Query 023374
Match_columns 283
No_of_seqs 135 out of 206
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:42:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d8j_A General transcription f 99.5 8.6E-15 2.9E-19 111.6 6.6 67 71-137 6-81 (81)
2 2dk8_A DNA-directed RNA polyme 95.0 0.044 1.5E-06 41.5 5.8 46 139-184 16-66 (81)
3 3cuq_B Vacuolar protein-sortin 85.1 12 0.0004 32.7 11.9 110 73-183 76-203 (218)
4 2vxz_A Pyrsv_GP04; viral prote 84.9 0.44 1.5E-05 40.2 2.4 70 139-212 13-86 (165)
5 2htj_A P fimbrial regulatory p 82.5 4.2 0.00014 29.1 6.7 57 139-196 2-62 (81)
6 2jt1_A PEFI protein; solution 79.6 4.5 0.00015 29.7 6.0 50 139-188 6-64 (77)
7 2heo_A Z-DNA binding protein 1 74.1 1.6 5.4E-05 30.9 2.1 50 79-128 13-63 (67)
8 2jt1_A PEFI protein; solution 69.5 2.7 9.2E-05 31.0 2.5 48 78-125 6-58 (77)
9 1lva_A Selenocysteine-specific 69.3 6 0.00021 35.0 5.2 137 81-234 7-158 (258)
10 2heo_A Z-DNA binding protein 1 66.2 8.6 0.00029 26.9 4.5 42 139-180 12-57 (67)
11 2fu4_A Ferric uptake regulatio 65.8 8.9 0.00031 27.2 4.7 48 139-186 19-76 (83)
12 2lnb_A Z-DNA-binding protein 1 65.1 2.6 8.9E-05 31.6 1.6 47 78-124 21-67 (80)
13 1j5y_A Transcriptional regulat 63.7 6.3 0.00022 32.9 4.0 59 76-134 21-80 (187)
14 2dk5_A DNA-directed RNA polyme 62.8 15 0.00052 27.5 5.6 64 134-197 16-88 (91)
15 1qgp_A Protein (double strande 61.8 15 0.00052 26.5 5.3 43 140-182 17-65 (77)
16 1xmk_A Double-stranded RNA-spe 61.7 22 0.00074 26.2 6.2 51 138-193 12-67 (79)
17 1qbj_A Protein (double-strande 61.6 13 0.00043 27.4 4.9 44 139-182 12-61 (81)
18 2v9v_A Selenocysteine-specific 61.0 8.1 0.00028 30.0 4.0 102 81-182 7-123 (135)
19 2pjp_A Selenocysteine-specific 60.0 1.9 6.6E-05 33.8 0.1 94 78-177 9-109 (121)
20 2pi2_A Replication protein A 3 59.4 1.9 6.6E-05 38.7 0.0 44 139-182 209-259 (270)
21 1u5t_B Defective in vacuolar p 57.4 48 0.0017 27.7 8.4 103 89-194 36-164 (169)
22 1p6r_A Penicillinase repressor 56.1 30 0.001 24.3 6.1 52 140-194 12-71 (82)
23 1mkm_A ICLR transcriptional re 55.8 13 0.00044 32.2 4.8 59 74-132 6-65 (249)
24 1w7p_D VPS36P, YLR417W; ESCRT- 54.9 43 0.0015 33.4 8.8 94 90-185 433-552 (566)
25 2xvc_A ESCRT-III, SSO0910; cel 54.9 40 0.0014 23.8 6.1 47 134-180 7-57 (59)
26 2fu4_A Ferric uptake regulatio 54.4 7.8 0.00027 27.6 2.6 50 74-123 15-70 (83)
27 2hzt_A Putative HTH-type trans 53.7 30 0.001 25.8 6.0 51 141-193 18-73 (107)
28 2g7u_A Transcriptional regulat 51.6 15 0.0005 32.1 4.4 59 75-133 13-71 (257)
29 2fsw_A PG_0823 protein; alpha- 51.6 38 0.0013 25.2 6.3 50 141-192 29-83 (107)
30 3mq0_A Transcriptional repress 50.7 17 0.00058 32.2 4.8 52 75-126 29-80 (275)
31 3u1d_A Uncharacterized protein 50.7 44 0.0015 27.6 7.0 86 138-226 30-134 (151)
32 4a5n_A Uncharacterized HTH-typ 50.2 33 0.0011 27.3 6.0 46 150-195 37-87 (131)
33 1xn7_A Hypothetical protein YH 50.2 26 0.00088 25.6 4.9 42 139-181 4-49 (78)
34 1p6r_A Penicillinase repressor 49.3 13 0.00043 26.4 3.0 59 75-134 8-72 (82)
35 3eco_A MEPR; mutlidrug efflux 48.6 48 0.0016 24.9 6.6 56 140-195 34-95 (139)
36 3tl4_X Glutaminyl-tRNA synthet 48.2 14 0.00049 31.7 3.7 35 75-109 85-119 (187)
37 2p5k_A Arginine repressor; DNA 47.6 23 0.0008 23.5 4.1 50 80-131 9-63 (64)
38 1u5t_A Appears to BE functiona 47.0 1.5E+02 0.0051 26.1 11.3 162 3-184 25-217 (233)
39 2k02_A Ferrous iron transport 46.8 34 0.0012 25.6 5.2 43 139-182 4-50 (87)
40 3bro_A Transcriptional regulat 46.7 55 0.0019 24.5 6.6 57 141-197 38-100 (141)
41 3f6o_A Probable transcriptiona 46.2 15 0.0005 28.1 3.2 83 139-230 20-108 (118)
42 2xrn_A HTH-type transcriptiona 46.2 19 0.00065 31.1 4.2 55 76-130 6-62 (241)
43 2o0y_A Transcriptional regulat 46.1 11 0.00038 33.0 2.7 57 75-132 22-78 (260)
44 2dk8_A DNA-directed RNA polyme 45.8 12 0.00042 27.9 2.5 56 78-133 16-74 (81)
45 3r0a_A Putative transcriptiona 45.7 12 0.00041 29.1 2.6 67 78-148 28-102 (123)
46 2ia2_A Putative transcriptiona 45.5 9.9 0.00034 33.4 2.3 59 75-133 20-78 (265)
47 1z7u_A Hypothetical protein EF 44.3 48 0.0016 24.9 5.9 50 141-192 26-80 (112)
48 3jth_A Transcription activator 43.9 58 0.002 23.4 6.1 53 139-195 25-81 (98)
49 3cuo_A Uncharacterized HTH-typ 43.3 81 0.0028 22.2 6.8 54 139-195 26-83 (99)
