKAA SK A++ + + WYG +R
Sbjct: 62 PFTAVKAIANSPLGESLQSRME-----ENKKAAVKNSSKFKALAEKAKNESLWYGEERPR 116
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFI 132
+L D P YLTGE+PGDYG+D GL K P F K WAML A G +
Sbjct: 117 WLGPIPYD---YPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGAL 173
Query: 133 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLV 185
+PE + GA E VW++ G L G+TL+Y G IP ++ I + +L+
Sbjct: 174 LPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLG--IPGFHFAGSQGVIVIAICQALLM 231
Query: 186 GGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 236
G EY R LE D +PGG FDPL L+KDP F LKVKEIKNGRLAM
Sbjct: 232 VGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 291
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
A LGF++QA TG+GPV+NL HL+DPF NNLL++
Sbjct: 292 VAWLGFYIQAAATGKGPVQNLLDHLADPFHNNLLSIF 328
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 128/251 (50%), Gaps = 44/251 (17%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 2 AATASSSTGLRPTQFVGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 58
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKF 140
++ P YLTGE PGDYG+D GLS P+ F++ WAMLGA G I PE K+
Sbjct: 59 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 118
Query: 141 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL 197
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI NGL
Sbjct: 119 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI-NGL 177
Query: 198 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
PG LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 178 -------PG-----------------LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 213
Query: 258 AKHLSDPFANN 268
HL +P ANN
Sbjct: 214 LDHLDNPVANN 224
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 123/226 (54%), Gaps = 37/226 (16%)
Query: 73 AKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
+KWYGP R R+ P G E+L G + GD G+DP GLSK+ F+K
Sbjct: 175 SKWYGPSRPRLPGPLG------SAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHA 228
Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFG-------KNIPIN 173
WAMLG G ++PE G + G E VW+K GA L+ + TLN+ G I
Sbjct: 229 RWAMLGVVGCLVPELLALRGVDLG-EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIG 287
Query: 174 LVFAVIAEIVLVGGAEYYRITNGLDLE--------DKLHPGG-PFDPLGLAKDPDQFALL 224
L+ A A VL+GG EY R LE D+ +PGG PFDPL A D D F
Sbjct: 288 LIAACQA--VLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVEQ 345
Query: 225 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 270
VKE+KNGRLAM AMLGFF+QA VT GPV+N+ ++DP NN+
Sbjct: 346 AVKEVKNGRLAMLAMLGFFVQAAVTRVGPVQNVLDFVADPAHNNIF 391
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 106/183 (57%), Gaps = 19/183 (10%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--- 122
+P + L++WYGPDR +L G L ++P YLTGE+PGDYG+D GL P ++
Sbjct: 143 APAADNLSQWYGPDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADPVTLARYRE 199
Query: 123 -------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 173
WAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 200 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 259
Query: 174 -LVFAVIAEIVLVGGAEYYRITNGL---DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 229
+V ++ + ++G E YR G D D+L+PGGPFDPLGLA DPD FA LKVKE+
Sbjct: 260 SVVLTFLSTLAIMGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEV 319
Query: 230 KNG 232
KNG
Sbjct: 320 KNG 322
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 131/252 (51%), Gaps = 25/252 (9%)
Query: 37 ASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFL-PEGLLDRS 92
++ S F P + K++ P + N WYGPDR +L P +
Sbjct: 6 TNSSSVFCPTTFLGQTKSSSFNPLRDVVSLGSHKYNMGNYLWYGPDRVKYLGPFSV---- 61
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDD-----------FSKWAMLGAAGFIIPEAFNKFG 141
+ P Y TGE PGDYG+D GLS P+ + +WAMLGA G I PE K+
Sbjct: 62 QTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRWAMLGAFGCITPEVLQKWV 121
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRIT--NG 196
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI +G
Sbjct: 122 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINRFDG 181
Query: 197 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 255
+ + L+PGG FD L L D F LKVKEIKNG LAMF+M GFF+QA VTG+ P+E
Sbjct: 182 VGEGNDLYPGGKYFDLLSLVDDQVTFVELKVKEIKNGMLAMFSMFGFFVQAIVTGKDPLE 241
Query: 256 NLAKHLSDPFAN 267
+L HL + AN
Sbjct: 242 SLLDHLDNFVAN 253
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 107/167 (64%), Gaps = 16/167 (9%)
Query: 107 GYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+D GLS P+ F S+WAMLGA G + PE +K G G EAVWFK G+
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQ 59
Query: 157 LLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDP 211
+ L+Y G I + A+ A ++VL+G E YR+ G E DK++PGG FDP
Sbjct: 60 IFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKVYPGGSFDP 119
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 258
LGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+
Sbjct: 120 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLS 166
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 129/247 (52%), Gaps = 29/247 (11%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S+ K A + K +A + + + WYG +R +L G L + P YL G PGDY YD
Sbjct: 46 SEYKRAEQQREKELAAA---RDESPWYGEERPKWL--GPLS-YDYPAYLRGGAPGDYAYD 99
Query: 110 PFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 159
P L++ D F ++WAMLGA G IPE G + EA W+ G L
Sbjct: 100 PLQLAQDQDKFDQYFEFELLHARWAMLGALGAGIPEILQYSGVSDFLEARWWAVGGAKLQ 159
Query: 160 GNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYRITNGLDLE--------DKLHPG 206
G LNY G + I + I +++L+ G EY R LE DK +PG
Sbjct: 160 GEDLNYLGVSGLRIAGGQGIAIIAICQVLLMFGPEYARACGIEALEPLGLYLPGDKNYPG 219
Query: 207 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 266
G FDPLGL+KDP FA L+VKEIKNGRLA+ A +GF QA VT +GP+ +L +DP
Sbjct: 220 GLFDPLGLSKDPASFADLQVKEIKNGRLALVAWVGFAAQAAVTRKGPIADLLDFAADPVH 279
Query: 267 NNLLTVI 273
NN+ +
Sbjct: 280 NNIFAYL 286
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 181
MLGA G + PE + G G EAVWFK G+ + L+Y G ++ ++ +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILVIWATQ 59
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLSDPVNNN 148
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 59
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 59
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 124/214 (57%), Gaps = 18/214 (8%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDR-SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 122
+V+P + A +YGP+R ++ +G + ++PEYL GE PGDYG D F L++ P ++++
Sbjct: 14 SVAPDQDARAPYYGPNRPLW--KGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYAR 71
Query: 123 ----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 172
WAMLG G + PE N + G E VWF TGA + ++Y G I
Sbjct: 72 LRTQELMNGRWAMLGITGCLTPELINS-NSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFI 130
Query: 173 NL--VFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGG-PFDPLGLAKDPDQFALLKVKE 228
N +FAVI + +L+G AEY RI + D +PGG FDPLG + DP+ A LKVKE
Sbjct: 131 NAHSLFAVIVVQALLMGLAEYARIKFVPEGADPFYPGGKTFDPLGFSSDPEILAELKVKE 190
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
IKNGRLAM AM G F Q VTG P++NL L
Sbjct: 191 IKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDWLH 224
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/149 (55%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 59
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 60 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 119
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 120 FGFFVQAIVTGKGPIENLFDHLADPTANN 148
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Query: 123 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA 180
WAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 46 WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 104
Query: 181 -EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 105 VQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 164
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP + L+DP NN
Sbjct: 165 SMFGFFVQAIVTGKGPPREPRRPLADPVNNN 195
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 125/248 (50%), Gaps = 32/248 (12%)
Query: 34 APGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + A P P+ WYGPDR +L
Sbjct: 4 AATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYL------ 57
Query: 91 RSEIPEYLTGEVPGDY-GYDPFGLSKKPD---DFSKWAMLGAAGFIIPEAFNKFGANCGP 146
G + PF ++ +WAMLGA G I PE K+
Sbjct: 58 -------------GPFSAQTPFAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFK 104
Query: 147 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLED 201
E +WFK GA + L+Y G + + AV+ ++VL+G E +RI G+ +
Sbjct: 105 EPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGN 164
Query: 202 KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 260
L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL H
Sbjct: 165 NLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 224
Query: 261 LSDPFANN 268
L +P ANN
Sbjct: 225 LDNPVANN 232
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 136 bits (343), Expect = 8e-30, Method: Composition-based stats.
Identities = 76/146 (52%), Positives = 95/146 (65%), Gaps = 6/146 (4%)
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 184
A G + PE +K G G EAVWFK GA + L+Y G + N+V + +++L
Sbjct: 2614 ALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 2672
Query: 185 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 2673 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 2732
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANN 268
F+QA VTG+GP+ENL HL++P NN
Sbjct: 2733 FVQAIVTGKGPIENLNDHLANPAVNN 2758
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 100/173 (57%), Gaps = 19/173 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 232
+VL+G E YRI G ++ D L+PGG FDPLGLA DP FA LKVKEIKNG
Sbjct: 164 VVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPKAFAELKVKEIKNG 216
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 181
MLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 59
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 119
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 120 FGFFVQAIVTGKGPIENLFDHIADPVANN 148
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 103/177 (58%), Gaps = 15/177 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD----------DFSKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GDYG+D GLS P+ ++WAMLGA G ++PE +
Sbjct: 37 PSYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHARWAMLGALGSLLPELLATYAGTP 96
Query: 145 GPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 199
E VWFK GA + L+Y G + + A++ +++L+G +E YR+ G ++
Sbjct: 97 LLEPVWFKAGAQIFSPGGLDYLGNPSLVHAQSILAILGFQVLLMGLSEGYRLAGGPLGEV 156
Query: 200 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 256
D L+PG FDPLG ++DP+ L+ KEIKNGRLAM AMLG + QA VTG+GPV N
Sbjct: 157 GDALYPGASFDPLGFSEDPESLLELQTKEIKNGRLAMLAMLGMYTQALVTGKGPVSN 213
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 114/214 (53%), Gaps = 40/214 (18%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEA 136
S+ YL G +PGDYG+DP GLS P+ S ++AMLGAAG I PE
Sbjct: 66 SQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEI 125
Query: 137 FNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 195
F K G AV WFKTG G T NY+ P L F E+ L+G AE+ R +
Sbjct: 126 FGKIGIIPQQTAVVWFKTGVFPPAG-TYNYWAD--PYTLFFL---EMALMGFAEHRRAQD 179
Query: 196 G-----------LDLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
L E L +PGG F+P G KD LK+KE+KNGRLAM
Sbjct: 180 YYKPGSMGKQYFLGFEKYLGGSGDPAYPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAML 239
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
A+LG+F+QA TG GP +NL HL+DPFANN+LT
Sbjct: 240 AILGYFIQAPFTGVGPFQNLLDHLADPFANNILT 273
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 114/214 (53%), Gaps = 40/214 (18%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEA 136
S+ YL G +PGDYG+DP GLS P+ S ++AMLGAAG I PE
Sbjct: 66 SQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEI 125
Query: 137 FNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 195
F K G AV WFKTG G T NY+ P L F E+ L+G AE+ R +
Sbjct: 126 FGKIGIIPQETAVVWFKTGVFPPAG-TYNYWAD--PYTLFFL---EMALMGFAEHRRAQD 179
Query: 196 G-----------LDLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
L E L +PGG F+P G KD LK+KE+KNGRLAM
Sbjct: 180 FYKPGSMGKQYFLGFEKYLGGSGDPAYPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAML 239
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
A+LG+F+QA TG GP +NL HL+DPFANN+LT
Sbjct: 240 AILGYFIQAPFTGVGPFQNLLDHLADPFANNILT 273
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 142/290 (48%), Gaps = 64/290 (22%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AVR S S PS+ S +K + A S PV + N +L W+ + +
Sbjct: 16 AEAVRQSFGARSLPSSIG-----SSRKGSFVVKAASSPPVKQNGANRQL--WFASKQSL- 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGA 128
YL G +PGD+G+DP GLS +P + ++AMLGA
Sbjct: 68 ------------SYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGA 115
Query: 129 AGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AG I PE K G A+ WF+TG + G T NY+ N + + E+ +G
Sbjct: 116 AGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGF 169
Query: 188 AEYYRITNG-----------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKE 228
AE+ R + L LE L +PGGP F+PLG KD LK+KE
Sbjct: 170 AEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKE 229
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAE 278
+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT + GN E
Sbjct: 230 VKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLKGNKE 279
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 139/282 (49%), Gaps = 60/282 (21%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ AVR S S PS+ S+K + + PV N +L W+ + +
Sbjct: 298 AEAVRQSFGARSLPSSIGS----SRKGSFVVKAAAPVKKGGANRQL--WFASKQSL---- 347
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGF 131
YL G +PGD+G+DP GLS +P+ + ++AMLGAAG
Sbjct: 348 ---------SYLDGSLPGDFGFDPLGLSDPEGVGGFIEPEWLAYGEIINGRFAMLGAAGA 398
Query: 132 IIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY 190
I PE K G A+ WF+TG + G T NY+ N + + E+ +G AE+
Sbjct: 399 IAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAEH 452
Query: 191 YRITNG-----------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKN 231
R+ + L LE L +PGGP F+PLG KD LK+KE+KN
Sbjct: 453 RRLQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKN 512
Query: 232 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
GRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 513 GRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 554
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 117/212 (55%), Gaps = 31/212 (14%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL-SKKPDDFSK----------WA 124
YGP RR FLP+G PE+L G + GD G+DP GL S P D + WA
Sbjct: 176 YGPTRRKFLPDGF--GYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWA 233
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN--TLNYFGK---NIPINLVFAVI 179
MLG G +PEA +FG E VW+K GA L+ L+Y G +I + AVI
Sbjct: 234 MLGVVGAAVPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVI 293
Query: 180 A--EIVLVGGAEYYRITNGLDL---------EDKLHPGG-PFDPLGLAKDPDQFALLKVK 227
A ++VL+GG EY R G+D D+ +PGG PFDP G++ D F KV
Sbjct: 294 AACQLVLMGGPEYARKV-GIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVA 352
Query: 228 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 259
E+K+GRLAM AMLG F QA+ TG GPVENL +
Sbjct: 353 EMKHGRLAMVAMLGCFAQAWATGVGPVENLTE 384
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 130 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVG 186
G + PE + G G EAVWFK GA + L+Y G + + A+ A +++L+G
Sbjct: 2 GCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMG 60
Query: 187 GAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+
Sbjct: 61 AVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMLSMFGFFV 120
Query: 245 QAYVTGEGPVENLAKHLSDPFANN 268
QA VTG+GP+ENLA HL+DP NN
Sbjct: 121 QAIVTGKGPLENLADHLADPVNNN 144
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 106/191 (55%), Gaps = 20/191 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP GL++ P++F++ WAML G +IPEA N
Sbjct: 55 PAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEALGL--GNW 112
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKL 203
W T G Y G +P + ++A E + V E R D E +
Sbjct: 113 VSAQQWAAT-----PGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEEP-DHEKRK 166
Query: 204 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLS 262
+PGGPFDPLG AKDP + K+KE+KNGRLA+ A LGF +QA G GP+ENLA HLS
Sbjct: 167 YPGGPFDPLGFAKDPKKLEEYKLKELKNGRLALLAFLGFSVQAIAYPGTGPLENLASHLS 226
Query: 263 DPFANNLLTVI 273
+P+ANN+ +I
Sbjct: 227 NPWANNIANII 237
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 89/127 (70%), Gaps = 5/127 (3%)
Query: 147 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLED 201
EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G ++ D
Sbjct: 6 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVD 65
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 261
L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL
Sbjct: 66 PLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 125
Query: 262 SDPFANN 268
+DP NN
Sbjct: 126 ADPVNNN 132
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 94/141 (66%), Gaps = 6/141 (4%)
Query: 133 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAE 189
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 4 FPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 62
Query: 190 YYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 247
YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA
Sbjct: 63 GYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 122
Query: 248 VTGEGPVENLAKHLSDPFANN 268
VTG+GP+ENLA HL+DP NN
Sbjct: 123 VTGKGPLENLADHLADPVNNN 143
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 106/204 (51%), Gaps = 61/204 (29%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 19 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 75
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 184
MLGA G + PE ++ G G EAVWFK ++A +++L
Sbjct: 76 MLGALGCVFPELLSRNGVKFG-EAVWFKAA--------------------IWA--CQVIL 112
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
+G E YRI G PLG +VKEIKNGRLAMF+M GFF+
Sbjct: 113 MGAVEGYRIGGG--------------PLG-----------EVKEIKNGRLAMFSMFGFFV 147
Query: 245 QAYVTGEGPVENLAKHLSDPFANN 268
QA VTG+GP+ENLA HL+DP NN
Sbjct: 148 QAIVTGKGPLENLADHLADPVNNN 171
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 122/230 (53%), Gaps = 37/230 (16%)
Query: 73 AKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK--------- 122
+KWYG R R+ P G ++L GE GD G+DP L K P F++
Sbjct: 53 SKWYGASRPRLPGPLG------GAQHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHA 106
Query: 123 -WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFG-------KNIPIN 173
WAMLG G ++PE G G E VW+K GA L+ + TLN+ G I
Sbjct: 107 RWAMLGFVGCMVPELLALRGVELG-EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIG 165
Query: 174 LVFAVIAEIVLVGGAEYYRITNGLDLE--------DKLHPGG-PFDPLGLAKDPDQFALL 224
L+ A A VL+GG EY R LE D+ +PGG PFDPL A D D F
Sbjct: 166 LIAACQA--VLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQ 223
Query: 225 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
V+EIKNGRLAM AMLG F+QA VT +GPV+N+ + +SDP N+ T ++
Sbjct: 224 AVREIKNGRLAMVAMLGLFVQAAVTKKGPVQNVMEFVSDPAGENIFTNVA 273
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 92/135 (68%), Gaps = 10/135 (7%)
Query: 139 KFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITN 195
KFG EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI
Sbjct: 12 KFG-----EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 66
Query: 196 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253
G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 67 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 126
Query: 254 VENLAKHLSDPFANN 268
+ENLA HL+DP NN
Sbjct: 127 LENLADHLADPVNNN 141
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 106/192 (55%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G +P +L ++ E V + AE+ R T D E K
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEHQR-TMEKDPEKK 166
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHL 226
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ +I
Sbjct: 227 ADPWHNNIGDII 238
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 115/212 (54%), Gaps = 30/212 (14%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAM 125
YG R FL + E P +L G + GD G+DP GL K DD ++WAM
Sbjct: 158 YGARRVKFLGDA---EYEYPAHLDGSLCGDAGFDPLGLGK--DDLPRMRELELLHARWAM 212
Query: 126 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFGK---NIPINLVFAVIA- 180
LG G +PE ++G E VW+K GA ++ + +L+YFG +I A+IA
Sbjct: 213 LGIVGVAVPELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAA 272
Query: 181 -EIVLVGGAEYYRITNGLDLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIK 230
++VL+GG EY R LE DK +PGG PFDP ++ D D+F KV EIK
Sbjct: 273 CQVVLMGGPEYARYVGIDSLEPVGVYLPGDKDYPGGAPFDPFKISDDADEFEKQKVMEIK 332
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
+GRLAM AMLG QA+VT GP+ENLA S
Sbjct: 333 HGRLAMIAMLGVAAQAFVTRAGPIENLASVFS 364
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G +P L ++ E V + AE+ R T D E K
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKK 166
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 226
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ +I
Sbjct: 227 ADPWHNNIGDII 238
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G +P L ++ E V + AE+ R T D E K
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKK 166
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 226
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ +I
Sbjct: 227 ADPWHNNIGDII 238
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/193 (45%), Positives = 105/193 (54%), Gaps = 28/193 (14%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFG 141
S P +LTG + GD G+DP L K P+ ++ WAML G +PEA + G
Sbjct: 185 SSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVPEALSIAG 244
Query: 142 A----NCGPEAVWFKTGALLLDGNTLNYFGKN---IPINLVFAVIA--EIVLVGGAEYYR 192
A E VW+K GA L+G +LNY G I AVIA + VL+GG EY R
Sbjct: 245 ALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLMGGPEYAR 304
Query: 193 ITNGLDLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
LE D +PGG PFDP GL+ D D+FA KV EI++GRLAM AMLG F
Sbjct: 305 YVGIRSLEPVGVYLPGDANYPGGAPFDPFGLSDDADRFARQKVIEIEHGRLAMVAMLGCF 364
Query: 244 LQAYVTGEGPVEN 256
QA VTGEGPV N
Sbjct: 365 AQAIVTGEGPVAN 377
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 106
Query: 145 GPEAVWFKTGALLLD-GNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W + + G Y G +P L ++ E V + AE+ R T D E K
Sbjct: 107 ---GNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKK 162
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 163 KYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 222
Query: 262 SDPFANNLLTVI 273
SDP+ NN+ +I
Sbjct: 223 SDPWHNNIGDII 234
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 107/206 (51%), Gaps = 22/206 (10%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAG 130
R+ + L P YL G PGD+G+DP GL + PD+ +WAML G
Sbjct: 44 RVSMSAEWLPGQPRPAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPG 103
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAE 189
+IPEA N W T G Y G +P + +IA E V + E
Sbjct: 104 CLIPEALGL--GNWVEAQQWAAT-----PGGQATYLGTPVPWGTLPVIIAIEFVAIAFVE 156
Query: 190 YYRITNGL-DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
RI G+ E + +PGG FDPLG +KDP +F K+KE+KNGRLA+ A LGF QA
Sbjct: 157 SRRI--GVPSAEKRKYPGGAFDPLGFSKDPKKFEEFKLKEVKNGRLALLAFLGFCAQAAA 214
Query: 249 T-GEGPVENLAKHLSDPFANNLLTVI 273
G GP++NLA HL+DP+ NN+ +I
Sbjct: 215 YPGTGPLQNLATHLADPWHNNIANII 240
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 104/192 (54%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP GL + P + +WAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL----- 110
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G+ +P + ++A E + + E+ R D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKK 166
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ VI
Sbjct: 227 ADPWHNNIGDVI 238
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 96/157 (61%), Gaps = 16/157 (10%)
Query: 100 GEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAV 149
GE PGDYG+D GLS P+ F S+WAMLGA G + PE +K G G EAV
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAV 59
Query: 150 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLH 204
WFK GA + L+Y G I + A+ A ++VL+G E YRI G E D L+
Sbjct: 60 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLY 119
Query: 205 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
PGG FDPLGLA PDQFA LKVKE+KNGRLAMF+M G
Sbjct: 120 PGGAFDPLGLADGPDQFAELKVKELKNGRLAMFSMFG 156
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 138/265 (52%), Gaps = 54/265 (20%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R +++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AAAPPVKQ------GANRPLWVAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEA 148
GDYG+DP GLS +P + ++AMLGAAG I PE K G A
Sbjct: 72 GDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETA 131
Query: 149 V-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----------- 196
+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 132 LPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSMGKQYF 185
Query: 197 LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q V
Sbjct: 186 LGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLV 245
Query: 249 TGEGPVENLAKHLSDPFANNLLTVI 273
TG GP +NL HL+DP NN+LT +
Sbjct: 246 TGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 96/155 (61%), Gaps = 16/155 (10%)
Query: 105 DYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 154
DYG+D GLS P+ F+K WAMLGA G I PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGVKFG-EAVWFKAG 59
Query: 155 ALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPF 209
+ + L+Y G I+ + A+ A +++L+G E YRI G ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPTLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSF 119
Query: 210 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
DPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 137/265 (51%), Gaps = 54/265 (20%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEA 148
GDYG+DP GLS +P + ++AMLGAAG I PE K G A
Sbjct: 72 GDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETA 131
Query: 149 V-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----------- 196
+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 132 LPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSMGKQYF 185
Query: 197 LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q V
Sbjct: 186 LGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLV 245
Query: 249 TGEGPVENLAKHLSDPFANNLLTVI 273
TG GP +NL HL+DP NN+LT +
Sbjct: 246 TGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 107/193 (55%), Gaps = 24/193 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 109
Query: 145 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 201
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 110 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 164
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 260
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA H
Sbjct: 165 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 224
Query: 261 LSDPFANNLLTVI 273
L+DP+ NN+ ++
Sbjct: 225 LADPWHNNIGDIV 237
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 139/282 (49%), Gaps = 60/282 (21%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ AVR S S PS+ S+K + + PV N +L W+ + +
Sbjct: 314 AEAVRQSFGARSLPSSIGS----SRKGSFVVKAAAPVKKGGANRQL--WFASKQSL---- 363
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGF 131
YL G +PGD+G+DP GLS +P+ + ++AMLGAAG
Sbjct: 364 ---------SYLDGSLPGDFGFDPLGLSDPEGVGGFIEPEWLAYGEIINGRFAMLGAAGA 414
Query: 132 IIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY 190
I PE K G A+ WF+TG + G T NY+ N + + E+ +G AE+
Sbjct: 415 IAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAEH 468
Query: 191 YRITNG-----------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKN 231
R+ + L LE L +PGGP F+PLG KD LK+KE+KN
Sbjct: 469 RRLQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKN 528
Query: 232 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
GRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 529 GRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 570
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 140/286 (48%), Gaps = 64/286 (22%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AVR S S PS+ S +K + A S PV + N +L W+ + +
Sbjct: 16 AEAVRQSFGARSLPSSIG-----SSRKGSFVVKAASSPPVKQNGANRQL--WFASKQSL- 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGA 128
YL G +PGD+G+DP GLS +P + ++AMLGA
Sbjct: 68 ------------SYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGA 115
Query: 129 AGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AG I PE K G A+ WF+TG + G T NY+ N + + E+ +G
Sbjct: 116 AGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGF 169
Query: 188 AEYYRITNG-----------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKE 228
AE+ R + L LE L +PGGP F+PLG KD LK+KE
Sbjct: 170 AEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKE 229
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT ++
Sbjct: 230 VKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLN 275
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 105/194 (54%), Gaps = 24/194 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 134
Query: 145 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 201
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 135 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 189
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 260
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA H
Sbjct: 190 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 249
Query: 261 LSDPFANNLLTVIS 274
L+DP+ N T S
Sbjct: 250 LADPWHNTSATSSS 263
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 107/193 (55%), Gaps = 24/193 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 111
Query: 145 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 201
W K A L DG YFG +P NL + E + + AE R T D E
Sbjct: 112 ---GNWVKAQEWAALPDGQA-TYFGVPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 166
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 260
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENL H
Sbjct: 167 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLGAH 226
Query: 261 LSDPFANNLLTVI 273
L+DP+ NN+ ++
Sbjct: 227 LADPWHNNIGDIV 239
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 97/159 (61%), Gaps = 16/159 (10%)
Query: 105 DYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 154
DYG+D GLS P+ F+K WAMLGA G + PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 155 ALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPF 209
+ + L+Y G + + A+ A +++L+G E YR+ G ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSF 119
Query: 210 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
DPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+QA V
Sbjct: 120 DPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIV 158
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 104/192 (54%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP GL + P + +WAML G ++PEA
Sbjct: 56 PPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGL----- 110
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G+ +P + ++A E + + E+ R D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKK 166
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ VI
Sbjct: 227 ADPWHNNIGDVI 238
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 137/266 (51%), Gaps = 56/266 (21%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--TATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEA 148
GDYG+DP GLS +P + ++AMLGAAG I PE K G PE
Sbjct: 72 GDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGL-IPPET 130
Query: 149 V--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---------- 196
WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 131 ALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSMGKQY 184
Query: 197 -LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 247
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q
Sbjct: 185 FLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGL 244
Query: 248 VTGEGPVENLAKHLSDPFANNLLTVI 273
VTG GP +NL HL+DP NN+LT +
Sbjct: 245 VTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 95/155 (61%), Gaps = 16/155 (10%)
Query: 105 DYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 154
DYG+D GLS P+ F+K WAMLGA G + PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 155 ALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPF 209
+ + L+Y G I + A+ A +++L+G E YRI G ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSF 119
Query: 210 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
DPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 61
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G +P L ++ E V + AE+ R T D E K
Sbjct: 62 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKK 117
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 118 KYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 177
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ +I
Sbjct: 178 ADPWHNNIGDII 189
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 104/192 (54%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 106
Query: 145 GPEAVWFKTGALLLD-GNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W + + G Y G +P L ++ E V + AE+ R T D E K
Sbjct: 107 ---GNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKK 162
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F K+KEIKNGRLAM A + F + Q+ G GP+ENLA HL
Sbjct: 163 KYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYPGTGPLENLASHL 222
Query: 262 SDPFANNLLTVI 273
SDP+ NN+ +I
Sbjct: 223 SDPWHNNIGDII 234
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 106/193 (54%), Gaps = 24/193 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+D GL + P + +WAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL----- 110
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G+ +P + ++A E + + E+ R D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKK 166
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ--AYVTGEGPVENLAKH 260
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A++GF +Q AY+ G GP+ENLA H
Sbjct: 167 KYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL-GTGPLENLATH 225
Query: 261 LSDPFANNLLTVI 273
L+DP+ NN+ VI
Sbjct: 226 LADPWHNNIGDVI 238
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 149/309 (48%), Gaps = 77/309 (24%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
A +++SS A++ A+++LG SS+ R V+ + +A PPAK
Sbjct: 4 QALVSSSSITASAEAARQILGGRSFQSSSSRK-------------VSFAVRAEATPPAKQ 50
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK----- 115
G DR+++ + YL G +PGDYG+DP GLS
Sbjct: 51 ----------------GADRQLWFAS-----KQSLSYLDGSLPGDYGFDPLGLSDPEGTG 89
Query: 116 ---KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNTL 163
+P + ++AMLGA G I PE K G PE WFKTG + G T
Sbjct: 90 GFIEPSWLAYGEIINGRYAMLGAVGAIAPEILGKAGL-IPPETALPWFKTGVIPPAG-TY 147
Query: 164 NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHP 205
+Y+ P L + E+ L+G AE+ R + L E + ++P
Sbjct: 148 DYWAD--PYTLF---VFELALMGFAEHRRFQDFQKPGCLSKQYFLGFEKYFEGSGNPIYP 202
Query: 206 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
GGP F+PLG KD LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HLSDP
Sbjct: 203 GGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLSDP 262
Query: 265 FANNLLTVI 273
NN+LT +
Sbjct: 263 VNNNILTSL 271
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 139/285 (48%), Gaps = 64/285 (22%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AVR S S PS+ S +K + A S PV + N +L W+ + +
Sbjct: 16 AEAVRQSFGARSLPSSIG-----SSRKGSFVVKAASSPPVKQNGANRQL--WFASKQSL- 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGA 128
YL G +PGD+G+DP GLS +P + ++AMLGA
Sbjct: 68 ------------SYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGA 115
Query: 129 AGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AG I PE K G A+ WF+TG + G T NY+ N + + E+ +G
Sbjct: 116 AGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGF 169
