Query 023372
Match_columns 283
No_of_seqs 234 out of 1044
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 9.5E-58 3.2E-62 414.0 13.2 205 72-283 13-232 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.9E-58 6.5E-63 420.0 3.9 185 74-273 5-242 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 6.9E-53 2.4E-57 389.0 -1.6 185 71-275 55-268 (269)
4 2wsc_3 LHCA3, type II chloroph 100.0 8.7E-51 3E-55 376.2 4.3 188 76-275 52-275 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 3.6E-51 1.2E-55 374.6 -1.4 180 72-275 44-250 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 3.4E-49 1.2E-53 359.6 4.0 182 79-274 44-238 (241)
7 2bhw_A Chlorophyll A-B binding 99.5 2.3E-14 8E-19 129.7 6.1 50 201-250 37-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 1.4E-14 4.6E-19 132.7 -0.4 54 201-254 67-121 (251)
9 2wsc_2 LHCA2, type II chloroph 99.4 2.3E-14 8E-19 132.3 -0.7 54 201-254 78-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.3 2.8E-13 9.5E-18 123.4 2.7 50 201-250 25-118 (243)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 2.2E-13 7.5E-18 124.0 0.8 50 201-250 59-109 (241)
12 2wsc_3 LHCA3, type II chloroph 99.2 7.1E-13 2.4E-17 122.8 -3.4 53 201-254 70-129 (276)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=9.5e-58 Score=414.02 Aligned_cols=205 Identities=50% Similarity=0.921 Sum_probs=174.7
Q ss_pred hhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccCC
Q 023372 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFG 141 (283)
Q Consensus 72 ~~~~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~G 141 (283)
.++|||+||++||| +++ .++|+||||++|||||||||||++++|+ |+||||||++|+++||+++++|
T Consensus 13 ~~~~~~~~r~~~l~--~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 13 GSPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp TCTTSSTTCCCTTG--GGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccCCCcccccC--ccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 56899999999994 454 6899999999999999999999988764 6899999999999999998877
Q ss_pred CCCCCCcchhhccccccCCCcccccCCCchh--H-HHHHHHHHHHHHhcceeeeeccCc--cCCCCCCCCCCCCCCCCCC
Q 023372 142 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI--N-LVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAK 216 (283)
Q Consensus 142 ~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi--~-~~~~~~~qvll~G~~E~~r~~~g~--~~~d~~~PG~~FDPLgl~~ 216 (283)
... ++..|+++|...+++..++|++.+... + +..++++|+++||++|.+|+.++. ...|+.||||+||||||.+
T Consensus 90 ~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~ 168 (232)
T 2bhw_A 90 VKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAD 168 (232)
T ss_dssp CCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTC
T ss_pred cCC-cccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhcc
Confidence 543 367899999877766667888765321 2 344557899999999999876522 2246789999999999999
Q ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhhcccccCCCC
Q 023372 217 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 283 (283)
Q Consensus 217 d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~~~~~~~~~~ 283 (283)
|+++++++|++|||||||||+|++|+++|+.+||++|++||.+|++||+++|+++++ .+.+|++
T Consensus 169 ~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~---~~~~~~~ 232 (232)
T 2bhw_A 169 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYA---TNFVPGK 232 (232)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGT---TTTCSCC
T ss_pred chHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHH---HhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999984 4677763
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.9e-58 Score=419.95 Aligned_cols=185 Identities=41% Similarity=0.789 Sum_probs=128.0
Q ss_pred hhcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCcc-----------------------------------
Q 023372 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------------------------- 118 (283)
Q Consensus 74 ~~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe----------------------------------- 118 (283)
.|++++|++|||+ .++|+|||||||||||||||||+++||
T Consensus 5 ~~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (243)
T 3pl9_A 5 SGFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTS 79 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccc
Confidence 3557799999997 899999999999999999999999875
Q ss_pred ------------------ccchhhhhccccchhhhhhccCCCCCCCCcchhhccccccCCCcccccCCCchhHHHHHHHH
Q 023372 119 ------------------DFSKWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 180 (283)
Q Consensus 119 ------------------~l~R~AMLAvvG~lv~E~l~~~G~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~ 180 (283)
.|+||||||++|+++||+++ +..|+++|+..+.+ .++|++.+.++.+..++++
T Consensus 80 ~~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--------g~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~ 150 (243)
T 3pl9_A 80 LQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--------GITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWI 150 (243)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCTTTHHHHHHHS-CEEETTEEECCCHHHHHHH
