Query 023372
Match_columns 283
No_of_seqs 234 out of 1044
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 4.5E-60 9.8E-65 440.2 15.3 225 16-274 7-285 (286)
2 PLN00025 photosystem II light 100.0 1.5E-57 3.3E-62 419.4 14.0 199 72-274 43-256 (262)
3 PLN00171 photosystem light-ha 100.0 5E-57 1.1E-61 424.6 10.7 204 68-274 96-323 (324)
4 PLN00048 photosystem I light h 100.0 3.2E-54 7E-59 397.7 14.1 191 74-275 36-261 (262)
5 PLN00098 light-harvesting comp 100.0 4.6E-54 9.9E-59 397.2 14.1 185 72-275 54-266 (267)
6 PLN00101 Photosystem I light-h 100.0 2.9E-54 6.3E-59 395.4 12.0 180 72-274 45-250 (250)
7 PLN00097 photosystem I light h 100.0 8.3E-53 1.8E-57 384.4 10.9 176 77-270 41-243 (244)
8 PLN00099 light-harvesting comp 100.0 1.1E-52 2.5E-57 383.8 11.2 184 78-275 42-238 (243)
9 PLN00147 light-harvesting comp 100.0 1.7E-51 3.6E-56 377.7 12.3 184 75-276 40-252 (252)
10 PLN00100 light-harvesting comp 100.0 7.2E-50 1.6E-54 365.1 10.7 173 77-280 32-215 (246)
11 PLN00170 photosystem II light- 100.0 5.5E-44 1.2E-48 328.1 11.2 163 78-258 49-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 1.7E-34 3.6E-39 246.1 6.6 138 94-247 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 1.2E-33 2.5E-38 254.0 8.3 145 93-255 45-208 (209)
14 PLN00120 fucoxanthin-chlorophy 99.9 1.2E-26 2.6E-31 207.8 8.9 134 108-254 47-198 (202)
15 PLN00098 light-harvesting comp 99.6 1.1E-15 2.4E-20 142.1 6.3 56 201-256 76-132 (267)
16 PLN00101 Photosystem I light-h 99.6 3.5E-15 7.6E-20 137.7 5.7 54 201-254 67-121 (250)
17 PLN00147 light-harvesting comp 99.5 9.8E-15 2.1E-19 134.9 5.4 52 201-252 59-111 (252)
18 PLN00171 photosystem light-ha 99.5 3.8E-14 8.3E-19 134.6 5.2 53 201-253 124-177 (324)
19 PLN00097 photosystem I light h 99.5 5.2E-14 1.1E-18 129.5 5.5 53 201-253 58-111 (244)
20 PLN00170 photosystem II light- 99.5 6.2E-14 1.3E-18 129.7 5.6 52 201-252 71-123 (255)
21 PLN00025 photosystem II light 99.4 8.5E-14 1.8E-18 129.3 5.4 52 201-252 67-119 (262)
22 PLN00100 light-harvesting comp 99.4 1.4E-13 3.1E-18 126.6 5.4 50 201-250 49-99 (246)
23 PLN00099 light-harvesting comp 99.4 1.7E-13 3.7E-18 126.1 4.7 50 201-250 58-108 (243)
24 PLN00089 fucoxanthin-chlorophy 99.4 6.3E-13 1.4E-17 120.0 5.9 49 205-253 54-104 (209)
25 PLN00187 photosystem II light- 99.4 4.1E-13 8.8E-18 126.1 4.7 51 201-251 66-160 (286)
26 PLN00048 photosystem I light h 99.3 6.3E-13 1.4E-17 123.6 4.7 54 201-255 56-116 (262)
27 PF00504 Chloroa_b-bind: Chlor 99.3 1.4E-12 3.1E-17 111.2 5.7 50 201-251 6-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.2 5.6E-12 1.2E-16 113.4 3.5 52 203-254 41-95 (202)
29 PHA02337 putative high light i 97.9 7.3E-06 1.6E-10 54.7 2.8 28 226-253 4-31 (35)
30 PLN00084 photosystem II subuni 97.6 4.1E-05 9E-10 67.8 3.0 46 220-265 131-177 (214)
31 PLN00014 light-harvesting-like 97.4 9.4E-05 2E-09 68.1 2.6 37 224-260 159-195 (250)
32 PLN00014 light-harvesting-like 47.4 6.2 0.00013 37.0 -0.0 18 121-138 167-184 (250)
33 PLN02449 ferrochelatase 37.1 22 0.00048 36.5 2.1 21 234-254 463-483 (485)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=4.5e-60 Score=440.22 Aligned_cols=225 Identities=37% Similarity=0.682 Sum_probs=184.9
Q ss_pred chhhcCCccccccccccCCCCCCCCCCCcceeeccCCCCCCCCCCCCcccCcchhhhhhhcCCCCccccCCCCCCCCCCC
Q 023372 16 AKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIP 95 (283)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~~~lP~g~~~~~~~P 95 (283)
.|.+.|.++. .++++..+++++|+.++...++ +...+...+|+++|++|||+ .++|
T Consensus 7 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~w~p~-----~~~P 62 (286)
T PLN00187 7 ASSFMGTRVP-----------DVASNSGRIVARFGFGKKKKAA--------KKAKKKSSKVGADRPLWFPG-----AKAP 62 (286)
T ss_pred chhhhhhhhc-----------ccccCccchhhhhccCcccccC--------CccccCccCCCCCccccCCC-----CCCc
Confidence 3557776664 1344778889999753321111 01112356789999999997 8999
Q ss_pred CCCCCCCCCCccccCCCCCCCccc-----------------------------------------------------cch
Q 023372 96 EYLTGEVPGDYGYDPFGLSKKPDD-----------------------------------------------------FSK 122 (283)
Q Consensus 96 ~~LdGslpGD~GFDPLGLs~~pe~-----------------------------------------------------l~R 122 (283)
+|||||||||||||||||+++||. |+|
T Consensus 63 ~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGR 142 (286)
T PLN00187 63 EWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGR 142 (286)
T ss_pred ccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhH
Confidence 999999999999999999988762 579
Q ss_pred hhhhccccchhhhhhccCCCCCCCCcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeeccCccCCCC
Q 023372 123 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 202 (283)
Q Consensus 123 ~AMLAvvG~lv~E~l~~~G~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~g~~~~d~ 202 (283)
|||||++||++||+++ +..|+++|.+.+..+ ..|++.+.++.+..++++|+++||++|.+|+.+ .+.++.