Query: 188 AEYYRITNG-----------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKE 228
AE+ R + L LE L +PGGP F+PLG KD LK+KE
Sbjct: 170 AEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKE 229
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 230 VKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 144/298 (48%), Gaps = 74/298 (24%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
A + +++LG P+ S+ R+SA + + ++PPAK
Sbjct: 5 ALLSGRQLLGRPVQ-SAVSRSSA---------RKAPFVVRASSSPPAKQ----------- 43
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS-- 121
G DR+++ + YL G +PGDYG+DP GLS +P +
Sbjct: 44 -----GADRQLWFAS-----KQSLSYLDGTLPGDYGFDPLGLSDPEGTGGFIEPKWLAYG 93
Query: 122 -----KWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINL 174
++AMLGA G I PE F K G PE WFKTG + G T NY+ + +
Sbjct: 94 EVINGRYAMLGAVGAIAPEIFGKMGI-IPPETALPWFKTGVIPPAG-TYNYWADSYTL-- 149
Query: 175 VFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLA 215
+ + L+G AE+ R+ + L LE D +PGGP F+PLG
Sbjct: 150 ---FVFNMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFG 206
Query: 216 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
K + LK+KEIKNGRLAM A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 207 KTEKEMNELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 264
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 97/151 (64%), Gaps = 8/151 (5%)
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 181
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 60
Query: 182 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 61 VILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 119
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 120 SMFGFFVQAIVTGKGPLENLLDHLDNPVANN 150
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 103/205 (50%), Gaps = 68/205 (33%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------W 123
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K W
Sbjct: 13 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 68
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 183
AMLGA G + PE +K G FG+ + I ++A ++V
Sbjct: 69 AMLGALGCVFPEILSKNGVK----------------------FGEAVCILAIWA--CQVV 104
Query: 184 LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
L+G E YR+ LKVKEIKNGRLAMF+M GFF
Sbjct: 105 LMGFVEGYRVE-----------------------------LKVKEIKNGRLAMFSMFGFF 135
Query: 244 LQAYVTGEGPVENLAKHLSDPFANN 268
+QA VTG+GP+ENL HL+DP ANN
Sbjct: 136 VQAIVTGKGPIENLVDHLADPVANN 160
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 114
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G +P + ++A E V + AE+ R T D E K
Sbjct: 115 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEHQR-TMEKDPEKK 170
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG ++DP + K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 171 KYPGGAFDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAAHL 230
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ +I
Sbjct: 231 ADPWHNNIGDII 242
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 90/142 (63%), Gaps = 6/142 (4%)
Query: 132 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGA 188
+ PE G + G E VWFK GA + LNY G I N+V + +++L+G
Sbjct: 1 VTPELLAANGVSFG-EPVWFKAGAQIFQDGGLNYLGNPSLIHAQNIVATLAVQVILMGLV 59
Query: 189 EYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+ GFF+QA
Sbjct: 60 EGYRMNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQA 119
Query: 247 YVTGEGPVENLAKHLSDPFANN 268
VTG+GP++NL HL++P NN
Sbjct: 120 IVTGKGPIQNLTDHLANPAENN 141
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 103/188 (54%), Gaps = 22/188 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL P++F +WAML G ++PEA
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGL----- 79
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W K + G YFG +P NL + E V + AE+ R T D E K
Sbjct: 80 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEHQR-TMEKDPEKK 135
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 136 KYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 195
Query: 262 SDPFANNL 269
+DP+ NN+
Sbjct: 196 ADPWHNNI 203
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 104/192 (54%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL P++F +WAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGL----- 111
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W K + G YFG +P NL + E + + AE+ R T D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR-TMEKDPEKK 167
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP + K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 227
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ V+
Sbjct: 228 ADPWHNNIGDVV 239
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 115/212 (54%), Gaps = 41/212 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFG 141
YL G +PGD+G+DP GLS +P + ++AMLGAAG I PE K G
Sbjct: 65 YLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAG 124
Query: 142 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 196
A+ WF+TG + G T NY+ N + + E+ L+G AE+ R +
Sbjct: 125 LIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPG 178
Query: 197 -------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+LG
Sbjct: 179 SMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILG 238
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 239 YFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 115/212 (54%), Gaps = 41/212 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFG 141
YL G +PGD+G+DP GLS +P + ++AMLGAAG I PE K G
Sbjct: 65 YLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAG 124
Query: 142 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 196
A+ WF+TG + G T NY+ N + + E+ L+G AE+ R +
Sbjct: 125 LIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPG 178
Query: 197 -------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+LG
Sbjct: 179 SMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILG 238
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 239 YFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAG 130
R+ + L P YL G PGD+G+DP L + P++ +WAML G
Sbjct: 41 RVTMSADWLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALLL-DGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 188
+IPEA W K G Y G+ +P + V+A E V +
Sbjct: 101 ILIPEALGL--------GNWVKAQEWAAAPGGQATYLGQPVPWGTLPTVLAIEFVAIAFV 152
Query: 189 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 247
E+ R D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGFSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 248 VTGEGPVENLAKHLSDPFANNLLTVI 273
G GP+ENLA HL+DP+ NN+ +I
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDII 237
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 136/265 (51%), Gaps = 54/265 (20%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEA 148
GDYG+DP GLS +P + ++AMLGAAG I PE K G A
Sbjct: 72 GDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETA 131
Query: 149 V-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----------- 196
+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 132 LPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSMGKQYF 185
Query: 197 LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q V
Sbjct: 186 LGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLV 245
Query: 249 TGEGPVENLAKHLSDPFANNLLTVI 273
TG GP +NL HL+ P NN+LT +
Sbjct: 246 TGVGPYQNLLDHLAGPVNNNVLTSL 270
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 109/206 (52%), Gaps = 22/206 (10%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAG 130
RI + + P YL G PGD+G+DP GL + P++ +WAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 188
++PEA +G W K L G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 189 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 247
E+ R D E K +PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 248 VTGEGPVENLAKHLSDPFANNLLTVI 273
G GP+ENLA HL+DP+ N+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHKNIGDIV 237
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 131/269 (48%), Gaps = 64/269 (23%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S+ K + + +A PP K G DR+++ + YL G
Sbjct: 30 SSRKSASFVVRAEATPPVKQ----------------GADRQLWFAS-----KQSLSYLDG 68
Query: 101 EVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCG 145
+PGD+G+DP GLS +P + ++AMLGAAG I PE F G
Sbjct: 69 SLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGL-IP 127
Query: 146 PEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------- 196
PE WFKTG + G T NY+ P L + E+ L+G AE+ R +
Sbjct: 128 PETALPWFKTGVIPPAG-TYNYWAD--PYTLF---VFEMALMGFAEHRRFQDWAKPGSMG 181
Query: 197 ----LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+LG+F+
Sbjct: 182 KQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI 241
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVI 273
Q VTG GP +NL HLSDP NN+LT +
Sbjct: 242 QGLVTGVGPYQNLLDHLSDPVNNNVLTSL 270
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 103/192 (53%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP GL + P++ +WAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 111
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G+ +P L ++ E + + E+ R D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEK-DPEKK 167
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 227
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ +I
Sbjct: 228 ADPWHNNIGDII 239
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 102/192 (53%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP L + P++ +WAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 109
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 202
W K L G Y G +P + V+A E + + E+ R D E K
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEK-DPEKK 165
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 166 KYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ V+
Sbjct: 226 ADPWHNNIGNVL 237
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 97/163 (59%), Gaps = 18/163 (11%)
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 177
ML A G ++PE + FG E VW+K G L G+ L+Y G IP +V
Sbjct: 1 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLG--IPGFRIAGGQGVVVI 58
Query: 178 VIAEIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 228
I + +L+ G EY R LE D +PGGP FDPLGL+KDP F LKVKE
Sbjct: 59 AICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKE 118
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
IKNGRLAM A GF++QA VTG+GPV+NL +HLSDP NN+L+
Sbjct: 119 IKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILS 161
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 102/192 (53%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP L + P++ +WAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 109
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 202
W K L G Y G +P + V+A E + + E+ R D E K
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQRSMEK-DPEKK 165
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 166 KYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ V+
Sbjct: 226 ADPWHNNIGNVL 237
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 108/206 (52%), Gaps = 22/206 (10%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAG 130
RI + + P YL G PGD+G+DP GL + P + +WAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 188
++PEA +G W K L G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 189 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 247
E+ R D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 248 VTGEGPVENLAKHLSDPFANNLLTVI 273
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDIV 237
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 109/206 (52%), Gaps = 22/206 (10%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAG 130
RI + + P YL G PGD+G+DP GL + P++ +WAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 188
++PEA +G W K + G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 189 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 247
E+ R D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 248 VTGEGPVENLAKHLSDPFANNLLTVI 273
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDIV 237
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 128/258 (49%), Gaps = 55/258 (21%)
Query: 50 SKKKAAPPAKSKPVAVSPVNE-ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
S ++ + +S+ + PV + + W+ D+ + YL G +PGDYG+
Sbjct: 43 SSRRTSFTVRSQASSNKPVKQGDRQLWFASDQSL-------------SYLDGSLPGDYGF 89
Query: 109 DPFGLS--KKPDDF-------------SKWAMLGAAGFIIPEAFNKFGANCGPEAV-WFK 152
DP GL + P F ++AMLGA G I PE K G A+ WF+
Sbjct: 90 DPLGLMDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFQ 149
Query: 153 TGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLED 201
TG + G T NY+ P L + E+ L+G AE+ R+ + L LE
Sbjct: 150 TGVIPPAG-TYNYWAD--PFTLF---VLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLEK 203
Query: 202 KL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253
L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG GP
Sbjct: 204 FLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGP 263
Query: 254 VENLAKHLSDPFANNLLT 271
+NL HL+DP NN LT
Sbjct: 264 FQNLLDHLADPVHNNFLT 281
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 141/293 (48%), Gaps = 58/293 (19%)
Query: 19 MLGNPLNVSSAVRTSAPGASN---PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKW 75
M L SS++ SA A P + + FS+K + K A PV +
Sbjct: 1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASF---LVKAAATPPVKQ----- 52
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS------ 121
G DR ++ + YL G +PGDYG+DP GLS +P +
Sbjct: 53 -GSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIIN 106
Query: 122 -KWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVI 179
++AMLGA G I PE K G A+ WF+TG G T NY+ + + +
Sbjct: 107 GRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FV 160
Query: 180 AEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGPF-DPLGLAKDPDQ 220
E+ L+G AE+ R + L LE L +PGGPF +PLG KD
Sbjct: 161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKS 220
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 221 LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 104/192 (54%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP GL + P + +WAML G ++PEA +G
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 202
W K L G Y G +P + ++A E + + E+ R D E K
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKK 165
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 166 KYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ ++
Sbjct: 226 ADPWHNNIGDIV 237
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 141/293 (48%), Gaps = 58/293 (19%)
Query: 19 MLGNPLNVSSAVRTSAPGASN---PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKW 75
M L SS++ SA A P + + FS+K + K A PV +
Sbjct: 1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASF---LVKAAATPPVKQ----- 52
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS------ 121
G DR ++ + YL G +PGDYG+DP GLS +P +
Sbjct: 53 -GSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIIN 106
Query: 122 -KWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVI 179
++AMLGA G I PE K G A+ WF+TG G T NY+ + + +
Sbjct: 107 GRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FV 160
Query: 180 AEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGPF-DPLGLAKDPDQ 220
E+ L+G AE+ R + L LE L +PGGPF +PLG KD
Sbjct: 161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKS 220
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 221 LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 141/293 (48%), Gaps = 58/293 (19%)
Query: 19 MLGNPLNVSSAVRTSAPGASN---PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKW 75
M L SS++ SA A P + + FS+K + K A PV +
Sbjct: 1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASF---LVKAAATPPVKQ----- 52
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS------ 121
G DR ++ + YL G +PGDYG+DP GLS +P +
Sbjct: 53 -GSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIIN 106
Query: 122 -KWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVI 179
++AMLGA G I PE K G A+ WF+TG + T NY+ + + +
Sbjct: 107 GRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTG-FIPPAGTYNYWADSYTL-----FV 160
Query: 180 AEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGPF-DPLGLAKDPDQ 220
E+ L+G AE+ R + L LE L +PGGPF +PLG KD
Sbjct: 161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKS 220
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 221 LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 100/191 (52%), Gaps = 20/191 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL P++ +WAML G +IPEA N
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGL--GNW 114
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL-DLEDKL 203
W + G Y G +P F +I I + A NG DLE +
Sbjct: 115 VEAQKW-----AAIPGGQATYLGVPVPWGY-FPIILSIFFLKMAFAESQRNGEPDLEKRK 168
Query: 204 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLS 262
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HLS
Sbjct: 169 YPGGAFDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLS 228
Query: 263 DPFANNLLTVI 273
DP+ N+ +I
Sbjct: 229 DPWHKNIAEII 239
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 103/192 (53%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP L + P++ + WAML G ++PEA
Sbjct: 51 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGL----- 105
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G +P + ++A E + + E+ R + G D E K
Sbjct: 106 ---GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR-SMGKDPEKK 161
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP F KVKE+KNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 162 KYPGGAFDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHL 221
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ +I
Sbjct: 222 ADPWHNNIGNII 233
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 135/282 (47%), Gaps = 60/282 (21%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ AVR S S PS+ S+K A + PV V+ L W+ + +
Sbjct: 16 AEAVRQSFRARSLPSSVG----CSRKGLVRAAATPPVKQGGVDRPL--WFASKQSL---- 65
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGF 131
YL G +PGDYG+DP GLS +P + ++AMLGA G
Sbjct: 66 ---------SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGA 116
Query: 132 IIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY 190
I PE K G A+ WF+TG + G T NY+ N + + E+ L+G AE+
Sbjct: 117 IAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEH 170
Query: 191 YRITNG-----------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKN 231
R + L LE +PGGPF +PLG KD LK+KE+KN
Sbjct: 171 RRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKN 230
Query: 232 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
GRLAM A+LG+F+Q VTG GP +NL H++DP NN+LT +
Sbjct: 231 GRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSL 272
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 105/205 (51%), Gaps = 20/205 (9%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAG 130
R+ + + P YL G PGD+G+DP L + P++ +WAML G
Sbjct: 40 RVTMSANWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 99
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAE 189
++PEA N W T G Y G+ +P + ++A E V + E
Sbjct: 100 ILVPEALGL--GNWVKAQEWAAT-----PGGQATYLGQPVPWGTLPIILAIEFVAIAFVE 152
Query: 190 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
+ R D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +G +Q
Sbjct: 153 HQRSMEK-DTEKKKYPGGAFDPLGYSKDPQKFEEYKVKEIKNGRLALLAFVGICVQQTAY 211
Query: 250 -GEGPVENLAKHLSDPFANNLLTVI 273
G GP+ENLA HL+DP+ NN+ V+
Sbjct: 212 PGTGPLENLATHLADPWHNNIGDVL 236
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 113/212 (53%), Gaps = 41/212 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFG 141
YL G +PGDYG+DP GLS +P + ++AMLGA G I PE K G
Sbjct: 68 YLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 127
Query: 142 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 196
A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 128 LIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAKPG 181
Query: 197 -------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG
Sbjct: 182 SMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG 241
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 242 YFVQALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 116/208 (55%), Gaps = 28/208 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWA 124
W+G R ++L G L ++ P++L+GE+PGDYG+DP GL + P ++WA
Sbjct: 123 WFGAARPLWL--GPLS-TQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWA 179
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTG-ALLLDGNTLNYFGK---NIPINLVFAVIA 180
MLGA G ++PE G+ E W+ G A L G L Y G + A+IA
Sbjct: 180 MLGALGAVVPELLQLAGSATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQGVAIIA 239
Query: 181 --EIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
+++L+ G EY R LE DK +PGG FDPL L+ D +++ ++V+EI
Sbjct: 240 FCQVLLMFGPEYARACGISALEPLGVFLPGDKNYPGGWLFDPLQLSGDAERYEAMRVREI 299
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENL 257
KNGRLAM A LGF QA VT +GPV+NL
Sbjct: 300 KNGRLAMVAWLGFAAQAAVTRQGPVQNL 327
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 104/202 (51%), Gaps = 21/202 (10%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAA 129
R+ + G L S+ P YL G +PG +G+DPFGL P + S+WAM G A
Sbjct: 29 RVVMKAGNWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVA 87
Query: 130 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 189
G + GA + W++ ++G Y G +P NL + E V + GAE
Sbjct: 88 GAL--------GAELLGQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAIAGAE 139
Query: 190 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
R D E + +PGG FDPLG +KD K+KE+KNGRLAM A +GF Q T
Sbjct: 140 AQRNAE-PDAEKRKYPGGAFDPLGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQHAAT 198
Query: 250 GEGPVENLAKHLSDPFANNLLT 271
G+GP+E L HL+DP+ N T
Sbjct: 199 GKGPLEALKLHLADPWGANFAT 220
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 101/192 (52%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP L + P++ +WAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 111
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 202
W K + G Y G +P + ++A E + + E+ R D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMEK-DPEKK 167
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGYSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHL 227
Query: 262 SDPFANNLLTVI 273
+DP+ NN+ VI
Sbjct: 228 ADPWHNNIGNVI 239
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 120/266 (45%), Gaps = 54/266 (20%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
SS + S GA+ S L +K +P S+ V V V + PDR ++ P
Sbjct: 19 SSQINGSTVGATKASFLSGKRLTVRKHTSPVVASRSVTVCAVAD-------PDRPLWFPG 71
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEA 136
S P +L G +PGD+G+DP GL P+ +WAMLGAAG IPE
Sbjct: 72 -----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEF 126
Query: 137 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI--- 193
K G P W+ G L +T F I E++ +G AE R
Sbjct: 127 LTKIGILNTPS--WYDAGKLEYFTDTTTLF------------IIELIFIGWAEGRRWADI 172
Query: 194 -------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFA 238
N L D +PGG FDPLG P++ L+ KEIKNGRLAM A
Sbjct: 173 LKPGCVNTDPIFPNNRLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 232
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDP 264
++G + Q TG GP++NL HL+DP
Sbjct: 233 VMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 132/292 (45%), Gaps = 61/292 (20%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS+ ASS AA ++ SS S GA+ S L KK AP A +
Sbjct: 1 MASVCASSAMAAV--------ATISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGT 52
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ VS + P+R ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 53 RSFTVSAAAAD------PNRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETL 101
Query: 121 ----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 170
+WAMLGAAG IPE K G P W+ G L YF
Sbjct: 102 KWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEL-------EYFTDKT 152
Query: 171 PINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLG 213
+ +V E++ +G AE R N L D +PGG FDPLG
Sbjct: 153 TLFIV-----EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 207
Query: 214 LAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
PD+ L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 208 WGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADP 259
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 86/127 (67%), Gaps = 5/127 (3%)
Query: 147 EAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--D 201
EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G E D
Sbjct: 12 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLD 71
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 261
L+PG FDPLGLA DP+ A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 72 PLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHL 131
Query: 262 SDPFANN 268
+DP ANN
Sbjct: 132 ADPVANN 138
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 132/263 (50%), Gaps = 52/263 (19%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPV S+ AA P V SP +A +R +LP GL + P +L G +P
Sbjct: 21 KPVTALSRSMAAIPGHH--VFQSP-RARIAVRASTERATWLP-GL----DPPPHLDGTLP 72
Query: 104 GDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 153
GD+G+DP GL ++P + ++AM G AG + + G N P VWF+
Sbjct: 73 GDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLP--VWFEA 130
Query: 154 GALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------------LE 200
GA D NT F +++L+G AE R + ++ +E
Sbjct: 131 GATKFDFANTTALF------------FVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIE 178
Query: 201 DKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253
L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +QA VT GP
Sbjct: 179 AALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGP 238
Query: 254 VENLAKHLSDPFANNLLTVISGN 276
++NL HLSDPF N++ +S +
Sbjct: 239 IDNLLTHLSDPFNKNIIHTLSSS 261
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 102/188 (54%), Gaps = 22/188 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP GL + P + +WAML G ++PEA +G
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 63
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 202
W K L G Y G +P + ++A E + + E+ R D E K
Sbjct: 64 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKK 117
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 261
+PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 118 KYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 177
Query: 262 SDPFANNL 269
+DP+ NN+
Sbjct: 178 ADPWHNNI 185
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 134/302 (44%), Gaps = 62/302 (20%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS ASST AA +P SS S GA+ S L K AP S
Sbjct: 1 MASACASSTIAAV-----AFSSP---SSQKNGSIVGATKASFLGGKRLRVSKFIAP-VGS 51
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ VAVS V + PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 52 RSVAVSAVAAD------PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESL 100
Query: 121 ----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 170
S+WAMLGAAG IPE K G P W+ G +T F
Sbjct: 101 KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF---- 154
Query: 171 PINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLG 213
+ E+VL+G AE R N L D +PGG FDPLG
Sbjct: 155 --------VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206
Query: 214 LAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP +
Sbjct: 207 WGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAA 266
Query: 273 IS 274
S
Sbjct: 267 FS 268
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 95/169 (56%), Gaps = 19/169 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 36 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 92
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 93 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 151
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 228
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP FA LKV E
Sbjct: 152 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPKAFAELKVNE 200
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 132/264 (50%), Gaps = 52/264 (19%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEA 148
GDYG+DP GLS +P + ++AMLGAAG I PE K G A
Sbjct: 72 GDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETA 131
Query: 149 VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------L 197
+ ++ T Y+ N + + E+ L+G AE+ R+ + L
Sbjct: 132 LPXXQTGVIPPAGTYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSMGKQYFL 186
Query: 198 DLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q VT
Sbjct: 187 GLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 246
Query: 250 GEGPVENLAKHLSDPFANNLLTVI 273
G GP +NL HL+DP NN+LT +
Sbjct: 247 GVGPYQNLLDHLADPVNNNVLTSL 270
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 125/248 (50%), Gaps = 52/248 (20%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK----- 115
K A+ PV + G DR ++ + YL G +PGDYG+DP GLS
Sbjct: 43 KAAAIPPVKQ------GSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLSDPEGTG 91
Query: 116 ---KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLN 164
+P + ++AMLGA G I PE K G A+ WF+TG G T N
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYN 150
Query: 165 YFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPG 206
Y+ + + + E+ L+G AE+ R + L LE L +PG
Sbjct: 151 YWADSYTL-----FVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPG 205
Query: 207 GPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 265
GPF +PLG KD LK+KE+KNGRLAM A+LG+F++A VTG GP +NL HL+DP
Sbjct: 206 GPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVRALVTGVGPYQNLLDHLADPV 265
Query: 266 ANNLLTVI 273
NN+LT +
Sbjct: 266 HNNILTSL 273
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 101/191 (52%), Gaps = 20/191 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP L + P++ +WAML G ++PEA N
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGL--GNW 112
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 203
W + G Y G +P NL + E + + E+ R D E K
Sbjct: 113 VQAQEWAA-----IPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEK-DTEKKK 166
Query: 204 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 262
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 167 YPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLA 226
Query: 263 DPFANNLLTVI 273
DP+ NN+ VI
Sbjct: 227 DPWHNNIGDVI 237
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 114/221 (51%), Gaps = 24/221 (10%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----- 120
SP + + + +G R+ + + P +L G PGD+G+DP L P++
Sbjct: 29 SPTSSLVGRRHG--SRVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKE 86
Query: 121 -----SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 175
+WAML G +IPEA N W + G+ YFG +P +
Sbjct: 87 SELIHCRWAMLAVPGMLIPEALGL--GNWVEAQKW-----AAIPGSQATYFGVPVPWGYL 139
Query: 176 FAVIA-EIVLVGGAEYYRITNGL-DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 233
V+A E + + E R NG D E + +PGG FDPLG +KDP +F KVKEIKNGR
Sbjct: 140 PIVLAVEFLAIAFVESQR--NGEPDPEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGR 197
Query: 234 LAMFAMLGFFLQAYVT-GEGPVENLAKHLSDPFANNLLTVI 273
LA+ A +GF +QA G GP+ENLA HLSDP+ N+ +I
Sbjct: 198 LALLAFVGFCVQASANPGTGPLENLATHLSDPWHRNIAEII 238
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 146/297 (49%), Gaps = 52/297 (17%)
Query: 19 MLGNPLN-VSSAVRTSAPGASNPSTFKPVAL-----FSKKK---AAPPAKSKPVAVSPVN 69
++ NPL+ +++++ ++ A+ S P + F++KK A A ++P A S
Sbjct: 7 LIRNPLSFLNTSIHSTMATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQA-SKAA 65
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD---------- 119
+ + K DR++F + YL G PGD+GYDP GL K P+
Sbjct: 66 KFVVKAEKSDRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWL 119
Query: 120 ------FSKWAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKTGALLLDGNTLNYFGKNI 170
++AMLG AG + PE K G A G VWFKTG + +G +Y+ +
Sbjct: 120 AYSEVIHCRYAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGVIPSEGQ-YDYWASPL 176
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNG------LDLE-------DKLHPGGP-FDPLGLAK 216
+ + V+ + + + YR L LE D +PGG F+ LG K
Sbjct: 177 ALFWIEVVLMQFAELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGK 236
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
D LK+KE+KNGRLAM A LGFF+QA TGEGP +NL HL+DPF NN+LT
Sbjct: 237 DEKSMNDLKLKELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 293
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 132/263 (50%), Gaps = 52/263 (19%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPV S+ AA P V SP +A +R +LP GL + P +L G +P
Sbjct: 21 KPVTALSRSMAAIPGHH--VFQSP-RARIAVRASTERATWLP-GL----DPPPHLDGTLP 72
Query: 104 GDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 153
GD+G+DP GL ++P + ++AM G AG + + G N P VWF+
Sbjct: 73 GDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDFIRVSGINNLP--VWFEA 130
Query: 154 GALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------------LE 200
GA D NT F +++L+G AE R + ++ +E
Sbjct: 131 GATKFDFANTTALF------------FVQLLLMGFAETKRYMDFINPGSQAEEGTFLGIE 178
Query: 201 DKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253
L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +QA VT GP
Sbjct: 179 AALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGP 238
Query: 254 VENLAKHLSDPFANNLLTVISGN 276
++NL HLSDPF N++ +S +
Sbjct: 239 IDNLLTHLSDPFNKNIIHTLSSS 261
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 102/191 (53%), Gaps = 24/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++F +WAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 111
Query: 145 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 201
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 112 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 166
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 260
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+EN H
Sbjct: 167 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENPGTH 226
Query: 261 LSDPFANNLLT 271
L+DP+ N T
Sbjct: 227 LADPWHNTSAT 237
>gi|16930763|gb|AAL32041.1|AF439282_1 chl a/b-binding protein [Retama raetam]
Length = 99
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 78/100 (78%), Gaps = 7/100 (7%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFS---KKKAAPP 57
MASLAAS T A S+G EMLGNP+N+S R AP SNP+TFK VALFS KKKAAPP
Sbjct: 1 MASLAAS-TAAGSLGMSEMLGNPINLSGVTRL-APSPSNPATFKTVALFSNFNKKKAAPP 58
Query: 58 AKSKPVA--VSPVNEELAKWYGPDRRIFLPEGLLDRSEIP 95
K KP A VSP ++ELAKWYGPDRRIFLP+GLLDRSEIP
Sbjct: 59 PKQKPAAAAVSPADDELAKWYGPDRRIFLPDGLLDRSEIP 98
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 63 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 122
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 123 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 153
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 107/206 (51%), Gaps = 22/206 (10%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAG 130
R+ + + + P +L G PGD+G+DP L P++ +WAML G
Sbjct: 43 RVSMSDEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPG 102
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAE 189
+IPEA N W + GN Y G +P + ++A E + + E
Sbjct: 103 VLIPEALGL--GNWVEAQKW-----AAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVE 155
Query: 190 YYRITNGL-DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
R NG D E + +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA
Sbjct: 156 SQR--NGEPDPEKRKYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASA 213
Query: 249 T-GEGPVENLAKHLSDPFANNLLTVI 273
G GP+ENLA HLSDP+ N+ +I
Sbjct: 214 NPGTGPLENLATHLSDPWHKNIAEII 239
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 22/210 (10%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAML 126
G RI + + P YL G PGD+G+DP L + P++ +WAML
Sbjct: 37 GSSSRITMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAML 96
Query: 127 GAAGFIIPEAFNKFGANCGPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVL 184
G ++PEA W K + G Y G+ +P L ++ E +
Sbjct: 97 AVPGILVPEALGL--------GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLA 148
Query: 185 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
+ E+ R D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +G +
Sbjct: 149 IAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGICV 207
Query: 245 -QAYVTGEGPVENLAKHLSDPFANNLLTVI 273
Q+ G GP+ENLA HL+DP+ NN+ +I
Sbjct: 208 QQSAYPGTGPLENLATHLADPWHNNIGDII 237