50 1oyi_A Double-stranded RNA-bin 43.1 11 0.00036 28.3 1.8 52 72-125 13-64 (82)
51 1z91_A Organic hydroperoxide r 41.4 39 0.0013 25.7 5.1 72 141-213 44-122 (147)
52 3bpv_A Transcriptional regulat 41.1 45 0.0015 24.9 5.3 55 141-196 33-92 (138)
53 2k4b_A Transcriptional regulat 40.5 45 0.0015 25.2 5.1 56 134-192 31-95 (99)
54 1qbj_A Protein (double-strande 40.4 30 0.001 25.3 4.0 47 79-125 13-61 (81)
55 3lmm_A Uncharacterized protein 40.2 19 0.00065 35.8 3.7 101 76-178 430-560 (583)
56 2k4b_A Transcriptional regulat 39.6 22 0.00077 26.9 3.2 55 78-133 37-97 (99)
57 3r4k_A Transcriptional regulat 39.4 11 0.00036 33.2 1.5 57 76-132 6-62 (260)
58 2gxg_A 146AA long hypothetical 39.3 73 0.0025 24.0 6.3 54 141-196 41-99 (146)
59 2kko_A Possible transcriptiona 39.2 60 0.002 24.2 5.6 46 139-188 27-76 (108)
60 1sd4_A Penicillinase repressor 38.8 89 0.0031 23.2 6.7 58 133-193 5-71 (126)
61 1yyv_A Putative transcriptiona 38.7 57 0.002 25.5 5.7 49 142-192 40-93 (131)
62 3k2z_A LEXA repressor; winged 38.3 18 0.00063 30.1 2.8 48 78-125 11-58 (196)
63 3bj6_A Transcriptional regulat 38.0 72 0.0025 24.3 6.1 54 141-195 44-102 (152)
64 2g9w_A Conserved hypothetical 37.6 69 0.0024 24.8 6.0 52 140-193 12-71 (138)
65 3u2r_A Regulatory protein MARR 37.6 46 0.0016 26.2 5.0 56 141-196 50-111 (168)
66 2hr3_A Probable transcriptiona 37.0 57 0.002 24.7 5.4 55 141-195 39-98 (147)
67 1lj9_A Transcriptional regulat 36.9 97 0.0033 23.2 6.7 55 141-196 33-92 (144)
68 3f6v_A Possible transcriptiona 36.8 15 0.00053 29.7 2.0 69 139-212 60-132 (151)
69 1y0u_A Arsenical resistance op 36.8 42 0.0014 24.3 4.3 52 79-133 34-85 (96)
70 3bja_A Transcriptional regulat 36.7 1.2E+02 0.004 22.5 7.1 55 141-196 37-96 (139)
71 1ub9_A Hypothetical protein PH 36.1 77 0.0026 22.3 5.7 44 140-184 19-66 (100)
72 3dp7_A SAM-dependent methyltra 35.8 23 0.00079 32.2 3.3 52 81-132 40-91 (363)
73 1lva_A Selenocysteine-specific 35.8 1.8E+02 0.0062 25.2 9.1 101 74-178 139-246 (258)
74 2bv6_A MGRA, HTH-type transcri 35.2 1.1E+02 0.0038 22.9 6.8 46 141-187 41-90 (142)
75 3nqo_A MARR-family transcripti 34.6 81 0.0028 25.6 6.2 57 141-197 45-107 (189)
76 3s2w_A Transcriptional regulat 34.2 97 0.0033 23.9 6.4 55 141-196 54-113 (159)
77 3deu_A Transcriptional regulat 34.2 58 0.002 25.8 5.2 57 141-197 57-118 (166)
78 2y75_A HTH-type transcriptiona 33.9 1E+02 0.0035 23.4 6.4 69 79-148 12-86 (129)
79 3fm5_A Transcriptional regulat 33.8 36 0.0012 26.2 3.7 45 140-184 42-90 (150)
80 2frh_A SARA, staphylococcal ac 33.3 48 0.0017 25.2 4.3 60 134-193 33-99 (127)
81 2xig_A Ferric uptake regulatio 33.2 34 0.0012 27.4 3.6 61 71-131 22-90 (150)
82 2rdp_A Putative transcriptiona 33.0 81 0.0028 23.9 5.7 53 141-194 46-103 (150)
83 2eth_A Transcriptional regulat 32.5 89 0.003 24.0 5.9 55 141-196 48-107 (154)
84 2d1h_A ST1889, 109AA long hypo 32.5 42 0.0014 24.0 3.7 39 146-184 30-72 (109)
85 3oop_A LIN2960 protein; protei 32.5 69 0.0024 24.2 5.2 56 141-197 41-101 (143)
86 3k0l_A Repressor protein; heli 31.8 1.3E+02 0.0044 23.3 6.8 55 141-196 50-109 (162)
87 2fbh_A Transcriptional regulat 31.7 93 0.0032 23.3 5.8 58 140-197 40-102 (146)
88 3r0a_A Putative transcriptiona 31.1 1.2E+02 0.0043 23.0 6.4 61 134-194 22-90 (123)
89 3mwm_A ZUR, putative metal upt 31.1 33 0.0011 27.2 3.1 60 72-131 10-77 (139)
90 1qgp_A Protein (double strande 30.9 29 0.00098 25.0 2.4 47 79-125 17-65 (77)
91 3cjn_A Transcriptional regulat 30.6 1.3E+02 0.0045 23.1 6.6 54 141-195 56-114 (162)
92 1sfx_A Conserved hypothetical 30.3 86 0.0029 22.1 5.1 53 140-193 23-79 (109)
93 2o03_A Probable zinc uptake re 29.9 42 0.0014 26.1 3.5 58 74-131 9-74 (131)
94 4aik_A Transcriptional regulat 29.9 1.3E+02 0.0045 23.5 6.6 65 134-198 27-97 (151)
95 3cuq_A Vacuolar-sorting protei 29.3 2.9E+02 0.01 24.2 12.2 96 88-184 91-204 (234)
96 3pqk_A Biofilm growth-associat 29.1 1.6E+02 0.0055 21.1 6.8 65 80-148 27-93 (102)
97 2qvo_A Uncharacterized protein 28.8 44 0.0015 24.2 3.2 40 153-194 31-74 (95)
98 3oio_A Transcriptional regulat 28.8 56 0.0019 24.2 3.9 31 76-106 7-38 (113)
99 3bdd_A Regulatory protein MARR 28.4 1.2E+02 0.0041 22.5 5.9 70 142-212 36-113 (142)
100 1r1u_A CZRA, repressor protein 28.3 97 0.0033 22.7 5.2 41 140-182 29-73 (106)