T Consensus 143 wAMLAvaG~lvpEll~--------G~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~-~~~~~~ 212 (286)
T PLN00187 143 WAMLATLGALSVEALT--------GVTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKR 212 (286)
T ss_pred HHHHHhhchhhHHhcc--------CCccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccC-CCCCCC
Confidence 9999999999999974 236999997655433 358887777666677799999999999999865 334467
Q ss_pred CCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhh
Q 023372 203 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274 (283)
Q Consensus 203 ~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~ 274 (283)
.||||+ ||||||.+|+++++++|++|||||||||+|++||++|+.+||+||++||.+|++||+|+||+++|.
T Consensus 213 ~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 213 LYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred CCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 899997 999999999999999999999999999999999999999999999999999999999999999975
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=1.5e-57 Score=419.37 Aligned_cols=199 Identities=54% Similarity=0.957 Sum_probs=172.0
Q ss_pred hhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccCC
Q 023372 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFG 141 (283)
Q Consensus 72 ~~~~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~G 141 (283)
.+.|||+||++|| |+++ .++|+||||++|||||||||||++++++ |+||||||++|+++||+++..|
T Consensus 43 ~~~~~g~~R~~~l--~p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 43 GSIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cccccCCCCcccc--CCcc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 5679999999999 3455 6899999999999999999999988763 6899999999999999998766
Q ss_pred CCCCCCcchhhccccccCCCcccccCCCchh---HHHHHHHHHHHHHhcceeeeeccCc--cCCCCCCCCCCCCCCCCCC
Q 023372 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAK 216 (283)
Q Consensus 142 ~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi---~~~~~~~~qvll~G~~E~~r~~~g~--~~~d~~~PG~~FDPLgl~~ 216 (283)
..+ .+++||++|...+..++++|++++..+ .+..++++|+++||++|.+|+.++. ...|.+||||+||||||.+
T Consensus 120 ~~~-~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~ 198 (262)
T PLN00025 120 VKF-GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLAD 198 (262)
T ss_pred cCc-CcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCC
Confidence 543 256899999877777788999977443 2344567899999999999987532 1235689999999999999
Q ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhh
Q 023372 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274 (283)
Q Consensus 217 d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~ 274 (283)
|+++++++|++|||||||||+|++||++|+.+||+||++||.+|++||+++|+++++.
T Consensus 199 d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~ 256 (262)
T PLN00025 199 DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYAT 256 (262)
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999998753
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=5e-57 Score=424.64 Aligned_cols=204 Identities=48% Similarity=0.807 Sum_probs=174.0
Q ss_pred chhhhhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhh
Q 023372 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAF 137 (283)
Q Consensus 68 ~~~~~~~~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l 137 (283)
.+++.+.|||++|++|||+ ++ .++|+||||++|||||||||||++++++ |+||||||++|+++||++
T Consensus 96 ~~~~~~~~~g~~R~~wl~~--~~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l 172 (324)
T PLN00171 96 KARNESFWYGEERPRWLGP--IP-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVL 172 (324)
T ss_pred hhcccCcccCCCCccccCC--CC-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHh
Confidence 5677889999999999964 32 3799999999999999999999998653 789999999999999999
Q ss_pred ccCCCCCCCCcchhhccccccCCCcccccCCCch-----hHHHHHHHHHHHHHhcceeeeeccCc--------cCCCCCC
Q 023372 138 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITNGL--------DLEDKLH 204 (283)
Q Consensus 138 ~~~G~~~~p~~~W~~aG~~~l~g~~l~y~g~~~p-----i~~~~~~~~qvll~G~~E~~r~~~g~--------~~~d~~~ 204 (283)
+++|....++++||++|...+.+..++|++.+.. ..+..++++|+++|+.+|++|+.+-. ..+|..|
T Consensus 173 ~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gY 252 (324)
T PLN00171 173 DLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINY 252 (324)
T ss_pred ccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccC
Confidence 8876543456789999987777777778766531 12445668999999889999976511 1235568
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhh
Q 023372 205 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274 (283)
Q Consensus 205 PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~ 274 (283)
|||. ||||||.+|+++++++|++|||||||||+|++||++|+.+||++|++||.+|++||+||||++++.