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 137/278 (49%), Gaps = 54/278 (19%)
Query: 29 AVRTSAPG--ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
A+ T+A G S KP FS+ AA P P +A+ +R +LP
Sbjct: 2 ALATNAHGRVIHTCSLSKPPTAFSRSTAAMPGHH---VQPPRARVVARASAAERATWLP- 57
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEA 136
GL + P YL G +PGDYG+DP GL ++P D ++AM G AG + +
Sbjct: 58 GL----DPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGTDL 113
Query: 137 FNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAE---YYR 192
G + P VWF+ GA D NT F +++L+G E Y
Sbjct: 114 IRVSGISNLP--VWFEAGATKFDFANTTALF------------FVQLLLMGFVETKRYMD 159
Query: 193 ITNG---------LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 236
I N L +E L +PGGP F+P+GLAKD +K+KEIKNGRLAM
Sbjct: 160 IVNPGSQAEEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAM 219
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
AMLGFF+QA VT GP++NL HLSDPF NN++ +
Sbjct: 220 VAMLGFFVQASVTHVGPIDNLLIHLSDPFNNNIIHAFT 257
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 116/217 (53%), Gaps = 41/217 (18%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEA 136
S+ YL G +PGDYG+DP GLS +P + ++AMLGAAG I PE
Sbjct: 60 SQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 119
Query: 137 FNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 195
K G A+ WF+TG + G T +Y+ N + + E+ L+G AE+ R+ +
Sbjct: 120 LGKAGLIPAETALPWFQTGVIPPAG-TYSYWADNYTL-----FVLEMALMGFAEHRRLQD 173
Query: 196 G-----------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAM 236
L LE +PGGPF +PLG K+ LK+KEIKNGRLAM
Sbjct: 174 WYNPGSMGKQYFLGLEKGFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAM 233
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 234 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 102/192 (53%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP L P++ +WAML G +IPEA N
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGL--GNW 114
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGL-DLEDK 202
W + GN Y G +P + ++A E + + E R NG D E +
Sbjct: 115 VEAQKW-----AAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR--NGEPDPEKR 167
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 261
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 227
Query: 262 SDPFANNLLTVI 273
SDP+ N+ +I
Sbjct: 228 SDPWHKNIAEII 239
>gi|115821|sp|P14275.1|CB2C_SOLLC RecName: Full=Chlorophyll a-b binding protein 1C, chloroplastic;
AltName: Full=LHCII type I CAB-1C; Short=LHCP; Flags:
Precursor
Length = 265
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 222
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 63 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 122
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 123 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 153
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 165 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 224
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 65 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 124
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 125 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 155
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 165 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 224
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 65 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 124
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 125 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 155
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 148 AVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DK 202
AVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G E D
Sbjct: 1 AVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP 60
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+QA VTG+GP+ENL HL+
Sbjct: 61 LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGKGPIENLYDHLA 120
Query: 263 DPFANN 268
DP NN
Sbjct: 121 DPSTNN 126
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 131/271 (48%), Gaps = 55/271 (20%)
Query: 39 NPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYL 98
P + P FS + A K + PV + G DR+++ + YL
Sbjct: 21 RPVQWTPTRSFSSSRKASFV-VKAASTPPVKQ------GADRQLWFAS-----KQSLSYL 68
Query: 99 TGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGAN 143
G +PGD+G+DP GLS +P + ++AMLG AG I PE K G
Sbjct: 69 DGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGL- 127
Query: 144 CGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----- 196
PE WF+TG + G T +Y+ P L + E+ L+G AE+ R +
Sbjct: 128 IPPETALPWFQTGVIPPAG-TYSYWAD--PYTLF---VLEMALMGFAEHRRFQDWAKPGS 181
Query: 197 ------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
L E D +PGGP F+PLG KD LK+KE+KNGRLAM A+LGF
Sbjct: 182 MGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAILGF 241
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 242 FIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 272
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 116/210 (55%), Gaps = 30/210 (14%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
+YG +R FL G L+ E P +L G + GD G+DP L+ K +D + WA
Sbjct: 31 FYGANRVKFL--GDLE-YEYPAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHGRWA 87
Query: 125 MLGAAGFIIPEAFNKFG-ANCGPEAVWFKTGALLLDGNT----LNYFGKNIPINLVFAVI 179
MLG G +PE ++FG AN G E VW+K GA ++ + L + G +I AVI
Sbjct: 88 MLGVVGAAVPETLDRFGVANLG-EPVWWKVGAAKMNSDIALDYLGFSGFHIAGGSGIAVI 146
Query: 180 A--EIVLVGGAEYYRITNGLDLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKE 228
A ++VL+GG EY R LE DK +PGG PFDP + D ++F KV E
Sbjct: 147 AACQLVLMGGPEYARYVGINSLEPVGVYLPGDKDYPGGAPFDPFKFSDDAEEFEKQKVME 206
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLA 258
IK+ RLAM A LG +QA VT +GP+ENLA
Sbjct: 207 IKHCRLAMIAALGCAIQAIVTRQGPIENLA 236
>gi|115816|sp|P14274.1|CB2A_SOLLC RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type I CAB-1A; Short=LHCP; Flags:
Precursor
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 222
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|167997433|ref|XP_001751423.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697404|gb|EDQ83740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 244
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 70/89 (78%), Gaps = 2/89 (2%)
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
+VL+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 144 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 203
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANN 268
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 204 FGFFVQAIVTGKGPLENLNDHLADPVANN 232
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 111/210 (52%), Gaps = 41/210 (19%)
Query: 97 YLTGEVPGDYGYDPFGLS--KKPDDF-------------SKWAMLGAAGFIIPEAFNKFG 141
YL G +PGDYG+DP GL + P F ++AMLGA G I PE K G
Sbjct: 80 YLDGSLPGDYGFDPLGLMDPEGPGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGKLG 139
Query: 142 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 196
A+ WF+TG + G T +Y+ P L + E+ L+G AE+ R+ +
Sbjct: 140 LIPQETALPWFRTGVIPPAG-TYDYWAD--PFTLF---VLEMALMGFAEHRRLQDYRYPG 193
Query: 197 -------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
L E L +PGGP F+PLG KD LK+KE+KNGRLAM A++G
Sbjct: 194 SMSKQYFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAIVG 253
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
+F+Q VTG GP +NL HL+DP NNLLT
Sbjct: 254 YFIQGLVTGVGPFQNLLDHLADPVNNNLLT 283
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 101/191 (52%), Gaps = 20/191 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP L + P++ +WAML G ++PEA N
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGL--GNW 69
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 203
W + G Y G +P NL + E + + E+ R D E K
Sbjct: 70 VQAQEW-----AAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEK-DTEKKK 123
Query: 204 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 262
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 124 YPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLA 183
Query: 263 DPFANNLLTVI 273
DP+ NN+ VI
Sbjct: 184 DPWHNNIGDVI 194
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 103/192 (53%), Gaps = 22/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP L P++ +WAML G +IPEA N
Sbjct: 17 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGL--GNW 74
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGL-DLEDK 202
W + G+ YFG +P + V+A E + + E R NG D E +
Sbjct: 75 VEAQKW-----AAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQR--NGEPDPEKR 127
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 261
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HL
Sbjct: 128 KYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 187
Query: 262 SDPFANNLLTVI 273
SDP+ N+ +I
Sbjct: 188 SDPWHRNIAEII 199
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 131/271 (48%), Gaps = 55/271 (20%)
Query: 39 NPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYL 98
P + P FS + A K + PV + G DR+++ + YL
Sbjct: 21 RPVQWTPSRSFSSSRKASFV-VKAASTPPVKQ------GADRQLWFAS-----KQSLSYL 68
Query: 99 TGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGAN 143
G +PGD+G+DP GLS +P + ++AMLG AG I PE K G
Sbjct: 69 DGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGL- 127
Query: 144 CGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----- 196
PE WF+TG + G T +Y+ P L + E+ L+G AE+ R +
Sbjct: 128 IPPETALPWFQTGVIPPAG-TYSYWAD--PYTLF---VLEMALMGFAEHRRFQDWAKPGS 181
Query: 197 ------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
L E D +PGGP F+PLG KD LK+KE+KNGRLAM A+LGF
Sbjct: 182 MGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGF 241
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 242 FIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 272
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 101/188 (53%), Gaps = 22/188 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFGANC 144
P +L G PGD+G+DP GL+ P++ +WAML G ++PEA
Sbjct: 26 PVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEALGL----- 80
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W K + G YFG +P NL + E + + AE+ R T D E K
Sbjct: 81 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR-TMEKDPEKK 136
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY-VTGEGPVENLAKHL 261
+PGG FDPLG +KDP + K+KEI+NGRLAM A +GF +Q G GP+ENLA HL
Sbjct: 137 KYPGGAFDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCVQQSPYPGTGPLENLASHL 196
Query: 262 SDPFANNL 269
+DP+ NN+
Sbjct: 197 ADPWHNNI 204
>gi|159138421|gb|ABW89213.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138423|gb|ABW89214.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138425|gb|ABW89215.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138429|gb|ABW89217.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138433|gb|ABW89219.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138437|gb|ABW89221.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138439|gb|ABW89222.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138441|gb|ABW89223.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138443|gb|ABW89224.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138445|gb|ABW89225.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138447|gb|ABW89226.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138451|gb|ABW89228.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138453|gb|ABW89229.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138455|gb|ABW89230.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138457|gb|ABW89231.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Query: 181 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 15 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 74
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 75 MFGFFVQAIVTGKGPLENLADHLADPVANN 104
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 112/213 (52%), Gaps = 43/213 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFG 141
YL G +PGDYG+DP GLS +P + ++AMLGA G I PE K G
Sbjct: 65 YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKLG 124
Query: 142 ANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 196
PE WFKTG G T NY+ P L + E+ L+G AE+ R +
Sbjct: 125 L-IPPETALPWFKTGVFPPAG-TYNYWAD--PYTLF---VFEMALMGFAEHRRFQDWANP 177
Query: 197 --------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
L LE D +PGGP F+PLG KD LK+KE+KNGRLAM A+L
Sbjct: 178 GSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 237
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
G+F Q VTG GP++NL HL+DP NN++T +
Sbjct: 238 GYFAQGPVTGVGPLQNLLDHLADPVNNNIITSL 270
>gi|159138427|gb|ABW89216.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138431|gb|ABW89218.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138435|gb|ABW89220.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Query: 181 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 15 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 74
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 75 MFGFFVQAIVTGKGPLENLADHLADPVANN 104
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 128/261 (49%), Gaps = 46/261 (17%)
Query: 49 FSKKK---AAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
F++KK A A ++P A S + + K DR++F + YL G PGD
Sbjct: 21 FAEKKFLGARVAAAARPQA-SKAAKFVVKAEKSDRQLFFSD-----KAAQSYLDGSKPGD 74
Query: 106 YGYDPFGLSKKPDD----------------FSKWAMLGAAGFIIPEAFNKFG---ANCGP 146
+GYDP GL K P+ ++AMLG AG + PE K G A G
Sbjct: 75 FGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCRYAMLGMAGMVAPEILGKLGLIPAETG- 132
Query: 147 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------LDLE 200
VWFKTG + +G +Y+ + + + V+ + + + YR L LE
Sbjct: 133 -LVWFKTGVIPSEGQ-YDYWASPLALFWIEVVLMQFAELRRWQDYRHPGSQSKQYFLGLE 190
Query: 201 -------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 252
D +PGG F+ LG KD LK+KE+KNGRLAM A LGFF+QA TGEG
Sbjct: 191 QFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRLAMVATLGFFIQAMATGEG 250
Query: 253 PVENLAKHLSDPFANNLLTVI 273
P +NL HL+DPF NN+LT
Sbjct: 251 PFQNLTDHLADPFNNNILTTF 271
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 105/198 (53%), Gaps = 20/198 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGDYG+DP GL ++P+D ++AM G AG + + G
Sbjct: 60 PAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGIGN 119
Query: 145 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 203
P VWF+ GA D NT F + + + V + L +E L
Sbjct: 120 LP--VWFEAGATKFDFANTTALFFVQLLLMGFVETKRYMDFVSPGSQAKEGTFLGIEASL 177
Query: 204 ------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 256
+PGGP F+P+GLAKD + +K+KEIKNGRLAM AMLGF +QA VT GP++N
Sbjct: 178 EGLQPGYPGGPLFNPMGLAKDIENANEVKLKEIKNGRLAMVAMLGFIVQASVTHAGPIDN 237
Query: 257 LAKHLSDPFANNLLTVIS 274
L HLSDPF N++ ++
Sbjct: 238 LLTHLSDPFNKNIIHALT 255
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 97/188 (51%), Gaps = 22/188 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP L + P++ +WAML G ++PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 110
Query: 145 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W K L G Y G +P L ++ E + + E+ R D E K
Sbjct: 111 ---GNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKK 166
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 261
+PGG FDPLG +KDP +F K+KE+KNGRLA+ A +G +Q G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYPGTGPLENLATHL 226
Query: 262 SDPFANNL 269
+DP+ NN+
Sbjct: 227 ADPWHNNI 234
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 132/278 (47%), Gaps = 50/278 (17%)
Query: 24 LNVSSAVRTSAPGASNPSTFKP--VALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
L++SS ++ P P A + ++ AK VS V E L PDR
Sbjct: 3 LSISSTALSTFPNTEKRHKVFPERTATWLPRRIHTNAKK---GVSDVCEPLP----PDRP 55
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGF 131
++ P S PE+L G +PGD+G+DP GL P+ ++WAMLG +G
Sbjct: 56 LWFPG-----SSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGI 110
Query: 132 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYY 191
+IPE K G W++ G T YF P L +A + V G +
Sbjct: 111 LIPELLEKMGYV--ENYSWYEAG-------TQEYFAD--PTTLFIVQLALMGWVEGRRWA 159
Query: 192 RITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAM 236
+ N +D+E KL +PGG FDP+ + P+ +L+ KEIKNGRLAM
Sbjct: 160 DLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAM 219
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
A +GF+ QA TG+GP+ENL HL+DP N+ + +
Sbjct: 220 LAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFT 257
>gi|115822|sp|P10707.1|CB2D_SOLLC RecName: Full=Chlorophyll a-b binding protein 1D; AltName:
Full=LHCII type I CAB-1D; Short=LHCP
gi|170428|gb|AAA34158.1| chlorophyll a/b-binding protein Cab-1D, partial [Solanum
lycopersicum]
gi|224929|prf||1204205D protein 1D,chlorophyll binding
Length = 116
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 73
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 74 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
>gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-1A, partial [Solanum
lycopersicum]
gi|170414|gb|AAA34152.1| chlorophyll a/b-binding protein Cab-1C, partial [Solanum
lycopersicum]
Length = 116
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 73
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 74 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
>gi|159138449|gb|ABW89227.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 71/90 (78%), Gaps = 2/90 (2%)
Query: 181 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YRI G ++ D L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 15 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPXAFAELKVKEIKNGRLAMFS 74
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 75 MFGFFVQAIVTGKGPLENLADHLADPVANN 104
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 106/225 (47%), Gaps = 47/225 (20%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR I+ P S P +L G +PGD+G+DPFGL P+ +WAMLG
Sbjct: 55 PDRPIWFPG-----SVPPPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLG 109
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 110 AAGIFIPEFLTKIGILSTPS--WYTAGEQQYFTDTTTLF------------IIELILIGW 155
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 156 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKLKELRTKEI 215
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
KNGRLAM A++G + QA TG GP++NL HL+DP N+ +
Sbjct: 216 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHANIFQAFT 260
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 103/207 (49%), Gaps = 38/207 (18%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGA 128
DR ++LP + P +L G +PGDYGYDP GL+ PD + +WAM G
Sbjct: 38 DRTLWLPN-----TVPPAHLNGTLPGDYGYDPIGLATDPDRLAWFVEAERTNGRWAMAGV 92
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 188
AG + +A + A WF GA L PI L E V+ G
Sbjct: 93 AGILFTDALHI------GSAPWFSIGAEL-----------ESPIPLWGLATIEFVIFGFL 135
Query: 189 EYYRITNGLDL-EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 247
E R+ ++ L PFDPLG+ + VKE+KNGRLAMFA GF +QA
Sbjct: 136 EMKRLEGWKKTGQNGLLNWFPFDPLGMNSKE-----MMVKEVKNGRLAMFAWCGFMVQAL 190
Query: 248 VTGEGPVENLAKHLSDPFANNLLTVIS 274
VT EGPV NL KH++DPF NN +T I+
Sbjct: 191 VTREGPVTNLEKHIADPFNNNFITSIA 217
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 136/279 (48%), Gaps = 59/279 (21%)
Query: 30 VRTSAPGASNPSTFKPVALFSKKKA-APPAKSKPVAVSPVNEELAKWY-GPDRRIFLPEG 87
RT++P +PVA +S ++ + PA SP +A G R +LP G
Sbjct: 18 TRTASP--------RPVAGWSCRRTLSTPAHHHHARSSPRARVVAVRAAGTQRATWLP-G 68
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAF 137
L + P YL G +PGD+G+DP GL ++P+ ++AM G AG + +
Sbjct: 69 L----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLL 124
Query: 138 NKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 196
G + P VWF+ GA D NT F ++ L+G AE R +
Sbjct: 125 RVSGNSDLP--VWFEAGAAKFDFANTTALF------------FVQLFLMGFAETKRYMDF 170
Query: 197 ------------LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
+ LE L +PGGP F+PLGLAKD + K+KEIKNGRLAM
Sbjct: 171 KNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMV 230
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
AMLGF +QA VT GP++NL HLSDPF N++ S +
Sbjct: 231 AMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 269
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 110/210 (52%), Gaps = 44/210 (20%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFG 141
SEIP YL GE+PGD+G+DP L + P +WAML AAG + + G
Sbjct: 45 SEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLG 104
Query: 142 ANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN---- 195
A GP A WFK + YF P + +F I E++L E R +
Sbjct: 105 AG-GPAAATPWFKA-------SDFTYFA---PTSTLF--IVELLLFAWVEVRRYQDMVKP 151
Query: 196 GLDLEDKL-------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
G +D + +PGG FDPLG +K A LK+KEIKN RLAM A+LGF
Sbjct: 152 GSTNQDPIFSQYSLPSGNEPGYPGGIFDPLGYSKG--NMAELKLKEIKNARLAMLAVLGF 209
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
F+QA TG+ P+++L+ HL+DP++NN+ +
Sbjct: 210 FVQAKTTGKTPLDSLSSHLADPWSNNVFGI 239
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 96/175 (54%), Gaps = 25/175 (14%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
KSKPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 38 KSKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 88
Query: 119 DF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
F S+WAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 89 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 147
Query: 169 N--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 218
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP
Sbjct: 148 PSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDP 202
>gi|170421|gb|AAA34155.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
gi|170426|gb|AAA34157.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 116
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 73
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 74 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 104
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 147/308 (47%), Gaps = 60/308 (19%)
Query: 2 ASLAASSTPAASIGAKEMLGNPLNVSS-AVRTSAPGASNPSTFKPVALFSKKKA-APPAK 59
SL T A++ + N + S+ RT++P +PVA +S ++ + PA
Sbjct: 35 CSLPGKQTSPAAMASTVTAANSSHGSALRTRTASP--------RPVAGWSCRRTLSTPAH 86
Query: 60 SKPVAVSPVNEELAKWY-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
SP +A G R +LP GL + P YL G +PGD+G+DP GL ++P+
Sbjct: 87 HHHARPSPRARVVAVRAAGTQRATWLP-GL----DPPPYLDGTLPGDFGFDPLGLGEEPE 141
Query: 119 DF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFG 167
++AM G AG + + G + P VWF+ GA D NT F
Sbjct: 142 ALKWYVQAELVHCRFAMAGVAGILFTDLLRVSGNSDLP--VWFEAGAAKFDFANTTALF- 198
Query: 168 KNIPINLVFAVIAEIVLVGGAEYYRITNG------------LDLEDKL------HPGGP- 208
++ L+G AE R + + LE L +PGGP
Sbjct: 199 -----------FVQLFLMGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPL 247
Query: 209 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
F+PLGLAKD + K+KEIKNGRLAM AMLGF +QA VT GP++NL HLSDPF N
Sbjct: 248 FNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKN 307
Query: 269 LLTVISGN 276
++ S +
Sbjct: 308 IIHTFSSS 315
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 27 CQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 86
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 87 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 117
>gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida]
Length = 125
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 23 CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 82
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 83 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 113
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 136/279 (48%), Gaps = 59/279 (21%)
Query: 30 VRTSAPGASNPSTFKPVALFSKKKA-APPAKSKPVAVSPVNEELAKWY-GPDRRIFLPEG 87
RT++P +PVA +S ++ + PA SP +A G R +LP G
Sbjct: 18 TRTASP--------RPVAGWSCRRTLSTPAHHHHARPSPRARVVAVRAAGTQRATWLP-G 68
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAF 137
L + P YL G +PGD+G+DP GL ++P+ ++AM G AG + +
Sbjct: 69 L----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLL 124
Query: 138 NKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 196
G + P VWF+ GA D NT F ++ L+G AE R +
Sbjct: 125 RVSGNSDLP--VWFEAGAAKFDFANTTALF------------FVQLFLMGFAETKRYMDF 170
Query: 197 ------------LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
+ LE L +PGGP F+PLGLAKD + K+KEIKNGRLAM
Sbjct: 171 KNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMV 230
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
AMLGF +QA VT GP++NL HLSDPF N++ S +
Sbjct: 231 AMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 269
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 110/225 (48%), Gaps = 47/225 (20%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGA 128
DR ++LP SE P++L G +PGDYG+DP L+ +P + +WAMLGA
Sbjct: 64 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 118
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 188
AG IPE K G P W+K G YF + I E++L+ A
Sbjct: 119 AGIFIPELLTKIGILNTPS--WYKAG-------DATYFADQGTL-----FIVELLLMAWA 164
Query: 189 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIK 230
E R N L D +PGG FDPLG D+ ++ KE+K
Sbjct: 165 ESRRWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVK 224
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 275
NGRLAM A+LG F+QA VT GP++NL HL+DP+ +L + G
Sbjct: 225 NGRLAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSLFG 269
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 110/224 (49%), Gaps = 47/224 (20%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGA 128
DR ++LP SE P++L G +PGDYG+DP L+ +P + +WAMLGA
Sbjct: 13 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 67
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 188
AG IPE K G P W+K G YF + I E++L+ A
Sbjct: 68 AGIFIPELLTKIGILNTPS--WYKAG-------DATYFADQGTL-----FIVELLLMAWA 113
Query: 189 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIK 230
E R N L D +PGG FDPLG D+ ++ KE+K
Sbjct: 114 ESRRWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVK 173
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
NGRLAM A+LG F+QA VT GP++NL HL+DP+ +L +S
Sbjct: 174 NGRLAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSVS 217
>gi|169201|gb|AAA33704.1| Major Cab protein [Petunia x hybrida]
Length = 129
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 29 CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 88
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 89 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 119
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 124/271 (45%), Gaps = 55/271 (20%)
Query: 26 VSSAVRTSA----PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
VS++ T+A PGA+ S+F A S + A+S S A PDR
Sbjct: 4 VSASSSTTAVAALPGAARASSFLGGAGRSGRLLLRQAESSSARASFAVRAAA----PDRP 59
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGF 131
I+ P S P +L G +PGD+G+DP GL P+ +WAMLGAAG
Sbjct: 60 IWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGI 114
Query: 132 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYY 191
IPE K G P W+ G +T F I E++L+G AE
Sbjct: 115 FIPEFLTKIGILNTPS--WYTAGEQQYFTDTTTLF------------IIELILIGWAEGR 160
Query: 192 RI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGR 233
R N L D +PGG FDPLG P++ L+ KEIKNGR
Sbjct: 161 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGR 220
Query: 234 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
LAM A++G + QA TG GP++NL HL+DP
Sbjct: 221 LAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 251
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 121/233 (51%), Gaps = 48/233 (20%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK--------KPDDFS------- 121
G DR+++ + YL G +PGD+G+DP GLS +P +
Sbjct: 50 GADRQLWFAS-----KQSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIING 104
Query: 122 KWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVI 179
++AMLGAAG I PE K G PE WF+TG + G T +Y+ P L +
Sbjct: 105 RFAMLGAAGAIAPEILGKAGL-IPPETALPWFQTGVIPPAG-TYDYWAD--PYTLF---V 157
Query: 180 AEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQ 220
E+ L+G AE+ R + L LE D +PGGP F+PLG KD
Sbjct: 158 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS 217
Query: 221 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LK+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 218 MKELKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 105/206 (50%), Gaps = 26/206 (12%)
Query: 78 PDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAML 126
P R + G L S+ P YL +P YG+DP GL+K+ + WAML
Sbjct: 20 PRARTVMKAGNWLPGSDTPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAML 78
Query: 127 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 186
GAAG + E +G W+ L+ G + YFG +IP +L E +
Sbjct: 79 GAAGVLGVEVLG-YGN-------WYDAPLPLVQGGSATYFGASIPFDLGTLAAIEFAAMA 130
Query: 187 GAEYYRITNGLDLEDKLHPGGPFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQ 245
GAE +R + E +++PGGPFDP G++K + D+ L+ KEIKNGRLAM A LGF Q
Sbjct: 131 GAESFR--GAAEPEKRVYPGGPFDPAGMSKGNQDE---LRTKEIKNGRLAMIACLGFVAQ 185
Query: 246 AYVTGEGPVENLAKHLSDPFANNLLT 271
TG P+E L HL++P N T
Sbjct: 186 HAATGASPLEALGAHLANPMVANFAT 211
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 102/202 (50%), Gaps = 23/202 (11%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAA 129
R+ + G L S+ P +L ++PG+YG+DP L K+P +WAMLG A
Sbjct: 27 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 86
Query: 130 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 189
G + E W+ ++G +FG +P +L + E V + AE
Sbjct: 87 GSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 138
Query: 190 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q T
Sbjct: 139 GQRG----DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAAT 194
Query: 250 GEGPVENLAKHLSDPFANNLLT 271
G+GP+ L +HL++P+ N T
Sbjct: 195 GKGPIAALGEHLANPWGANFAT 216
>gi|169199|gb|AAA33703.1| Major Cab protein [Petunia x hybrida]
Length = 136
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 150 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLH 204
W + + L+Y G I + AV A ++VL+G E YR+ G ++ D L
Sbjct: 1 WIPAVSQIFSEGELDYLGNPSLIHAQSILAVWACQVVLMGAVEGYRVAGGPLGEVIDPLC 60
Query: 205 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP ENLA HL+DP
Sbjct: 61 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFENLADHLADP 120
Query: 265 FANN 268
NN
Sbjct: 121 VNNN 124
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 102/202 (50%), Gaps = 23/202 (11%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAA 129
R+ + G L S+ P +L ++PG+YG+DP L K+P +WAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 130 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 189
G + E W+ ++G +FG +P +L + E V + AE
Sbjct: 91 GSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 142
Query: 190 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q T
Sbjct: 143 GQRG----DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAAT 198
Query: 250 GEGPVENLAKHLSDPFANNLLT 271
G+GP+ L +HL++P+ N T
Sbjct: 199 GKGPIAALGEHLANPWGANFAT 220
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 102/202 (50%), Gaps = 31/202 (15%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGA 128
+R+++ P GL+ + P +L G +PGD+GYDP GL+K P ++ WAMLG
Sbjct: 37 ERKLWAP-GLV---KAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGV 92
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 188
AG + PE + W + G Y G +P + E +
Sbjct: 93 AGMLAPELVG--------QGTWLSAQDWAVTGGKPTYLGNELPYGFGTVLAVEFFCL--- 141
Query: 189 EYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
+ I+ GL+ + +++PGG FDPLG KD + KVKE++NGRLAM A +G + Q
Sbjct: 142 SWVEISRGLEKDPMKRIYPGGAFDPLGFGKD----EVNKVKELRNGRLAMVAFVGMWCQG 197
Query: 247 YVTGEGPVENLAKHLSDPFANN 268
G GPV NL HL+DP NN
Sbjct: 198 IHVGGGPVSNLMDHLADPLHNN 219
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 115/242 (47%), Gaps = 52/242 (21%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K KA+ PA S+ A+ V A P+R I+ P S PE+L G +PGD+G+DP
Sbjct: 27 KNKASVPAVSRSAAL--VRAVAAD---PERPIWFPG-----STPPEWLDGSLPGDFGFDP 76
Query: 111 FGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
GLS PD +WAMLGAAG IPE K G P W+ G
Sbjct: 77 LGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAG------ 128
Query: 161 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLH 204
YF + +V E++L+G AE R N L D +
Sbjct: 129 -EQEYFTDKTTLFVV-----ELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGY 182
Query: 205 PGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
PGG FDPLG P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+
Sbjct: 183 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 242
Query: 263 DP 264
DP
Sbjct: 243 DP 244
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 113/213 (53%), Gaps = 43/213 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFG 141
YL G +PGD+G+DP GLS +P + ++AMLGA G I PE K G
Sbjct: 66 YLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 125
Query: 142 ANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 196
PE WF+TG + G T +Y+ P L + E+ L+G AE+ R+ +
Sbjct: 126 L-IPPETALPWFRTGVIPPAG-TYSYWAD--PYTLF---VFEMALMGFAEHRRLQDWAKP 178
Query: 197 --------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
L E L +PGGP F+PLG KD LK+KE+KNGRLAM A+L
Sbjct: 179 GSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 238
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
G+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 239 GYFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 103/215 (47%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR I+ P S PE+L G +PGD+G+DP GLS PD +WAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGEQ-------EYFTDKTTLFVV-----ELILIGW 150
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 151 AEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 92/162 (56%), Gaps = 19/162 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQ 163
Query: 182 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQF 221
+VL+G E YR+ G E D+L+PGG FDPLGLA+DP+ F
Sbjct: 164 VVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 103/215 (47%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR I+ P S PE+L G +PGD+G+DP GLS PD +WAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLG 104
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGEQ-------EYFTDKTTLFVV-----ELILIGW 150
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 151 AEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 103/215 (47%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR I+ P S PE+L G +PGD+G+DP GLS PD +WAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGEQ-------EYFTDKTTLFVV-----ELILIGW 150
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 151 AEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 133/281 (47%), Gaps = 55/281 (19%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
++ VR + + PS VA + +A + VS V E L GPDR ++
Sbjct: 11 CSIQPRVRAALRAPTLPSQNAAVARMAGHRAG----ATKGGVSAVCEPL----GPDRPLW 62
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFII 133
P S P +L G +PGD+G+DP GL P+ S+WAML AAG ++
Sbjct: 63 FPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAGILV 117
Query: 134 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 193
PE K+G F +D +YF P L ++++ L+G AE R
Sbjct: 118 PEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTLF---VSQMALMGWAEGRRW 163
Query: 194 TNGLD-----LEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLA 235
+ L+ +E +L +PGG FD + P+ +L+ KEIKNGRLA
Sbjct: 164 ADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLA 223
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
M A +GF+ QA TGEGP++NL HL+DP N+ + + +
Sbjct: 224 MLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 112/213 (52%), Gaps = 43/213 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFG 141
YL G +PGD+G+DP GLS +P + ++AMLGA G I PE K G
Sbjct: 66 YLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 125
Query: 142 ANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 196
PE WF+TG + G T +Y+ P L + E+ L+G AE+ R +
Sbjct: 126 L-IPPETALPWFRTGVIPPAG-TYSYWAD--PYTLF---VFEMALMGFAEHRRFQDWAKP 178
Query: 197 --------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
L E L +PGGP F+PLG KD LK+KE+KNGRLAM A+L
Sbjct: 179 GSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 238
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