T ss_pred cccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--------Cccccccccccccc-ccccccCccchhhHHHHHH
Confidence 26899999999999999985 23699998766543 4678887777667777899
Q ss_pred HHHHHhcceeeeeccCccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhh
Q 023372 181 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 260 (283)
Q Consensus 181 qvll~G~~E~~r~~~g~~~~d~~~PG~~FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~ 260 (283)
|+++||++|.+|+.+ .+.++..||||+||||||.+|+++++++|++|||||||||+|++|+++|+++||+||++||.+|
T Consensus 151 qv~lmG~~E~~R~~~-~~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~H 229 (243)
T 3pl9_A 151 EVLVIGYIEFQRNAE-LDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTH 229 (243)
T ss_dssp HHHHHHHHHHHHHSC-CCTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-cCCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 999999999999865 3445668999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcccchHhHhh
Q 023372 261 LSDPFANNLLTVI 273 (283)
Q Consensus 261 ~~~P~~~n~~~~~ 273 (283)
++||+||||++++
T Consensus 230 ladP~~~ni~~~~ 242 (243)
T 3pl9_A 230 LSDPLHTTILDRF 242 (243)
T ss_dssp HHCSGGGSTTTTT
T ss_pred hcCcchhhhhhhc
Confidence 9999999999986
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=6.9e-53 Score=389.01 Aligned_cols=185 Identities=42% Similarity=0.795 Sum_probs=119.9
Q ss_pred hhhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccC
Q 023372 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKF 140 (283)
Q Consensus 71 ~~~~~~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~ 140 (283)
-+..+||++|++|||+ .++|+||||++|||||||||||++++|+ |+||||||++|+++||++++.
T Consensus 55 ~~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~ 129 (269)
T 2wsc_2 55 TVCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKL 129 (269)
T ss_dssp --------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCT
T ss_pred eeecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccC
Confidence 3456899999999997 7899999999999999999999988764 689999999999999999887
Q ss_pred CCCCCCCcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeecc----Cc------------cCCCCCC
Q 023372 141 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL------------DLEDKLH 204 (283)
Q Consensus 141 G~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~----g~------------~~~d~~~ 204 (283)
|... .+.|+++|.. .|+.... .++++|+++||++|.+|+.+ |. ...|..|
T Consensus 130 G~~~--~p~w~~aG~~-------~~~~~~~-----~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~ 195 (269)
T 2wsc_2 130 GILN--TPSWYTAGEQ-------EYFTDTT-----TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGY 195 (269)
T ss_dssp TSSS--CCCCCSTTSS-------SSCCCTT-----SHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSC
T ss_pred Cccc--Cccccccchh-------hhhcchH-----HHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCC
Confidence 7653 3469887642 3454332 23467888899999988643 11 1124579
Q ss_pred CCCC-CCCCCCCC-CHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhh-hhhCCcccchHhHhhhc
Q 023372 205 PGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA-KHLSDPFANNLLTVISG 275 (283)
Q Consensus 205 PG~~-FDPLgl~~-d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~-~~~~~P~~~n~~~~~~~ 275 (283)
|||+ ||||||.+ |+++++++|++|||||||||+||+|+++|+.+||+||++||. +|++|| ||||++++..
T Consensus 196 PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 196 PGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp TTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred CCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 9999 99999985 777899999999999999999999999999999999999999 999999 9999998765
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=8.7e-51 Score=376.16 Aligned_cols=188 Identities=45% Similarity=0.791 Sum_probs=99.8
Q ss_pred cCCCCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------------cchhhhhccccchhhhhhcc
Q 023372 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------------FSKWAMLGAAGFIIPEAFNK 139 (283)
Q Consensus 76 ~g~~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------------l~R~AMLAvvG~lv~E~l~~ 139 (283)
||++|++|||+ .++|+||||++|||||||||||+ ++|+ |+||||||++|++++|+++.
T Consensus 52 ~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl~-d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~ 125 (276)
T 2wsc_3 52 QGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125 (276)
T ss_dssp --------------------------------------C-CCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSS
T ss_pred cCCCccccCCC-----CCCcccccCcCCCccCCCccccC-ChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcc
Confidence 99999999996 78999999999999999999995 4543 46899999999999999987
Q ss_pred CCCCCCC-CcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeecc----Cc--------------cCC
Q 023372 140 FGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL--------------DLE 200 (283)
Q Consensus 140 ~G~~~~p-~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~----g~--------------~~~ 200 (283)
.|..... ...|++++.+... +..+|++++.. ++++|+++||++|.+|+.+ |. ...
