BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023374
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OS8|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 71 KSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
K+ G K ++ E ++AFT + NRD ++D+N K +F SL P
Sbjct: 4 KAASGVLTKLPQKQIQEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTP 52
>pdb|3PN7|B Chain B, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|E Chain E, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|B Chain B, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|E Chain E, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
Length = 161
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 87 ETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
E ++AFT + NRD ++D+N K +F SL P
Sbjct: 24 EMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTP 56
>pdb|3TUY|B Chain B, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|E Chain E, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 161
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 87 ETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
E ++AFT + NRD ++D+N K +F SL P
Sbjct: 24 EMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTP 56
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKV 121
A++ R DRLL A P E N DC+V AN+ + D+LR K+
Sbjct: 266 AEVPRAADRLLAL--AGEPRE-NIDCFVLHQANRFMLDALRKKMKI 308
>pdb|2EC6|B Chain B, Placopecten Striated Muscle Myosin Ii
Length = 133
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 87 ETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
E ++AFT + NRD ++D+N K F SL P
Sbjct: 3 EMKEAFTMIDQNRDGFIDINDLKEEFSSLGRTP 35
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 165 VMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRV--PIKADDDLKLLFRDIALPSDMLDI 222
++ ++ L+A Q+++++ + + I DP + P + D K LF + P+D L I
Sbjct: 134 LLTEMDGLEARQQVFIMAATNRPDII----DPAILRPGRLD---KTLFVGLPPPADRLAI 186
Query: 223 EKDLQKNGMKP 233
K + KNG KP
Sbjct: 187 LKTITKNGTKP 197
>pdb|3SFV|B Chain B, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 344
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 152 GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFR 211
G V LKD++ + +D + ++ GQ +LL Q D A NDP KA D
Sbjct: 105 GNPVSSLKDAHLAINKDQEVVEHKGQFYLLQK--GQWD-AIKNDPAALEKAQKDYSQSKH 161
Query: 212 DIA 214
D+A
Sbjct: 162 DLA 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,797,995
Number of Sequences: 62578
Number of extensions: 252416
Number of successful extensions: 668
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 14
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)