G+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 239 GYFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 100/202 (49%), Gaps = 23/202 (11%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAA 129
R+ + G L S+ P +L ++PG+YG+DP L K P +WAMLG A
Sbjct: 31 RVVMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVA 90
Query: 130 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 189
G + E W+ + G +FG +P +L + E V + AE
Sbjct: 91 GALAVELLGY--------GNWYDAPLWAVTGGKATWFGIEVPFDLNTLLAFEFVAMAAAE 142
Query: 190 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q T
Sbjct: 143 GQRN----DAGGVIYPGGAFDPLGFAKDSSKAGELKLKEIKNGRLAMVAFLGFIAQHAAT 198
Query: 250 GEGPVENLAKHLSDPFANNLLT 271
G+GP+ L +HL++P+ N T
Sbjct: 199 GKGPLAALGEHLANPWGANFAT 220
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 110/214 (51%), Gaps = 36/214 (16%)
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------------FSKWAMLGAAG 130
G+ D+S YL G +PGDYG+DP GLS P+ +WAMLG AG
Sbjct: 69 GVSDQSL--SYLDGTLPGDYGFDPLGLSD-PEGAGGFINPGWLAYAEVIHGRWAMLGVAG 125
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG-AE 189
PE F + VWFK G + G + +++ + V + V + E
Sbjct: 126 ATAPETMKGFIPDS-TAVVWFKNGIIPAQG-SYDFWAPPTALFWVMVCMMNFVEINRLTE 183
Query: 190 Y----YRITNGL-DLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
Y +R L LE + +PGG F+P+G+ K+ +KVKEIKNGRLAM
Sbjct: 184 YANPGFRTKQSLAGLEKGMGGTGNPAYPGGSFNPMGMGKN--DMDAMKVKEIKNGRLAMM 241
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
A G +QA +TGEGPV+NL H++DPFA+NLLT
Sbjct: 242 AFFGIMVQAIITGEGPVKNLTDHVTDPFAHNLLT 275
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 112/212 (52%), Gaps = 42/212 (19%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD+G+DP GL + P+ S++AMLG G ++ + G N
Sbjct: 68 PTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNS 127
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 198
P +WF+ GA+ K N V+ +++L+G AE R + +
Sbjct: 128 IP--IWFEAGAV-----------KYEFANTGTLVVVQLLLMGYAETRRYMDFVSPGSQAK 174
Query: 199 ------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 245
LE L +PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+Q
Sbjct: 175 EGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFVQ 234
Query: 246 AYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
A VT GP++NL +HLS+P+ ++ +++ ++
Sbjct: 235 ASVTHVGPIDNLVEHLSNPWHKTIIQILASSS 266
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 120/244 (49%), Gaps = 45/244 (18%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+ VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 KAAKSGVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPE 93
Query: 119 DF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
++WAML AG ++PE F G W+ D + YF
Sbjct: 94 TLKWFAQAELMHARWAMLAVAGILLPEWFESLG--LIQNFSWY-------DAGSREYFAD 144
Query: 169 NIPINLVFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGL 214
P L+ A +A + V G + + N +D++ KL +PGG FDP+
Sbjct: 145 --PTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMW 202
Query: 215 AK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
+ P+ +L+ KEIKNGRLAM A +G + QA TG+GP+ENLA H++DP N+ +
Sbjct: 203 GRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF 262
Query: 274 SGNA 277
S +
Sbjct: 263 SSGS 266
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 99/190 (52%), Gaps = 20/190 (10%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFG 141
SE EYL ++PG++ +DP L K+ +WAMLGAAG + E
Sbjct: 41 SEPKEYLN-DLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGL-- 97
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 201
W+ + G+ +FG +P ++ + E+V + AE R N D+E
Sbjct: 98 ------GNWYDAPLWAVTGDKPTWFGIEVPFDIATILGVEVVAMAVAEGLRNDN-QDMEK 150
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 261
+L+PGG FDPLG +KDP F K+KE+KNGRLAM A LGF Q TG+ +E L HL
Sbjct: 151 RLYPGGAFDPLGFSKDPKSFEDKKLKELKNGRLAMVACLGFAGQHAATGKPILEALGDHL 210
Query: 262 SDPFANNLLT 271
S PF NN T
Sbjct: 211 SSPFFNNFAT 220
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 120/244 (49%), Gaps = 45/244 (18%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+ VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 KAAKSGVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPE 93
Query: 119 DF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 168
++WAML AG ++PE F G W+ D + YF
Sbjct: 94 TLKWFAQAELMHARWAMLAVAGILLPEWFESLG--LIQNFSWY-------DAGSREYFAD 144
Query: 169 NIPINLVFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGL 214
P L+ A +A + V G + + N +D++ KL +PGG FDP+
Sbjct: 145 --PTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMW 202
Query: 215 AK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
+ P+ +L+ KEIKNGRLAM A +G + QA TG+GP+ENLA H++DP N+ +
Sbjct: 203 GRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF 262
Query: 274 SGNA 277
S +
Sbjct: 263 SSGS 266
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 111/207 (53%), Gaps = 41/207 (19%)
Query: 102 VPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGP 146
+PGDYG+DP GLS +P + ++AMLGAAG I PE K G
Sbjct: 15 LPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAE 74
Query: 147 EAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--------- 196
A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 75 TALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSMGKQ 128
Query: 197 --LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q
Sbjct: 129 YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQG 188
Query: 247 YVTGEGPVENLAKHLSDPFANNLLTVI 273
VTG GP +NL HL+DP NN+LT +
Sbjct: 189 LVTGVGPYQNLLDHLADPVNNNVLTSL 215
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 122/242 (50%), Gaps = 51/242 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAG 130
PDR ++ P ++ PEYL G + GDYG+DPFGL + + D + AG
Sbjct: 47 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAG 101
Query: 131 FII-----------------PEAF--NKFG------------ANCGPEAVWFKTGALLLD 159
II E F +F A G +V + TG D
Sbjct: 102 DIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQD 161
Query: 160 GNTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPL 212
+ +Y G+ +P ++ ++ E++++G E+ R LD E +L+PGG F DPL
Sbjct: 162 AGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQRNAE-LDPEKRLYPGGNFFDPL 220
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
GLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N A HLSDP ++
Sbjct: 221 GLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSDPLHTTIIDT 280
Query: 273 IS 274
+S
Sbjct: 281 LS 282
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 130/272 (47%), Gaps = 67/272 (24%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F KKAAP SKP A P+ WY ++ PEYL G + GDYG+
Sbjct: 35 FRTKKAAPKKFSKPSADRPL------WY-------------PGAKAPEYLDGSLVGDYGF 75
Query: 109 DPFGLSKKPDDFSKWAM--------LGAAGFII-----------------PEAF--NKFG 141
DPFGL KP ++ ++ + AG II E F +F
Sbjct: 76 DPFGLG-KPVEYLQYDLDSLDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVFGLQRFR 134
Query: 142 ------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNIPINLVFAVIAEIV 183
A G +V + TG D + +Y G+ +P ++ + E++
Sbjct: 135 ECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVL 194
Query: 184 LVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
L+G E+ R LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM LGF
Sbjct: 195 LIGYIEFQRNAE-LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVGFLGF 253
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
+QA VTG+GP+ N A HLSDP ++ ++
Sbjct: 254 AVQAAVTGKGPLNNWATHLSDPLHTTIIDTLT 285
>gi|356532722|ref|XP_003534920.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 125
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 71/90 (78%), Gaps = 2/90 (2%)
Query: 181 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
+++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 24 QVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFS 83
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 84 MFGFFVQAIVTGKGPLENLADHLADPVNNN 113
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 122/242 (50%), Gaps = 51/242 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAG 130
PDR ++ P ++ PEYL G + GDYG+DPFGL + + D + AG
Sbjct: 47 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAG 101
Query: 131 FII-----------------PEAF--NKFG------------ANCGPEAVWFKTGALLLD 159
II E F +F A G +V + TG D
Sbjct: 102 DIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQD 161
Query: 160 GNTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPL 212
+ +Y G+ +P ++ ++ E++++G E+ R LD E +L+PGG F DPL
Sbjct: 162 AGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQRNAE-LDPEKRLYPGGNFFDPL 220
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
GLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N A HLSDP ++
Sbjct: 221 GLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSDPLHTTIIDT 280
Query: 273 IS 274
+S
Sbjct: 281 LS 282
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 115/253 (45%), Gaps = 70/253 (27%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP------------------- 117
G +R ++ P ++ P+YL G + GDYG+DP GL K P
Sbjct: 61 GANRPLWFPG-----AKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMP 115
Query: 118 --------DDFS---------------------------KWAMLGAAGFIIPEAFNKFGA 142
+D S +WAML G I E F
Sbjct: 116 GELLGERVEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTG--- 172
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202
W G + LD +YFG ++P + V E++++G E+ R T LD E +
Sbjct: 173 -----VTWQDAGKVELDQGP-SYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKR 225
Query: 203 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 261
L+PGG FDPLGLA DP++ +LK+ EIK+ RLAM A GF +QA TG+GP++N HL
Sbjct: 226 LYPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLDNWVTHL 285
Query: 262 SDPFANNLLTVIS 274
SDP ++ S
Sbjct: 286 SDPLHTTIIDTFS 298
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 109/238 (45%), Gaps = 65/238 (27%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKP---------------------------DDFS--- 121
++ P+YL G + GDYG+DP GL K P +D S
Sbjct: 71 AKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDLSTIR 130
Query: 122 ------------------------KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 157
+WAML G I E F W G +
Sbjct: 131 ATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTG--------VTWQDAGKVE 182
Query: 158 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAK 216
LD +YFG ++P + V E++++G E+ R T LD E +L+PGG FDPLGLA
Sbjct: 183 LDQGP-SYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKRLYPGGSYFDPLGLAA 240
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
DP++ +LK+ EIK+ RLAM A GF +QA TG+GP++N HLSDP ++ S
Sbjct: 241 DPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLDNWVTHLSDPLHTTIIDTFS 298
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 101/192 (52%), Gaps = 23/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP GL + P++ ++WAML G +IPEA N
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGY--GNW 111
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGL-DLEDK 202
W T G Y G +P NL + E + + AE R NG D E +
Sbjct: 112 VSAQKWAAT-----PGGQATYLGNPVPWGNLPVILAIEFLAIAFAESQR--NGEPDPEKR 164
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 261
+PGG FDPLG +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL HL
Sbjct: 165 KYPGGAFDPLGFSKGAN-LEELKLKEIKNGRLALVAFLGFAVQAIAYPGTGPLENLKTHL 223
Query: 262 SDPFANNLLTVI 273
+DP+ N + VI
Sbjct: 224 ADPWHNTIAHVI 235
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 110/211 (52%), Gaps = 41/211 (19%)
Query: 96 EYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKF 140
YL G +PGDYG+DP GLS P+ ++AMLGAAG I PE F K
Sbjct: 70 SYLDGSLPGDYGFDPLGLSDPQGAGGFIDPNWLRYAEIINGRFAMLGAAGAIAPEIFGKI 129
Query: 141 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 196
G A+ WF+TG + G +Y+ P L + E+ L+G AE+ R +
Sbjct: 130 GLIPQETAIPWFQTGVIPPLGQ-YSYWAD--PYTLF---VLEMALMGFAEHRRAQDYYKP 183
Query: 197 --------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 240
L E D +PGGP F+ LG +D LKVKE+KNGRLAM A+L
Sbjct: 184 GSMGKQYFLGFEKVLGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVL 243
Query: 241 GFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
G+F+QA TG GP +NL HLSDP NN+LT
Sbjct: 244 GYFIQAIFTGVGPFQNLLDHLSDPANNNVLT 274
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 97/190 (51%), Gaps = 22/190 (11%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFG 141
S+ P +L ++PG+YG+DP L K P +WAMLG AG + E
Sbjct: 7 SDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLGY-- 64
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 201
W+ ++G +FG ++P +L + E V + AE R D
Sbjct: 65 ------GNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQRG----DAGG 114
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 261
++PGG FDPLG AKD + LK+KE+KNGRLAM A LGF Q TG+GP+ L +HL
Sbjct: 115 VVYPGGAFDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQHAATGKGPIAALGEHL 174
Query: 262 SDPFANNLLT 271
S+P+ N T
Sbjct: 175 SNPWGANFAT 184
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 132/284 (46%), Gaps = 56/284 (19%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVA---VSPVNEELAKWYGPDR 80
LN +S+ +S P + K +L K + K + A VS V E L PDR
Sbjct: 3 LNFASSSLSSLPTRTRDKPQK--SLLGKIEKCQAVKVRVNATKGVSSVCEPLP----PDR 56
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAG 130
++ P S PE+L G +PGD+G+DP GL P+ +WAML AAG
Sbjct: 57 PLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY 190
+IPE + G F D T YF P L + +++L+G E
Sbjct: 112 ILIPEWLERLG---------FIDNFNWFDAGTREYFAD--PTTLF---VVQLILMGWIEG 157
Query: 191 YRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 232
R + +D++ KL +PGG FDP + P+ ++ KEIKNG
Sbjct: 158 RRWADMIKPGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNG 217
Query: 233 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
RLAM A +GF+ QA TGEGP++NL H++DP N+ + + +
Sbjct: 218 RLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 132/284 (46%), Gaps = 56/284 (19%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVA---VSPVNEELAKWYGPDR 80
LN +S+ +S P + K +L K + K + A VS V E L PDR
Sbjct: 3 LNFASSSLSSLPTRTRDKPQK--SLLGKIEKCQAVKVRVNATKGVSSVCEPLP----PDR 56
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAG 130
++ P S PE+L G +PGD+G+DP GL P+ +WAML AAG
Sbjct: 57 PLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 131 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY 190
+IPE + G F D T YF P L + +++L+G E
Sbjct: 112 ILIPEWLERLG---------FIDNFNWFDAGTREYFAD--PTTLF---VVQLILMGWIEG 157
Query: 191 YRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 232
R + +D++ KL +PGG FDP + P+ ++ KEIKNG
Sbjct: 158 RRWADMIKPGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNG 217
Query: 233 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
RLAM A +GF+ QA TGEGP++NL H++DP N+ + + +
Sbjct: 218 RLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 101/192 (52%), Gaps = 23/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP GL + P++ ++WAML G +IPEA N
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEALGY--GNW 68
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNG-LDLEDK 202
W T G Y G +P NL + E + + E R NG D E +
Sbjct: 69 VSAQKWAAT-----PGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQR--NGESDPEKR 121
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 261
+PGGPFDPLG +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL HL
Sbjct: 122 KYPGGPFDPLGFSKGAN-LEELKLKEIKNGRLALVAFLGFVVQAVAYPGTGPLENLKTHL 180
Query: 262 SDPFANNLLTVI 273
+DP+ N + V+
Sbjct: 181 ADPWHNTIAHVL 192
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 127/292 (43%), Gaps = 62/292 (21%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS ASST AA V+ + +S S T K L ++ +
Sbjct: 1 MASACASSTIAA-------------VAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYST 47
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
P A S +A PDR ++ P S P +L G +PGD+G+DP GL+ P+
Sbjct: 48 TPTARSATTVCVAA--DPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESL 100
Query: 121 ----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 170
+WAMLGAAG IPE K G P W+ G +T F
Sbjct: 101 RWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF---- 154
Query: 171 PINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLG 213
I E+VL+G AE R N L D +PGG FDPLG
Sbjct: 155 --------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206
Query: 214 LAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 207 WGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 132/274 (48%), Gaps = 49/274 (17%)
Query: 28 SAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ V T A A F+P A S+ A P+K ++ +++ P+ P ++ +
Sbjct: 2 ATVSTQASAA----VFRPCAYKSRFLAGAPSKLNRELSIKPMASS-----SPSFKVEAKK 52
Query: 87 G-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPE 135
G L P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE
Sbjct: 53 GEWLPGLPSPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPE 112
Query: 136 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 195
F K G P+ W+ D YF + + ++ ++ V + + I N
Sbjct: 113 VFTKIGIINAPQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKN 161
Query: 196 -GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
G +D + +PGG F+PL A + K KE+ NGRLAM A LGF
Sbjct: 162 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTIEA----KEKELANGRLAMLAFLGF 217
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
+Q VTG+GP ENL +H+SDP+ N ++ SGN
Sbjct: 218 VIQHNVTGKGPFENLLQHISDPWHNTIVQTFSGN 251
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 81/120 (67%), Gaps = 5/120 (4%)
Query: 147 EAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--D 201
EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G E D
Sbjct: 5 EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLD 64
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 261
L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL H
Sbjct: 65 PLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHF 124
>gi|115769|sp|P12327.1|CB21_EUGGR RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|829262|emb|CAA29821.1| chlorophyll a/b protein (128 AA) [Euglena gracilis]
Length = 127
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 175 VFAVIA-EIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 227
+ A++A +++L+G E YR N G DL D+L+PGGPFDPLGLA DPD F LKVK
Sbjct: 11 LLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVK 69
Query: 228 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 282
EIKNGRLAM MLGF+ QA VTGEGPVEN HL DP A+N LT + + APT
Sbjct: 70 EIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALV--TQFAPT 122
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 132/281 (46%), Gaps = 55/281 (19%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
++ VR + + PS VA + +A + VS V E L GPDR ++
Sbjct: 11 CSIQPRVRAALRAPTLPSQNAAVARMAGHRAG----ATKGGVSAVCEPL----GPDRPLW 62
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFII 133
P S P +L G +PGD+G+DP GL P+ S+WAML AG ++
Sbjct: 63 FPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILV 117
Query: 134 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 193
PE K+G F +D +YF P L ++++ L+G AE R
Sbjct: 118 PEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTLF---VSQMALMGWAEGRRW 163
Query: 194 TNGLD-----LEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLA 235
+ L+ +E +L +PGG FD + P+ +L+ KEIKNGRLA
Sbjct: 164 ADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLA 223
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
M A +GF+ QA TGEGP++NL HL+DP N+ + + +
Sbjct: 224 MLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 128/293 (43%), Gaps = 62/293 (21%)
Query: 1 MASLAASSTPAA-SIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK 59
MAS+ ASS AA SI + + + +T S ++F KK P
Sbjct: 1 MASVCASSAIAAVSISSSRQV-------LSQKTGFLVGSTKASFLSGKKLRLKKYTAPTA 53
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
++ V V + PDR ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 54 ARSVTVCVAAD-------PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPET 101
Query: 120 F----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 169
+WAMLGAAG IPE K G P W+ G L +T F
Sbjct: 102 LRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF--- 156
Query: 170 IPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPL 212
I E+ +G AE R N L D +PGG FDPL
Sbjct: 157 ---------IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 207
Query: 213 GLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
G P++ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 208 GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 260
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 106/227 (46%), Gaps = 47/227 (20%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
P+R I+ P S P +L G +PGD+G+DP+GL P+ +WAMLG
Sbjct: 51 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 105
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 106 AAGIFIPELLTKIGILNTPS--WYTAGEQTYFADTTTLF------------IVELILIGW 151
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 152 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEI 211
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
KNGRLAM A++G + QA TG GP++NL HL+DP + + N
Sbjct: 212 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAFTPN 258
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 110/238 (46%), Gaps = 53/238 (22%)
Query: 55 APPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
AP A ++ VS + P+R ++ P S P +L G +PGD+G+DP GL
Sbjct: 48 APAAGTRSFTVSAAAAD------PNRPLWFP-----GSTPPPWLDGSLPGDFGFDPLGLG 96
Query: 115 KKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 164
P+ +WAMLGAAG IPE K G P W+ G L
Sbjct: 97 SDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEL-------E 147
Query: 165 YFGKNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG- 207
YF + I E++ +G AE R N L D +PGG
Sbjct: 148 YFTDKTTL-----FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 202
Query: 208 PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
FDPLG PD+ L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 203 WFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADP 260
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 112/236 (47%), Gaps = 51/236 (21%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD
Sbjct: 54 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 104
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
S+WAML G IIPE + G F D + YF + +
Sbjct: 105 QAELIHSRWAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-- 153
Query: 175 VFAVIAEIVLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK- 216
+A++VL+G AE R + +D+E K +PGG FD + +
Sbjct: 154 ---FVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRG 210
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
P+ +L+ KEIKNGRLAM A LGF QA T + P+ENL HL+DP N+ +V
Sbjct: 211 SPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSV 266
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 105/210 (50%), Gaps = 44/210 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G + GD+G+DP GL + P D S++AM G AG + + G
Sbjct: 12 PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLLRASGRTD 71
Query: 145 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD----- 198
P VWF+ GA D +T F + +++L+G E R + +
Sbjct: 72 IP--VWFEAGATKFDFADTTTLF------------VVQLILMGFVETKRWMDIVKPGSQA 117
Query: 199 LEDKL-------------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
ED +PGGP F+PLG A DP + L+ KEIKNGRLAM AM+GF +
Sbjct: 118 AEDSFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRLAMVAMVGFMV 177
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
QAYVT GP+ENL HLSDP N ++ I+
Sbjct: 178 QAYVTKTGPIENLLTHLSDPVHNTIIQRIA 207
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 111/210 (52%), Gaps = 43/210 (20%)
Query: 101 EVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCG 145
+PGDYG+DP GLS +P + ++AMLGA G I PE F K G
Sbjct: 5 RLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGI-IP 63
Query: 146 PEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------- 196
PE WFKTG + G T NY+ + + + + L+G AE+ R+ +
Sbjct: 64 PETALPWFKTGVIPPAG-TYNYWADSYTL-----FVFNMALMGFAEHRRLQDWYNPGSMG 117
Query: 197 ----LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A+LG+F+
Sbjct: 118 KQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFI 177
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
Q VTG GP +NL HL+DP NN+LT +
Sbjct: 178 QGLVTGVGPFQNLLDHLADPVNNNVLTSLK 207
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 118/240 (49%), Gaps = 51/240 (21%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L GPDR ++ P + P +L G +PGD+G+DP GL +P+
Sbjct: 56 VSAVCEPL----GPDRPVWFPG-----TSPPPWLDGSLPGDFGFDPLGLGSEPETLRWFA 106
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
S+WAML AG +IPE K+G E W+ G YF P L
Sbjct: 107 QAELMHSRWAMLAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWTL 155
Query: 175 VFAVIAEIVLVGGAEYYRITNGL-----DLEDKL-----------HPGG-PFDPLGLAK- 216
IA++ L+G AE R + L D+E + +PGG FD +
Sbjct: 156 F---IAQMALMGWAEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRG 212
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
P+ +L+ KEIKNGRLAM A +GF+ QA TG+GPV+NL HL+DP N+ + + +
Sbjct: 213 SPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCNIFSAFTSH 272
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 104/215 (48%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
P+R I+ P S P +L G +PGD+G+DP+GL P+ +WAMLG
Sbjct: 53 PNRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 107
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 108 AAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF------------IIELILIGW 153
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R +N L D +PGG FDPLG P++ L+ KEI
Sbjct: 154 AEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 213
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 214 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 248
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 112/240 (46%), Gaps = 51/240 (21%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 81 VSTVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFA 131
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
S+WAML AG +IPE G F D YF P L
Sbjct: 132 QAELMHSRWAMLAVAGILIPEWLESLG---------FIENYNWFDAGAREYFAD--PTTL 180
Query: 175 VFAVIAEIVLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK- 216
I ++VL+G E R + +D+E L +PGG FDPL +
Sbjct: 181 F---IVQLVLMGWVEGRRWADMIKPGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGRG 237
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
P+ +L+ KEIKNGRLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 238 SPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIFSAFTSQ 297
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 103/215 (47%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
P+R I+ P S P +L G +PGD+G+DP+GL P+ +WAMLG
Sbjct: 48 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 102
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 103 AAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELILIGW 148
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGTGSPEKLKELRTKEI 208
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 209 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 243
>gi|305377030|dbj|BAJ15878.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 125
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 5/111 (4%)
Query: 163 LNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKD 217
L+Y G I + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA D
Sbjct: 3 LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 62
Query: 218 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
P+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA L+DP NN
Sbjct: 63 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADGLADPVNNN 113
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 101/193 (52%), Gaps = 24/193 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G P P GL+ P++F +WAML G ++PEA
Sbjct: 31 PAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 85
Query: 145 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 201
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 86 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 140
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 260
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA H
Sbjct: 141 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 200
Query: 261 LSDPFANNLLTVI 273
L+DP+ NN+ ++
Sbjct: 201 LADPWHNNIGDIV 213
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 132/274 (48%), Gaps = 49/274 (17%)
Query: 28 SAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ V T A A F+P A S+ A P+K ++ +++ P+ P ++ +
Sbjct: 2 ATVSTQASAA----VFRPCAYKSRFLAGAPSKLNRELSIKPMASS-----SPSFKVEAKK 52
Query: 87 G-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPE 135
G L P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE
Sbjct: 53 GEWLPGLPSPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPE 112
Query: 136 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 195
F K G P+ W+ D YF + + ++ ++ V + + I N
Sbjct: 113 VFTKIGIINAPQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKN 161
Query: 196 -GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
G +D + +PGG F+PL A + K KE+ NGRLAM A LGF
Sbjct: 162 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTIEA----KEKELANGRLAMLAFLGF 217
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
+Q VTG+GP +NL +H+SDP+ N ++ SGN
Sbjct: 218 VIQHNVTGKGPFDNLLQHISDPWHNTIVQTFSGN 251
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 107/209 (51%), Gaps = 43/209 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G++ GDYG+DP GL + P+ S++AMLG AG + + G
Sbjct: 56 PPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE--------------- 189
P VW++ GA+ D + ++ + +L+G AE
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYVDYVSPGSQAK 162
Query: 190 ----YYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
++ I L+ + +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVI 273
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 113/240 (47%), Gaps = 51/240 (21%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD
Sbjct: 54 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 104
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
S+WAML G IIPE + G F D + YF + +
Sbjct: 105 QAELIHSRWAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-- 153
Query: 175 VFAVIAEIVLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK- 216
+A++VL+G AE R + +D+E K +PGG FD + +
Sbjct: 154 ---FVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRG 210
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
P+ +L+ KEIKNGRLAM A LGF QA T + P+ENL HL+DP N+ + + +
Sbjct: 211 SPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 113/240 (47%), Gaps = 51/240 (21%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD
Sbjct: 54 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 104
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
S+WAML G IIPE + G F D + YF + +
Sbjct: 105 QAELIHSRWAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-- 153
Query: 175 VFAVIAEIVLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK- 216
+A++VL+G AE R + +D+E K +PGG FD + +
Sbjct: 154 ---FVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRG 210
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
P+ +L+ KEIKNGRLAM A LGF QA T + P+ENL HL+DP N+ + + +
Sbjct: 211 SPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 137/282 (48%), Gaps = 50/282 (17%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
VS+ +S+ +N +T++ ++L K + PAKS+ + S R +
Sbjct: 10 FRVSALKDSSSIFTNNINTYQTLSL--NKVTSLPAKSRGIFHSHGRRLCTVVRAQQRPTW 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFII 133
LP GL + P YL G + GD+G+DP GL + P+ S++AM G AG +
Sbjct: 68 LP-GL----DPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILF 122
Query: 134 PEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 192
+ G + P VW++ GA NT F I +++L+G E R
Sbjct: 123 TDLLRTTGLSNLP--VWYEAGATKFQFANTTTLF------------IVQMLLMGFVETKR 168
Query: 193 ITNG-----------LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRL 234
+ LE L +PGGP +PLG+AKD K+KEIKNGRL
Sbjct: 169 YMDFKNPGSQGEASFFGLEAALEGLEPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRL 228
Query: 235 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
AM A+LG F+QA VT GP+ENL +HLSDP+ ++ ++S +
Sbjct: 229 AMVAILGIFVQASVTHVGPLENLVEHLSDPWHTTIIQILSAS 270
>gi|1165248|gb|AAA85589.1| chlorophyll a/b binding protein of PS II, partial [Picea abies]
Length = 131
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 180 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
+++L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF
Sbjct: 29 CQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMF 88
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ NLA HL+DP NN
Sbjct: 89 SMFGFFVQAIVTGKGPLXNLADHLADPVNNN 119
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 112/235 (47%), Gaps = 45/235 (19%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 45 VSAVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFA 95
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
S+WAML G ++PE + G + D T YF P L
Sbjct: 96 QAELMHSRWAMLAVFGILVPELLERIG---------YIENFSWYDAGTREYFVD--PTTL 144
Query: 175 VFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPD 219
+ + V G + I N +D+E K+ +PGG FDP+ + P+
Sbjct: 145 FVVQMGLMGWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPE 204
Query: 220 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
+L+ KEIKNGRLAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 205 PVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 123/243 (50%), Gaps = 53/243 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAM--------LGAA 129
PDR ++ P ++ PEYL G + GDYG+DPFGL KP ++ ++ + A
Sbjct: 49 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLG-KPAEYLQFELDSLDQNLAKNLA 102
Query: 130 GFII-----------------PEAF--NKFG------------ANCGPEAVWFKTGALLL 158
G II E F +F A G +V + TG
Sbjct: 103 GDIIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQ 162
Query: 159 DGNTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DP 211
D + +Y G+ +P ++ + E V++G E+ R LD E +L+PGG F DP
Sbjct: 163 DAGKVELVEGSSYLGQPLPFSITALIWIEAVIIGYIEFQRNAE-LDPEKRLYPGGQFFDP 221
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
LGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N A HLSDP ++
Sbjct: 222 LGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSDPLHTTIID 281
Query: 272 VIS 274
+S
Sbjct: 282 NLS 284
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 103/214 (48%), Gaps = 47/214 (21%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGA 128
DR I+ P S P +L G +PGD+G+DP+GL P+ +WAMLGA
Sbjct: 64 DRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGA 118
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 188
AG IPE K G P W+ G +T F I E++L+G A
Sbjct: 119 AGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF------------IIELILIGWA 164
Query: 189 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIK 230
E R +N L D +PGG FDPLG P++ L+ KEIK
Sbjct: 165 EGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIK 224
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
NGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 225 NGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 258
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 93/157 (59%), Gaps = 18/157 (11%)
Query: 105 DYGYDPFGLSKKPDDFSK----------WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 154
DYG+D GLS P+ F++ WAMLGA G I PE K+ E VWFK G
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 155 ALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP 208
A + L+Y G + + AV+ ++VL+G E +RI NGLD + L+PGG
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NGLDGVGEGNDLYPGGQ 119
Query: 209 -FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 YFDPLGLADDPVPFAELKVKEIKNGRLAMFSMFGFFV 156
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 101/215 (46%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P S P +L G +PGD+G+DP GL P+ S+WAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F I E+V +G
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVFIGW 162
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEI 229
AE R N L D +PGG FDPLG + P + L+ KEI
Sbjct: 163 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 102/215 (47%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P S P +L G +PGD+G+DP GL+ P+ +WAMLG