101 1owf_B IHF-beta, integration H 28.3 65 0.0022 23.7 4.1 45 138-182 2-46 (94)
102 3boq_A Transcriptional regulat 28.2 84 0.0029 24.2 5.0 56 141-196 51-111 (160)
103 1y6u_A XIS, excisionase from t 28.2 34 0.0012 24.4 2.4 39 90-131 15-56 (70)
104 3cuo_A Uncharacterized HTH-typ 28.1 57 0.0019 23.1 3.7 67 79-148 27-95 (99)
105 2nyx_A Probable transcriptiona 28.0 1.2E+02 0.0042 23.7 6.1 54 142-196 50-108 (168)
106 1s3j_A YUSO protein; structura 27.6 1.2E+02 0.0039 23.1 5.7 52 142-194 42-98 (155)
107 2htj_A P fimbrial regulatory p 27.6 39 0.0013 23.8 2.7 45 79-124 3-47 (81)
108 3v1a_A Computational design, M 27.6 45 0.0016 22.5 2.7 30 69-98 1-30 (48)
109 2oqg_A Possible transcriptiona 27.2 92 0.0031 22.7 4.9 51 141-195 25-79 (114)
110 2pex_A Transcriptional regulat 26.6 1.1E+02 0.0038 23.3 5.5 43 141-184 51-97 (153)
111 1j5y_A Transcriptional regulat 26.2 57 0.0019 26.9 3.8 39 139-177 23-65 (187)
112 2gmg_A Hypothetical protein PF 26.2 69 0.0024 25.0 4.0 28 75-104 10-37 (105)
113 2nnn_A Probable transcriptiona 26.2 92 0.0031 23.1 4.8 45 141-186 42-90 (140)
114 2fe3_A Peroxide operon regulat 26.1 65 0.0022 25.5 4.0 49 74-122 20-73 (145)
115 2qww_A Transcriptional regulat 25.9 1.2E+02 0.0041 23.0 5.5 53 141-194 45-104 (154)
116 4hbl_A Transcriptional regulat 25.5 78 0.0027 24.3 4.4 56 141-197 45-105 (149)
117 1r1t_A Transcriptional repress 25.4 1.4E+02 0.0047 22.8 5.7 52 140-195 49-104 (122)
118 2pg4_A Uncharacterized protein 25.3 82 0.0028 22.5 4.2 51 141-192 19-74 (95)
119 2k9s_A Arabinose operon regula 25.2 65 0.0022 23.6 3.7 30 77-106 4-35 (107)
120 4b8x_A SCO5413, possible MARR- 24.9 1.3E+02 0.0045 23.3 5.6 64 134-197 31-101 (147)
121 2r3s_A Uncharacterized protein 24.7 42 0.0014 29.4 2.9 50 81-132 31-80 (335)
122 1ku9_A Hypothetical protein MJ 24.7 1.9E+02 0.0064 21.5 6.4 47 140-186 29-79 (152)
123 1okr_A MECI, methicillin resis 24.5 1.1E+02 0.0037 22.6 4.9 49 134-183 6-63 (123)
124 3e6m_A MARR family transcripti 24.5 82 0.0028 24.5 4.3 55 141-196 57-116 (161)
125 3mn2_A Probable ARAC family tr 24.3 59 0.002 23.9 3.2 30 77-106 3-33 (108)
126 3jw4_A Transcriptional regulat 23.9 44 0.0015 25.6 2.6 44 141-184 45-93 (148)
127 2g9w_A Conserved hypothetical 23.1 52 0.0018 25.5 2.9 58 75-132 8-71 (138)
128 2f2e_A PA1607; transcription f 23.0 1.7E+02 0.0058 23.0 6.0 49 141-192 28-80 (146)
129 4ets_A Ferric uptake regulatio 22.9 53 0.0018 26.8 2.9 60 72-131 29-100 (162)
130 1q1h_A TFE, transcription fact 22.6 48 0.0017 24.5 2.5 45 80-124 22-66 (110)
131 2fbi_A Probable transcriptiona 22.6 1.3E+02 0.0045 22.2 5.1 45 141-186 40-88 (142)
132 3lyv_A Ribosome-associated fac 22.5 1E+02 0.0035 22.0 4.0 35 164-198 15-52 (66)
133 3mwm_A ZUR, putative metal upt 22.3 2E+02 0.0069 22.4 6.3 51 139-189 16-75 (139)
134 3lap_A Arginine repressor; arg 22.0 1.3E+02 0.0045 25.1 5.3 53 134-197 32-85 (170)
135 3jth_A Transcription activator 21.9 66 0.0022 23.1 3.0 64 80-147 27-92 (98)
136 2a61_A Transcriptional regulat 21.5 1.2E+02 0.0041 22.6 4.7 45 141-186 37-85 (145)
137 3oou_A LIN2118 protein; protei 21.4 73 0.0025 23.4 3.3 30 77-106 6-36 (108)
138 3k2t_A LMO2511 protein; lister 21.4 1.2E+02 0.0042 20.8 4.2 35 164-198 14-51 (57)
139 1jgs_A Multiple antibiotic res 21.2 2.1E+02 0.0071 21.1 6.0 53 142-195 39-96 (138)
140 4ham_A LMO2241 protein; struct 21.2 2.8E+02 0.0096 21.2 7.7 97 66-162 7-119 (134)
141 2cg4_A Regulatory protein ASNC 20.9 1.2E+02 0.0042 23.5 4.7 41 140-181 11-55 (152)
142 1u2w_A CADC repressor, cadmium 20.8 2.1E+02 0.0072 21.5 6.0 52 141-195 46-101 (122)
143 2x4h_A Hypothetical protein SS 20.3 1.5E+02 0.0053 22.2 5.1 45 82-126 22-66 (139)
144 1ucr_A Protein DSVD; dissimila 20.1 1.5E+02 0.0052 21.9 4.6 44 139-182 5-56 (78)
No 1
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=99.54 E-value=8.6e-15 Score=111.62 Aligned_cols=67 Identities=16% Similarity=0.352 Sum_probs=57.3
Q ss_pred CChhHHHHHHHHHHHhc-----cCCCCCHHHHhhhhC-CCCCCcH-H-H-HHhhhCCCceEEeCCeeeeecCCCCC
Q 023374 71 KSPVGAQIKRVIDRLLE-----TRQAFTPEEINRDCY-VDVNANK-A-V-FDSLRNNPKVHYDGKRFSYKSKHDLK 137 (283)
Q Consensus 71 ~~~v~tqi~~vvd~Lk~-----~~~plt~~eI~~~~~-~di~~~~-~-l-~e~L~~npKI~~d~~~f~yKP~y~Ik 137 (283)
...-.+||.+||+|||+ .+.|+|++||+++|+ .|++... . | .|+|++||||+|.+++|+|||+|+||