T Consensus 253 PGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 253 PGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred CcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 9987 999999999999999999999999999999999999999999999999999999999999999874
No 4
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=3.2e-54 Score=397.66 Aligned_cols=191 Identities=42% Similarity=0.732 Sum_probs=158.9
Q ss_pred hhcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCc--------------c-ccchhhhhccccchhhhhhc
Q 023372 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP--------------D-DFSKWAMLGAAGFIIPEAFN 138 (283)
Q Consensus 74 ~~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~p--------------e-~l~R~AMLAvvG~lv~E~l~ 138 (283)
.+|+++|++|+|+ .++|+||||++|||||||||||++.. | .|+||||||++|+++||+++
T Consensus 36 ~~~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 36 AKQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCCceecCC-----CCCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 4567899999997 89999999999999999999998521 2 37999999999999999998
Q ss_pred cCCCCCC-CCcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeeccCc------------------cC
Q 023372 139 KFGANCG-PEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL------------------DL 199 (283)
Q Consensus 139 ~~G~~~~-p~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~g~------------------~~ 199 (283)
+.|.... ....|+++|+.. ..+..+|++.+. .++++|+++||++|.+|+++.. ..
T Consensus 111 ~~g~~~~~~~~~w~~ag~~~-~~~~~~y~~~p~-----~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~ 184 (262)
T PLN00048 111 KAGLIPQETALPWFQSGVIP-PAGTYDYWADPY-----TLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGS 184 (262)
T ss_pred cCCccccccccccccccccc-cccccccccchh-----HHHHHHHHHhhheeeeccccccCCCcccccccccchhccccc
Confidence 7665322 134699998642 233456777632 3457788899999999986510 00
Q ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhhc
Q 023372 200 EDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 275 (283)
Q Consensus 200 ~d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~~ 275 (283)
.|..||||+ ||||||.+|+++++++|++|||||||||+|++||++|+++||+||++||.+|++||+|+||++++..
T Consensus 185 ~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 185 GNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred cccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccccc
Confidence 256799998 9999999999999999999999999999999999999999999999999999999999999999854
No 5
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=4.6e-54 Score=397.20 Aligned_cols=185 Identities=42% Similarity=0.787 Sum_probs=158.0
Q ss_pred hhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccCC
Q 023372 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFG 141 (283)
Q Consensus 72 ~~~~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~G 141 (283)
...+|+++|++|+|+ .++|+||||++|||||||||||++++++ |+||||||++|+++||++++.|
T Consensus 54 ~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g 128 (267)
T PLN00098 54 VCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG 128 (267)
T ss_pred ccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 566799999999998 7999999999999999999999987653 7899999999999999998766
Q ss_pred CCCCCCcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeeccC----c-c-----------CCCCCCC
Q 023372 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----L-D-----------LEDKLHP 205 (283)
Q Consensus 142 ~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~g----~-~-----------~~d~~~P 205 (283)
.. ....|+++|.. .|++.+. .+.++|+++||++|.+|+.+- . . ..|.+||
T Consensus 129 ~~--~~~~w~~Ag~~-------~~~~~~~-----~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yP 194 (267)
T PLN00098 129 FI--ENFSWYDAGAR-------EYFADPT-----TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYP 194 (267)
T ss_pred cc--cccccccccch-------hhccCch-----HHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCC
Confidence 53 24579998853 3554431 245779999999999987541 0 0 1145799
Q ss_pred CCC-CCCCCCCC-CHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhhc
Q 023372 206 GGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 275 (283)
Q Consensus 206 G~~-FDPLgl~~-d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~~ 275 (283)
||+ ||||||.+ |+++++++|++|||||||||+|++||++|+.+||++|++||.+|++||+++||++++.+
T Consensus 195 Gg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 195 GGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 999 99999975 89999999999999999999999999999999999999999999999999999999865
No 6
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2.9e-54 Score=395.35 Aligned_cols=180 Identities=40% Similarity=0.742 Sum_probs=151.6
Q ss_pred hhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccCC
Q 023372 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFG 141 (283)
Q Consensus 72 ~~~~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~G 141 (283)
.+.++.++|++|+|+ .++|+||||++|||+|||||||++++++ |+||||||++|+++||+++..|
T Consensus 45 ~~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g 119 (250)
T PLN00101 45 RSFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 119 (250)
T ss_pred ccccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCC
Confidence 345667899999997 7899999999999999999999987653 6899999999999999998776
Q ss_pred CCCCCCcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeecc----Cc------------cCCCCCCC
Q 023372 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL------------DLEDKLHP 205 (283)
Q Consensus 142 ~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~----g~------------~~~d~~~P 205 (283)
... .+.|+++|+. .|++.. ..++++|+++||++|++|+.+ |. ..+|..||
T Consensus 120 ~~~--~p~w~~ag~~-------~~~~~~-----~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YP 185 (250)
T PLN00101 120 IIN--APQWYDAGKA-------EYFASS-----STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYP 185 (250)
T ss_pred CcC--CCccccccch-------hhcccc-----hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCC
Confidence 543 3479998864 355432 234567888999999999764 11 11355799
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhh
Q 023372 206 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 274 (283)
Q Consensus 206 G~~FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~ 274 (283)
||.||||||+++ +++|+||||||||||+|++||++|+.+||+||++||.+|++||+|+||+++++
T Consensus 186 GG~FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 186 GGIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred CCccCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 999999999875 37899999999999999999999999999999999999999999999999974
No 7
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=8.3e-53 Score=384.41 Aligned_cols=176 Identities=39% Similarity=0.616 Sum_probs=149.6
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccCCCCCCC
Q 023372 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFGANCGP 146 (283)
Q Consensus 77 g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~G~~~~p 146 (283)
+++|++|||+ .++|+||||++|||||||||||++++++ |+||||||++|+++||++++.|...