Sbjct: 64 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLG 118
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G L +T F I E++ +G
Sbjct: 119 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELIFIGW 164
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 165 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 224
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 225 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 43/209 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GDYG+DP GL + P+ S++AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 198
P VW++ GA+ D + ++ + +L+G AE R + +
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 162
Query: 199 -------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
LE L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVI 273
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 43/209 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GDYG+DP GL + P+ S++AMLG AG + + G
Sbjct: 48 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 107
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 198
P VW++ GA+ D + ++ + +L+G AE R + +
Sbjct: 108 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 154
Query: 199 -------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
LE L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 155 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 214
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVI 273
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 215 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 243
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 103/215 (47%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
P+R I+ P S P +L G +PGD+G+DP+GL P+ +WAMLG
Sbjct: 46 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 100
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F + E++L+G
Sbjct: 101 AAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------VVELILIGW 146
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 147 AEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGNGSPEKLKELRTKEI 206
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 207 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 241
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 119/240 (49%), Gaps = 52/240 (21%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAMLGA------- 128
+ DR ++ P ++ PEYL G + GDYG+DPFGL KP ++ ++ G
Sbjct: 7 FSTDRPLWYP-----GAKAPEYLDGSLVGDYGFDPFGLG-KPAEYLQYDYDGLDQNLAKN 60
Query: 129 -AGFIIP----------------------EAFNKFGANCGPEAVWFKTGALLLDGNT--- 162
AG II + F + G A+ GAL ++G T
Sbjct: 61 LAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGIT 120
Query: 163 ------------LNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFD 210
+Y G+ +P ++ + E++++G E+ R LD E +L+PGG FD
Sbjct: 121 WQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE-LDTEKRLYPGGTFD 179
Query: 211 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 270
PLGLA DP++ +L++ EIK+ RLAM LGF +QA VTG+GP+ N HLSDP +L
Sbjct: 180 PLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTTIL 239
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 129/293 (44%), Gaps = 56/293 (19%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVAL-FSKKKAAPPAK 59
MAS AA ++S+ A ++ + + + GA+ S A+ + KAA P +
Sbjct: 1 MASGAAVVCASSSVTAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQTKAAMPRR 60
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+ V E W+ + P +L G +PGD+G+DP GL P+
Sbjct: 61 AAVTVSQAVQTERPLWFPGNTP-------------PPWLDGSLPGDFGFDPLGLGSDPET 107
Query: 120 F----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 169
+WAMLGAAG IPE K G P W+ G L YF
Sbjct: 108 LKWMVQAELVHCRWAMLGAAGIFIPELCTKLGILNTPS--WYTAG-------ELEYFTDK 158
Query: 170 IPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPL 212
+ +V E++ +G AE R N L D +PGG FDPL
Sbjct: 159 TTLFVV-----EMIFLGWAEGRRWADILEPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPL 213
Query: 213 GLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
G P++ L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 214 GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADP 266
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 100/215 (46%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P S P +L G +PGD+G+DP GLS P+ +WAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLG 116
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F I E++ +G
Sbjct: 117 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELIFIGW 162
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 163 AEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEI 222
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 103/219 (47%), Gaps = 48/219 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P S P +L G +PGD+G+DP GL P+ S+WAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F I E+V +G
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVFIGW 162
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEI 229
AE R N L D +PGG FDPLG + P + L+ KEI
Sbjct: 163 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENL-AKHLSDPFAN 267
KNGRLAM A++G + Q TG GP++NL A HL+DP A
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADPHAT 261
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 105/209 (50%), Gaps = 43/209 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GDYG+DP GL + P+ S++AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 198
P VW++ GA+ D ++ + +L+G AE R + +
Sbjct: 116 LP--VWYEAGAVKFDFACTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 162
Query: 199 -------LEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
LE L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVI 273
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 127/268 (47%), Gaps = 52/268 (19%)
Query: 39 NPSTFKPVALFSKKKAAPPAKSKPV--AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
+P KP A + P ++ VS V E L GPDR I+ P S P
Sbjct: 26 SPPHLKPGAAAASFTRTPQRRANATKGGVSTVCEPL----GPDRPIWFPG-----SSPPP 76
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANCGP 146
+L G +PGD+G+DP GL +P+ +WAML AAG ++P+ ++G
Sbjct: 77 WLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG----- 131
Query: 147 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL-----DLED 201
+ G D + YF P L ++++ L+G AE R + L D+E
Sbjct: 132 ---FIDAGFSWFDAGSREYFAD--PWTLF---VSQMALMGWAEGRRWADYLRPGCVDIEP 183
Query: 202 KL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
+ +PGG FD + P+ +L+ KEIKNGRLAM A +GF+ QA
Sbjct: 184 RFPNRRNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVY 243
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISGN 276
TG+GP++NL HL+DP N+ + + +
Sbjct: 244 TGQGPIDNLLAHLADPGHCNIFSAFTSH 271
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 102/192 (53%), Gaps = 23/192 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G PGD+G+DP GL + P++ ++WAML G +IPEA N
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGY--GNW 68
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNG-LDLEDK 202
W T G Y G +P + ++A E + + AE R NG D E +
Sbjct: 69 VSAQKWAAT-----PGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQR--NGESDPEKR 121
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 261
+PGG FDP+G +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL HL
Sbjct: 122 KYPGGAFDPMGFSKGAN-LEELKLKEIKNGRLALVAFLGFAIQAIAYPGTGPLENLKTHL 180
Query: 262 SDPFANNLLTVI 273
+DP+ N + ++
Sbjct: 181 ADPWHNTIANIL 192
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 43/209 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GDYG+DP GL + P+ S++AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE--------------- 189
P VW++ GA+ D + ++ + +L+G AE
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 162
Query: 190 ----YYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
++ I L+ + +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVI 273
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHXTIIQTL 251
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 127/268 (47%), Gaps = 52/268 (19%)
Query: 39 NPSTFKPVALFSKKKAAPPAKSKPV--AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
+P KP A + P ++ VS V E L GPDR I+ P S P
Sbjct: 26 SPPHLKPGAAAASFTRTPQRRANATKGGVSTVCEPL----GPDRPIWFPG-----SSPPP 76
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANCGP 146
+L G +PGD+G+DP GL +P+ +WAML AAG ++P+ ++G
Sbjct: 77 WLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG----- 131
Query: 147 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL-----DLED 201
+ G D + YF P L ++++ L+G AE R + L D+E
Sbjct: 132 ---FIDAGFSWFDAGSREYFAD--PWTLF---VSQMALMGWAEGRRWADYLRPGCVDIEP 183
Query: 202 KL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
+ +PGG FD + P+ +L+ KEIKNGRLAM A +GF+ QA
Sbjct: 184 RFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVY 243
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISGN 276
TG+GP++NL HL+DP N+ + + +
Sbjct: 244 TGQGPIDNLLAHLADPGHCNIFSAFTSH 271
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 108/214 (50%), Gaps = 33/214 (15%)
Query: 73 AKWYGPDRRIFLPEGLLDR----SEIPEYLTGEVPGDYGYDPFGLSKKPD---------D 119
A YG RR FLP+ LL + +P YLTGE+PGD G+DP + + D
Sbjct: 1313 ADLYGTTRRKFLPDSLLASLGPSTVVPAYLTGELPGDVGWDPLQMGAQRDLTKLRERELI 1372
Query: 120 FSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-----LDGNTLNYFGKNIP--- 171
+WAML A G + PE K G P + W+ T L G L Y G+ IP
Sbjct: 1373 HGRWAMLAAVGVLTPELTAKLGVFGAPGSHWWNTAINFPTEGGLAGAELTYLGETIPFGL 1432
Query: 172 -----INLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFAL-- 223
I+L +AE++ G E R GL D+++PGG FDPLG+ +D D+ L
Sbjct: 1433 FWLPIIHLPVFFVAEMLRTGKYEVERF-RGL---DRMYPGGSLFDPLGIGRDIDETELKV 1488
Query: 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
LK EI + RLAM A GF ++A + G GP++ L
Sbjct: 1489 LKTIEINHCRLAMTASFGFIVEAALWGAGPLDWL 1522
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 102/215 (47%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
P+R I+ P S PE+L G +PGD+G+DP GLS PD +WAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 103
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAGEQ-------EYFTDKTTLFVV-----ELILIGW 149
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 150 AEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 209
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRL M A++G + Q TG GP++NL HL+DP
Sbjct: 210 KNGRLTMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 100/215 (46%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P S P +L G +PGD+G+DP GLS P+ +WAMLG
Sbjct: 61 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLG 115
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F I E++ +G
Sbjct: 116 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELIFIGW 161
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 162 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEI 221
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 222 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 256
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 129/275 (46%), Gaps = 68/275 (24%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGP--DRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
SKKKAAP SK GP DR ++ P ++ PE+L G + GDYG
Sbjct: 37 SKKKAAPKKVSK---------------GPSTDRPLWYPG-----AKAPEWLDGSLVGDYG 76
Query: 108 YDPFGLSK-------KPDDFSKWAMLGAAGFII-----------------PEAF--NKFG 141
+DPFGL K + D + AG II E F +F
Sbjct: 77 FDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYSEVFGLQRFR 136
Query: 142 ------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNIPINLVFAVIAEIV 183
A G +V + TG D + +Y G+ +P ++ + E++
Sbjct: 137 ECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVL 196
Query: 184 LVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
++G E+ R LD E +L+PGG FDPLGLA DP++ A L++ EIK+ RLAM LGF
Sbjct: 197 VIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGF 255
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
+QA TG+GP+ N A HLSDP ++ S ++
Sbjct: 256 AVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 135/280 (48%), Gaps = 57/280 (20%)
Query: 28 SAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY-GPDRRIFLPE 86
S +RT + PS+ + S++ A PA P SP +A G R +LP
Sbjct: 13 SVLRTH----TAPSSRQLAGWSSRRTLAMPAHHAP---SPRARVVAVRAAGTQRPTWLP- 64
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEA 136
GL + P +L G +PGD+G+DP GL + P ++AM G AG + +
Sbjct: 65 GL----DPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTDL 120
Query: 137 FNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 195
G + P VWF+ GA + NT F +++L+G AE R +
Sbjct: 121 LRVSGNSDLP--VWFEAGAAKFEFANTTALF------------FVQLLLMGFAETKRYMD 166
Query: 196 G------------LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 236
+ LE L +PGGP F+PLGLAKD + K+KEIKNGRLAM
Sbjct: 167 FKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAM 226
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
AMLGF +QA VT GP++NL HLSDPF N++ S +
Sbjct: 227 VAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHAFSSS 266
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 43/266 (16%)
Query: 33 SAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEG-LLDR 91
S ++ + +P + + PAK +PV+ +P P R+ +G L
Sbjct: 3 SVTAQTSLAVIRPCSRSRFLTGSSPAKLRPVSRNPSASRAV----PAFRVSAKKGEWLPG 58
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFG 141
P+YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE F K G
Sbjct: 59 LASPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIG 118
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLE 200
P+ W+ D YF + + ++ ++ V + + I N G +
Sbjct: 119 IINAPQ--WY-------DAGKQEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQ 167
Query: 201 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
D + +PGG F+PL A + K KEI NGRLAM A LGF +Q +
Sbjct: 168 DPIFKSYRLPPNEVGYPGGIFNPLNFAPSLEA----KEKEIANGRLAMLAFLGFLIQHNL 223
Query: 249 TGEGPVENLAKHLSDPFANNLLTVIS 274
TG+GP +NL +HLSDP+ N ++ +S
Sbjct: 224 TGKGPFDNLLQHLSDPWHNTIIQTLS 249
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 103/215 (47%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
P+R I+ P S PE+L G +PGD+G+DP GLS P+ +WAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLG 103
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAGEQ-------EYFTDKTTLFVV-----ELILIGW 149
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 150 AEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 209
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 210 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|914283|gb|AAB34067.1| light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 130 aa]
Length = 130
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 70/93 (75%), Gaps = 7/93 (7%)
Query: 180 AEIVLVGGAEYYRI----TNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 235
++VL+G E YRI + GLD L+PGG FDPLGLA DPD FA LKVKE+KNGRLA
Sbjct: 29 CQVVLMGFVEGYRIAGDPSGGLD---PLYPGGAFDPLGLADDPDAFAELKVKELKNGRLA 85
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
MF+M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 86 MFSMFGFFVQAIVTGKGPIENLYDHLADPVNNN 118
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 110/246 (44%), Gaps = 49/246 (19%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
+ S KK + P A V +A PDR ++ P S P +L G +PGD+
Sbjct: 33 SFLSGKKLRLKKYTAPTAARSVTVCVAA--DPDRPLWFPG-----STPPPWLDGSLPGDF 85
Query: 107 GYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+DP GL P+ +WAMLGAAG IPE K G P W+ G L
Sbjct: 86 GFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEL 143
Query: 157 LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLE 200
+T F I E+ +G AE R N L
Sbjct: 144 EYFTDTTTLF------------IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGT 191
Query: 201 DKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 258
D +PGG FDPLG P++ L+ KEIKNGRLAM A++G + Q TG GP++NL
Sbjct: 192 DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251
Query: 259 KHLSDP 264
HL+DP
Sbjct: 252 AHLADP 257
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 121/238 (50%), Gaps = 53/238 (22%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKWAM--------LGAAG 130
DR ++ P ++ PE+L G + GDYG+DPFGL K P ++ ++ + AG
Sbjct: 49 DRPLWFP-----GAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYDLDSLDQNLAKNVAG 102
Query: 131 FIIPEAFNK--------------FG-----------------ANCGPEAVWFKTGALLLD 159
II F FG A G +V + TG D
Sbjct: 103 DIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQD 162
Query: 160 GNTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPL 212
+ +Y G+ +P ++ + E++++G E+ R LD E +L+PGG F DPL
Sbjct: 163 AGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGKFFDPL 221
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 270
GLA+DP++ A+L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP ++
Sbjct: 222 GLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 279
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 103/204 (50%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE F KFG
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIIN 122
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 171
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP ENL +HLSDP+ N ++ I G
Sbjct: 228 GPFENLLQHLSDPWHNTIINTIRG 251
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 108/242 (44%), Gaps = 54/242 (22%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K++AA +S V V E PDR ++ P S P +L G +PGD+G+DP
Sbjct: 40 KERAAIGGRSMGTTVCAVAE-------PDRPLWFPG-----STPPPWLDGTLPGDFGFDP 87
Query: 111 FGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 160
GL P+ +WAMLGAAG IPE K G P W+ G L
Sbjct: 88 LGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPS--WYSAGELEYFT 145
Query: 161 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLH 204
+T F I E+ +G AE R N L D +
Sbjct: 146 DTTTLF------------IVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 193
Query: 205 PGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
PGG FDPLG P + L+ KEIKNGRLAM A++G + Q T GP++NL HL+
Sbjct: 194 PGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAMLAVMGAWFQHIYTATGPIDNLFAHLA 253
Query: 263 DP 264
DP
Sbjct: 254 DP 255
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 101/215 (46%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P S P +L G +PGD+G+DP GL+ P+ +WAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLG 117
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G L +T F I E+ +G
Sbjct: 118 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELFFIGW 163
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 164 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 100/215 (46%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P S P +L G +PGD+G+DP GLS P+ +WAMLG
Sbjct: 61 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLG 115
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F I E++ +G
Sbjct: 116 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELIFIGW 161
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 162 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEI 221
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 222 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 256
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 112/218 (51%), Gaps = 35/218 (16%)
Query: 80 RRIFLPEGLLDRSEIPEYL----TGEVPGDYGYDPFGLSKKPDDFSKW-----------A 124
R+ +LP S+IP +L + G++G+DP GL K P +W A
Sbjct: 27 RQSWLPG-----SQIPAHLDTPAAQALAGNFGFDPLGLGKDPVAL-RWYQQAELIHCRTA 80
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI-- 182
M G AG +IP K GA PE W+ G + ++ N+ +G + + L E
Sbjct: 81 MAGVAGILIPGLLTKAGALNVPE--WYDAGKVAIE-NSFAPWGSLLAVQLFLCGFVEAKR 137
Query: 183 ---VLVGGAE-----YYRITNGLDLEDKL-HPGGPFDPLGLAKDPDQFALLKVKEIKNGR 233
+ G++ + L +L +PGGPFDPLGL+K+ D++A K+KE+KNGR
Sbjct: 138 WQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGPFDPLGLSKEADKWADWKLKEVKNGR 197
Query: 234 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
LAM A LGF Q Y TG GPV+NLA HL DP+ N T
Sbjct: 198 LAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWHVNYAT 235
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 111/222 (50%), Gaps = 43/222 (19%)
Query: 80 RRIFLPEGLLDRSEIPEYL----TGEVPGDYGYDPFGLSKKPDDFSKW----------AM 125
R+ +LP S+IP +L + G++G+DP GL K P + + AM
Sbjct: 21 RQSWLPG-----SQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAWYQQAELIHCRTAM 75
Query: 126 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 185
G AG +IP K GA PE W+ G + ++ N+ +G + + L E+
Sbjct: 76 TGVAGILIPGLLTKAGALNVPE--WYDAGKVAIE-NSFAPWGTLLAVQLFLCGFVEV--- 129
Query: 186 GGAEYYRI----TNG-----LDLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEI 229
+ I + G L E L +PGGPFDPLGL+K+ D++A K+KE+
Sbjct: 130 --KRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGPFDPLGLSKEADKWADWKLKEV 187
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
KNGRLAM A LGF Q Y TG GPV+NL HL DP+ N T
Sbjct: 188 KNGRLAMLAFLGFVAQKYATGAGPVDNLVAHLKDPWHVNYAT 229
>gi|77799163|gb|ABB03724.1| putative chloroplast chlorophyll A-B binding protein type II
[Sorghum bicolor]
Length = 113
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 70/90 (77%), Gaps = 2/90 (2%)
Query: 181 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 238
++VL+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+
Sbjct: 12 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFS 71
Query: 239 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 72 MFGFFVQAIVTGKGPIENLFDHVADPVANN 101
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 24/187 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GD +DP LS + +WAML G +PE ++ GA
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 145 GPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYRITNGLDL 199
E +W+K G +L+G +NY G + I ++ + VL+GG EY R L
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLGIEGFHIAGASGIIGIAFCQAVLMGGPEYARYVGIESL 344
Query: 200 E--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250
E D +PGG PFDP L+ D ++ L+V E+K+GRLAM AMLG F QA+VT
Sbjct: 345 EPVGVYLPGDTNYPGGGPFDPFNLSADAERDVELRVSEVKHGRLAMIAMLGVFAQAFVTR 404
Query: 251 EGPVENL 257
EGPV N+
Sbjct: 405 EGPVANV 411
>gi|59710172|gb|AAW88575.1| light harvesting protein [Eleusine coracana subsp. coracana]
Length = 64
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/64 (85%), Positives = 58/64 (90%)
Query: 220 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAER 279
Q ALLKVKEIKNGRLAMF+M FF+QAYVTG GPVENLAKHLSDPF NNLLTVISG AER
Sbjct: 1 QAALLKVKEIKNGRLAMFSMFAFFIQAYVTGGGPVENLAKHLSDPFGNNLLTVISGAAER 60
Query: 280 APTL 283
AP+L
Sbjct: 61 APSL 64
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 138/299 (46%), Gaps = 74/299 (24%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
A + +++LG PL S + +S+ A + +A PPAK
Sbjct: 5 ALLSGRQLLGRPLQSSVSRSSSSRKAP---------FMVRAEATPPAKQ----------- 44
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KW--- 123
G DR+++ + YL G +PGD+G+DP GLS P+ +W
Sbjct: 45 -----GADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAY 93
Query: 124 --------AMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINL 174
AM+G G + PE K G A+ WF+TG + G T Y+ P L
Sbjct: 94 GEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAG-TYTYWAD--PYTL 150
Query: 175 VFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGP-FDPLGL- 214
+ E+ LVG AE+ R + L LE L +PGGP F+PLG
Sbjct: 151 F---VFELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFG 207
Query: 215 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
K + LK+KEIKNGRLAM A LGF +QA TG GPV+NL HL+DP NN+LT +
Sbjct: 208 TKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 266
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 96/198 (48%), Gaps = 42/198 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
PE+L G +PGD+G+DP GLS P+ S+WAMLGAAG IPE K G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------- 193
P W+ G +T F I E+V +G AE R
Sbjct: 61 TPS--WYTAGEQEYFTDTTTLF------------IVELVFIGWAEGRRWADILNPGCVNT 106
Query: 194 -----TNGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
N L D +PGG FDPLG + P + L+ KEIKNGRLAM A++G + Q
Sbjct: 107 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH 166
Query: 247 YVTGEGPVENLAKHLSDP 264
TG GP++NL HL+DP
Sbjct: 167 IYTGTGPIDNLFAHLADP 184
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 132/273 (48%), Gaps = 47/273 (17%)
Query: 28 SAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ V T A A F+P A S+ + P+K ++ VA P++ A + ++
Sbjct: 2 ATVTTQASAA----VFRPCASKSRFLSGSPSKLNREVAFKPMSSSPASFKVEAKKGEWLP 57
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEA 136
GL P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE
Sbjct: 58 GLPS----PAYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 113
Query: 137 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN- 195
F K G P+ W+ D YF + + ++ ++ V + + I N
Sbjct: 114 FTKIGIINVPK--WY-------DAGKEEYFASSSTLFVIEFILFHYVEI--RRWQDIKNP 162
Query: 196 GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G +D + +PGG F+PL A + K KE+ NGRLAM A LGF
Sbjct: 163 GSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA----KEKELANGRLAMLAFLGFV 218
Query: 244 LQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
+Q VTG+GP +NL +HLSDP+ N ++ SGN
Sbjct: 219 IQHNVTGKGPFDNLLQHLSDPWHNTIIQTFSGN 251
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 101/215 (46%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P S P +L G +PGD+G+DP GL+ P+ +WAMLG
Sbjct: 74 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLG 128
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G L +T F I E+ +G
Sbjct: 129 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELFFIGW 174
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 175 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 234
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 235 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|53793542|dbj|BAD52991.1| a/b-binding protein precursor-like [Oryza sativa Japonica Group]
Length = 98
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Query: 185 VGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GF
Sbjct: 1 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANN 268
F+QA VTG+GP+ENLA HL+DP NN
Sbjct: 61 FVQAIVTGKGPLENLADHLADPVNNN 86
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 110/237 (46%), Gaps = 45/237 (18%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFA 93
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
S+WAML AG +IPE + G F D +F P L
Sbjct: 94 QAELMHSRWAMLAVAGILIPECLERLG---------FIENFSWYDAGAQEFFAD--PTTL 142
Query: 175 VFAVIAEIVLVGGAEYYRITN--GLDLE-----------DKLHPGG-PFDPLGLAK-DPD 219
+A + V G + + N +D++ D +PGG FDP + P+
Sbjct: 143 FVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPE 202
Query: 220 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
+L+ KEIKNGRLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 203 PVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTSQ 259
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ S+WAMLG AG ++PE F K G
Sbjct: 63 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKNYSLPPNEVGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP +NL +H+SDP+ N ++ + G
Sbjct: 228 GPFDNLLQHISDPWHNTIIQTLRG 251
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 100/215 (46%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P S P +L G +PGD+G+DP GL P+ +WAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 117
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G L +T F + E+ +G
Sbjct: 118 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------VVELFFIGW 163
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 164 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ S+WAMLG AG ++PE F K G
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 168
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 169 FKNYSLPPNEVGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGK 224
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP +NL +H+SDP+ N ++ + G
Sbjct: 225 GPFDNLLQHISDPWHNTIIQTLRG 248
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 109/217 (50%), Gaps = 44/217 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDD---------------FSKWAMLGAAGFIIPEAFNKFG 141
YL G +PGD+G+DP GL + ++WAMLGAAG I PE
Sbjct: 56 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 113
Query: 142 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 196
A P+A WF++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWAD--PYTIFFV---EIVAMQFAELRRLQDFRY 168
Query: 197 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 169 PGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 228
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
LG+ QA +TG+GP +NL +HL+DP NN+LT +G
Sbjct: 229 LGYGAQAVMTGKGPFQNLVEHLADPVNNNILTNFAGR 265
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 96/178 (53%), Gaps = 22/178 (12%)
Query: 104 GDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 153
GD+G+DP GL + P++ +WAML G ++PEA FG W K
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-FGN-------WVKA 52
Query: 154 GALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDP 211
+ G Y G +P L ++ E + + E+ R D E + +PGG FDP
Sbjct: 53 QEWAAVPGGQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEK-DPEKRKYPGGAFDP 111
Query: 212 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANN 268
LG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ N
Sbjct: 112 LGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNK 169
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 100/215 (46%), Gaps = 47/215 (21%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR ++ P S P +L G +PGD+G+DP GL P+ +WAMLG
Sbjct: 74 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 128
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G L +T F + E+ +G
Sbjct: 129 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------VVELFFIGW 174
Query: 188 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 229
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 175 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 234
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 235 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 108/241 (44%), Gaps = 49/241 (20%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
KK + P A V +A PDR ++ P S P +L G +PGD+G+DP
Sbjct: 38 KKLRLRTYTSPTAARSVTVCVAA--DPDRPLWFPG-----STPPPWLDGSLPGDFGFDPL 90
Query: 112 GLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 161
GL P+ +WAMLGAAG IPE K G P W+ G + +
Sbjct: 91 GLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTD 148
Query: 162 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHP 205
T F I E+ +G AE R N L D +P
Sbjct: 149 TTTLF------------IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYP 196
Query: 206 GG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 263
GG FDPLG P++ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+D
Sbjct: 197 GGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 256
Query: 264 P 264
P
Sbjct: 257 P 257
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 44/210 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P++L G + GD+G+DP L K P+ S++AM G AG ++ + G
Sbjct: 53 PQHLDGSLAGDFGFDPLELGKDPETLRWYVQAELVHSRFAMAGIAGILVTDLLRTVGGRD 112
Query: 145 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----ITNG--- 196
P VW++ GA + +T F + +++L+G AE R I+ G
Sbjct: 113 LP--VWYEAGATEFEFADTRTLF------------VVQLILMGYAETRRYYDYISPGSQA 158
Query: 197 -----LDLEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
L ED L +PGGPF DP GL +D + LK KE+KNGRLAM A+LG F+
Sbjct: 159 AQDTFLGFEDALAGLQSGYPGGPFFDPAGLGRDINNARTLKEKELKNGRLAMVAILGVFV 218
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
QA+ T GP++NL H+SDP+ N ++ +S
Sbjct: 219 QAFFTKTGPIDNLLTHVSDPWHNTIVQTLS 248
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 106/233 (45%), Gaps = 49/233 (21%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+ P A V +A PDR ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 46 TSPTAARSVTVCVAA--DPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPET 98
Query: 120 F----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 169
+WAMLGAAG IPE K G P W+ G + +T F
Sbjct: 99 LRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTDTTTLF--- 153
Query: 170 IPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPL 212
I E+ +G AE R N L D +PGG FDPL
Sbjct: 154 ---------IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 204
Query: 213 GLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
G P++ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 205 GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 93/173 (53%), Gaps = 20/173 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WA 124
WYGP+R +L E P YLTGE PGDYG+D GLS P+ F+K WA
Sbjct: 62 WYGPERVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 118
Query: 125 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 181
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 177
Query: 182 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQ-FALLKVKEIKN 231
++L+G E YR+ G ++ D L+PGG FDPLGLA+ FA V E +
Sbjct: 178 VLLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLARRSKTPFASSNVNEDQQ 230
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 103/205 (50%), Gaps = 38/205 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE F K G
Sbjct: 63 PMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 171
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPNECGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIVQHNVTGK 227
Query: 252 GPVENLAKHLSDPFANNLLTVISGN 276
GP +NL +H+SDP+ N ++ GN
Sbjct: 228 GPFDNLLQHISDPWHNTIVQTFGGN 252
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 100/204 (49%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE F K G
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 195
P+ W+ D YF + + ++ ++ V + + I N
Sbjct: 123 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 196 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPQHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP ENL +HLSDP+ N ++ I G
Sbjct: 228 GPFENLLQHLSDPWHNTIINTIRG 251
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 110/237 (46%), Gaps = 45/237 (18%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 13 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFA 63
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
S+WAML AG +IPE + G F D +F P L
Sbjct: 64 QAELMHSRWAMLAVAGILIPECLERLG---------FIENFSWYDAGAQEFFAD--PTTL 112
Query: 175 VFAVIAEIVLVGGAEYYRITN--GLDLE-----------DKLHPGG-PFDPLGLAK-DPD 219
+A + V G + + N +D++ D +PGG FDP + P+
Sbjct: 113 FVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPE 172
Query: 220 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
+L+ KEIKNGRLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 173 PVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTSQ 229
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 104/203 (51%), Gaps = 38/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P+YLTG + GD G+DP GL++ P++ +WAMLG AG ++PE F K G
Sbjct: 65 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGIIN 124
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
PE W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 125 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 173
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 174 FKQYSLPKGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFVVQHNVTGK 229
Query: 252 GPVENLAKHLSDPFANNLLTVIS 274
GP ENL +HLSDP+ N ++ +S
Sbjct: 230 GPFENLLQHLSDPWHNTIVQTLS 252
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 117/241 (48%), Gaps = 50/241 (20%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-- 121
VS V E L GPDR I+ P S P +L G +PGD+G+DP GL +P+
Sbjct: 14 GVSTVCEPL----GPDRPIWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSEPELLRWF 64
Query: 122 --------KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 173
+WAML AAG ++P+ ++G G D + YF P
Sbjct: 65 AQAELMHGRWAMLAAAGILVPDLLARWGF--------IDAGFSWFDAGSREYFAD--PWT 114
Query: 174 LVFAVIAEIVLVGGAEYYRITNGL-----DLEDKL-----------HPGG-PFDPLGLAK 216
L ++++ L+G AE R + L D+E + +PGG FD +
Sbjct: 115 LF---VSQMALMGWAEGRRWADYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGR 171
Query: 217 -DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 275
P+ +L+ KEIKNGRLAM A +GF+ QA TG+GP++NL HL+DP N+ + +
Sbjct: 172 GSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 231
Query: 276 N 276
+
Sbjct: 232 H 232