T Consensus 6 s~~~f~~lakiV~~mK~rh~~g~~~PltL~EILde~~~~d~~~~~k~wL~~eaL~~npkI~~~dgkf~fkP~y~ik 81 (81)
T 1d8j_A 6 SGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNVR 81 (81)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEEECSSSEEECCTTTCC
T ss_pred cccceehHHHHHHHHHHhhccCCCCCccHHHHHHHHhccCCCHHHHHHHHHHHhhcCCceEEeCCceeccCCcCcC
Confidence 33467899999999998 789999999988874 7777663 3 4 49999999999998899999999986
No 2
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=95.02 E-value=0.044 Score=41.51 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=41.7
Q ss_pred HHHHHHHHhhCCCCeehhhHhhhhhcH-----HHHHHHHHHcCcEEEEecC
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDSYPTV-----MEDLQALKAAGQIWLLSNF 184 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~~p~~-----~~~I~~Le~~g~Ilvl~~k 184 (283)
.+.+|++++.+|.||+-+||....|++ ...|+.|-.+|+|-++.+.
T Consensus 16 e~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~ 66 (81)
T 2dk8_A 16 ENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSN 66 (81)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 456999999999999999999999994 7889999999999999764
No 3
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=85.12 E-value=12 Score=32.73 Aligned_cols=110 Identities=10% Similarity=0.082 Sum_probs=70.9
Q ss_pred hhHHHHHHHH-HHHhccCCCCCHHHHhhhh----CCCCCCcHHHHHhhhCCCc----eEE---eCCee-eeecCCCC-CC
Q 023374 73 PVGAQIKRVI-DRLLETRQAFTPEEINRDC----YVDVNANKAVFDSLRNNPK----VHY---DGKRF-SYKSKHDL-KD 138 (283)
Q Consensus 73 ~v~tqi~~vv-d~Lk~~~~plt~~eI~~~~----~~di~~~~~l~e~L~~npK----I~~---d~~~f-~yKP~y~I-k~ 138 (283)
.++-||..++ ..+.+.+.=+++.|+.... |.++-...+++.+...-+. +.. ..|.+ .--+.+.. .+
T Consensus 76 ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~~ 155 (218)
T 3cuq_B 76 QLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEM 155 (218)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGGGG
T ss_pred HHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCchHHH
Confidence 3566665553 3344457779999985544 4554444455544333211 333 44554 33335555 67
Q ss_pred HHHHHHHHhhCCCCeehhhHhh--hhhc--HHHHHHHHHHcCcEEEEec
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKD--SYPT--VMEDLQALKAAGQIWLLSN 183 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD--~~p~--~~~~I~~Le~~g~Ilvl~~ 183 (283)
...+|++++. .+|+++.+|.+ +|+- +.+.|+.++++|-+|+=..
T Consensus 156 ~~~il~~~~~-~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~~ 203 (218)
T 3cuq_B 156 VASALETVSE-KGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDS 203 (218)
T ss_dssp HHHHHHHHHH-TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHH-CCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 7888888874 47999999887 6776 6889999999999998653
No 4
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=84.91 E-value=0.44 Score=40.15 Aligned_cols=70 Identities=11% Similarity=0.010 Sum_probs=51.4
Q ss_pred HHHHHHHHhhCCCCeehh----hHhhhhhcHHHHHHHHHHcCcEEEEecCCCCceeEecCCCCCCCCCCHHHHHHhhh
Q 023374 139 KSQLLVLVRKFPEGIAVI----DLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRD 212 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~----dLkD~~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND~~~~~~VD~efk~lW~~ 212 (283)
+.++|++|+ .|.+++. .|-=||..+.-.|.-|+.+|-|.-+.. |+.+++-.++..+...|++-|+++|+-
T Consensus 13 k~~ILE~Lk--~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~--GK~ayw~L~~s~y~~kV~dilrel~~~ 86 (165)
T 2vxz_A 13 LRDILALLA--DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAF--GNVALVCLSMDQYRQLVDGMIREVERL 86 (165)
T ss_dssp HHHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEE--TTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEE--ccEEEEEecHHHHHHHHHHHHHHHHHH
Confidence 578999999 7777764 455689999999999999999988864 555555455444444677777777764
No 5
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=82.48 E-value=4.2 Score=29.14 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=41.4
Q ss_pred HHHHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCCCCceeEecCCC
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDP 196 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND~ 196 (283)
...+|.+|... +++++.||.+. -+.+-..|+.|+++|-|.......|....+..++.
