BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023374
(283 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54KJ8|T2EB_DICDI General transcription factor IIE subunit 2 OS=Dictyostelium
discoideum GN=gtf2e2 PE=3 SV=1
Length = 276
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 140/270 (51%), Gaps = 22/270 (8%)
Query: 10 FKKQQEKCQETLSNIAAKSGASRATTTSRP---TPAAASTAARSSPPVKFSNDTERLQHI 66
FK+ Q K ETL++I S ++ + P +S+A R S ++ +T R + +
Sbjct: 6 FKETQMKAIETLNSIKKPSSSTNSAFKYIPKISGGGGSSSANRQSSI--YTANTLRDKQV 63
Query: 67 NSIRKSPVGAQIKRVIDRL--LETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD 124
++ P + +++ L LE A T E ++ ++ ++ + + LRNN K+
Sbjct: 64 ---KEKPSNRIVYDIVNYLKTLEGIPADTKEIMHSTNHM-IDDKPEILELLRNNEKIIDH 119
Query: 125 GK-RFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSN 183
G RFS+K K +++ + +L L+ +P GI V +L +SY D++ LK QI+ +
Sbjct: 120 GNDRFSFKPKFNVRTQRDILDLLPNYPGGILVSELAESYNNAESDVKKLKETKQIFAIKA 179
Query: 184 FDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAA 243
+S DI +PND R+ + +L +++ I LP++ D+EK+++ G+ + + R
Sbjct: 180 AESACDIIFPNDERLRVPLSSELVDMWKSIKLPNEA-DLEKEMKDAGLSVVESVESAR-- 236
Query: 244 AQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
Q S+K K ++KK + TK+TN H+
Sbjct: 237 ---QTKSTKLKKERKK----RITKVTNTHI 259
>sp|P79011|T2EB_SCHPO Transcription initiation factor IIE subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfa2 PE=1 SV=2
Length = 285
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 20/206 (9%)
Query: 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFSYKSK 133
+Q+ ++ L E + T EEI Y+ + + L+ N +++YD + F++K
Sbjct: 81 SQLHYAVEYLKERNEPKTAEEI--ASYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPL 138
Query: 134 HDLKDKSQLLVLV--RKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDI 190
H+++ + LL + +K G+++ +L+D +P V +L+ L+ G++ LL + D +
Sbjct: 139 HNIRSGAGLLAYLDSQKTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKM 198
Query: 191 AYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT---NTQKRRAAAQIQ 247
+ ND D + + ++ +I +P LD+ +L K G+KP + +T KR Q
Sbjct: 199 VWRNDKSCDCHVDKEFQQVWHEIPIPP-TLDLASELGKYGLKPTSVDPSTVKRAGHNQT- 256
Query: 248 GISSKNKPKKKKHEISKRTKLTNAHL 273
PK+KK + ++R K+TN HL
Sbjct: 257 -------PKQKKPK-TRRGKITNTHL 274
>sp|Q2KJF9|T2EB_BOVIN General transcription factor IIE subunit 2 OS=Bos taurus GN=GTF2E2
PE=2 SV=1
Length = 289
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 95 LTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 154
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
+ + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 155 QHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 214
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ ++ ++ A I + KP +K +R
Sbjct: 215 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQDSGPKKVAP----IQRRKKPASQK---KRR 267
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 268 FKTHNEHL 275
>sp|Q9D902|T2EB_MOUSE General transcription factor IIE subunit 2 OS=Mus musculus
GN=Gtf2e2 PE=2 SV=2
Length = 292
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 15/189 (7%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 98 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 157
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
+ G+ I L+D + +A+KA G QI +S D ++ I + ND D++
Sbjct: 158 NHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 216
Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK 264