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 113/235 (48%), Gaps = 45/235 (19%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 45 VSAVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFA 95
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
++WAML G ++PE K G W+ GA YF P L
Sbjct: 96 QAELMHARWAMLAVFGILVPELLEKIGYI--ENFSWYDAGAR-------EYFVD--PTTL 144
Query: 175 VFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPD 219
+ + V G + + N +D+E K+ +PGG FDP+ + P+
Sbjct: 145 FVVQMGLMGWVEGRRWADMVNPGSVDIEPKVPHITNPKPDVGYPGGLWFDPMMWGRGSPE 204
Query: 220 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
+L+ KEIKNGRLAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 205 PVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 95/176 (53%), Gaps = 22/176 (12%)
Query: 103 PGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 152
PGD+G+DP GL + P + +WAML G ++PEA +G W K
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-------WVK 54
Query: 153 TGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFD 210
L G Y G +P + ++A E + + E+ R D E K +PGG FD
Sbjct: 55 AQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFD 113
Query: 211 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPF 265
PLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+
Sbjct: 114 PLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 169
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 111/235 (47%), Gaps = 45/235 (19%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 45 VSAVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFA 95
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
S+WAML G ++PE + G + D T YF P L
Sbjct: 96 QAELMHSRWAMLAVFGILVPELLERIG---------YIENFSWYDAGTREYFVD--PTTL 144
Query: 175 VFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPD 219
+ + V G + I N +D+E K+ +PGG FDP+ + P+
Sbjct: 145 FVVQMGLMGWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPE 204
Query: 220 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
+L+ KEIKNG LAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 205 PVMVLRTKEIKNGGLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 36/199 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P+YL G + GDYG+DP GL P+ + +WAMLG AG + E N
Sbjct: 46 PKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIIN------ 99
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA---VIAEIVLVGGAEYYRITNGLDLE- 200
PE W+ G + N ++ G + + + A ++ V V + R + ++ +
Sbjct: 100 -PEQWWYSAG---MPENLPSFDGNKVNMGGILAWEFLLMHFVEVRRWQDIRKKDSVNADP 155
Query: 201 ----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250
+ +PGGPFDPLG +K F ++ KEIKNGRLAM A + F +QA TG
Sbjct: 156 FNPNLKVPNPEMGYPGGPFDPLGFSKG--NFKEVQTKEIKNGRLAMVAFVAFTIQAQATG 213
Query: 251 EGPVENLAKHLSDPFANNL 269
+GP+ NL HL+ PF+NN+
Sbjct: 214 KGPLANLTDHLASPFSNNV 232
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 109/226 (48%), Gaps = 45/226 (19%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 50 GVSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWL 100
Query: 121 -------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 173
++WAMLG +G +IPE K G W+ G ++ YF P
Sbjct: 101 AQAELMHARWAMLGVSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFAD--PTT 149
Query: 174 LVFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DP 218
L +A + V G + I N +D+E KL +PGG FDP+ + P
Sbjct: 150 LFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSP 209
Query: 219 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
+ +L+ KEIKNGRLAM A LGF QA G P++NL HL+DP
Sbjct: 210 EPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADP 255
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 120/239 (50%), Gaps = 50/239 (20%)
Query: 77 GPDR---RIFLPEGLLDRSEI------PEYLTGEVPGDYGYDPFGLSK--------KPDD 119
GPDR R+ P G RS I YL G +PGDYG+DP GL P
Sbjct: 5 GPDRIADRMPPPPGGSKRSLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQW 64
Query: 120 F-------SKWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIP 171
++AMLGAAG I PE + G A+ WF++G + GN +Y+ P
Sbjct: 65 LPYAEIINGRFAMLGAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGN-YSYWAD--P 121
Query: 172 INLVFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGP-FDPL 212
L + E+ L+G AE+ R + L LE L +PGGP F+ L
Sbjct: 122 YTLF---VLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFL 178
Query: 213 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
G K+ + LKVKE+KNGRLAM A+LG+F QA TG GP +NL HL+DP NN+LT
Sbjct: 179 GFGKNEKELQELKVKEVKNGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLT 237
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 105/203 (51%), Gaps = 38/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P+YLTG + GD G+DP GL++ P++ +WAMLG AG ++PE F K G
Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
PE W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 124 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 172
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A P Q A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 173 FKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGK 228
Query: 252 GPVENLAKHLSDPFANNLLTVIS 274
GP ENL +HLSDP+ N ++ +
Sbjct: 229 GPFENLLQHLSDPWHNTIVQTFN 251
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 113/236 (47%), Gaps = 45/236 (19%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF--- 120
VS V E L PDR ++ P S PE+L G +PG++G+DP GL P+
Sbjct: 50 GVSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGNFGFDPLGLGSDPELLKWL 100
Query: 121 -------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 173
++WAMLG +G +IPE K G W+ G ++ YF P
Sbjct: 101 AQAELMHARWAMLGVSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFAD--PTT 149
Query: 174 LVFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DP 218
L +A + V G + I N +D+E KL +PGG FDP+ + P
Sbjct: 150 LFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSP 209
Query: 219 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
+ +L+ KEIKNGRLAM A LGF QA G P++NL HL+DP N+ + +
Sbjct: 210 EPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFT 265
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 113/240 (47%), Gaps = 51/240 (21%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF---- 120
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD
Sbjct: 53 VSSVCEPLP----PDRPLWFPG-----SAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 103
Query: 121 ------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174
S+WAML G +IPE + G F + + YF + +
Sbjct: 104 QAELIHSRWAMLAVTGILIPECLERLG---------FIENFSWYEAGSREYFADSTTL-- 152
Query: 175 VFAVIAEIVLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK- 216
+A++VL+G AE R + +D+E K +PGG FD + +
Sbjct: 153 ---FVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRG 209
Query: 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
P+ +L+ KEIKNGRLAM A +GF QA T + P+ENL HL+DP N+ + + +
Sbjct: 210 SPEPVMVLRTKEIKNGRLAMLAFVGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 269
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 43/231 (18%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
K +A PA +KPV+ + KWY ++ P YL G +PGDYGYDP
Sbjct: 26 KASAKPAGAKPVSTVVRADLGKKWY-------------TGAKPPAYLDGSMPGDYGYDPL 72
Query: 112 GLSKKPD----------DFSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 161
+ P+ + +WAM+G AG + +A +FG + P+ W++ GA+ +
Sbjct: 73 RMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISDLPD--WYEAGAVAQASS 130
Query: 162 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQF 221
P +L + EI + E +RI+ K G D +G+ PD
Sbjct: 131 ---------PFDLQTLIAIEIFVFATVEGFRISTW----KKTGKPGFLDIMGM-DSPD-- 174
Query: 222 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
+++KEIKNGRLAMFA +GF Q +V G GPVE L HL +P NN+ +
Sbjct: 175 --MRLKEIKNGRLAMFAFVGFVAQYFVNGMGPVEGLLNHLENPQQNNVFST 223
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 97/183 (53%), Gaps = 29/183 (15%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKW 123
++YGPDR +L + P YLTGE PGDYG+D GLS P+ F ++W
Sbjct: 31 EFYGPDRAKWLGP---FSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHARW 87
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 180
AMLGA G I PE A E VWFK GA + L+Y G ++ ++ +
Sbjct: 88 AMLGALGCITPELIGGDIA----EPVWFKAGAQIFSEGGLDYLGNPSLVHAQSIIATLAV 143
Query: 181 EIVLVGGAEYYRITN-------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 233
+++L+G AE +R G DL D L+PG FDPL PD FA LKVKEIKNGR
Sbjct: 144 QVILMGQAEAFRAAGYVVPGGFGEDL-DNLYPGDAFDPLAWLI-PDTFAELKVKEIKNGR 201
Query: 234 LAM 236
LA
Sbjct: 202 LAC 204
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 116/254 (45%), Gaps = 45/254 (17%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K A++ P S A G RR++ P E P YL GE+ GDY
Sbjct: 13 AFLTGRKVVSKARAGPAPRSTFQVSAAASQG--RRLWAPG-----VEAPSYLNGELAGDY 65
Query: 107 GYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
G+DP GL KP+ ++WAML AG + E V+F L
Sbjct: 66 GWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIVK--------PGVFFYNAGL 117
Query: 157 LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL------------- 203
+ +N+ G +NL + E +L E R + + +D +
Sbjct: 118 PENLPGINFGGPEGKVNLGGLLAWEFLLFHWVEVRRWQD-IKKKDSVNQDPIFKGNKVPN 176
Query: 204 ----HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 259
+PGG FDP G +K F ++ KEIKNGRLAM A +GF +QA TG+GP+ NL
Sbjct: 177 PELGYPGGIFDPFGFSKG--NFKEVQTKEIKNGRLAMVAFVGFIIQAQATGQGPLANLGA 234
Query: 260 HLSDPFANNLLTVI 273
HL++PF NN+ I
Sbjct: 235 HLANPFGNNITKNI 248
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 97/201 (48%), Gaps = 42/201 (20%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFG 141
S PE+L G +PGD+G+DP GL +P+ +WAMLGAAG IPE K G
Sbjct: 68 STAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIG 127
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT------- 194
P W+ G YF + +V E++ +G AE R
Sbjct: 128 ILNTPS--WYTAG-------EQTYFADQTTLFIV-----ELLFMGWAEGRRWADILKPGS 173
Query: 195 ---------NGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
N L D +PGG FDPLG A + L+ KEIKNGRLAM A++G +
Sbjct: 174 VNTDPVFPNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVMGAW 233
Query: 244 LQAYVTGEGPVENLAKHLSDP 264
QA TG GP++NL HL+DP
Sbjct: 234 FQAVYTGTGPIDNLFAHLADP 254
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 108/244 (44%), Gaps = 55/244 (22%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
+ KAA P ++ + V E W+ + P +L G +P D+G+
Sbjct: 50 LRQSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGF 96
Query: 109 DPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
DP GL P+ +WAMLGAAG IPE K G P W+ G L
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGEL-- 152
Query: 159 DGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDK 202
YF + +V E++ +G AE R N L D
Sbjct: 153 -----EYFTDKTTLFVV-----EMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDV 202
Query: 203 LHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 260
+PGG FDPLG P++ L+ KEIKNGRLAM A++G + QA TG GP++NL H
Sbjct: 203 GYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAH 262
Query: 261 LSDP 264
L+DP
Sbjct: 263 LADP 266
>gi|115776|sp|P14584.1|CB21_RAPSA RecName: Full=Chlorophyll a-b binding of LHCII type 1 protein;
AltName: Full=Chlorophyll a-b binding of LHCII type I
protein; Short=CAB; Short=LHCP
gi|21100|emb|CAA34640.1| chlorophyll a/b binding protein (124 AA) [Raphanus sativus]
Length = 124
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
Query: 181 EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 237
+++L+G E YR+ L ED L+PGG FDPL DP+ FA LKVKEIKNGRLAMF
Sbjct: 22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMF 81
Query: 238 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 82 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 112
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 38/205 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YLTG +PGD G+DP GL++ P++ +WAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ G YF + + ++ +++ V + + I N G +D +
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGK 227
Query: 252 GPVENLAKHLSDPFANNLLTVISGN 276
GP +NL +H+SDP+ N ++ + GN
Sbjct: 228 GPFDNLLQHISDPWHNTIVQTLGGN 252
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 109/214 (50%), Gaps = 44/214 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KW-----------AMLGAAGFIIPEAFNKF 140
YL G +PGD+G+DP GLS P+ +W AM+G G I PEA K
Sbjct: 59 YLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 117
Query: 141 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 196
G A+ WF+ GA+ G T Y+ P L + E+ L+G AE+ R+ +
Sbjct: 118 GLVPSETAIPWFQAGAIPPAG-TYQYWAD--PYTLF---VFEMALIGFAEHRRLQDWYNP 171
Query: 197 --------LDLE-------DKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGRLAMFAM 239
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A
Sbjct: 172 GSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLAF 231
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LG LQA TG GP +NL HLSDP NN+LT +
Sbjct: 232 LGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 265
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 105/205 (51%), Gaps = 38/205 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YLTG +PGD G+DP GL++ P++ +WAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIIN 122
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 VPK--WY-------DAGKEEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPKGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGK 227
Query: 252 GPVENLAKHLSDPFANNLLTVISGN 276
GP +NL +HLSDP+ N ++ +SG+
Sbjct: 228 GPFDNLLQHLSDPWHNTIVQTLSGS 252
>gi|357496383|ref|XP_003618480.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355493495|gb|AES74698.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 180
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 74/96 (77%), Gaps = 4/96 (4%)
Query: 175 VFAVIAEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 232
++ V+A +L+G E YRI +G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNG
Sbjct: 75 IWVVLA--ILMGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG 132
Query: 233 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
RLAMF+M GFF+QA VT +GP+ENLA H++DP +N
Sbjct: 133 RLAMFSMFGFFVQAIVTEKGPLENLADHIADPVNSN 168
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
MF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 1 MFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 33
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 124/259 (47%), Gaps = 63/259 (24%)
Query: 46 VALFSKKKA--APPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG--- 100
+AL K+ A A PA S+ V+ V R+ +LP SEIP++L
Sbjct: 1 MALMMKRSAVAARPAVSRKAVVTCVA----------RQSWLPG-----SEIPKHLDSPAA 45
Query: 101 -EVPGDYGYDPFGLSKKPDDFSKW-----------AMLGAAGFIIPEAFNKFGANCGPEA 148
+ G++G+DP GL K + +W AM AG +IP K GA PE
Sbjct: 46 LAMAGNFGFDPLGLGKDAEAL-RWYQQAELVHARTAMTAVAGILIPGLLTKAGALNVPE- 103
Query: 149 VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE---- 200
W+ G + ++ + P + AV ++ L G E R + G E
Sbjct: 104 -WYDAGKVAIESSF-------APFGALLAV--QLFLTGFVEAKRWQDFKKPGSQAEKGSF 153
Query: 201 -----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
D +PGG FDPLGL+KD D+ A K+KEIKNGRLAM A LGF Q + T
Sbjct: 154 LGFETAFAGTGDNGYPGGIFDPLGLSKDADKLADWKLKEIKNGRLAMVAFLGFTAQKFAT 213
Query: 250 GEGPVENLAKHLSDPFANN 268
G+GP++NLA HL+DP+ N
Sbjct: 214 GKGPIDNLAAHLADPWHVN 232
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 107/212 (50%), Gaps = 44/212 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDD---------------FSKWAMLGAAGFIIPEAFNKFG 141
YL G +PGD+G+DP GL + ++WAMLGAAG I PE
Sbjct: 56 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 113
Query: 142 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 196
A P+A WF++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWAD--PYTIFFV---EIVAMQFAELRRLQDFRY 168
Query: 197 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 169 PGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 228
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
LG+ QA +TG+GP +NL +HL+DP NN+LT
Sbjct: 229 LGYGAQAVMTGKGPFQNLVEHLADPVNNNILT 260
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 109/214 (50%), Gaps = 44/214 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KW-----------AMLGAAGFIIPEAFNKF 140
YL G +PGD+G+DP GLS P+ +W AM+G G I PEA K
Sbjct: 60 YLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 118
Query: 141 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 196
G A+ WF+ GA+ G T Y+ P L + E+ L+G AE+ R+ +
Sbjct: 119 GLVPPETAIPWFQAGAIPPAG-TYQYWAD--PYTLF---VFEMALIGFAEHRRLQDWYNP 172
Query: 197 --------LDLE-------DKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGRLAMFAM 239
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A
Sbjct: 173 GSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLAF 232
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LG LQA TG GP +NL HLSDP NN+LT +
Sbjct: 233 LGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 266
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 111/240 (46%), Gaps = 51/240 (21%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGF 131
DR ++ P ++ PEYL G + GDYG+DPFGL K PD + AG
Sbjct: 53 DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGE 107
Query: 132 IIPEAFNK--------------FG-----------------ANCGPEAVWFKTGALLLDG 160
+I F FG A G V + TG D
Sbjct: 108 VIGTRFEDADIKSTPLQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDA 167
Query: 161 NTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLG 213
+ +Y G+ +P + + E++++G E+ R LD E +L+PGG FDPLG
Sbjct: 168 GKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLG 226
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LA DP++ L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP + +
Sbjct: 227 LAADPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTL 286
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 109/210 (51%), Gaps = 41/210 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSK--------KPDDF-------SKWAMLGAAGFIIPEAFNKFG 141
YL G +PGDYG+DP GL P ++AMLGAAG I PE + G
Sbjct: 16 YLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRIG 75
Query: 142 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 196
A+ WF++G + GN +Y+ P L + E+ L+G AE+ R +
Sbjct: 76 LIPQETAIPWFQSGVIPPVGN-YSYWAD--PYTLF---VLEMALMGFAEHRRAQDYYKPG 129
Query: 197 -------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
L LE L +PGGP F+ LG K+ + LKVKE+KNGRLAM A+LG
Sbjct: 130 SMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLG 189
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
+F QA TG GP +NL HL+DP NN+LT
Sbjct: 190 YFTQAIFTGVGPFQNLLDHLADPVHNNVLT 219
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 128/271 (47%), Gaps = 28/271 (10%)
Query: 9 TPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPV 68
+P +S + G P ++ S+ + S +A +S AA S AV
Sbjct: 1176 SPQSSKASAGTEGRPRDLVSSSMNANAATSLGGDQGSMAYWSNGSAALVVTS---AVRNT 1232
Query: 69 NEELAKWYGPDRRIFLPEGLLD---RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS---- 121
+ YG R+ FLP LL+ + +P YLTGE+PGD G+DP + + D
Sbjct: 1233 GARVDDLYGERRKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQRDIMKLRER 1292
Query: 122 -----KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT----LNYFGKNIPI 172
+WAML A G ++PE+ + P W+ T N+ L Y G+NIP
Sbjct: 1293 ELIHGRWAMLAAIGVLVPESTARLSLFGTPGQHWWNTHIEWTGTNSGIPELTYLGENIPW 1352
Query: 173 NLVFAVIAEIVLVGGAEYYRITNGLDLE-----DKLHPGGP-FDPLGLAK--DPDQFALL 224
+ + I + L AE R T L++E D+L+PGG FDPLG+ ++ +L
Sbjct: 1353 GVFWLPIIHLPLFFVAEMLR-TGRLEVEAFKDLDRLYPGGKLFDPLGIGGGVSDEELKIL 1411
Query: 225 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 255
K EI++ RLAM A GF ++A G GP++
Sbjct: 1412 KTIEIQHCRLAMIASFGFIVEALAWGAGPLD 1442
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 110/213 (51%), Gaps = 44/213 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GD+G+DP GL + P++ +++AM G AG ++ + G +
Sbjct: 66 PPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRVTGISN 125
Query: 145 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAE---YYRITNG---- 196
P VW++ GA+ + +T F I +++L+G E Y TN
Sbjct: 126 LP--VWYEAGAVKFEFASTEALF------------IVQLILMGFVETKRYMDFTNPGSQA 171
Query: 197 -----LDLEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
LE L +PGGP +PLGLA+D K+KEIKNGRLAM AMLG F+
Sbjct: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAMVAMLGVFV 231
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
QA VT GP+ENL +HLS+P+ ++ IS +
Sbjct: 232 QASVTHAGPIENLVEHLSNPWHKTIIQTISSTS 264
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 110/228 (48%), Gaps = 46/228 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFII-------------- 133
PEYL G + GDYG+DPFGL K + D + AG II
Sbjct: 64 PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPF 123
Query: 134 ---PEAF--NKFG------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
E F +F A G V + TG D + +Y G+ +
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 183
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E +++G E+ R LD E +L+PGG FDPLGLA DP++ A L++ EI
Sbjct: 184 PFSITTLIWIEALVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEI 242
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
K+ RLAM LGF +QA VTG+GP+ N A HLSDP ++ S ++
Sbjct: 243 KHARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 109/210 (51%), Gaps = 41/210 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSK--------KPDDF-------SKWAMLGAAGFIIPEAFNKFG 141
YL G +PGDYG+DP GL P ++AMLGAAG I PE + G
Sbjct: 16 YLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRIG 75
Query: 142 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 196
A+ WF++G + GN +Y+ P L + E+ L+G AE+ R +
Sbjct: 76 LIPQETAIPWFQSGVIPPVGN-YSYWAD--PYTLF---VLEMALMGFAEHRRAQDYYKPG 129
Query: 197 -------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 241
L LE L +PGGP F+ LG K+ + LKVKE+KNGRLAM A+LG
Sbjct: 130 SMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLG 189
Query: 242 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
+F QA TG GP +NL HL+DP NN+LT
Sbjct: 190 YFTQAIFTGVGPFQNLLDHLADPVHNNVLT 219
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 110/228 (48%), Gaps = 46/228 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFII-------------- 133
PEYL G + GDYG+DPFGL K + D + AG II
Sbjct: 64 PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPF 123
Query: 134 ---PEAF--NKFG------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
E F +F A G V + TG D + +Y G+ +
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 183
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E++++G E+ R LD E +L+PGG FDPLGLA DP++ A L++ EI
Sbjct: 184 PFSITTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEI 242
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
K+ RLAM LGF +QA TG+GP+ N A HLSDP ++ S ++
Sbjct: 243 KHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 124/267 (46%), Gaps = 41/267 (15%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEE---LAKWYGPDRRIFLPEGLLDR---SEI 94
++F VAL + + PA+ V V E LAK R+ GL S+
Sbjct: 5 TSFSGVALRPAQSVSRPARRSSVVVRSEGSEGSELAK----VERVAKAGGLYQNFTSSQA 60
Query: 95 PEYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNK 139
YL G +PGD+G+DP GL P+ + +WAMLG AGF+ PE
Sbjct: 61 LGYLDGTLPGDFGFDPLGLCDPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLAT 120
Query: 140 FGA--NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG- 196
GA EAVWF++G + G Y+ + V A++ + + Y+
Sbjct: 121 IGAIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNFAELKRWQDYQSPGSQ 180
Query: 197 -----LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
L LE + +PGG F + L L K P+ L+ EI+NGRLAM A LG F
Sbjct: 181 GKQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRLAMIACLGCF 240
Query: 244 LQAYVTGEGPVENLAKHLSDPFANNLL 270
QA +T +GP NL HL+DP +NN+L
Sbjct: 241 GQAVMTTKGPFANLLDHLADPISNNVL 267
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 100/208 (48%), Gaps = 42/208 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGP 146
+L G +PGD+G+DPFGL PD S+WAML G IIPE + G
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLG----- 132
Query: 147 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-----GLDLED 201
F D + YF + + +A++VL+G AE R + +D+E
Sbjct: 133 ----FIENFSWYDAGSREYFADSTTL-----FVAQMVLMGWAEGRRWADLIKPGSVDIEP 183
Query: 202 KL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
K +PGG FD + + P+ +L+ KEIKNGRLAM A LGF QA
Sbjct: 184 KYPHKVNPKPDAGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATY 243
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISGN 276
T + P+ENL HL+DP N+ + + +
Sbjct: 244 TSQDPIENLMAHLADPGHCNVFSAFTSH 271
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 101/223 (45%), Gaps = 48/223 (21%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGA 128
DR ++ P S+ PE+L G +PGD+G+DP GL P+ +WAMLGA
Sbjct: 64 DRPLWFPG-----SQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 118
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 188
AG IPEA K G P D TL + EI+L A
Sbjct: 119 AGIFIPEALTKAGILNTPSWTVAGDQQYFTDATTL--------------FVIEIILFAWA 164
Query: 189 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAKDPDQFAL--LKVKEI 229
E R N L D +PGG FDPLG + D L L+ +EI
Sbjct: 165 EGRRWADIINPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREI 224
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
KNGRLAM A+LG +QA T GP++NL HL+DP N + +
Sbjct: 225 KNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFAL 267
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G +P D+G+DP GL +P+ S+WAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------- 194
P W+ G YF + I E++L+G AE R
Sbjct: 133 TP--FWYTAGEQ-------EYFTDQTTL-----FIVEMILLGWAEGRRWADILKPGSVNT 178
Query: 195 ------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
N L D +PGG FDP G P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 179 DPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWFQA 238
Query: 247 YVTGEGPVENLAKHLSDP 264
TG P++NL HL+DP
Sbjct: 239 VYTGARPIDNLLAHLADP 256
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G +P D+G+DP GL +P+ S+WAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------- 193
P W+ G YF + I E++L+G AE R
Sbjct: 133 TP--FWYTAGEQ-------EYFTDQTTL-----FIVEMILLGWAEGRRWADILKPGSVNT 178
Query: 194 -----TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
N L D +PGG FDP G P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 179 DPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWFQA 238
Query: 247 YVTGEGPVENLAKHLSDP 264
TG P++NL HL+DP
Sbjct: 239 VYTGARPIDNLLAHLADP 256
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 110/228 (48%), Gaps = 46/228 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFII-------------- 133
PEYL G + GDYG+DPFGL K + D + AG II
Sbjct: 64 PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPF 123
Query: 134 ---PEAF--NKFG------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
E F +F A G V + TG D + +Y G+ +
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 183
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E++++G E+ R LD E +L+PGG FDPLGLA DP++ A L++ EI
Sbjct: 184 PFSITTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEI 242
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
K+ RLAM LGF +QA TG+GP+ N A HLSDP ++ S ++
Sbjct: 243 KHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 126/281 (44%), Gaps = 85/281 (30%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F KK+AP +KP + P+ WY ++ PE+L G + GDYG+
Sbjct: 34 FGTKKSAPKRSAKPTSDRPL------WY-------------PGAKAPEWLDGSLVGDYGF 74
Query: 109 DP--------------------------------------------------FGLSKKPD 118
DP FGL + +
Sbjct: 75 DPFGLGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRE 134
Query: 119 D---FSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINL 174
+WAML G + E W G + L++G++ Y G+ +P ++
Sbjct: 135 CELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVELVEGSS--YLGQPLPFSI 184
Query: 175 VFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGR 233
+ E++++G E+ R + LD E +L+PGG F DPLGLA+DP++ A L++ EIK+ R
Sbjct: 185 TTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHAR 243
Query: 234 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
LAM A LGF +QA VTG+GP+ N A HLSDP ++ S
Sbjct: 244 LAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFS 284
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 121/276 (43%), Gaps = 53/276 (19%)
Query: 19 MLGNPLNVSSAVRTSA-PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
MLG N SS +A PGA S+F A S + A+S S A
Sbjct: 1 MLGLVSNSSSFTAVAALPGAPRASSFLGGAGRSGRLLLRQAESSSARASFAVRAAA---- 56
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLG 127
PDR I+ P S P +L G +PGD+G+DP GL P+ +WAMLG
Sbjct: 57 PDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLG 111
Query: 128 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 187
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 112 AAGIFIPEFLTKIGILNTPS--WYTAGEHQYFTDTTTLF------------IIELILIGW 157
Query: 188 AEYYR-----ITNGLDLEDKLHP-------------GGPFDPLGLAK-DPDQFALLKVKE 228
AE R I G D + P G DPLG P++ L+ KE
Sbjct: 158 AEGRRWADIIINPGCVNTDPIFPQQQVHGHRRGEPCGLWLDPLGWGTVSPEKIKELRTKE 217
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 264
IKNGR+AM A++G + QA TG GP++N H++DP
Sbjct: 218 IKNGRVAMLAVMGAWFQAEHTGTGPIDNFFAHVADP 253
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 99/207 (47%), Gaps = 44/207 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ PD +WAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 200
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 201 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
D + +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPVFKNYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISG 275
TG+GP ENL +HLSDP+ N ++ G
Sbjct: 224 TGKGPFENLLQHLSDPWHNTIIQTFQG 250
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 107/212 (50%), Gaps = 44/212 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDD---------------FSKWAMLGAAGFIIPEAFNKFG 141
YL G +PGD+G+DP GL + ++WAMLGAAG I PE
Sbjct: 43 YLDGTLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 100
Query: 142 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 196
A P+A WF++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 101 AGLIPDATNIKWFESGVIPPAGSYDGYWAD--PYTIFFV---EIVAMQFAELRRLQDFRY 155
Query: 197 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 156 PGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 215
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
LG+ QA +TG+GP +NL +HL+DP NN+LT
Sbjct: 216 LGYGAQAVLTGKGPFQNLVEHLADPVNNNILT 247
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 115/244 (47%), Gaps = 51/244 (20%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGF 131
DR ++ P + P+YL G + GDYG+DPFGL K + D + AG
Sbjct: 54 DRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGG 108
Query: 132 IIPEAFNK--------------FG-----------------ANCGPEAVWFKTGALLLDG 160
II F FG A G +V + TG D
Sbjct: 109 IIGTRFESSEVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDA 168
Query: 161 NTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLG 213
+ +Y G+ +P ++ + E++++G E+ R LD E +L+PGG FDPLG
Sbjct: 169 GKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLG 227
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LA DP++ L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP +
Sbjct: 228 LAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTF 287
Query: 274 SGNA 277
G++
Sbjct: 288 GGSS 291
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 103/205 (50%), Gaps = 38/205 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE F G
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 120
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 121 VPK--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 169
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 170 FKNYSLPPNECGYPGGIFNPLNFAATEEA----KEKELANGRLAMLAFLGFIVQHNVTGK 225
Query: 252 GPVENLAKHLSDPFANNLLTVISGN 276
GP +NL +HLSDP+ N ++ +S N
Sbjct: 226 GPFDNLLQHLSDPWHNTIIQTLSSN 250
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 100/200 (50%), Gaps = 23/200 (11%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK----------WAMLGAA 129
R+ + G L S+ P +L ++PG+YG+DP L K+P + WAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 130 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 189
G + E +G W+ ++G +FG +P +L + E V + AE
Sbjct: 91 GSLAVELLG-YGN-------WYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 142
Query: 190 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
+ PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q T
Sbjct: 143 ----GQRRRCRRRRLPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAAT 198
Query: 250 GEGPVENLAKHLSDPFANNL 269
G+ P+ L +HL++P+A L
Sbjct: 199 GKAPLAALGEHLANPWAPTL 218
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 108/227 (47%), Gaps = 46/227 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFII-------------- 133
PE+L G + GDYG+DPFGL K D + AG +I
Sbjct: 122 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPF 181
Query: 134 ---PEAF--NKFG------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
E F +F A G V + TG D + Y G+ +
Sbjct: 182 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPL 241
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E++++G E+ R LD E +L+PGG FDPLGLA DP++ A L++ EI
Sbjct: 242 PFSITTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEI 300
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
K+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 301 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 347
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 115/244 (47%), Gaps = 51/244 (20%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGF 131
DR ++ P + P+YL G + GDYG+DPFGL K + D + AG
Sbjct: 53 DRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGE 107
Query: 132 IIPEAFNK--------------FG-----------------ANCGPEAVWFKTGALLLDG 160
II F FG A G +V + TG D
Sbjct: 108 IIGTRFETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDA 167
Query: 161 NTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLG 213
+ +Y G+ +P ++ + E++++G E+ R LD E +L+PGG FDPLG
Sbjct: 168 GKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLG 226
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LA DP++ L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP +
Sbjct: 227 LASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTF 286
Query: 274 SGNA 277
S ++
Sbjct: 287 SSSS 290
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 99/200 (49%), Gaps = 30/200 (15%)
Query: 80 RRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAA 129
R +++P S P +LTG +P DYG+DP GL K+P + S+WAMLG A
Sbjct: 37 RAVWMPG-----STPPAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLGVA 91
Query: 130 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 189
G EA W + A + D T Y G P L V E+ ++ E
Sbjct: 92 GAAGQEAITGV--------TWIE--APVQDSQT--YLGAESPFPLPVVVAIEVFVMAFVE 139
Query: 190 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
R +N D +L+PGG FDP G +K D F LK KEI NGR+AM A G QA T
Sbjct: 140 QQR-SNEKDPAKRLYPGGAFDPAGFSKGAD-FETLKKKEIANGRVAMLAFAGLIGQAQAT 197
Query: 250 G-EGPVENLAKHLSDPFANN 268
EGP+ L +H++DP+ N
Sbjct: 198 NLEGPLSALGRHVADPWHVN 217
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 15/129 (11%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KW 123
+WYGPDR +LP+ L + +P+YLTGE PGDYG+D GLS P +F+ +W
Sbjct: 119 EWYGPDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARW 176
Query: 124 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVI-A 180
AMLGA G + PE N + E VW+K GAL+L+G +++Y G K I + + A+ A
Sbjct: 177 AMLGALGCVFPEVINSYYNGNIAEPVWWKAGALVLNGQSIDYLGSDKFIHASSIIAIAGA 236
Query: 181 EIVLVGGAE 189
++VL+GGAE
Sbjct: 237 QVVLMGGAE 245
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 93/192 (48%), Gaps = 24/192 (12%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFG 141
+E P +L G++P DYG+DP L +KPD+ ++WAM+G AG + G
Sbjct: 38 AEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGVAGAV--------G 89
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 201
+ W D T Y G L + VLV AE R E
Sbjct: 90 VEIAGQGDWASAQPTTWDA-TAKYLGNETHAPLFAVIGVNGVLVAFAESQR--QAATGEA 146
Query: 202 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV--TGEGPVENLAK 259
+L+PGG FDP GL+K D F LK KE+ NGR+AM A G Q +G GPV+ LA
Sbjct: 147 RLYPGGSFDPAGLSKGKD-FETLKRKELANGRVAMMAFFGIMAQHQADPSGPGPVKQLAN 205
Query: 260 HLSDPFANNLLT 271
HL+DP+ N+ T
Sbjct: 206 HLADPWHVNVCT 217
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 108/228 (47%), Gaps = 46/228 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFIIPEAF---------- 137