T Consensus 2 r~~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 2 KNEILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 46788999765 56888888875 45678999999999988766555555544445544
No 6
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=79.59 E-value=4.5 Score=29.71 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=39.1
Q ss_pred HHHHHHHHhhC-----CCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCCCCc
Q 023374 139 KSQLLVLVRKF-----PEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFDSQE 188 (283)
Q Consensus 139 k~~LL~lL~k~-----~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd~~~ 188 (283)
.+++|++|+.+ .+.++|.||.+.. ..|-.+|++|++.|.|.-....-+.+
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~ 64 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVP 64 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSC
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCcH
Confidence 46899999987 4668899998865 45899999999999988775543433
No 7
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=74.07 E-value=1.6 Score=30.88 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC-Cee
Q 023374 79 KRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG-KRF 128 (283)
Q Consensus 79 ~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~-~~f 128 (283)
..|+++|.+.+.|++..||.+.++++-..-...+..|+..--|.... +.|
T Consensus 13 ~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y 63 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYW 63 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceE
Confidence 36899998877899999999999988655556778888877677643 344
No 8
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=69.55 E-value=2.7 Score=30.97 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=37.8
Q ss_pred HHHHHHHHhcc-----CCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC
Q 023374 78 IKRVIDRLLET-----RQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG 125 (283)
Q Consensus 78 i~~vvd~Lk~~-----~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~ 125 (283)
...|++||++. +.|.|+.||.+.+++....-..-+..|...-.|.-++
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecC
Confidence 56788888887 7999999999999885433345678888888888774
No 9
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=69.30 E-value=6 Score=34.97 Aligned_cols=137 Identities=14% Similarity=0.237 Sum_probs=86.6
Q ss_pred HHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceE-Ee--CCeeeeecCCCCCCHHHHHHHHhh----CC--C
Q 023374 81 VIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVH-YD--GKRFSYKSKHDLKDKSQLLVLVRK----FP--E 151 (283)
Q Consensus 81 vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~-~d--~~~f~yKP~y~Ik~k~~LL~lL~k----~~--~ 151 (283)
+-.+|......+..+++...++++...-...++.|....+|. ++ +..|.+-+.+--.=.+.|+..|.. +| .
T Consensus 7 l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~H~~~P~~~ 86 (258)
T 1lva_A 7 LAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHSRYPLRP 86 (258)
T ss_dssp HHHHHHTCTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSS
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeccCCccEEEcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 445566665566669998888877443345567777766654 44 234445454433446677777764 55 8
Q ss_pred CeehhhHhhhh-hc-----HHHHHHHHHHcCcEEEEecCCCCceeEecCCCCCCCCCCHHHHHHhhhcCCCCChhHHHHH
Q 023374 152 GIAVIDLKDSY-PT-----VMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKD 225 (283)
Q Consensus 152 Gi~v~dLkD~~-p~-----~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND~~~~~~VD~efk~lW~~v~vP~d~~Di~k~ 225 (283)
||+..+|+..+ |. +...|++|.++|.|.+-.+ .|.. +...+..+++...+|..| ...
T Consensus 87 G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~~~------~v~l--~~h~~~~~~~~~~~~~~i---------~~~ 149 (258)
T 1lva_A 87 GLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAAN------TVAL--AGFTPSFSETQKKLLKDL---------EDK 149 (258)
T ss_dssp CEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEETT------EEEE--TTCCCCCCHHHHHHHHHH---------HHH
T ss_pred CCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEecCC------EEeC--CCCccCCCHHHHHHHHHH---------HHH
Confidence 99999999876 32 4556688889998554432 2222 444556788888888765 334
Q ss_pred HHHCCCCCc
Q 023374 226 LQKNGMKPA 234 (283)
Q Consensus 226 L~~~Glkp~ 234 (283)
|.++|+.|-
T Consensus 150 ~~~~g~~pp 158 (258)
T 1lva_A 150 YRVSRWQPP 158 (258)
T ss_dssp HHHHTTSCC
T ss_pred HHHCCCCCC
Confidence 556666653
No 10
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=66.23 E-value=8.6 Score=26.92 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEE
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWL 180 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilv 180 (283)
+..+|++|......+++.||.+.. +.|...|+.|+++|-|..