+ L+R + + S D IE+ L++ G+ + ++ A+ I + KP +K +
Sbjct: 217 FQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAS----IQRRKKPASQK---KR 269
Query: 265 RTKLTNAHL 273
R K N HL
Sbjct: 270 RFKTHNEHL 278
>sp|P29084|T2EB_HUMAN Transcription initiation factor IIE subunit beta OS=Homo sapiens
GN=GTF2E2 PE=1 SV=1
Length = 291
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 241
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N HL
Sbjct: 242 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>sp|P29540|T2EB_XENLA General transcription factor IIE subunit 2 OS=Xenopus laevis
GN=gtf2e2 PE=2 SV=1
Length = 288
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 20/147 (13%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L NNPK+ ++++K K++LKDK LL L+ K + GI + D+++ P +
Sbjct: 119 EALVNNPKIEIIDGKYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNAQKA 178
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEK---- 224
++AL QI ++ D ++ I + ND D++ + L+R + P D +D EK
Sbjct: 179 IKAL--GDQIVFVTRPDKKK-ILFYNDKSCQFTVDEEFQKLWRSV--PVDSMDDEKIEEY 233
Query: 225 -------DLQKNGMKPATNTQKRRAAA 244
+Q++G K QKR+ A
Sbjct: 234 LKRQGISSMQESGPKKIIPVQKRKKAT 260
>sp|P36145|T2EB_YEAST Transcription initiation factor IIE subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFA2 PE=1
SV=3
Length = 328
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + V + L+ ++ +D K+ F Y S +D+ S+LL L+R F +GI+
Sbjct: 150 YLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLLRSQVTF-KGISCK 208
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
DLKD +P E + L+ +I +L + D + N D++ ++ ++ L
Sbjct: 209 DLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQL 268
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ G+KPA+ A I+ + + + KKK+ ++ K+TN H+
Sbjct: 269 PQ-FAELPRKLQDLGLKPAS-----VDPATIKRQTKRVEVKKKRQ---RKGKITNTHMTG 319
Query: 276 LFQ 278
+ +
Sbjct: 320 ILK 322
>sp|A9A9U4|EF2_METM6 Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=fusA PE=3 SV=1
Length = 727
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 53 PVKFSNDTERLQHINSIRKSP--VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKA 110
PV F N +RL IN ++ +P + + ++I + + + PEE +D DV K
Sbjct: 143 PVLFINKVDRL--INELKLTPEELQGRFMKIIAEVNKLIEKMAPEEFKKDWLCDVVTGKV 200
Query: 111 VFDSLRNN 118
F S NN
Sbjct: 201 AFGSAYNN 208
>sp|A7INH1|RL13_XANP2 50S ribosomal protein L13 OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=rplM PE=3 SV=1
Length = 153
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 92 FTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE 151
+TP D V VNA KAVF + + KV+Y F +K+++ VL +FPE
Sbjct: 44 YTPHVDCGDNIVVVNAEKAVFTGRKKDQKVYYHHTGFP----GGIKERTAKFVLEGRFPE 99
>sp|P59353|Y2091_VIBVU UPF0229 protein VV1_2091 OS=Vibrio vulnificus (strain CMCP6)
GN=VV1_2091 PE=3 SV=1
Length = 423
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 200 IKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISS 251
I D+ L LLF D+ALP +L+KN + T +K RA Q G+ S
Sbjct: 119 ISKDEYLDLLFEDLALP--------NLKKNQVNKITEWKKHRAGYQTAGMPS 162
>sp|Q7MJ13|Y2350_VIBVY UPF0229 protein VV2350 OS=Vibrio vulnificus (strain YJ016)
GN=VV2350 PE=3 SV=1
Length = 423
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 200 IKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISS 251
I D+ L LLF D+ALP +L+KN + T +K RA Q G+ S
Sbjct: 119 ISKDEYLDLLFEDLALP--------NLKKNQVNKITEWKKHRAGYQTAGMPS 162