P+YL G + GDYG+DPFGL K + D + AG II F
Sbjct: 61 PDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDIIGTRFEPGEVKSTPF 120
Query: 138 ----NKFG-----------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
FG A G +V + TG D + +Y G+ +
Sbjct: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 180
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E++L+G E+ R LD E +L+PGG FDPLGLA DP++ L++ EI
Sbjct: 181 PFSMTTLIWIEVLLIGYIEFQRNAE-LDSEKRLYPGGSYFDPLGLASDPEKKERLQLAEI 239
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
K+ RLAM LGF +QA TG+GP+ N A HLSDP + S ++
Sbjct: 240 KHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFSSSS 287
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 108/227 (47%), Gaps = 46/227 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFII-------------- 133
PE+L G + GDYG+DPFGL K D + AG +I
Sbjct: 64 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPF 123
Query: 134 ---PEAF--NKFG------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
E F +F A G V + TG D + Y G+ +
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPL 183
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E++++G E+ R LD E +L+PGG FDPLGLA DP++ A L++ EI
Sbjct: 184 PFSITTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEI 242
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
K+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 243 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 289
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 100/207 (48%), Gaps = 44/207 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G++PGD G+DP GL++ P++ +WAMLG AG + PE K G
Sbjct: 56 PAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLIN 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 200
PE W+ D YF + + + E +L E R + G +
Sbjct: 116 APE--WY-------DAGKSTYFASSSTL-----FVVEFILFHYVEIRRWQDIKEPGCVNQ 161
Query: 201 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
D + +PG F+PL A + K KEI NGRLAM A LGF +Q V
Sbjct: 162 DPIFKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKEIANGRLAMLAYLGFSVQHAV 217
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISG 275
TG+GP++NL +HLSDP+ N ++ SG
Sbjct: 218 TGKGPLDNLFQHLSDPWHNTIIQTFSG 244
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 130/302 (43%), Gaps = 85/302 (28%)
Query: 30 VRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLL 89
R + +SN S F F KKA+P K+K V DR ++ P
Sbjct: 16 TRVVSDISSNSSRFTARFGFGTKKASP-KKAKTVI-------------SDRPLWFPG--- 58
Query: 90 DRSEIPEYLTGEVPGDYGYDP--------------------------------------- 110
++ PEYL G + GDYG+DP
Sbjct: 59 --AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDP 116
Query: 111 -----------FGLSKKPDD---FSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 156
FGL + + +WAML G I E W G +
Sbjct: 117 KSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG--------VTWQDAGKV 168
Query: 157 -LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGL 214
L+DG++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG F DPLGL
Sbjct: 169 ELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGL 225
Query: 215 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
A DP + A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP ++ S
Sbjct: 226 ASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285
Query: 275 GN 276
+
Sbjct: 286 SS 287
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 101/207 (48%), Gaps = 38/207 (18%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGA 142
+ P YL G + GD G+DP L++ P+D +WAMLG AG +IPE K G
Sbjct: 54 QSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 113
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLED 201
PE W+ D YF + + ++ ++ V + + I N G +D
Sbjct: 114 LNAPE--WY-------DAGKETYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQD 162
Query: 202 KL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
+ +PG F+PL A + K KE+ NGRLAM A LGF +Q VT
Sbjct: 163 PIFKSYSLPPHECGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVT 218
Query: 250 GEGPVENLAKHLSDPFANNLLTVISGN 276
G+GP ENL +HL+DP+ N ++ ISG
Sbjct: 219 GKGPFENLQQHLADPWHNTIIQTISGQ 245
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 107/244 (43%), Gaps = 55/244 (22%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
+ KAA P ++ + V E W+ + P +L G +P D+G+
Sbjct: 50 LRQSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGF 96
Query: 109 DPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 158
DP GL P+ +WAMLGAAG IPE K G P W+ G
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGEQ-- 152
Query: 159 DGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDK 202
YF + +V E++ +G AE R N L D
Sbjct: 153 -----EYFTDKTTLFVV-----EMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDV 202
Query: 203 LHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 260
+PGG FDPLG P++ L+ KEIKNGRLAM A++G + QA TG GP++NL H
Sbjct: 203 GYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAH 262
Query: 261 LSDP 264
L+DP
Sbjct: 263 LADP 266
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 110/227 (48%), Gaps = 46/227 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFII-------------- 133
PE+L G + GDYG+DPFGL K D + AG +I
Sbjct: 66 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 125
Query: 134 ---PEAF--NKFG------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
E F +F A G +V + TG D + +Y G+ +
Sbjct: 126 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 185
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E+++VG E+ R LD E +L+PGG FDPLGLA DP++ A L++ EI
Sbjct: 186 PFSISTLIWIEVLVVGYIEFQRNAE-LDSEKRLYPGGKYFDPLGLAADPEKRAQLQLAEI 244
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
K+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 245 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 291
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 109/214 (50%), Gaps = 44/214 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KW-----------AMLGAAGFIIPEAFNKF 140
YL G +PGD+G++P GLS P+ +W AM+G G I PEA K
Sbjct: 60 YLDGTLPGDFGFNPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 118
Query: 141 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 196
G A+ WF+ GA+ G T Y+ P L + E+ L+G AE+ R+ +
Sbjct: 119 GLVPPETAIPWFQAGAIPPAG-TYQYWAD--PYTLF---VFEMALIGFAEHRRLQDWYNP 172
Query: 197 --------LDLE-------DKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGRLAMFAM 239
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A
Sbjct: 173 GSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLAF 232
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LG LQA TG GP +NL HLSDP NN+LT +
Sbjct: 233 LGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 266
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 105/209 (50%), Gaps = 42/209 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GDYG+DP GL + P+ +++AMLG AG + + G
Sbjct: 70 PPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTDLLRVTGIRK 129
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 198
P VW++ GA+ + + ++ +++ +G AE R + +
Sbjct: 130 LP--VWYEAGAVKYEFASTRTL-----------LVVQLLWMGYAETRRYMDYVSPGSQNK 176
Query: 199 ------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 245
+E L +PGGP +P GLAKD K+KEIKNGRLAM AMLG F+Q
Sbjct: 177 EGSFFGMEAALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMVAMLGIFVQ 236
Query: 246 AYVTGEGPVENLAKHLSDPFANNLLTVIS 274
A VT GP++NL +HLSDP+ ++ +S
Sbjct: 237 AAVTHTGPIDNLLEHLSDPWHKTIIQTLS 265
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 110/214 (51%), Gaps = 44/214 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G + GD+G+DP GL++ P ++AMLG G ++ + G +
Sbjct: 64 PPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISK 123
Query: 145 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD----- 198
P VWF+ GA+ D NT F + ++VL+G E R + +
Sbjct: 124 IP--VWFEAGAVKYDFANTKTLF------------LVQLVLMGFVETKRYMDFVSPGSQA 169
Query: 199 -------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
LE L +PGGP +PLGLAKD + K+KEIKNGRLAM AMLG F+
Sbjct: 170 KEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFV 229
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAE 278
QA VT GP++NL +HLS+P+ ++ ++ ++
Sbjct: 230 QASVTHVGPIDNLVEHLSNPWHKTIIQTLANSSS 263
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 38/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GD G+DP GL++ P++ +WAMLG AG ++PE F K G
Sbjct: 64 PGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
PE W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 124 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 172
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 173 FKQYSLPPNEVGYPGGIFNPLNFAPTVEA----KEKELANGRLAMLAFLGFVIQHNVTGK 228
Query: 252 GPVENLAKHLSDPFANNLLTVIS 274
GP ENL +HLSDP+ N ++ +S
Sbjct: 229 GPFENLLQHLSDPWHNTIVQTLS 251
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 111/226 (49%), Gaps = 56/226 (24%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------DFSKWAMLGA 128
DR+++ P G++ PEYL GE+ GDYG+DP GL P ++WAMLG
Sbjct: 19 DRKLWAP-GVV----APEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 73
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIV 183
AG ++ E P+ +++ G +N+P IN+ + E +
Sbjct: 74 AGVLVQEIVK-------PDVYFYEAG-----------LPQNLPEPFTNINMGGLLAWEFI 115
Query: 184 LVGGAEYYRITN----GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVK 227
L+ E R + G ED + +PGG FDP G +K F L+ K
Sbjct: 116 LMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSKG--DFKELQTK 173
Query: 228 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
EIKNGRLAM A + F LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 174 EIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 219
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 99/206 (48%), Gaps = 40/206 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFG 141
S P +L G +P DYG+DP L P++ +WAMLG AG + PE K G
Sbjct: 49 SPAPAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIG 108
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL 197
P W G DG Y+ P+ V ++ ++ AE R + G
Sbjct: 109 MADLPN--WIDAGKW--DG----YWLGAGPLFFV-----QMAMMNWAEVRRWQDMKAPGT 155
Query: 198 DLEDKL-------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
ED L +P G FDP+G AKDP + LK KEI NGRLAM A++G F
Sbjct: 156 MNEDPLTGANKGDTNTDVGYPKGLFDPMGYAKDPKKAEELKRKEIANGRLAMVAIVGCFA 215
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLL 270
QA TG GPV+NL HL+DP NN+
Sbjct: 216 QAISTGTGPVDNLFTHLADPGHNNIF 241
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 108/202 (53%), Gaps = 41/202 (20%)
Query: 107 GYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEAV-W 150
G+DP GLS +P + ++AMLGAAG I PE F K G A+ W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 151 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDL 199
F+TG + G + Y+ P L + E+ L+G AE+ R+ + L L
Sbjct: 61 FQTGVIPPAG-SYTYWAD--PYTLF---VFEMALMGFAEHRRLQDWYNPGSMGKQYFLGL 114
Query: 200 E-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
E D +PGGPF +PLG KD LK+KEIKNGRLAM A+LG+F+Q VTG
Sbjct: 115 EKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 252 GPVENLAKHLSDPFANNLLTVI 273
GP +NL HL+DP +NN+LT +
Sbjct: 175 GPFQNLLDHLADPVSNNVLTSL 196
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 48/229 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKWAM--------LGAAGFIIPEAFN-------- 138
PEYL G + GDYG+DP GL K P ++ ++ + AG II F
Sbjct: 61 PEYLDGSLVGDYGFDPIGLGK-PAEYLQYDLDSLDQNLAKNVAGDIIGTRFEPGEVKSTP 119
Query: 139 ------KFG-----------------ANCGPEAVWFKTGALLLDG------NTLNYFGKN 169
FG A G +V + TG D N +Y G+
Sbjct: 120 FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELENGSSYLGQP 179
Query: 170 IPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKE 228
+P ++ + E++L+G E+ R LD E +L+PGG FDPLGLA DP++ L++ E
Sbjct: 180 LPFSMTTLIWIEVLLIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLASDPEKKERLQLAE 238
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
IK+ RLAM LGF +QA TG+GP+ N A HLSDP + S ++
Sbjct: 239 IKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFSSSS 287
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 99/207 (47%), Gaps = 44/207 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P+ +WAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 200
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 201 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
D + +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPVFKNYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISG 275
TG+GP ENL +HLSDP+ N ++ G
Sbjct: 224 TGKGPFENLLQHLSDPWHNTIIQTFQG 250
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 109/211 (51%), Gaps = 42/211 (19%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GDYG+DP GL + P+ +++AMLG G ++ + G +
Sbjct: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 126
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 195
P VWF+ GA+ K N +I +++L+G AE R +
Sbjct: 127 IP--VWFEAGAV-----------KYEFTNTQTLIIVQLLLMGFAETKRYMDFIGPGSQAK 173
Query: 196 -----GLDLE----DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 245
GL+ + +PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+Q
Sbjct: 174 EGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQ 233
Query: 246 AYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
A VT GP++NL +HLS+P+ ++ ++ +
Sbjct: 234 ASVTHVGPIDNLVEHLSNPWHKTVIQTLASS 264
>gi|339716018|gb|AEJ88256.1| putative light harvesting chlorophyll a/b-binding protein [Wolffia
australiana]
Length = 92
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 191 YRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
YR+ G ++ D L+PGG FDPL LA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 1 YRVAGGPLGEVVDPLYPGGSFDPLNLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 60
Query: 249 TGEGPVENLAKHLSDPFANN 268
TG+GP+ENLA HL+DP NN
Sbjct: 61 TGKGPLENLADHLADPVNNN 80
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 119/244 (48%), Gaps = 51/244 (20%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGF 131
DR ++ P ++ P++L G + GDYG+DPFGL K D + AG
Sbjct: 51 DRPLWFPG-----AKSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGD 105
Query: 132 II----PEAFNK----------FG-----------------ANCGPEAVWFKTGALLLDG 160
+I EA K FG A G +V + TG D
Sbjct: 106 VIGTRTEEAAPKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDA 165
Query: 161 NTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLG 213
+ +Y G+ +P ++ + E++++G E+ R LD E +L+PGG FDPLG
Sbjct: 166 GKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLG 224
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++
Sbjct: 225 LASDPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 284
Query: 274 SGNA 277
S ++
Sbjct: 285 SSSS 288
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 116/243 (47%), Gaps = 51/243 (20%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGF 131
DR ++ P ++ PEYL G + GDYG+DPFGL K D + AG
Sbjct: 51 DRPLWFP-----GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGD 105
Query: 132 II---PEAFN-----------KFG-----------------ANCGPEAVWFKTGALLLDG 160
+I EA + FG A G V + TG D
Sbjct: 106 VIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDA 165
Query: 161 NTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLG 213
+ +Y G+ +P ++ + E+++VG E+ R LD E +L+PGG FDPLG
Sbjct: 166 GKVELVDGSSYLGQPLPFSISTLIWIEVLVVGYIEFQRNAE-LDSEKRLYPGGKFFDPLG 224
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LA DP++ A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP ++
Sbjct: 225 LASDPEKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 284
Query: 274 SGN 276
S +
Sbjct: 285 SSS 287
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 107/221 (48%), Gaps = 46/221 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFIIPEAFNK-------- 139
PE+L G + GDYG+DPFGL K D + AG +I F
Sbjct: 63 PEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGGEVKSTPF 122
Query: 140 ------FG-----------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
FG A G AV TG D + +Y G+ +
Sbjct: 123 QPYTEVFGLQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVELIEGSSYLGQPL 182
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E++++G E+ R LD E +L+PGG FDPLGLA DP++ A+L++ EI
Sbjct: 183 PFSMTTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGKFFDPLGLAADPEKKAVLQLAEI 241
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 270
K+ RLAM LGF +QA VTG+GP+ N A HLSDP ++
Sbjct: 242 KHARLAMIGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 282
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 124/273 (45%), Gaps = 64/273 (23%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K KAA P K ++S DR ++ P + P+YL G + GDYG+DP
Sbjct: 37 KPKAAVPKKVAKTSISS-----------DRPLWFPGAV-----APDYLDGSLVGDYGFDP 80
Query: 111 FGLSKKPDDFSKWAM--------LGAAGFIIPEAFNK--------------FG------- 141
FGL KP ++ ++ + AG II F FG
Sbjct: 81 FGLG-KPVEYLQFELDSLDQNLAKNEAGGIIGTRFESSDVKSTPLQPYSEVFGLQRFREC 139
Query: 142 ----------ANCGPEAVWFKTGALLLDGNTL------NYFGKNIPINLVFAVIAEIVLV 185
A G V + TG D + +Y G+ +P + + E++++
Sbjct: 140 ELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQPLPFTISTLIWIEVLVI 199
Query: 186 GGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
G E+ R LD E +L+PGG FDPL LA DP++ L++ EIK+ RLAM A LGF +
Sbjct: 200 GYIEFQRNAE-LDPEKRLYPGGSYFDPLALAADPEKKERLQLAEIKHARLAMVAFLGFAV 258
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
QA TG+GP+ N A HLSDP + G++
Sbjct: 259 QAAATGKGPLNNWATHLSDPLHTTIFDTFGGSS 291
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 100/192 (52%), Gaps = 45/192 (23%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKW----------AMLGAAGFIIPEAFNKFGANC 144
P++LTGE PGD G+DP GLS P F + AMLG G I+PE F G
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGP-- 224
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDL 199
WF L G L G + VIA + EY+R NG D
Sbjct: 225 -----WFD-----LSGFNLTRLGL-----VALQVIAPL------EYWRGNRGFSWNGDDG 263
Query: 200 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 259
D+ +PG FDPL L D K+KEIKNGRLAM AMLG +Q+++TG+ P+ NL++
Sbjct: 264 PDQSYPG--FDPLRLTDDET-----KLKEIKNGRLAMTAMLGLEVQSHITGKSPLVNLSE 316
Query: 260 HLSDPFANNLLT 271
HLS+P + N+LT
Sbjct: 317 HLSNPASVNILT 328
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 91/195 (46%), Gaps = 45/195 (23%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YLTGE GD G+DP GL+ P F + +ML G ++PE
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGN----- 782
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDL 199
WF+ + D N F AV+A + +V EY+R + N +
Sbjct: 783 ---GAWFQ----IWDKVDFNRF----------AVVA-LQVVAPLEYWRGNGGFLWNDEET 824
Query: 200 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 259
D+ +PG FDPL L + K EIKNGRLAM M G +Q++VTG+ P+ NL
Sbjct: 825 VDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNLID 877
Query: 260 HLSDPFANNLLTVIS 274
HLS P N+ T +S
Sbjct: 878 HLSHPLTANIGTNLS 892
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 44/194 (22%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKW----------AMLGAAGFIIPEAFNKFG 141
+E P +LTGE P D G+DP L+ PD +++ AML G I+PE K
Sbjct: 541 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 598
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE- 200
WF+ G + DG L + + + EY+R G + +
Sbjct: 599 ------GAWFEAGDSV-DGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQK 637
Query: 201 ---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
D+ +PG FDPL L D + E+KNGRLA+ A+ G Q TGE P+ NL
Sbjct: 638 GELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANL 690
Query: 258 AKHLSDPFANNLLT 271
+ HL++P N+ T
Sbjct: 691 SAHLANPIGANITT 704
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 91/209 (43%), Gaps = 52/209 (24%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKW----------AMLGA 128
+R ++ P L P +L GE GD G+DP GL+ PD F + AML
Sbjct: 348 ERPLWFPNTL-----APSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAV 402
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 188
G ++P+ K +W++ +N I L E+ + A
Sbjct: 403 VGALVPDYLGK--------GIWYEAA-------------QNAGIGL-----KEVAIFTAA 436
Query: 189 E-YYRITNGLDLED---KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
+ + G+ ++PG FDPL L D K EIKNGRLA+ A+LGF +
Sbjct: 437 YGVFEVARGVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEV 489
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVI 273
Q +V G P+ NLA+HL P N+ I
Sbjct: 490 QRHVVGGSPLANLAEHLQQPLQRNIADSI 518
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 39/140 (27%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKW----------AMLGAAGFIIPEAFNKFG 141
+E P +LTGE P D G+DP L+ PD +++ AML G I+PE K
Sbjct: 915 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 972
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE- 200
WF+ G +DG L + + + EY+R G + +
Sbjct: 973 ------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQK 1011
Query: 201 ---DKLHPGGPFDPLGLAKD 217
D+ +PG FDPL L D
Sbjct: 1012 GELDRSYPG--FDPLNLTTD 1029
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 209 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
FDPL LA DPD +A ++V E+ +GRLAM M+G +
Sbjct: 931 FDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIV 966
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 109/221 (49%), Gaps = 43/221 (19%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAA 129
R+ + G L S+ P YL ++PG YG+DP L + P S++AM A
Sbjct: 30 RVCMKAGNWLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVA 88
Query: 130 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 189
G +IPE FGA P VW++ G + + IP N + A+ EI E
Sbjct: 89 GILIPEVLKAFGAVNLP--VWYEAGKYAQESSP-------IPFNTLIAL--EIFAFNFVE 137
Query: 190 YYRITN--------------GLD-----LEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 230
R + GL+ + +PGG FDPLGL+K P + +K++EIK
Sbjct: 138 IKRWQDFKKPGSQGEEGSFVGLEGFFKGTGENGYPGGVFDPLGLSKGPG-YEAMKLREIK 196
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
NGRLAM A +GF Q TG+GP+ENL HLS+P ANN T
Sbjct: 197 NGRLAMLAFIGFASQYLATGKGPIENLLDHLSNPLANNFTT 237
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 102/205 (49%), Gaps = 41/205 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGL----------SKKPDDFSKWAMLGAAGFIIPEAF-NKFGAN 143
P++L G +PGDYG+DP GL + ++WAMLG G PE N F
Sbjct: 52 PKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEG 111
Query: 144 CGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDL 199
P W + A L DG Y N +F V ++ ++ AE R + G
Sbjct: 112 AMPN--WAE--APLWDG----YMASP---NTLFVV--QMFMMNWAEVRRWQDMKNPGTMN 158
Query: 200 EDKL-------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
ED L +P G FDP+G+AKDP++ +LKVKEI NGRLAM A++G +Q
Sbjct: 159 EDPLTGANKGDTNTDVGYPKGLFDPMGMAKDPEKVKVLKVKEIANGRLAMVAVMGCIIQN 218
Query: 247 YVTGEGPVENLAKHLSDPFANNLLT 271
TG GP+ NL HL+DP N + T
Sbjct: 219 EATGVGPIANLKAHLADPAHNTIFT 243
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 132/299 (44%), Gaps = 65/299 (21%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAV--SPV 68
A+++ AK +G+ SS+ + ++ S F AL K AA ++ +P
Sbjct: 2 ASAVCAKPCVGSIAATSSSKFETNVASTKASFFSGRALRMTKVAAYTNGDMTISAVAAPQ 61
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK------PDDF-- 120
NE R ++ P S+ PE+L G +PGD+G+DP GL + P+
Sbjct: 62 NE---------RPLWFPG-----SQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKW 107
Query: 121 --------SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 172
+WAMLGAAG IPEA K G P W G +YF +
Sbjct: 108 FVQAELVHCRWAMLGAAGIFIPEALTKMGILNTPS--WTVAG-------DADYFTDKTTL 158
Query: 173 NLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLA 215
++ E++L AE R N L D +PGG FDPLG
Sbjct: 159 FVI-----ELILFAWAEGRRWADIVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWG 213
Query: 216 KDPDQFAL--LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
+ D L L+ +EIKNGRLAM A+LG +QA T GP++NL HL DP N + +
Sbjct: 214 QTSDAAKLKDLRTREIKNGRLAMLAVLGAIVQANYTHTGPIDNLVAHLVDPGHNTIFAL 272
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 42/211 (19%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GDYG+DP GL + P+ +++AMLG G ++ + G +
Sbjct: 14 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 73
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 198
P VWF+ GA+ K N +I +++L+G AE R + +
Sbjct: 74 IP--VWFEAGAV-----------KYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAK 120
Query: 199 ------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 245
LE +PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+Q
Sbjct: 121 EGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQ 180
Query: 246 AYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
A VT GP++NL +HLS+P+ ++ ++ +
Sbjct: 181 ASVTHVGPIDNLVEHLSNPWHKTVIQTLASS 211
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 42/211 (19%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GD+G+DP GL + P +++AM G AG + + G
Sbjct: 67 PPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVTGIRK 126
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 198
P VW++ GA+ + + ++ +++L+G AE R + +
Sbjct: 127 LP--VWYEAGAVKFEFASTRTL-----------IVVQLLLMGFAETKRYMDFVSPGSQAK 173
Query: 199 ------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 245
LE L +PGGP +PLGLA+D + + K+KEIKNGRLAM AM+G F+Q
Sbjct: 174 EGSFFGLESALEGLEPGYPGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMVAMVGIFVQ 233
Query: 246 AYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
A VT GP++NL +HLS+P+ ++ ++ +
Sbjct: 234 AAVTHAGPIDNLIEHLSNPWHRTIIQTLANS 264
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 99/207 (47%), Gaps = 44/207 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P+ +WAMLG AG +IPE G
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 121
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 200
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 201 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
D L +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPLFKQYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISG 275
TG+GP +NL +HLSDP+ N ++ + G
Sbjct: 224 TGKGPFDNLLQHLSDPWHNTIIQTLQG 250
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 103/215 (47%), Gaps = 36/215 (16%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------- 120
V E WY IF LL + P+YL G + GDYG+DP GL P+
Sbjct: 32 VFAERKLWYEFSFSIFF---LLPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAE 88
Query: 121 ---SKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 177
++WAM+ AG EA G ++ W+ G +G PIN A
Sbjct: 89 LMNARWAMMAVAGICTTEAL-------GIQSKWYMAGQ--------EDYG--FPINAQLA 131
Query: 178 VIAEIVLVGGAEYYRITNGLDL-EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 236
V+ +G E RIT L + ++ PFDPLG+ D D +K+KEIKNGR AM
Sbjct: 132 VL--FPTMGFLETKRITGWLATGKSGINETFPFDPLGMGADSDS---MKLKEIKNGRAAM 186
Query: 237 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
A +G +QA V EGP+ L H+++PF NNL T
Sbjct: 187 IAFVGICVQALVLREGPLAALQDHVANPFGNNLAT 221
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 38/205 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP L++ P++ +WAMLG AG ++PE F + G
Sbjct: 63 PAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIIN 122
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 VPK--WY-------DAGKQEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPNEVGYPGGIFNPLNFAPTAEA----KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 252 GPVENLAKHLSDPFANNLLTVISGN 276
GP +NL +HLSDP+ N ++ GN
Sbjct: 228 GPFDNLLQHLSDPWHNTIIQTFGGN 252
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 101/207 (48%), Gaps = 38/207 (18%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGA 142
+ P YL G + GD G+DP L++ P+D +WAMLG AG +IPE K G
Sbjct: 37 QSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 96
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLED 201
PE W+ D YF + + ++ ++ V + + I N G +D
Sbjct: 97 LNAPE--WY-------DAGKETYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQD 145
Query: 202 KL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
+ +PG F+PL A + K KE+ NGRLAM A LGF +Q VT
Sbjct: 146 PIFKSYSLPPHECGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVT 201
Query: 250 GEGPVENLAKHLSDPFANNLLTVISGN 276
G+GP ENL +HL+DP+ N ++ ISG
Sbjct: 202 GKGPFENLQQHLADPWHNTIIQTISGQ 228
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 100/207 (48%), Gaps = 44/207 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 200
P+ W+ D YF + + + E +L E R + G +
Sbjct: 116 APQ--WY-------DAGKATYFASSSTL-----FVIEFILFHSVEIRRWQDIKNPGCVNQ 161
Query: 201 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
D + +PG F+PL +P A K KE+ NGRLAM A LGF +Q V
Sbjct: 162 DPIFKSYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNV 217
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISG 275
T +GP +NL +HLSDP+ N ++ +SG
Sbjct: 218 TQKGPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ +WAMLG AG +IPE K G
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 195
P+ W+ D YF + + ++ ++ V + + I N
Sbjct: 116 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 164
Query: 196 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
L + +PG F+PL A + K KE+ NGRLAM A L F +Q VTG+
Sbjct: 165 FKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLAFLIQHNVTGK 220
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 99/192 (51%), Gaps = 45/192 (23%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKW----------AMLGAAGFIIPEAFNKFGANC 144
P++LTGE PGD G+DP GLSK P F + AMLG G I+PE F G
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGP-- 224
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT-----NGLDL 199
WF + NL + + ++ EY+R NG D
Sbjct: 225 -----WFDLSSF----------------NLTRLGLVALQVIAPLEYWRGNRGFSWNGDDG 263
Query: 200 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 259
D+ +PG FDPL L + K+KEIKNGRLAM AMLG +Q+++TG+ P+ NL++
Sbjct: 264 PDQSYPG--FDPLRLTDEET-----KLKEIKNGRLAMTAMLGLEVQSHITGKSPLVNLSE 316
Query: 260 HLSDPFANNLLT 271
HLS+P + N+LT
Sbjct: 317 HLSNPASVNILT 328
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 91/195 (46%), Gaps = 45/195 (23%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YLTGE GD G+DP GL+ P F + +ML G ++PE
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGN----- 782
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDL 199
WF+ + D N F AV+A + +V EY+R + N +
Sbjct: 783 ---GAWFQ----IWDKVDFNRF----------AVVA-LQVVAPLEYWRGNGGFLWNDEET 824
Query: 200 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 259
D+ +PG FDPL L + K EIKNGRLAM M G +Q++VTG+ P+ NL
Sbjct: 825 IDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNLID 877
Query: 260 HLSDPFANNLLTVIS 274
HLS P N+ T +S
Sbjct: 878 HLSHPLTANIGTNLS 892
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 88/194 (45%), Gaps = 44/194 (22%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKW----------AMLGAAGFIIPEAFNKFG 141
+E P +LTGE P D G+DP L+ PD +++ AML G I+PE K
Sbjct: 915 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 972
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE- 200
WF+ G + DG L + + + EY+R G + +
Sbjct: 973 ------GAWFEAGDSV-DGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQK 1011
Query: 201 ---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
D+ +PG FDPL L D + E+KNGRLA+ A+ G Q TGE P+ NL
Sbjct: 1012 GDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANL 1064
Query: 258 AKHLSDPFANNLLT 271
HL++P N+ T
Sbjct: 1065 TAHLANPLGANITT 1078
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 44/194 (22%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKW----------AMLGAAGFIIPEAFNKFG 141
+E P +LTGE P D G+DP L+ PD +++ AML G I+PE K
Sbjct: 541 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 598
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE- 200
WF+ G + DG L + + + EY+R G + +
Sbjct: 599 ------GAWFEAGDSV-DGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQK 637
Query: 201 ---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
D+ +PG FDPL L D + E+KNGRLA+ A+ G Q TGE P+ NL
Sbjct: 638 GDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANL 690
Query: 258 AKHLSDPFANNLLT 271
+ HL++P N+ T
Sbjct: 691 SAHLANPIGANIAT 704
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 92/209 (44%), Gaps = 52/209 (24%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKW----------AMLGA 128
+R ++ P L P +LTGE GD G+DP GL+ PD F + AML
Sbjct: 348 ERPLWFPNTL-----APSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAI 402
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 188
G ++P+ K +W++ +N I L E+ + A
Sbjct: 403 VGALVPDYLGK--------GIWYEAA-------------QNAGIGL-----KEVAIFTAA 436
Query: 189 E-YYRITNGLDLED---KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
+ + G+ ++PG FDPL L D K EIKNGRLA+ A+LGF +
Sbjct: 437 YGVFEVARGVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEV 489
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVI 273
Q +V G P+ NLA HL P +N+ I
Sbjct: 490 QRHVVGGSPLANLADHLQQPLQHNIADSI 518
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 96/204 (47%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GD G+DP L++ P D +WAMLG AG +IPE K G
Sbjct: 58 PAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGLLS 117
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 195
PE W+ D YF + + +V ++ V + + I N
Sbjct: 118 APE--WY-------DAGKETYFASSSTLFVVEFILFHYVEI--RRWQDIKNPGSVNQDPI 166
Query: 196 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
L D +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 167 FKSYSLPDHDCGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVTGK 222
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP ENL +HL+DP+ N ++ SG
Sbjct: 223 GPFENLMQHLADPWHNTIIQTFSG 246
>gi|302854499|ref|XP_002958757.1| hypothetical protein VOLCADRAFT_108301 [Volvox carteri f.
nagariensis]
gi|300255932|gb|EFJ40213.1| hypothetical protein VOLCADRAFT_108301 [Volvox carteri f.
nagariensis]
Length = 112
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 62/83 (74%), Gaps = 2/83 (2%)
Query: 188 AEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 245
A YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+Q
Sbjct: 18 AHGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQ 77
Query: 246 AYVTGEGPVENLAKHLSDPFANN 268
A VTG+GP+ENL HL++P NN
Sbjct: 78 AIVTGKGPIENLNDHLANPAVNN 100
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 104/223 (46%), Gaps = 48/223 (21%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGA 128
DR ++ P S+ PE+L G +PGD+G+DP GL P+ +WAMLGA
Sbjct: 1 DRPLWFPG-----SKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 55
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 188
AG IPEA K G P W G YF P L + E++L A
Sbjct: 56 AGIFIPEALTKAGILNTPS--WNVAG-------DQQYFAD--PTTLF---VIELILFAWA 101
Query: 189 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGL--AKDPDQFALLKVKEI 229
E R N L D +PGG FDPLG KD + L+ KEI
Sbjct: 102 EGRRWADIVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEI 161
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 272
KNGRLAM A+LG +QA T GP++NL HL+DP N + +
Sbjct: 162 KNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFAL 204
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ ++WAMLG AG ++PE K G
Sbjct: 56 PAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGMLLPEVLTKIGIIN 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P +W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 116 AP--LWY-------DAGKSTYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 164
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PG F+PL +P A K KE+ NGRLAM A L F +Q +TG+
Sbjct: 165 FKNYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLAFMVQHGITGK 220
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP ENL +HLSDP+ N ++ +SG
Sbjct: 221 GPFENLLQHLSDPWHNTIIQTLSG 244
>gi|351066141|gb|AEQ39045.1| putative light-harvesting complex II chlorophyll-a/b binding
protein [Wolffia arrhiza]
Length = 84
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 60/71 (84%)
Query: 198 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
++ D L+PGG FDPL LA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 2 EVTDPLYPGGSFDPLNLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 61
Query: 258 AKHLSDPFANN 268
A HL+DP NN
Sbjct: 62 ADHLADPVNNN 72
>gi|302854487|ref|XP_002958751.1| hypothetical protein VOLCADRAFT_84624 [Volvox carteri f.
nagariensis]
gi|302854497|ref|XP_002958756.1| hypothetical protein VOLCADRAFT_78096 [Volvox carteri f.
nagariensis]
gi|300255926|gb|EFJ40207.1| hypothetical protein VOLCADRAFT_84624 [Volvox carteri f.
nagariensis]
gi|300255931|gb|EFJ40212.1| hypothetical protein VOLCADRAFT_78096 [Volvox carteri f.