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 568999998765679999988754 558999999999999543
No 11
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=65.77 E-value=8.9 Score=27.24 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=33.7
Q ss_pred HHHHHHHHhhCC-CCeehhhHhhhh---------hcHHHHHHHHHHcCcEEEEecCCC
Q 023374 139 KSQLLVLVRKFP-EGIAVIDLKDSY---------PTVMEDLQALKAAGQIWLLSNFDS 186 (283)
Q Consensus 139 k~~LL~lL~k~~-~Gi~v~dLkD~~---------p~~~~~I~~Le~~g~Ilvl~~kd~ 186 (283)
...+|++|..+. +.+++.||.+.. +.|-.+|+.|++.|-|..+...++
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~ 76 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGG 76 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGG
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCC
Confidence 345677776655 567777765554 457889999999999887765433
No 12
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=65.06 E-value=2.6 Score=31.63 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=40.3
Q ss_pred HHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEe
Q 023374 78 IKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD 124 (283)
Q Consensus 78 i~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d 124 (283)
=-+|++.|++.+.|++.-||.+.+|+|-..=...+..|+.-.+|.--
T Consensus 21 eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 35899999999999999999999999866555788999999998753
No 13
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=63.73 E-value=6.3 Score=32.89 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCc-eEEeCCeeeeecCC
Q 023374 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK-VHYDGKRFSYKSKH 134 (283)
Q Consensus 76 tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npK-I~~d~~~f~yKP~y 134 (283)
.....|+++|.+.+.++|..||.+.++++...=..-+..|+..-- |...++.|.+.+.+
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~~~Gy~l~~~~ 80 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEECCTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEECCEEEECCcc
Confidence 456788999998778999999999888765544444456655333 66666666666544
No 14
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=62.76 E-value=15 Score=27.53 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=44.3
Q ss_pred CCCCC-HHHHHHHHhhCC-CCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCC-CCce--eEecCCCC
Q 023374 134 HDLKD-KSQLLVLVRKFP-EGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFD-SQED--IAYPNDPR 197 (283)
Q Consensus 134 y~Ik~-k~~LL~lL~k~~-~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd-~~~~--ivf~ND~~ 197 (283)
+++.. ---+|.+|.... .||...||.+.. +.+-..|+.||..|-|.-+++.. +..+ ++|.-.|+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~Ly~l~Ps 88 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLSGP 88 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEESSSCCC
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEEEeccCcC
Confidence 34433 345677777643 799999998865 56788899999999999887654 3333 45544554
No 15
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=61.77 E-value=15 Score=26.52 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=35.8
Q ss_pred HHHHHHHhhCC--CCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEe
Q 023374 140 SQLLVLVRKFP--EGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLS 182 (283)
Q Consensus 140 ~~LL~lL~k~~--~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~ 182 (283)
..+|.+|+... +++++.||.+. ...|...|..|+++|.|....
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 67899999876 68999998775 457899999999999987764
No 16
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=61.68 E-value=22 Score=26.21 Aligned_cols=51 Identities=8% Similarity=0.134 Sum_probs=37.3
Q ss_pred CHHHHHHHHhhCCCCeehhhHhhhh----h-cHHHHHHHHHHcCcEEEEecCCCCceeEec
Q 023374 138 DKSQLLVLVRKFPEGIAVIDLKDSY----P-TVMEDLQALKAAGQIWLLSNFDSQEDIAYP 193 (283)
Q Consensus 138 ~k~~LL~lL~k~~~Gi~v~dLkD~~----p-~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ 193 (283)
.++.+|.||+++. +.+..+|.+.. . .|-..|..|+++|.|... ..|.+ +|.
T Consensus 12 ~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~--~~gRP--~w~ 67 (79)
T 1xmk_A 12 IKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ--GTTPP--IWH 67 (79)
T ss_dssp HHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE--CSSSC--EEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec--CCCCC--CeE
Confidence 3678999998874 67777777654 3 778899999999999843 22444 664
No 17
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=61.62 E-value=13 Score=27.44 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCC--CCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEe
Q 023374 139 KSQLLVLVRKFP--EGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLS 182 (283)
Q Consensus 139 k~~LL~lL~k~~--~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~ 182 (283)
...||.+|+... .++++.+|.+.. ..|...|..|+++|.|....
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 356899999765 578888887654 46899999999999987764
No 18
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=61.04 E-value=8.1 Score=30.02 Aligned_cols=102 Identities=13% Similarity=0.227 Sum_probs=66.4
Q ss_pred HHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEE-e--CCeeeeecCCCCCCHHHHHHHHhh----CC--C
Q 023374 81 VIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHY-D--GKRFSYKSKHDLKDKSQLLVLVRK----FP--E 151 (283)
Q Consensus 81 vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~-d--~~~f~yKP~y~Ik~k~~LL~lL~k----~~--~ 151 (283)
+-.+|......+..+++...++++...-...++.|....+|.. + +..|.+-+.|--.=.+.|+..|.. +| .
T Consensus 7 l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~yH~~~P~~~ 86 (135)
T 2v9v_A 7 LAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHSRYPLRP 86 (135)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSS
T ss_pred HHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEEecCCCeEEecHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4455666655666699988888774433456677777777554 4 234323333333335667777754 45 8
Q ss_pred CeehhhHhhhhhc------HHHHHHHHHHcCcEEEEe
Q 023374 152 GIAVIDLKDSYPT------VMEDLQALKAAGQIWLLS 182 (283)
Q Consensus 152 Gi~v~dLkD~~p~------~~~~I~~Le~~g~Ilvl~ 182 (283)
||.-.+|+-.+.. +...|+.|.++|.|.+-.
T Consensus 87 G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~~ 123 (135)
T 2v9v_A 87 GLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAA 123 (135)
T ss_dssp CEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEecC
Confidence 9999999988732 466678999999887643
No 19
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=60.04 E-value=1.9 Score=33.77 Aligned_cols=94 Identities=10% Similarity=0.126 Sum_probs=62.1
Q ss_pred HHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCCeeeeecCCCCCCHHHHHHHHhhC---CCCee
Q 023374 78 IKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKF---PEGIA 154 (283)
Q Consensus 78 i~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~~f~yKP~y~Ik~k~~LL~lL~k~---~~Gi~ 154 (283)
...|+..+.+ .|.++.|+.+.++++-..-..++..|...-.|.-.+..+.|.+.. -+++.+.|..+ .+.++
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~----~~~~~~~l~~~~~~~~~it 82 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDR----IVEFANMIRDLDQECGSTC 82 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHH----HHHHHHHHHHHHHHHSSEE
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHHH----HHHHHHHHHHHHHHCCCcc
Confidence 3455566644 788999999888888766667888888887776644444444433 24455555443 38899
Q ss_pred hhhHhhhhhcH----HHHHHHHHHcCc
Q 023374 155 VIDLKDSYPTV----MEDLQALKAAGQ 177 (283)
Q Consensus 155 v~dLkD~~p~~----~~~I~~Le~~g~ 177 (283)
+.+++|.+--. ..-++-|-+.|-
T Consensus 83 ~ae~Rd~lg~sRK~ai~lLE~~Dr~g~ 109 (121)
T 2pjp_A 83 AADFRDRLGVGRKLAIQILEYFDRIGF 109 (121)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCcHHHHHHHHHHHhhcCC
Confidence 99999999543 345555555553
No 20
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=59.43 E-value=1.9 Score=38.68 Aligned_cols=44 Identities=27% Similarity=0.529 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCC--CCeehhhHhhhhh-----cHHHHHHHHHHcCcEEEEe
Q 023374 139 KSQLLVLVRKFP--EGIAVIDLKDSYP-----TVMEDLQALKAAGQIWLLS 182 (283)
Q Consensus 139 k~~LL~lL~k~~--~Gi~v~dLkD~~p-----~~~~~I~~Le~~g~Ilvl~ 182 (283)
...+|++|+..+ +||.+++|....+ .+.++|++|..+|.||-..