>sp|A6VGV5|EF2_METM7 Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=fusA PE=3 SV=1
Length = 727
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 53 PVKFSNDTERLQHINSIRKSP--VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKA 110
PV F N +RL IN ++ +P + + ++I + + + PEE ++ DV K
Sbjct: 143 PVLFINKVDRL--INELKLTPEELQGRFMKIIAEVNKLIEKMAPEEFKKEWLCDVVTGKV 200
Query: 111 VFDSLRNN 118
F S NN
Sbjct: 201 AFGSAYNN 208
>sp|Q5URA8|YL876_MIMIV Uncharacterized protein L876 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L876 PE=3 SV=1
Length = 413
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 49 RSSPPVKFSNDTERLQHINSIRK-SPVGAQIKRVIDRLLETRQAF 92
+S PP+ F NDTE N IR+ S GA + + D L++T + +
Sbjct: 352 KSIPPIDFKNDTELEIDKNFIRELSGYGADVDKCFDELIKTAKYY 396
>sp|P09604|EF2_METVS Elongation factor 2 OS=Methanococcus vannielii (strain SB / ATCC
35089 / DSM 1224) GN=fusA PE=3 SV=2
Length = 727
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 53 PVKFSNDTERLQHINSIRKSP--VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKA 110
PV F N +RL IN ++ +P + + ++I + + + PEE ++ DV K
Sbjct: 143 PVLFINKVDRL--INELKLTPEELQGRFMKIIAEVNKLIEKMAPEEFKKEWLCDVVTGKV 200
Query: 111 VFDSLRNN 118
F S NN
Sbjct: 201 AFGSAYNN 208
>sp|P04112|MLRB_MIZYE Myosin regulatory light chain B, smooth adductor muscle
OS=Mizuhopecten yessoensis PE=1 SV=1
Length = 156
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 87 ETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
E ++AFT + NRD ++D+N K +F SL P
Sbjct: 19 EMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTP 51
>sp|Q6LXI2|EF2_METMP Elongation factor 2 OS=Methanococcus maripaludis (strain S2 / LL)
GN=fusA PE=3 SV=1
Length = 727
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 53 PVKFSNDTERLQHINSIRKSP--VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKA 110
PV F N +RL IN ++ +P + + ++I + + + PEE ++ DV K
Sbjct: 143 PVLFINKVDRL--INELKLTPEELQGRFMKIIAEVNKLIEKMAPEEFKKEWLCDVANGKV 200
Query: 111 VFDSLRNN-----PKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDL 158
F S NN P + G S+K D ++ L K P V+D+
Sbjct: 201 AFGSAYNNWAISVPYMQRSG--ISFKDIIDYCEQENQKELAEKAPLHEVVLDM 251
>sp|P04113|MLRA_MIZYE Myosin regulatory light chain A, smooth adductor muscle
OS=Mizuhopecten yessoensis PE=1 SV=1
Length = 161
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 87 ETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
E ++AFT + NRD ++D+N K +F SL P
Sbjct: 24 EMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTP 56
>sp|Q9KQX4|Y1873_VIBCH UPF0229 protein VC_1873 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=VC_1873 PE=3 SV=1
Length = 423
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 200 IKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGI-SSKNKPKKK 258
I D+ L +LF D+ALP +L+KN + T + RA Q G+ S+ + +
Sbjct: 119 ISKDEYLDILFEDLALP--------NLKKNQVNKITEWKTHRAGFQTSGVPSNISVVRSL 170
Query: 259 KHEISKRTKLT 269
+ +++RT +T
Sbjct: 171 QQSLARRTAMT 181
>sp|Q2IIA8|DNAE2_ANADE Error-prone DNA polymerase OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=dnaE2 PE=3 SV=1
Length = 1132
Score = 32.0 bits (71), Expect = 4.7, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 68 SIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSL---RNNPKVHYD 124
++ + V + RV+ R+ P + D + A + + D L R+ V
Sbjct: 162 AVARHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVRHGTTVDRA 221
Query: 125 GKRFSYKSKHDLKDKSQLLVLVRKFPEGI-AVIDLKDSYPTVMEDLQA 171