T Consensus 41 ~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~-- 113 (244)
T PLN00097 41 AADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD-- 113 (244)
T ss_pred CCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc--
Confidence 5699999997 7999999999999999999999987653 6899999999999999998877532
Q ss_pred CcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeeccCc-----------------cCCCCCCCCCCC
Q 023372 147 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL-----------------DLEDKLHPGGPF 209 (283)
Q Consensus 147 ~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~g~-----------------~~~d~~~PG~~F 209 (283)
.++||++++.. .|+... ..++++|+++||++|.+|+.+-. ...|..||||.|
T Consensus 114 ~p~W~~Ag~~~------~~~~~~-----~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~F 182 (244)
T PLN00097 114 LPNWIDAAKWD------GYWAGA-----GPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLF 182 (244)
T ss_pred CCccccCCcch------hccccc-----hhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCC
Confidence 35799998641 133321 12456788889999999976411 012446999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHh
Q 023372 210 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 270 (283)
Q Consensus 210 DPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~ 270 (283)
|||||.+|+++++++|++|||||||||+|++||++|+.+||+||++||.+|++||+|+||+
T Consensus 183 DPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 183 DKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 8
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=1.1e-52 Score=383.82 Aligned_cols=184 Identities=41% Similarity=0.749 Sum_probs=156.8
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCcc----------ccchhhhhccccchhhhhhccCCCCCCCC
Q 023372 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------DFSKWAMLGAAGFIIPEAFNKFGANCGPE 147 (283)
Q Consensus 78 ~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe----------~l~R~AMLAvvG~lv~E~l~~~G~~~~p~ 147 (283)
.+|..|+|+ .++|+||||++|||||||||||+++++ .|+||||||++|+|+||+++.
T Consensus 42 ~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------- 108 (243)
T PLN00099 42 TMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------- 108 (243)
T ss_pred cccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------
Confidence 478899997 799999999999999999999998764 379999999999999999753
Q ss_pred cchhhcccc-ccCCCcccccCCCchh-HHHHHHHHHHHHHhcceeeeeccCccCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 023372 148 AVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLK 225 (283)
Q Consensus 148 ~~W~~aG~~-~l~g~~l~y~g~~~pi-~~~~~~~~qvll~G~~E~~r~~~g~~~~d~~~PG~~FDPLgl~~d~~~~~~~k 225 (283)
..|++++.. .++++...|++++.++ .+..++++|+++||++|.+|+.. .+.++++||||.||||||.+|+++++++|
T Consensus 109 ~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~-~~~~~~~yPGd~FDPlGl~kd~~~~~~~k 187 (243)
T PLN00099 109 GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKKYPGGAFDPLGYSKDPKKFEEYK 187 (243)
T ss_pred CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhcc-CCCCCCcCCCCcCCcccccCCHHHHHHHH
Confidence 248877653 3445556777776655 34556688998999999988653 22346789999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHhhh-hccCCcchhhhhhhhCCcccchHhHhhhc
Q 023372 226 VKEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVISG 275 (283)
Q Consensus 226 ~~ElkNGRLAMlA~~G~~~q~-~~tg~gp~~~l~~~~~~P~~~n~~~~~~~ 275 (283)
+||||||||||+||+||++|+ .+||++|++||.+|++||+|+|+++.+..
T Consensus 188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 999999999999999999999 57999999999999999999999998865
No 9
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1.7e-51 Score=377.67 Aligned_cols=184 Identities=40% Similarity=0.710 Sum_probs=154.1
Q ss_pred hcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCcc----------ccchhhhhccccchhhhhhccCCCCC
Q 023372 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------DFSKWAMLGAAGFIIPEAFNKFGANC 144 (283)
Q Consensus 75 ~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe----------~l~R~AMLAvvG~lv~E~l~~~G~~~ 144 (283)
.++++|++|+|+ .++|+||||++|||+|||||||+++++ .||||||||++|+++||+++..|...