nagariensis]
Length = 98
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 185 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 1 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 60
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANN 268
F+QA VTG+GP+ENL HL++P NN
Sbjct: 61 FVQAIVTGKGPIENLNDHLANPAVNN 86
>gi|914284|gb|AAB34068.1| light-harvesting complex b type 3, Lhcb3 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 132 aa]
Length = 132
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 4/98 (4%)
Query: 175 VFAVIA-EIVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIK 230
+ AV+ +++L+G E +RI G+ L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 23 ILAVLGFQVILMGLVEGFRINGLPGVGEGGDLYPGGQYFDPLGLADDPDTFAELKVKEVK 82
Query: 231 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 268
NGRLAMF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 83 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 120
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 99/207 (47%), Gaps = 44/207 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P+ +WAMLG AG +IPE G
Sbjct: 55 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 114
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 200
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 115 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 160
Query: 201 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
D L +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 161 DPLFKQYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 216
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISG 275
TG+GP +NL +HLSDP+ N ++ + G
Sbjct: 217 TGKGPFDNLLQHLSDPWHNTIIQTLQG 243
>gi|302839735|ref|XP_002951424.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
gi|300263399|gb|EFJ47600.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
Length = 317
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 121/273 (44%), Gaps = 72/273 (26%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL-LDRSEIPEYLTGEV 102
KP A + K AP A +K VA S Y R + + L L + PE+L G +
Sbjct: 49 KPKAGTATTKPAPKATTKKVASSSGTRSGGVGY----RKYQGDALWLPNTVRPEWLDGSL 104
Query: 103 PGDYGYDPFGLSK------------------------------KPDDFS----------- 121
PGD G+DP GL+K PD+ S
Sbjct: 105 PGDRGFDPLGLAKPSEFVVIGVDENDQNAAKNNKGSVEAVVTATPDEVSAENRLAPYSEV 164
Query: 122 --------------KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
+WAML G ++ EA W G + LDG + Y G
Sbjct: 165 FGLARFRECELIHGRWAMLACLGCLVAEATTGVS--------WVDAGKVELDGAS--YAG 214
Query: 168 KNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKV 226
++P ++ + E++LVGGAE YR T + E + +PGG FDPL LA + ++ A LK
Sbjct: 215 LSLPFSITQLIWIEVILVGGAEIYRNTE-TNPEKRCYPGGFFDPLKLASEDEERAFRLKT 273
Query: 227 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 259
EIK+ RLAM + G+ +QA+ TGEG + +LAK
Sbjct: 274 AEIKHARLAMVSFFGYSVQAFTTGEGALGSLAK 306
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 51/243 (20%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGF 131
DR ++ P + P++L G + GDYG+DPFGL K D + AG
Sbjct: 54 DRPVWYPGAI-----SPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGD 108
Query: 132 II-----------------PEAF--NKFG------------ANCGPEAVWFKTGALLLDG 160
+I E F +F A G +V + TG D
Sbjct: 109 VIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDA 168
Query: 161 NTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLG 213
+ +Y G+ +P ++ + E++++G E+ R LD E +L+PGG FDPLG
Sbjct: 169 GKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLG 227
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++
Sbjct: 228 LAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
Query: 274 SGN 276
S +
Sbjct: 288 SSS 290
>gi|375152320|gb|AFA36618.1| chlorophyll a/b binding protein, partial [Lolium perenne]
Length = 91
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 60/71 (84%)
Query: 198 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 257
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 9 EIVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 68
Query: 258 AKHLSDPFANN 268
A HL+DP NN
Sbjct: 69 ADHLADPVNNN 79
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAA 129
R+ + G L S+ P +L ++PG+YG+DP L K+P +WAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 130 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 189
G + E W+ ++G +FG +P +L + E V + AE
Sbjct: 91 GSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 142
Query: 190 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q T
Sbjct: 143 GQRG----DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAAT 198
Query: 250 GEGPVENLA 258
G+GP+ A
Sbjct: 199 GKGPIAAWA 207
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + ++ I N G +D +
Sbjct: 116 APQ--WY-------DAGKATYFASSNTLFVIEFILFHYVEI--RQWQDIKNPGCVNQDPI 164
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +
Sbjct: 165 FKSYRLPSDECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 110/227 (48%), Gaps = 46/227 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFII-------------- 133
P++L G + GDYG+DPFGL K D + AG +I
Sbjct: 65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124
Query: 134 ---PEAF--NKFG------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
E F +F A G +V + TG D + +Y G+ +
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 184
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E++++G E+ R LD E +L+PGG FDPLGLA DP++ A L++ EI
Sbjct: 185 PFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEI 243
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
K+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 244 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ +WAMLG AG +IPE K G
Sbjct: 64 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 123
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 195
P+ W+ D YF + + ++ ++ V + + I N
Sbjct: 124 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 172
Query: 196 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
L + +PG F+PL A + K KE+ NGRLAM A L F +Q VTG+
Sbjct: 173 FKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLAFLIQHNVTGK 228
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP +NL +HLSDP+ N ++ +SG
Sbjct: 229 GPFDNLLQHLSDPWHNTIIQTLSG 252
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 116 APQ--WY-------DAGKATYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 164
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +
Sbjct: 165 FKSYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 108/221 (48%), Gaps = 45/221 (20%)
Query: 96 EYLTGEVPGDYGYDPFGL-------SKKPDDF-------------SKWAMLGAAGFIIPE 135
+YL G +PGDYG+DP GL + F ++WAMLGAAG I PE
Sbjct: 68 KYLDGTLPGDYGFDPLGLLDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIAPE 127
Query: 136 AFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 194
K G AV WF+TG + G +++ P L F E+V + AE R+
Sbjct: 128 ILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWAD--PFTLFFI---EVVAIQFAELKRLQ 182
Query: 195 N-------------GLD-----LEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLA 235
+ GL+ ++ +PGGPF + K + LK+ EIKNGRLA
Sbjct: 183 DYKNPGSQSRQYFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNEIKNGRLA 242
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
M AM G+ QA +TG+GP +NL HL+DP NL+T + G
Sbjct: 243 MLAMFGYGAQAVITGDGPFDNLLAHLADPTGANLITNLGGK 283
>gi|209778997|gb|ACI87809.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 85
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 201 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 260
D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL H
Sbjct: 6 DPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDH 65
Query: 261 LSDPFANN 268
L+DP NN
Sbjct: 66 LADPSTNN 73
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 99/204 (48%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GD G+DP GL++ P++ +WAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 195
P+ W+ D + YF + + +V ++ V + + I N
Sbjct: 119 APQ--WY-------DASKSEYFASSSTLFVVEFILFHYVEI--RRWQDIKNPGSVNQDPI 167
Query: 196 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 168 FKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNVTGK 223
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP +NL +HLSDP+ N ++ SG
Sbjct: 224 GPFDNLLQHLSDPWHNTIIQTFSG 247
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 112/238 (47%), Gaps = 45/238 (18%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-- 121
++S V E L GPDR ++ P + P +L G +PGD+G+DP G +P+
Sbjct: 56 SLSTVCEPL----GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWF 106
Query: 122 --------KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 173
+WAML AG +IPE K+G E W+ G YF P
Sbjct: 107 AQAELMHGRWAMLAVAGILIPEILQKWGFM--EEFSWYTAGER-------EYFAD--PWT 155
Query: 174 LVFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DP 218
L +A + V G + N +D+E + +PGG FD + P
Sbjct: 156 LFVTQMALMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSP 215
Query: 219 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
+ +L+ KEIKNGRLAM A +GF+ Q TG+GP++NL HL+DP N+ + + +
Sbjct: 216 EPVMVLRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTSH 273
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 112/238 (47%), Gaps = 45/238 (18%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-- 121
++S V E L GPDR ++ P + P +L G +PGD+G+DP G +P+
Sbjct: 53 SLSTVCEPL----GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWF 103
Query: 122 --------KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 173
+WAML AG +IPE K+G E W+ G YF P
Sbjct: 104 AQAELMHGRWAMLAVAGILIPEILQKWGFM--EEFSWYTAGER-------EYFAD--PWT 152
Query: 174 LVFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DP 218
L +A + V G + N +D+E + +PGG FD + P
Sbjct: 153 LFVTQMALMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSP 212
Query: 219 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
+ +L+ KEIKNGRLAM A +GF+ Q TG+GP++NL HL+DP N+ + + +
Sbjct: 213 EPVMVLRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTSH 270
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 103/210 (49%), Gaps = 51/210 (24%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P+YL GE+ GDYG+DP GL P ++WAMLG AG ++ E
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEVVK------ 95
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITN---- 195
P+ +++ G +N+P +N+ + E +L+ E R +
Sbjct: 96 -PDVYFYEAG-----------LPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNF 143
Query: 196 GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 243
G ED + +PGG FDPLG +K L+ KEIKNGRLAM A +GF
Sbjct: 144 GSVNEDPIFKGNKVPNPEMGYPGGIFDPLGFSKG--NLKELQTKEIKNGRLAMVAYMGFV 201
Query: 244 LQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 202 LQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 116 APQ--WY-------DAGKATYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 164
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +
Sbjct: 165 FKSYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 112/226 (49%), Gaps = 48/226 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKWAM--------LGAAGFII------------- 133
P++L G + GDYG+DPFGL KP ++ ++ + AG II
Sbjct: 61 PDWLDGSLVGDYGFDPFGLG-KPAEYLQYDLDSLDQNLAKNMAGEIIGTRTEVADVKATP 119
Query: 134 ----PEAF--NKFG------------ANCGPEAVWFKTGALLLDGNTL------NYFGKN 169
E F +F A G V + TG D + +Y G+
Sbjct: 120 FQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQP 179
Query: 170 IPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKE 228
+P ++ + E++++G E+ R LD E +L+PGG FDPLGLA DP++ A L++ E
Sbjct: 180 LPFSMTTLIWIEVLVIGFIEFQRNAE-LDPEKRLYPGGKYFDPLGLAADPEKKATLQLAE 238
Query: 229 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274
IK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ +
Sbjct: 239 IKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFT 284
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 94/202 (46%), Gaps = 39/202 (19%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G +PGDYG+DP L + D ++WAMLG AG PE FG +
Sbjct: 46 PSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELLTMFGVSD 105
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------- 194
P W A +G YF + + V ++ ++ AE R
Sbjct: 106 LPN--WHD--APFYNG----YFASSTTLFTV-----QMFMMNWAEIRRWQDIKNPGSVSE 152
Query: 195 ------NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
N L D +PGG F+P+ K D+ LK KEI NGRLAM A LG F+Q
Sbjct: 153 DPAFPGNKLPAGDVGYPGGIFNPMNYGKSTDELKALKAKEIANGRLAMVAALGCFIQYDH 212
Query: 249 TGEGPVENLAKHLSDPFANNLL 270
TG GPVENL HLS+P NN+
Sbjct: 213 TGVGPVENLTSHLSNPGVNNVF 234
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 106/202 (52%), Gaps = 41/202 (20%)
Query: 107 GYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEAV-W 150
G+DP GLS +P + ++AMLGAAG I PE F K G A+ W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 151 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDL 199
F+TG + G + Y+ P L + E+ L+G AE+ R + L L
Sbjct: 61 FQTGVIPPAG-SYTYWAD--PYTLF---VFEMALMGFAEHRRFQDWYNPGSMGKQYFLGL 114
Query: 200 EDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
E L +PGGPF +PLG KD LK+KEIKNGRLAM A+LG+F+Q VTG
Sbjct: 115 EKGLAGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 252 GPVENLAKHLSDPFANNLLTVI 273
GP +NL HL+DP NN+LT +
Sbjct: 175 GPFQNLLDHLADPVNNNVLTSL 196
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 110/226 (48%), Gaps = 56/226 (24%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------DFSKWAMLGA 128
DR+++ P G++ PEYL G++ GDYG+DP GL P ++WAMLG
Sbjct: 31 DRKLWAP-GVV----APEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 85
Query: 129 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIV 183
AG ++ E P+ +++ G +N+P IN+ + E +
Sbjct: 86 AGVLVQEIVK-------PDVYFYEAG-----------LPQNLPEPFTNINMGGLLAWEFI 127
Query: 184 LVGGAEYYRITN----GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVK 227
L+ E R + G ED + +PGG FDP G +K L+ K
Sbjct: 128 LMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSKG--NLKELQTK 185
Query: 228 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
EIKNGRLAM A + F LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 186 EIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 101/199 (50%), Gaps = 40/199 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P +L G +P DYG+DP L PD + +WAM+G AG ++P K GA
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMN 68
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR------------ 192
P VWF+ G + D ++ +P + + V E + +G E R
Sbjct: 69 VP--VWFEAGKVANDNSS-------VPFSALLMV--EFLAMGFVETKRWYDIKSPGSQGD 117
Query: 193 -----ITNGLDLEDKLHPGGPF-DPLGLAKDPDQ-FALLKVKEIKNGRLAMFAMLGFFLQ 245
IT+ + +PGG F DP G +K ++ + L+VKEI NGRLAM AM+GF+ Q
Sbjct: 118 GSIFGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMVGFWAQ 177
Query: 246 AYVTGEGPVENLAKHLSDP 264
TG+GPV+NL H++DP
Sbjct: 178 YAATGKGPVDNLFDHIADP 196
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 98/204 (48%), Gaps = 38/204 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GD G+DP GL++ P++ +WAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 195
P+ W+ D YF + + +V ++ V + + I N
Sbjct: 119 APQ--WY-------DAGKSEYFASSSTLFVVEFILFHYVEI--RRWQDIKNPGSVNQDPI 167
Query: 196 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 168 FKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNVTGK 223
Query: 252 GPVENLAKHLSDPFANNLLTVISG 275
GP +NL +HLSDP+ N ++ SG
Sbjct: 224 GPFDNLLQHLSDPWHNTIIQTFSG 247
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 104/212 (49%), Gaps = 44/212 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDD---------------FSKWAMLGAAGFIIPEAFNKFG 141
YL G +PGD+G+DP GL + +WAMLGAAG I PE
Sbjct: 57 YLDGTLPGDFGFDPLGLLDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILG--A 114
Query: 142 ANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 196
A PE VW+++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 115 AGLIPEKTNIVWYESGVIPPAGSYDGYWAD--PYTIFFI---EIVAMQFAELRRLQDFRY 169
Query: 197 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 239
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 170 PGSMGKQYFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 229
Query: 240 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 271
LG+ QA +T EGP +NL HL+DP NN+LT
Sbjct: 230 LGYGAQATLTREGPFQNLLDHLADPVNNNILT 261
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 44/213 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC 144
P +L G + GD+G+DP GL + P ++AMLG +G ++ + G +
Sbjct: 60 PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 119
Query: 145 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------- 195
P VW+ GA+ N F I +++L+G E R +
Sbjct: 120 LP--VWYNAGAVEYGFANKRTLF------------IVQLLLMGFVETKRYMDFKSPGSQA 165
Query: 196 ------GLDLEDK----LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
GL+ K +PGGP +PLG+AKD K+KEIKNGRLAM AMLG F+
Sbjct: 166 QEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFV 225
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
QAYVT GP++NL +HLS+P+ ++ +S ++
Sbjct: 226 QAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 258
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 41/203 (20%)
Query: 107 GYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEAV-W 150
G+DP GLS +P + ++AMLGA G I PE F K G A+ W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALPW 60
Query: 151 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDL 199
F+TG + G + Y+ P L + E+ L+G AE+ R+ + L L
Sbjct: 61 FQTGVIPPAG-SYTYWAD--PYTLF---VFEMALMGFAEHRRLQDWYNPGSMGKQYFLGL 114
Query: 200 E-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
E D +PGGPF +PLG KD LK+KEIKNGRLAM A+LG+F+Q VTG
Sbjct: 115 EKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 252 GPVENLAKHLSDPFANNLLTVIS 274
GP +NL HL+DP NN+LT +
Sbjct: 175 GPFQNLLDHLADPVNNNVLTSLK 197
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 98/204 (48%), Gaps = 41/204 (20%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGA 142
+ P++L GE+PGDYG+DP L K+P D +WAMLG AG PE K G
Sbjct: 41 DAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMGI 100
Query: 143 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLD 198
+ P W + NY G +F V +++++ AE R + G
Sbjct: 101 SDLPN--WH---------DAPNYQGYFTDATTLFWV--QMLMMNWAEVRRWQDMRKPGSV 147
Query: 199 LED------KL------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 246
ED KL +PGG FDPLG AK LK KEI NGRLAM A G +Q
Sbjct: 148 NEDPAFSGNKLPSGIVGYPGGIFDPLGYAK--GDLNKLKAKEIANGRLAMVAFAGIMVQY 205
Query: 247 YVTGEGPVENLAKHLSDPFANNLL 270
TG GPV NL H+SDP NN+
Sbjct: 206 DHTGVGPVANLVAHMSDPAHNNVF 229
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 106/202 (52%), Gaps = 41/202 (20%)
Query: 107 GYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEAV-W 150
G+DP GLS +P + ++AMLGA G I PE F K G A+ W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALPW 60
Query: 151 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDL 199
F+TG + G + Y+ P L + E+ L+G AE+ R+ + L L
Sbjct: 61 FQTGVIPPAG-SYTYWAD--PYTLF---VFEMALMGFAEHRRLQDWYNPGSMGKQYFLGL 114
Query: 200 E-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
E D +PGGPF +PLG KD LK+KEIKNGRLAM A+LG+F+Q VTG
Sbjct: 115 EKGFAGSGDPAYPGGPFFNPLGFGKDETSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 252 GPVENLAKHLSDPFANNLLTVI 273
GP +NL HL+DP NN+LT +
Sbjct: 175 GPFQNLLDHLADPVNNNVLTSL 196
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 104/203 (51%), Gaps = 38/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P+YL G +PGD G+DP GL++ P++ +WAMLG AG ++PE F G
Sbjct: 63 PDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 122
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 VPK--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKSYSLPPNKCGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 252 GPVENLAKHLSDPFANNLLTVIS 274
GP +NL +HL DP+ N ++ +S
Sbjct: 228 GPFDNLLQHLFDPWHNTIIQTLS 250
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 109/237 (45%), Gaps = 51/237 (21%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGF 131
DR ++ P ++ PEYL G + GDYG+DPFGL K D + AG
Sbjct: 50 DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGE 104
Query: 132 IIPEAFNK--------------FG-----------------ANCGPEAVWFKTGALLLDG 160
II F FG A G V + TG D
Sbjct: 105 IIGTRFEDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDA 164
Query: 161 NTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLG 213
+ +Y G+ +P + + E++++G E+ R LD E +L+PGG FDPLG
Sbjct: 165 GKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQRNAE-LDPERRLYPGGSYFDPLG 223
Query: 214 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 270
LA DP++ L++ EIK+ RLAM A LGF +QA TG+G + N A HLSDP +
Sbjct: 224 LAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGRLNNWATHLSDPLHTTIF 280
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 100/207 (48%), Gaps = 36/207 (17%)
Query: 96 EYLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKF 140
YL G +PGDYG+DP GLS P + +WAMLG AG + PE
Sbjct: 69 SYLDGSLPGDYGFDPLGLSDPEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPEVLGGL 128
Query: 141 GANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL 197
G P+ VW+K G + G T +Y+ I + A + + A+ Y +
Sbjct: 129 GII--PQETGLVWYKAGMIPAQG-TYDYWANPFTIFWINAALMNFAELRRAQDYWNPGSM 185
Query: 198 DLEDKL-------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
++ + +PGG F+ +G K A ++VKEIKNGRLAM A
Sbjct: 186 GKQELIGWEKMLGGSGEPAYPGGFFNIMGQGKS--DMAKMRVKEIKNGRLAMMACFACGA 243
Query: 245 QAYVTGEGPVENLAKHLSDPFANNLLT 271
QA +TGEGPV+NL H+SDPF +NLL
Sbjct: 244 QAVMTGEGPVKNLIDHVSDPFGHNLLV 270
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 97/205 (47%), Gaps = 40/205 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFG 141
+ +P YL G +PGD+G+DP L +P +++AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL---- 197
+ W G D YF P + +F V +++L AE R + +
Sbjct: 125 FS------WPGAGVAWYDAGKFQYFA---PASSLFGV--QMLLFAWAELRRYQDFVKPGS 173
Query: 198 -------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
D + +PGG FDP G +K LK KEIKNGRLAM A GF
Sbjct: 174 ANQDPIFSNNKLPDGNEPGYPGGIFDPFGWSKG--DMKSLKTKEIKNGRLAMLAFAGFAA 231
Query: 245 QAYVTGEGPVENLAKHLSDPFANNL 269
QAY TG P++NLA HL+DP+A +
Sbjct: 232 QAYTTGTTPLKNLATHLADPWATTV 256
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 96/207 (46%), Gaps = 44/207 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G + GD G+DP GL++ P++ +WAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 195
P+ W+ D YF + + + E +L E R +
Sbjct: 119 APQ--WY-------DAGKSEYFASSSTL-----FVVEFILFXYVEIRRWQDIKNPGSVNQ 164
Query: 196 -------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q V
Sbjct: 165 DPIFKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNV 220
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISG 275
TG+GP +NL +HLSDP+ N ++ SG
Sbjct: 221 TGKGPFDNLLQHLSDPWHNTIIQTFSG 247
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 105/208 (50%), Gaps = 41/208 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFG 141
YL G +PGD+G+DP G+S P + +WAMLG AG + PE G
Sbjct: 81 YLDGTLPGDFGFDPLGMSDPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGGMG 140
Query: 142 ANCGPEA---VWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYY---- 191
PE+ VWF +GA+ G T +Y+ + I N+ AEI G +Y+
Sbjct: 141 VI--PESTGLVWFTSGAIPPQG-TFDYWANPMTIFWVNMCMMNFAEIKR--GQDYWFPGS 195
Query: 192 -RITNGLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 242
T L E +PGG F+P L KD A ++ KE+KNGRLAM A LG
Sbjct: 196 QAETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKD--DMASMQKKEVKNGRLAMMAFLGC 253
Query: 243 FLQAYVTGEGPVENLAKHLSDPFANNLL 270
+QA VTGEGP +N+ H++DPF N+L
Sbjct: 254 MVQAAVTGEGPWKNICDHVADPFGANML 281
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 111/238 (46%), Gaps = 45/238 (18%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-- 121
++S V E L GPDR ++ P + P +L G +PGD+G+DP G +P+
Sbjct: 56 SLSTVCEPL----GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWF 106
Query: 122 --------KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 173
+WAML AG +IPE K+G E W+ G YF P
Sbjct: 107 AQAELMHGRWAMLAVAGILIPEILQKWGFM--EEFSWYTAGER-------EYFAD--PWT 155
Query: 174 LVFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DP 218
L +A + V G + N +D+E + +PGG FD + P
Sbjct: 156 LFVTQMALMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSP 215
Query: 219 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
+ +L+ KEIKNGRLAM A +GF+ Q TG+GP+ NL HL+DP N+ + + +
Sbjct: 216 EPVMVLRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNIFSAFTSH 273
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 39/205 (19%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YLTG +PGD G+DP GL++ P++ +WAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 203
P+ W+ G YF + + ++ +++ V + + I N G +D +
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 204 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251
+PGG F+PL A + K KEI NGRL M A LGF +Q VTG+
Sbjct: 172 FKQYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGK 226
Query: 252 GPVENLAKHLSDPFANNLLTVISGN 276
GP +NL +H+SDP+ N ++ + GN
Sbjct: 227 GPFDNLLQHISDPWHNTIVQTLGGN 251
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 99/207 (47%), Gaps = 44/207 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL+ P + +WAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR------------ 192
P +W+ D + YF P + +F + E ++ E R
Sbjct: 119 AP--LWY-------DAGKVEYFA---PASTLFVI--EFLMFHYVEVRRWQDIKYPGSVNQ 164
Query: 193 --ITNGLDL--EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
I G L + +PGG F+PL + + K KE+ NGRLAM A LGF +Q+ V
Sbjct: 165 DPIFKGYSLPPNEVGYPGGIFNPLNFPANEE----YKEKELANGRLAMLAFLGFIIQSNV 220
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISG 275
T +GP ENL HLSDP+ + ++ I G
Sbjct: 221 THQGPFENLLTHLSDPWHHTIVQSIQG 247
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 103/199 (51%), Gaps = 41/199 (20%)
Query: 104 GDYGYDPFGLSK--------KPDDFS-------KWAMLGAAGFIIPEAFNKFGANCGPEA 148
GD+G+DP GLS +P + ++AMLGA G I PE K G A
Sbjct: 1 GDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAETA 60
Query: 149 V-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----------- 196
+ WF+TG + G T NY+ + + E+ L+G AE+ R +
Sbjct: 61 LPWFQTGVIPPAG-TYNYWADGYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYF 114
Query: 197 LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
L LE D +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q V
Sbjct: 115 LGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLV 174
Query: 249 TGEGPVENLAKHLSDPFAN 267
TG GP +NL HL+DP+ N
Sbjct: 175 TGVGPFQNLLDHLADPWHN 193
>gi|159478202|ref|XP_001697193.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
gi|60391855|sp|Q93WD2.3|CB29_CHLRE RecName: Full=Chlorophyll a-b binding protein CP29; AltName:
Full=Lhcbm4
gi|15430560|dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|15430568|dbj|BAB64419.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|27542567|gb|AAO16494.1| CP29-like protein [Chlamydomonas reinhardtii]
gi|158274667|gb|EDP00448.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 280
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 118/264 (44%), Gaps = 72/264 (27%)
Query: 53 KAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL-LDRSEIPEYLTGEVPGDYGYDPF 111
K AP A +K VA S Y R + + L L + PE+L G +PGD G+DP
Sbjct: 21 KPAPKATTKKVATSTGTRSGGVGY----RKYQGDALWLPNTTRPEWLDGSLPGDRGFDPL 76
Query: 112 GLSK------------------------------KPDDFS-------------------- 121
GLSK PD+ S
Sbjct: 77 GLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFREC 136
Query: 122 -----KWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 176
+WAML G ++ EA W + G + LDG + Y G ++P ++
Sbjct: 137 ELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDGAS--YAGLSLPFSITQ 186
Query: 177 AVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLA 235
+ E++LVGGAE+YR + + E + +PGG FDPL LA + ++ A LK EIK+ RLA
Sbjct: 187 LIWIEVILVGGAEFYRNSE-TNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLA 245
Query: 236 MFAMLGFFLQAYVTGEGPVENLAK 259
M + G+ +QA TGEG + +LAK
Sbjct: 246 MVSFFGYGVQALSTGEGALGSLAK 269
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 97/205 (47%), Gaps = 40/205 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFG 141
+ +P YL G +PGD+G+DP L +P +++AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL---- 197
+ W G D YF P + +F V +++L AE R + +
Sbjct: 125 FS------WPGAGVAWYDAGKFQYFA---PASSLFGV--QMLLFAWAELRRYQDFVKPGS 173
Query: 198 -------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 244
D + +PGG FDP G +K LK KEIKNGRLAM A GF
Sbjct: 174 ANQDPIFSNNKLPDGNEPGYPGGIFDPFGWSKG--DMKSLKTKEIKNGRLAMLAFAGFAA 231
Query: 245 QAYVTGEGPVENLAKHLSDPFANNL 269
QAY TG P++NLA HL+DP+A +
Sbjct: 232 QAYTTGTTPLKNLATHLADPWATTV 256
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 112/218 (51%), Gaps = 48/218 (22%)
Query: 97 YLTGEVPGDYGYDPFGL----SKKPDDF-------------SKWAMLGAAGFIIPEAFNK 139
YL G +PGD+G+DP GL S F ++WAMLGAAG + PE
Sbjct: 13 YLDGTLPGDFGFDPLGLFDPSSGGSAGFLSQRWLHTAELMHARWAMLGAAGCLAPEYLAH 72
Query: 140 FGANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG------GAEY 190
P+A +WFKTG L +Y +P+ ++FAV ++V++G GAEY
Sbjct: 73 --EKVIPKATGLLWFKTGFLPQASAGFDY---GLPLGVLFAV--QMVMMGVAEGLRGAEY 125
Query: 191 -----YRITNGLDLEDKL---------HPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLA 235
R L LE + +PGG F+PLGL + P ++ EI++GRLA
Sbjct: 126 IAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQAEIRHGRLA 185
Query: 236 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 273
M A LG+ QA VTG GP +N +HL +P NN+L+++
Sbjct: 186 MLACLGYAAQAVVTGRGPYDNWNRHLENPEENNVLSLL 223
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 117/249 (46%), Gaps = 31/249 (12%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY----GPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ + A A + P V E + W G R LP + +++P YL
Sbjct: 16 KPVS--RRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPS-WMPGADLPGYLN 72
Query: 100 GEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC-GPEA 148
G +PGD+G+DP L + P +++AML AG ++PE + G + G
Sbjct: 73 GTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGFSWPGAGV 132
Query: 149 VWFKTGALLLDGNTLNYFGKNIPINLVFAVI-----AEIVLVGGAEYYRITNGLDLEDKL 203
W+ G + FG + L+FA + + V G A I L D
Sbjct: 133 AWYDAGKFEYFAPASSLFGVQM---LLFAWVEIRRYQDFVKPGSANQDPIFTNNKLPDGN 189
Query: 204 ---HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 260
+PGG FDP G +K LK+KEIKNGRLAM A GF QAY TG P++NL+ H
Sbjct: 190 EPGYPGGIFDPFGWSKG--DIKSLKLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNLSTH 247
Query: 261 LSDPFANNL 269
L+DP++ +
Sbjct: 248 LADPWSTTV 256
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPD----------DFSKWAMLGAAGFIIPEAFNKFGANCGP 146
+L G +PGD+G+DP LS P+ ++WAMLG AG + PE K G P
Sbjct: 51 HLDGSLPGDFGFDPLSLSADPEMRKWMVQAELQHARWAMLGVAGAVAPELLTKIGVADLP 110
Query: 147 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----------- 195
V D T Y+ P+ + ++ + AE R +
Sbjct: 111 NWV---------DAGTYQYWAPAGPLFFI-----QMAMFNWAEVRRWQDMKNPGSMNTDP 156
Query: 196 --GLDLEDKL----HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249
G + D +PGG FD LG AKDP + LK+KEIKNGRLAM A LG Q T
Sbjct: 157 LFGYNSNDTNTDVGYPGGLFDKLGYAKDPAKAKELKLKEIKNGRLAMVAFLGICAQYVQT 216
Query: 250 GEGPVENLAKHLSDP 264
G+GPVENL H++ P
Sbjct: 217 GQGPVENLFSHIASP 231
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 99/207 (47%), Gaps = 44/207 (21%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS----------KWAMLGAAGFIIPEAFNKFGANC 144
P YL G +PGD G+DP GL+ P + +WAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR------------ 192
P +W+ D + YF P + +F + E ++ E R
Sbjct: 119 AP--LWY-------DAGKVEYFA---PASTLFVI--EFLMFHYVEVRRWQDIKYPGSVNQ 164
Query: 193 --ITNGLDL--EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 248
I G L + +PGG F+PL + + K KE+ NGRLAM A LGF +Q+ V
Sbjct: 165 DPIFKGYSLPPNEVGYPGGIFNPLNFPANEE----YKEKELANGRLAMLAFLGFIIQSNV 220
Query: 249 TGEGPVENLAKHLSDPFANNLLTVISG 275
T +GP ENL HLSDP+ + ++ I G
Sbjct: 221 THQGPFENLLTHLSDPWHHTIVQSIQG 247
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 109/227 (48%), Gaps = 46/227 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFII-------------- 133
P++L G + GDYG+DPFGL K D + AG +I
Sbjct: 65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124
Query: 134 ---PEAF--NKFG------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
E F +F A G +V + TG D + +Y G+ +
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 184
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E++++G E+ R LD E +L+PGG FDPL LA DP++ A L++ EI
Sbjct: 185 PFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLSLAADPEKTAQLQLAEI 243
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276
K+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 244 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 117/249 (46%), Gaps = 31/249 (12%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY----GPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ + A A + P V E + W G R LP + +++P YL
Sbjct: 16 KPVS--RRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPS-WMPGADLPGYLN 72
Query: 100 GEVPGDYGYDPFGLSKKPDDF----------SKWAMLGAAGFIIPEAFNKFGANC-GPEA 148
G +PGD+G+DP L + P +++AML AG ++PE + G + G
Sbjct: 73 GTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGFSWPGAGV 132
Query: 149 VWFKTGALLLDGNTLNYFGKNIPINLVFAVI-----AEIVLVGGAEYYRITNGLDLEDKL 203
W+ G + FG + L+FA + + V G A I L D
Sbjct: 133 AWYDAGKFEYFAPASSLFGVQM---LLFAWVEIRRYQDFVKPGSANQDPIFTNNKLPDGN 189
Query: 204 ---HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 260
+PGG FDP G +K LK+KEIKNGRLAM A GF QAY TG P++NL+ H
Sbjct: 190 EPGYPGGIFDPFGWSKG--DIKSLKLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNLSTH 247
Query: 261 LSDPFANNL 269
L+DP++ +
Sbjct: 248 LADPWSTTV 256
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 106/228 (46%), Gaps = 46/228 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK-------KPDDFSKWAMLGAAGFIIPEAFNK-------- 139
P+YL G + GDYG+DPFGL K D + G +I F
Sbjct: 62 PDYLDGTLVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNEPGVVIGTRFESSDVKSTPL 121
Query: 140 ------FG-----------------ANCGPEAVWFKTGALLLDGNTL------NYFGKNI 170
FG A G +V + TG D + +Y G+ +
Sbjct: 122 QPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 181
Query: 171 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 229
P ++ + E++++G E+ R LD E +L+PGG FDPLGLA DP++ L++ EI
Sbjct: 182 PFSISTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEI 240
Query: 230 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 277
K+ RLAM A LGF +QA TG+GP+ N A HLSDP + ++
Sbjct: 241 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFGASS 288
>gi|449527137|ref|XP_004170569.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like,
partial [Cucumis sativus]
Length = 79
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 57/66 (86%)
Query: 203 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 262
++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+
Sbjct: 2 IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLT 61
Query: 263 DPFANN 268
DP NN
Sbjct: 62 DPVNNN 67
>gi|118486699|gb|ABK95186.1| unknown [Populus trichocarpa]
Length = 142
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 86/140 (61%), Gaps = 8/140 (5%)
Query: 142 ANCGPEAVWFKTGALLLDGNTL------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 195
A G +V + TG D + +Y G+ +P ++ ++ E++++G E+ R
Sbjct: 3 ATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQR-NA 61
Query: 196 GLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254
LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+
Sbjct: 62 ELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPL 121
Query: 255 ENLAKHLSDPFANNLLTVIS 274
N A HLSDP ++ +S
Sbjct: 122 NNWATHLSDPLHTTIIDTLS 141
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,219,233,577
Number of Sequences: 23463169
Number of extensions: 250863715
Number of successful extensions: 602388
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 594369
Number of HSP's gapped (non-prelim): 3184
length of query: 283
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 142
effective length of database: 9,050,888,538
effective search space: 1285226172396
effective search space used: 1285226172396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)