T Consensus 209 ~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTi 259 (270)
T 2pi2_A 209 QNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTV 259 (270)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccc
Confidence 467999999875 8999999998774 4688999999999997553
No 21
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=57.41 E-value=48 Score=27.66 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=60.6
Q ss_pred CC-CCCHHHHhhhh------CCCCCCcHHHH------HhhhCCC--c-eEEeCCeeeeecCCCCCCHHHHHHHHhhCCCC
Q 023374 89 RQ-AFTPEEINRDC------YVDVNANKAVF------DSLRNNP--K-VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEG 152 (283)
Q Consensus 89 ~~-plt~~eI~~~~------~~di~~~~~l~------e~L~~np--K-I~~d~~~f~yKP~y~Ik~k~~LL~lL~k~~~G 152 (283)
+. -+++.|+.... +.++-+..+++ +.|. +| + +.|.++.+.-...+.=...+.+|++++..++.
T Consensus 36 GG~~I~L~dl~~~~nra~R~g~~lISp~Dl~~A~~~l~~Lg-~~~~~l~~~~sg~~V~~~~~~d~~~~~il~~~~~~~g~ 114 (169)
T 1u5t_B 36 NYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLG-LNELKLVKVNKRILCVTSEKFDVVKEKLVDLIGDNPGS 114 (169)
T ss_dssp CCCCEETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGGT-CCSCEEEEETTTEEEEESSCSHHHHHHHHHHHHHSCSB
T ss_pred CceeEEHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHhcC-CCeEEEEEECCeeEEEeCCChhHHHHHHHHHHHhcCCC
Confidence 45 67777774432 33333334444 3333 35 3 33456665554334211336788999877666
Q ss_pred ----eehh-h-Hhh--hhhc--HHHHHHHHHHcCcEEEEecCCCCceeEecC
Q 023374 153 ----IAVI-D-LKD--SYPT--VMEDLQALKAAGQIWLLSNFDSQEDIAYPN 194 (283)
Q Consensus 153 ----i~v~-d-LkD--~~p~--~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~N 194 (283)
++.. + |.+ +|+- +.+.|+.++++|.+|+=...+| ...|+|
T Consensus 115 d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~~G--~~y~~N 164 (169)
T 1u5t_B 115 DLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSG--IYYYKN 164 (169)
T ss_dssp CHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEEECSSC--EEEEEC
T ss_pred CcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCc--ceEEee
Confidence 6666 6 543 6665 6888999999999988755444 234555
No 22
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=56.09 E-value=30 Score=24.34 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHHHHHhhCCCCeehhhHhhhh--------hcHHHHHHHHHHcCcEEEEecCCCCceeEecC
Q 023374 140 SQLLVLVRKFPEGIAVIDLKDSY--------PTVMEDLQALKAAGQIWLLSNFDSQEDIAYPN 194 (283)
Q Consensus 140 ~~LL~lL~k~~~Gi~v~dLkD~~--------p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~N 194 (283)
..+|.+|.. .+++++.||.+.. +.+-..|+.|++.|-|-..+ +|...++++.
T Consensus 12 ~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~--~gr~~~y~~~ 71 (82)
T 1p6r_A 12 LEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK--EGRVFVYTPN 71 (82)
T ss_dssp HHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE--ETTEEEEEES
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe--cCCEEEEEee
Confidence 357888876 5789999998865 57899999999999887664 3554343333
No 23
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=55.83 E-value=13 Score=32.24 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEe-CCeeeeec
Q 023374 74 VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD-GKRFSYKS 132 (283)
Q Consensus 74 v~tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d-~~~f~yKP 132 (283)
.......|+++|...+.++|+.||.+.++++-+.-..++..|...-=|..+ +++|.--|
T Consensus 6 sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~ 65 (249)
T 1mkm_A 6 TLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGY 65 (249)
T ss_dssp THHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECCCCcEEECH
Confidence 344566788999877779999999998988777667888999988888887 44555443
No 24
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=54.90 E-value=43 Score=33.42 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=59.3
Q ss_pred CCCCHHHHhhhh------CCCCCCcHHHH------HhhhCCCc-eE-EeCCeeeeecC-CCCCCHHHHHHHHhhCCCCee
Q 023374 90 QAFTPEEINRDC------YVDVNANKAVF------DSLRNNPK-VH-YDGKRFSYKSK-HDLKDKSQLLVLVRKFPEGIA 154 (283)
Q Consensus 90 ~plt~~eI~~~~------~~di~~~~~l~------e~L~~npK-I~-~d~~~f~yKP~-y~Ik~k~~LL~lL~k~~~Gi~ 154 (283)
.-+++.|+.... +.++-...+++ +.|...-+ |. |+++.+.- +. +.=.+...+|++++. .+|+.