T Consensus 40 ~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~ 114 (252)
T PLN00147 40 VVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRN 114 (252)
T ss_pred cCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcC
Confidence 457799999997 789999999999999999999998764 37899999999999999988766532
Q ss_pred CCCcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeeccC----c--------------cCCCCCCCC
Q 023372 145 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----L--------------DLEDKLHPG 206 (283)
Q Consensus 145 ~p~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~g----~--------------~~~d~~~PG 206 (283)
.+.|++++...++ +.. ....+++|+++||++|.+|+.+- . ...+..|||
T Consensus 115 --~p~w~~ag~~~~~------~~~-----~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPG 181 (252)
T PLN00147 115 --LPVWYEAGAVKFE------FAS-----TRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPG 181 (252)
T ss_pred --Ccchhhcccchhc------ccc-----chHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCcc
Confidence 3579988753221 111 13455789889999999886421 0 012356999
Q ss_pred CC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhhcc
Q 023372 207 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 276 (283)
Q Consensus 207 ~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~~~ 276 (283)
|+ ||||||.+|+++++++|+||||||||||+|++||++|+++||+||++||.+|++||+|+||++++.++
T Consensus 182 d~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~~ 252 (252)
T PLN00147 182 GPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSHS 252 (252)
T ss_pred cccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcCC
Confidence 99 99999999999999999999999999999999999999999999999999999999999999998753
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=7.2e-50 Score=365.07 Aligned_cols=173 Identities=34% Similarity=0.565 Sum_probs=143.1
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccCCCCCCC
Q 023372 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFGANCGP 146 (283)
Q Consensus 77 g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~G~~~~p 146 (283)
..+|++|+|+ .++|+||||++|||||||||||++++|+ |+||||||++|+++||+++.
T Consensus 32 ~~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~------- 99 (246)
T PLN00100 32 ARARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL------- 99 (246)
T ss_pred cCCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc-------
Confidence 3489999997 7999999999999999999999988753 68999999999999999753
Q ss_pred CcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeeccCccCCCCCCCCCC-CCCCCCCCCHHHHHHHH
Q 023372 147 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLK 225 (283)
Q Consensus 147 ~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~g~~~~d~~~PG~~-FDPLgl~~d~~~~~~~k 225 (283)
+.|+++|... |.. ....++++|+++||++|.+|+.+-...++..+||++ ||||||.+ +++|
T Consensus 100 -P~w~~ag~~~-------~~~-----~~~~l~~iqill~g~~E~~r~~~~~~~g~~~~pg~~~FDPLGl~~-----~~~K 161 (246)
T PLN00100 100 -PKFWEAGAEK-------YGL-----DLQTLVLIQVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMDS-----PEMK 161 (246)
T ss_pred -cchhhcchhh-------hcc-----chhHHHHHHHHHHHHHhhhcccccccccccCCCCCCCCCcccccH-----HHHH
Confidence 3588877532 211 123456789999999999998653233345678998 99999963 5789
Q ss_pred HHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhhcccccC
Q 023372 226 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 280 (283)
Q Consensus 226 ~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~~~~~~~ 280 (283)
+||||||||||+||+||++|+.+||++|++||.+|++||+|+||+++.. +.|-+
T Consensus 162 ~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~~-~~~~~ 215 (246)
T PLN00100 162 VKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSSV-GPETV 215 (246)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCCC-CCccc
Confidence 9999999999999999999999999999999999999999999999733 34433
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=5.5e-44 Score=328.07 Aligned_cols=163 Identities=36% Similarity=0.631 Sum_probs=130.6
Q ss_pred CCCccccCCCCC-CCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccCCCCCCC
Q 023372 78 PDRRIFLPEGLL-DRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFGANCGP 146 (283)
Q Consensus 78 ~~R~~~lP~g~~-~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~G~~~~p 146 (283)
.+|+.|+|+-.- .....|+||||++||||||||+||++++|. |+||||||++|+++||+++
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~-------- 120 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-------- 120 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc--------
Confidence 478899996211 123589999999999999999999988763 6899999999999999874
Q ss_pred CcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeeccCcc----------------------CCCCCC
Q 023372 147 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD----------------------LEDKLH 204 (283)
Q Consensus 147 ~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~g~~----------------------~~d~~~ 204 (283)
+..||++|... .+.. ++.+..++++|+++||++|.+|+.+... .++..|
T Consensus 121 g~~w~~aG~~~------~~~~---p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~y 191 (255)
T PLN00170 121 GIPWFEAGADP------GAIA---PFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGY 191 (255)
T ss_pred CCChhhCCccc------cccC---ccchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCccc
Confidence 23599998641 1111 2223445678999999999999865210 124569
Q ss_pred CCCC-CCCCCCCC---------CHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhh
Q 023372 205 PGGP-FDPLGLAK---------DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 258 (283)
Q Consensus 205 PG~~-FDPLgl~~---------d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~ 258 (283)
|||. ||||||.+ |+++++++|++|||||||||+|++||++|+ .||++|+++|.