T Consensus 126 ~g~~~~~~p~~w~~~g~ip~a-G~~~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~ 199 (276)
T 2wsc_3 126 AGLIPQETALPWFRTGFIPPA-GTYNYWADSYT-----LFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSG 199 (276)
T ss_dssp CCCCCCSSCCSSSSCCCC------CCCSCCCCS-----TTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCS
T ss_pred cccccccCcchhhhhhcccch-hHHHHhccchH-----HHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccc
Confidence 7654321 2359987654322 34567765532 3467888899999988653 11 112
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhhc
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 275 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~~ 275 (283)
|..||||+ ||||||.+|+++++++|++|||||||||+|++|+++|+.+||++|++||.+|++||+||||++++..
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 45799998 9999999888889999999999999999999999999999999999999999999999999999864
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=3.6e-51 Score=374.60 Aligned_cols=180 Identities=39% Similarity=0.742 Sum_probs=114.1
Q ss_pred hhhhcCC-CCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccC
Q 023372 72 LAKWYGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKF 140 (283)
Q Consensus 72 ~~~~~g~-~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~ 140 (283)
...+|++ ||++|+|+ .++|+||||++|||||||||||++++|+ |+||||||++|++++|+++..
T Consensus 44 ~~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~ 118 (251)
T 2wsc_4 44 SASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSI 118 (251)
T ss_dssp ------------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCS
T ss_pred cccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCC
Confidence 3468999 89999997 7899999999999999999999988764 589999999999999999887
Q ss_pred CCCCCCCcchhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhcceeeeecc----Ccc------------CCCCCC
Q 023372 141 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLD------------LEDKLH 204 (283)
Q Consensus 141 G~~~~p~~~W~~aG~~~l~g~~l~y~g~~~pi~~~~~~~~qvll~G~~E~~r~~~----g~~------------~~d~~~ 204 (283)
|... .+.|+++|.. +|++.+.. ++++|+++||++|.+|+.+ |.. ..|..|
T Consensus 119 g~~~--~p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~y 184 (251)
T 2wsc_4 119 GIIN--VPKWYAAGKE-------EYFASSST-----LFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGY 184 (251)
T ss_dssp CSSC--CCCCSCCCSS-------SCSSCSSC-----TTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHS
T ss_pred CccC--CccccccchH-------hhhccchH-----HHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccC
Confidence 7543 3469887643 45554321 2357888899999988653 110 012368
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcchhhhhhhhCCcccchHhHhhhc
Q 023372 205 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 275 (283)
Q Consensus 205 PG~~FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~~~l~~~~~~P~~~n~~~~~~~ 275 (283)
|||+||||++.+ ++++|+|||||||| ||||+||++|+.+||++|++||.+|++||+|||+++++.+
T Consensus 185 PGg~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 185 PGGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp SCCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred CCCccCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 999999999975 66789999999999 9999999999999999999999999999999999998764
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=3.4e-49 Score=359.57 Aligned_cols=182 Identities=42% Similarity=0.782 Sum_probs=129.1
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccc----------cchhhhhccccchhhhhhccCCCCCCCCc
Q 023372 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------FSKWAMLGAAGFIIPEAFNKFGANCGPEA 148 (283)
Q Consensus 79 ~R~~~lP~g~~~~~~~P~~LdGslpGD~GFDPLGLs~~pe~----------l~R~AMLAvvG~lv~E~l~~~G~~~~p~~ 148 (283)
.|.+|+|+ .++|+||||++|||||||||||++++|+ |+||||||++|+++||+++. .