G+R ++ LK +L L FPEG+ A D+ D ME+++
Sbjct: 222 GRRLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEEIRG 269
>sp|B8JAF5|DNAE2_ANAD2 Error-prone DNA polymerase OS=Anaeromyxobacter dehalogenans (strain
2CP-1 / ATCC BAA-258) GN=dnaE2 PE=3 SV=1
Length = 1142
Score = 32.0 bits (71), Expect = 4.8, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 68 SIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSL---RNNPKVHYD 124
++ + V + RV+ R+ P + D + A + + D L R+ V
Sbjct: 162 AVTRHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVRHGTTVDRA 221
Query: 125 GKRFSYKSKHDLKDKSQLLVLVRKFPEGI-AVIDLKDSYPTVMEDLQA 171
G+R ++ LK +L L FPEG+ A D+ D ME+++
Sbjct: 222 GRRLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEEIRG 269
>sp|A8I7Z7|RL13_AZOC5 50S ribosomal protein L13 OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=rplM PE=3 SV=1
Length = 153
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 89 RQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRK 148
R FTP D V +NA K V + + KV+Y F +K+++ +L +
Sbjct: 41 RATFTPHVDTGDNVVVINAEKVVLTGRKRDQKVYYHHTGFP----GGIKERTAKFILDGR 96
Query: 149 FPE 151
FPE
Sbjct: 97 FPE 99
>sp|A4FWF0|EF2_METM5 Elongation factor 2 OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=fusA PE=3 SV=1
Length = 727
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 53 PVKFSNDTERLQHINSIRKSP--VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKA 110
PV F N +RL IN ++ +P + + ++I + + + PEE + DV K
Sbjct: 143 PVLFINKVDRL--INELKLTPEELQGRFMKIIAEVNKLIEKMAPEEFKTEWLCDVANGKV 200
Query: 111 VFDSLRNN 118
F S NN
Sbjct: 201 AFGSAYNN 208
>sp|A8GFE3|Y2732_SERP5 UPF0229 protein Spro_2732 OS=Serratia proteamaculans (strain 568)
GN=Spro_2732 PE=3 SV=1
Length = 422
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 200 IKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGI-SSKNKPKKK 258
I D+ L LLF D+ALP +L+KN K T + RA G+ ++ + +
Sbjct: 118 ISKDEYLDLLFEDLALP--------NLKKNQYKQLTEYKTHRAGYTANGVPANISVVRSL 169
Query: 259 KHEISKRTKLT 269
++ +++RT +T
Sbjct: 170 QNSLARRTAMT 180
>sp|A1JQJ6|Y2273_YERE8 UPF0229 protein YE2273 OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=YE2273 PE=3 SV=1
Length = 425
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 200 IKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGI-SSKNKPKKK 258
I D+ L LLF D+ALP +L+KN K T + RA G+ ++ + +
Sbjct: 119 ISKDEYLDLLFEDLALP--------NLKKNQYKQLTEFKTHRAGYTSNGVPANISVVRSL 170
Query: 259 KHEISKRTKLTNAHLPEL 276
++ +++RT +T + EL
Sbjct: 171 QNSLARRTAMTASKRREL 188
>sp|C6A4M0|EF2_THESM Elongation factor 2 OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=fusA PE=3 SV=1
Length = 732
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 53 PVKFSNDTERLQHINSIRKSPVGAQ--IKRVIDRLLETRQAFTPEEINRDCYVDVNANKA 110
PV F N +RL I ++ +P Q RVI + + + P E V+VN
Sbjct: 143 PVLFINKVDRL--IKELKLNPQQMQERFVRVITDVNRLIRKYAPAEFKNKWLVNVNDGSV 200
Query: 111 VFDSLRNN-----PKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDL 158
F S N P + G S+K DL + L L +K P + V+D+
Sbjct: 201 AFGSAYYNWALSVPYMKKTG--VSFKDIIDLTNAGDLKTLRKKAPLHVVVLDM 251
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,150,580
Number of Sequences: 539616
Number of extensions: 4102524
Number of successful extensions: 13387
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 13345
Number of HSP's gapped (non-prelim): 77
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)