T Consensus 192 PGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 192 PGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred CCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 9997 99999985 788999999999999999999999999999 69999999984
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=1.7e-34 Score=246.14 Aligned_cols=138 Identities=41% Similarity=0.720 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCccccCCCCCCCc--------c-ccchhhhhccccchhhhhhccCCC-CC-CCCcchhhccccccCCCc
Q 023372 94 IPEYLTGEVPGDYGYDPFGLSKKP--------D-DFSKWAMLGAAGFIIPEAFNKFGA-NC-GPEAVWFKTGALLLDGNT 162 (283)
Q Consensus 94 ~P~~LdGslpGD~GFDPLGLs~~p--------e-~l~R~AMLAvvG~lv~E~l~~~G~-~~-~p~~~W~~aG~~~l~g~~ 162 (283)
+|+|||||++||+||||+||++++ | .||||||||++|++++|+++.++. .. .....|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------- 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDPDFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------- 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS-------
T ss_pred CcccccCCCCCCCCCChhhcccchhHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh-------
Confidence 589999999999999999999864 2 379999999999999999866432 11 11223654320
Q ss_pred ccccCCCchhHHHHHHHHHH-HHHhcceeeeeccCcc-----CCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhH
Q 023372 163 LNYFGKNIPINLVFAVIAEI-VLVGGAEYYRITNGLD-----LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 235 (283)
Q Consensus 163 l~y~g~~~pi~~~~~~~~qv-ll~G~~E~~r~~~g~~-----~~d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLA 235 (283)
+ + ++..+++|+ +++|++|.+|...... ..+..+|||+ |||+|+.+|+++++++|++||||||||
T Consensus 74 ~-------~--~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlA 144 (156)
T PF00504_consen 74 I-------P--VPAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLA 144 (156)
T ss_dssp S-------S--SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHH
T ss_pred h-------h--hhhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 0 0 122344444 4589999987765221 2356899998 999999988999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 023372 236 MFAMLGFFLQAY 247 (283)
Q Consensus 236 MlA~~G~~~q~~ 247 (283)
|+||+|+++|+.
T Consensus 145 Mla~~g~~~~e~ 156 (156)
T PF00504_consen 145 MLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999973
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=254.03 Aligned_cols=145 Identities=30% Similarity=0.375 Sum_probs=106.5
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCc-c----------ccchhhhhccccchhhhhhccCCCCC--CCCcchhhccccccC
Q 023372 93 EIPEYLTGEVPGDYGYDPFGLSKKP-D----------DFSKWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLD 159 (283)
Q Consensus 93 ~~P~~LdGslpGD~GFDPLGLs~~p-e----------~l~R~AMLAvvG~lv~E~l~~~G~~~--~p~~~W~~aG~~~l~ 159 (283)
+.|+.|||+ .||+|||||||+++. + +|+||||||++|+++||+++.+|... ...+.|+++..
T Consensus 45 ~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~---- 119 (209)
T PLN00089 45 AKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHD---- 119 (209)
T ss_pred cCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHH----
Confidence 456689999 999999999998642 2 27999999999999999988776421 00112221110
Q ss_pred CCcccccCCCchhHHHHHH-HHHHHH-HhcceeeeeccC--ccCCCCCCCCCC-CCCCCCC-CCHHHHHHHHHHHHhhhh
Q 023372 160 GNTLNYFGKNIPINLVFAV-IAEIVL-VGGAEYYRITNG--LDLEDKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGR 233 (283)
Q Consensus 160 g~~l~y~g~~~pi~~~~~~-~~qvll-~G~~E~~r~~~g--~~~~d~~~PG~~-FDPLgl~-~d~~~~~~~k~~ElkNGR 233 (283)
.++... ++||++ ||++|....... ...+++++|||+ ||||||. +|+++++++|++||||||
T Consensus 120 -------------~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGR 186 (209)
T PLN00089 120 -------------ALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGR 186 (209)
T ss_pred -------------hhcccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhH
Confidence 111122 568765 899995322111 112346799999 9999995 589999999999999999
Q ss_pred hHHHHHHHHHhhhhccCCcchh
Q 023372 234 LAMFAMLGFFLQAYVTGEGPVE 255 (283)
Q Consensus 234 LAMlA~~G~~~q~~~tg~gp~~ 255 (283)
|||+||+||++|+.+||++.++
T Consensus 187 lAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 187 LAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999998753
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.93 E-value=1.2e-26 Score=207.75 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=91.0
Q ss_pred ccCCCCCCC--cc----------ccchhhhhccccchhhhhh-ccCCCCCCCCcchhhccccccCCCcccccCCCchhHH
Q 023372 108 YDPFGLSKK--PD----------DFSKWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 174 (283)
Q Consensus 108 FDPLGLs~~--pe----------~l~R~AMLAvvG~lv~E~l-~~~G~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi~~ 174 (283)
|||+||+++ ++ .|+||||||++||+++|++ +.+|.... ....+.. ..+ .+.. .-.+
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~-~g~~~~~---~p~--~~~a-----~~~v 115 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDY-SGTSFSD---IPN--GFAA-----LDAI 115 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCcccc-ccccccc---ccc--chhh-----hhhc
Confidence 999999853 33 3789999999999999974 33442110 0011110 000 0000 0123
Q ss_pred HHHHHHHHHH-HhcceeeeeccCccCCCCCCCCCC-CC--CCCCCC-CHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhcc
Q 023372 175 VFAVIAEIVL-VGGAEYYRITNGLDLEDKLHPGGP-FD--PLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 249 (283)
Q Consensus 175 ~~~~~~qvll-~G~~E~~r~~~g~~~~d~~~PG~~-FD--PLgl~~-d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~t 249 (283)