T Consensus 44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~ 110 (241)
T 2wsc_1 44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------G 110 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C
T ss_pred cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------C
Confidence 46789997 8899999999999999999999998764 68999999999999999763 2
Q ss_pred chhhcccc-ccCCCcccccCCCchh-HHHHHHHHHHHHHhcceeeeeccCccCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 023372 149 VWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 226 (283)
Q Consensus 149 ~W~~aG~~-~l~g~~l~y~g~~~pi-~~~~~~~~qvll~G~~E~~r~~~g~~~~d~~~PG~~FDPLgl~~d~~~~~~~k~ 226 (283)
.|++++.. .++++...|++.+.++ .+..++++|+++||++|.+|+.+ .+.+++.||||.|||||+.+|+++++++|+
T Consensus 111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~-~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~ 189 (241)
T 2wsc_1 111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKKYPGGAFDPLGYSKDPKKLEELKV 189 (241)
T ss_dssp -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSC-CSSCCSSSCSCCSCSSSCSCSSSSCCCSCT
T ss_pred ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCCCCCCcccccccccchhHHHHHHH
Confidence 46665432 3445556777766554 24455688999999999998754 234567899999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHhhh-hccCCcchhhhhhhhCCcccchHhHhhh
Q 023372 227 KEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVIS 274 (283)
Q Consensus 227 ~ElkNGRLAMlA~~G~~~q~-~~tg~gp~~~l~~~~~~P~~~n~~~~~~ 274 (283)
+|||||||||+|++|+++|+ .+||+||++||.+|++||+||||++++.
T Consensus 190 ~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~ 238 (241)
T 2wsc_1 190 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238 (241)
T ss_dssp THHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC--------
T ss_pred hhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeec
Confidence 99999999999999999999 5899999999999999999999999864
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.48 E-value=2.3e-14 Score=129.73 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=47.0
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccC
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg 250 (283)
|+.+|||+ ||||||++|+++++++|+.||||||+||+|++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 56789999 999999999999999999999999999999999999998764
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.42 E-value=1.4e-14 Score=132.67 Aligned_cols=54 Identities=39% Similarity=0.677 Sum_probs=39.2
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcch
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~ 254 (283)
++.+|||+ ||||||++|+++++++|.+||||||+||+|++|+++|+++++.|.+
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 45689999 9999999999999999999999999999999999999999998766
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.39 E-value=2.3e-14 Score=132.25 Aligned_cols=54 Identities=35% Similarity=0.618 Sum_probs=36.2
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccCCcch
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~ 254 (283)
++.+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|+++++.|.+
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 45689999 9999999999999999999999999999999999999998876544
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.33 E-value=2.8e-13 Score=123.37 Aligned_cols=50 Identities=36% Similarity=0.522 Sum_probs=28.4
Q ss_pred CCCCCCCC-CCCCCCCCCHHH-------------------------------------------HHHHHHHHHhhhhhHH
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQ-------------------------------------------FALLKVKEIKNGRLAM 236 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~-------------------------------------------~~~~k~~ElkNGRLAM 236 (283)
|+.+|||+ ||||||++|+|. ++++|+.||||||+||
T Consensus 25 dGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwAM 104 (243)
T 3pl9_A 25 DGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAM 104 (243)
T ss_dssp ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhhcchhHH
Confidence 56789999 999999998862 7899999999999999
Q ss_pred HHHHHHHhhhhccC
Q 023372 237 FAMLGFFLQAYVTG 250 (283)
Q Consensus 237 lA~~G~~~q~~~tg 250 (283)
+|++|++++|+++|
T Consensus 105 LAvlG~lvpE~l~g 118 (243)
T 3pl9_A 105 LATLGALTVEGLTG 118 (243)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHhHHhhcC
Confidence 99999999999875
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.31 E-value=2.2e-13 Score=124.02 Aligned_cols=50 Identities=34% Similarity=0.512 Sum_probs=45.5
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhccC
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 250 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~~~~k~~ElkNGRLAMlA~~G~~~q~~~tg 250 (283)
++..|||+ ||||||++|+++++++|++||||||+||+|++|+++|++++.
T Consensus 59 ~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp --CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred cCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 45789999 999999999999999999999999999999999999998653
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.18 E-value=7.1e-13 Score=122.77 Aligned_cols=53 Identities=40% Similarity=0.617 Sum_probs=35.3
Q ss_pred CCCCCCCC-CCCCCCCCCHHHH------HHHHHHHHhhhhhHHHHHHHHHhhhhccCCcch
Q 023372 201 DKLHPGGP-FDPLGLAKDPDQF------ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 254 (283)
Q Consensus 201 d~~~PG~~-FDPLgl~~d~~~~------~~~k~~ElkNGRLAMlA~~G~~~q~~~tg~gp~ 254 (283)
++..|||+ |||||| +|++++ +++|.+||||||+||+|++|+++++++++.+.+
T Consensus 70 ~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 70 DGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp ----------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred cCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 45679999 999999 678888 999999999999999999999999999887643
Done!