+..+++||++ +|++|+++..+- .+++++|||+ ++ ++|+.. |+++++++|++||||||||||||+||++|+.++
T Consensus 116 p~~g~~qi~~~ig~~E~~~~~~~--~~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~ 193 (202)
T PLN00120 116 PTAGLLQILAFIGFLELAVMKDI--TGEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLG 193 (202)
T ss_pred chhHHHHHHHHHHHHHHHhhccc--ccCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4456889865 899998765421 1135789975 33 566654 788999999999999999999999999999999
Q ss_pred CCcch
Q 023372 250 GEGPV 254 (283)
Q Consensus 250 g~gp~ 254 (283)
|..|+
T Consensus 194 g~~~~ 198 (202)
T PLN00120 194 VELPI 198 (202)
T ss_pred CCCcC
Confidence 98776
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.59 E-value=1.1e-15 Score=142.11 Aligned_cols=56 Identities=36% Similarity=0.617 Sum_probs=52.1
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhh
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 256 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~ 256 (283)
|+.+|||+ ||||||.+|+++++++|++||||||+||+|++||++|+++++.+++++
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 56789999 999999999999999999999999999999999999999998877653
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.55 E-value=3.5e-15 Score=137.68 Aligned_cols=54 Identities=39% Similarity=0.682 Sum_probs=51.4
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcch
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~ 254 (283)
|+.+|||+ ||||||.+|+++++++|++|||||||||+|++|+++|+++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 56789999 9999999999999999999999999999999999999999998876
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.52 E-value=9.8e-15 Score=134.89 Aligned_cols=52 Identities=31% Similarity=0.553 Sum_probs=49.2
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCc
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 252 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~g 252 (283)
|+.+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 67899999 99999999999999999999999999999999999999987765
No 18
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.47 E-value=3.8e-14 Score=134.59 Aligned_cols=53 Identities=36% Similarity=0.422 Sum_probs=49.3
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcc
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp 253 (283)
|+..|||+ ||||||++|+++++++|++||||||+||+|++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 67889999 999999999999999999999999999999999999999876543
No 19
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.46 E-value=5.2e-14 Score=129.53 Aligned_cols=53 Identities=30% Similarity=0.466 Sum_probs=49.8
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcc
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp 253 (283)
|+..|||+ ||||||++|+++++++|++||||||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 56789999 999999999999999999999999999999999999999988754
No 20
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.45 E-value=6.2e-14 Score=129.68 Aligned_cols=52 Identities=40% Similarity=0.639 Sum_probs=49.0
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCc
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 252 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~g 252 (283)
|..+|||+ ||||+|.+|+++++++|++||+|||+||+|++|+++|++++|..
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~ 123 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 123 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCC
Confidence 56789999 99999999999999999999999999999999999999998864
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.44 E-value=8.5e-14 Score=129.29 Aligned_cols=52 Identities=31% Similarity=0.511 Sum_probs=48.4
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCc
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 252 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~g 252 (283)
|...|||+ ||||||++|+++++++|++||||||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 55789999 99999999999999999999999999999999999999987653
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.42 E-value=1.4e-13 Score=126.64 Aligned_cols=50 Identities=36% Similarity=0.539 Sum_probs=47.2
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccC
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg 250 (283)
|+.+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|++++.
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~ 99 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL 99 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc
Confidence 67899999 999999999999999999999999999999999999999754
No 23
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.40 E-value=1.7e-13 Score=126.12 Aligned_cols=50 Identities=32% Similarity=0.479 Sum_probs=47.0
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccC
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg 250 (283)
|+..|||+ ||||+|++++++++++|++||||||+||+|++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 67889999 999999999999999999999999999999999999999754
No 24
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.37 E-value=6.3e-13 Score=120.04 Aligned_cols=49 Identities=39% Similarity=0.680 Sum_probs=43.7
Q ss_pred CCCC-CCCCCCCC-CHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcc
Q 023372 205 PGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 253 (283)
Q Consensus 205 PG~~-FDPLgl~~-d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp 253 (283)
.||+ ||||||.+ ++++++++|++||||||+||+|++|+++|+.++..|.
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 5776 99999985 6678999999999999999999999999999876654
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.37 E-value=4.1e-13 Score=126.06 Aligned_cols=51 Identities=35% Similarity=0.506 Sum_probs=46.7
Q ss_pred CCCCCCCC-CCCCCCCCCHHH-------------------------------------------HHHHHHHHHhhhhhHH
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQ-------------------------------------------FALLKVKEIKNGRLAM 236 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~-------------------------------------------~~~~k~~ElkNGRLAM 236 (283)
|+..|||+ ||||||++||+. ++++|+.||+|||+||
T Consensus 66 dGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAM 145 (286)
T PLN00187 66 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAM 145 (286)
T ss_pred cCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHH
Confidence 56789999 999999998885 5999999999999999
Q ss_pred HHHHHHHhhhhccCC
Q 023372 237 FAMLGFFLQAYVTGE 251 (283)
Q Consensus 237 lA~~G~~~q~~~tg~ 251 (283)
+|++|++++|+++|.
T Consensus 146 LAvaG~lvpEll~G~ 160 (286)
T PLN00187 146 LATLGALSVEALTGV 160 (286)
T ss_pred HHhhchhhHHhccCC
Confidence 999999999998763
No 26
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.35 E-value=6.3e-13 Score=123.59 Aligned_cols=54 Identities=35% Similarity=0.580 Sum_probs=46.9
Q ss_pred CCCCCCCC-CCCCCCCCCHH------HHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchh
Q 023372 201 DKLHPGGP-FDPLGLAKDPD------QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 255 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~------~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~ 255 (283)
|+..|||+ ||||||.+ ++ +.+++|++||+|||+||+|++||++|+++++.+.+.
T Consensus 56 dG~lPGD~GFDPlGL~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~ 116 (262)
T PLN00048 56 DGTLPGDFGFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP 116 (262)
T ss_pred CCCCCCccCCCccccCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence 66789999 99999974 32 467889999999999999999999999998877654
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.33 E-value=1.4e-12 Score=111.25 Aligned_cols=50 Identities=48% Similarity=0.780 Sum_probs=45.7
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCC
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 251 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~ 251 (283)
|+.++|++ |||+||++++ +++++|..||||||+||+|++|++++++.++.
T Consensus 6 ~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 6 DGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred cCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 45578888 9999999887 89999999999999999999999999998774
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.22 E-value=5.6e-12 Score=113.35 Aligned_cols=52 Identities=38% Similarity=0.736 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCCCC--CHHHHHHHHHHHHhhhhhHHHHHHHHHhhhh-ccCCcch
Q 023372 203 LHPGGPFDPLGLAK--DPDQFALLKVKEIKNGRLAMFAMLGFFLQAY-VTGEGPV 254 (283)
Q Consensus 203 ~~PG~~FDPLgl~~--d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~-~tg~gp~ 254 (283)
..|.|+|||+||.+ |+++++++|++||||||+||+|++||++|+. ++..+.+
T Consensus 41 ~~p~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~ 95 (202)
T PLN00120 41 QAPLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDI 95 (202)
T ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCcc
Confidence 45778899999973 7899999999999999999999999999996 4444443
No 29
>PHA02337 putative high light inducible protein
Probab=97.94 E-value=7.3e-06 Score=54.70 Aligned_cols=28 Identities=32% Similarity=0.233 Sum_probs=26.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhhccCCcc
Q 023372 226 VKEIKNGRLAMFAMLGFFLQAYVTGEGP 253 (283)
Q Consensus 226 ~~ElkNGRLAMlA~~G~~~q~~~tg~gp 253 (283)
.+|+-|||+||++|+..+..+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999864
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.60 E-value=4.1e-05 Score=67.79 Aligned_cols=46 Identities=35% Similarity=0.388 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhhhcc-CCcchhhhhhhhCCcc
Q 023372 220 QFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDPF 265 (283)
Q Consensus 220 ~~~~~k~~ElkNGRLAMlA~~G~~~q~~~t-g~gp~~~l~~~~~~P~ 265 (283)
+.++.|..|+.||||||++|+--++.|.+| |+|++.|+...-.-|.
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi 177 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPV 177 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcc
Confidence 466778889999999999999999999999 9999999875544443
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.39 E-value=9.4e-05 Score=68.09 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=33.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhh
Q 023372 224 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 260 (283)
Q Consensus 224 ~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~ 260 (283)
+...|+-|||+|||||+..++.+++||+|.+.|+.+.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 3568999999999999999999999999999998764
No 32
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=47.44 E-value=6.2 Score=36.96 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=16.6
Q ss_pred chhhhhccccchhhhhhc
Q 023372 121 SKWAMLGAAGFIIPEAFN 138 (283)
Q Consensus 121 ~R~AMLAvvG~lv~E~l~ 138 (283)
||+||+|++-.++.|++.
T Consensus 167 GR~AMiGFvaal~~E~~T 184 (250)
T PLN00014 167 GRAAMVGFFMAYLVDSLT 184 (250)
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 799999999999999875
No 33
>PLN02449 ferrochelatase
Probab=37.15 E-value=22 Score=36.51 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhhhhccCCcch
Q 023372 234 LAMFAMLGFFLQAYVTGEGPV 254 (283)
Q Consensus 234 LAMlA~~G~~~q~~~tg~gp~ 254 (283)
+||+||+.+++-++++|+||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999986
Done!