T Consensus 433 GmItL~DL~~~~NRa~R~g~elISp~Dll~A~~~le~Lg~~~~~L~~~~sgvlVv-s~~~~~~~~~~il~l~~~-~g~vT 510 (566)
T 1w7p_D 433 MIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKVNKRILCV-TSEKFDVVKEKLVDLIGD-NPGSD 510 (566)
T ss_dssp CEEEHHHHHHHHHHHTTTTTCCCCHHHHHHHHTTGGGGTCTTCEEEECSSSCEEE-ESSCHHHHHHHHHHHHTT-STTCC
T ss_pred CeEEHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCCeEEEEEECCEEEEE-cCCCchHHHHHHHHHHHh-cCCcC
Confidence 457888884433 34444434443 44544444 43 35565554 32 212556777777764 58999
Q ss_pred hhhHhhhhh-----------cHHHHHHHHHHcCcEEEEecCC
Q 023374 155 VIDLKDSYP-----------TVMEDLQALKAAGQIWLLSNFD 185 (283)
Q Consensus 155 v~dLkD~~p-----------~~~~~I~~Le~~g~Ilvl~~kd 185 (283)
+.+|.+.+- -+.+.|+.++++|.+|+=...+
T Consensus 511 ~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~rDd~~~ 552 (566)
T 1w7p_D 511 LLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLS 552 (566)
T ss_dssp HHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEEECCCC
Confidence 999986554 5789999999999999875433
No 25
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=54.87 E-value=40 Score=23.75 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHhhCCCCeehhhHhhhhh----cHHHHHHHHHHcCcEEE
Q 023374 134 HDLKDKSQLLVLVRKFPEGIAVIDLKDSYP----TVMEDLQALKAAGQIWL 180 (283)
Q Consensus 134 y~Ik~k~~LL~lL~k~~~Gi~v~dLkD~~p----~~~~~I~~Le~~g~Ilv 180 (283)
|..-+.++||++|+...|=+.|++...-|- .|.+.|+.|++.|-|-+
T Consensus 7 ~~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 7 HHMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp SCCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred hhhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 456678999999998766555777665553 46788999999998865
No 26
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.40 E-value=7.8 Score=27.58 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHhccC-CCCCHHHHhhhh-----CCCCCCcHHHHHhhhCCCceEE
Q 023374 74 VGAQIKRVIDRLLETR-QAFTPEEINRDC-----YVDVNANKAVFDSLRNNPKVHY 123 (283)
Q Consensus 74 v~tqi~~vvd~Lk~~~-~plt~~eI~~~~-----~~di~~~~~l~e~L~~npKI~~ 123 (283)
+..|-..|+++|.+.. .++|.+||.+.+ +++...=...++.|...--|.-
T Consensus 15 ~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 15 VTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp CCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred cCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 3455678999999887 899999998887 4444433467777777666654
No 27
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=53.68 E-value=30 Score=25.82 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHHHHHhhCCCCeehhhHhhhhhc-----HHHHHHHHHHcCcEEEEecCCCCceeEec
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSYPT-----VMEDLQALKAAGQIWLLSNFDSQEDIAYP 193 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~p~-----~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ 193 (283)
.+|.+|. .+++++.||.+..++ +-..|+.|++.|-|--.....+..++.|.
T Consensus 18 ~IL~~L~--~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~ 73 (107)
T 2hzt_A 18 VILXHLT--HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYE 73 (107)
T ss_dssp HHHHHHT--TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE
T ss_pred HHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEE
Confidence 4666675 478999999988755 57789999999998876655444444443
No 28
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=51.63 E-value=15 Score=32.11 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCCeeeeecC
Q 023374 75 GAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSK 133 (283)
Q Consensus 75 ~tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~~f~yKP~ 133 (283)
......|+++|...+.++++.||.+.++++-+.-..++..|...--|..++++|.--|.
T Consensus 13 ~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~~~Y~Lg~~ 71 (257)
T 2g7u_A 13 IERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPR 71 (257)
T ss_dssp HHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECGG
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEEEcHH
Confidence 34455677777777789999999999998877767888999998889888777766554
No 29
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=51.58 E-value=38 Score=25.17 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHHHHhhCCCCeehhhHhhhhh-----cHHHHHHHHHHcCcEEEEecCCCCceeEe
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSYP-----TVMEDLQALKAAGQIWLLSNFDSQEDIAY 192 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~p-----~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf 192 (283)
.+|.+|. .+++.+.||.+..+ .+-..|+.|++.|-|--.....+..++.|
T Consensus 29 ~IL~~L~--~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y 83 (107)
T 2fsw_A 29 LIIFQIN--RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEY 83 (107)
T ss_dssp HHHHHHT--TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHH--hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEE
Confidence 4566664 47799999998875 36788999999999887665544444443
No 30
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=50.71 E-value=17 Score=32.22 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCC
Q 023374 75 GAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGK 126 (283)
Q Consensus 75 ~tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~ 126 (283)
......|+++|...+.++|+.||.+.++++-+.-..++..|...-=|..+++
T Consensus 29 l~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~ 80 (275)
T 3mq0_A 29 LRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSAD 80 (275)
T ss_dssp HHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTT
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCC
Confidence 4456678888888888999999999999999998899999999999999864
No 31
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=50.70 E-value=44 Score=27.58 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=58.8
Q ss_pred CHHHHHHHHhhCCCC-eehhhHhhhhh-----cHHHHHHHHHHcCcEEEEecC-----CCCceeEecCCCC-------C-
Q 023374 138 DKSQLLVLVRKFPEG-IAVIDLKDSYP-----TVMEDLQALKAAGQIWLLSNF-----DSQEDIAYPNDPR-------V- 198 (283)
Q Consensus 138 ~k~~LL~lL~k~~~G-i~v~dLkD~~p-----~~~~~I~~Le~~g~Ilvl~~k-----d~~~~ivf~ND~~-------~- 198 (283)
....+|.+|-.++.| ..+.||.+..| .|-..|+.|++.|-|-.+... .|.+...|.--+. +
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~y~ 109 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRAVS 109 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHHhH
Confidence 567889999888866 78999998665 468889999999999887532 2556566653221 1
Q ss_pred CCCCCHHHHHHhhhcCCCCChhHHHHHH
Q 023374 199 PIKADDDLKLLFRDIALPSDMLDIEKDL 226 (283)
Q Consensus 199 ~~~VD~efk~lW~~v~vP~d~~Di~k~L 226 (283)
.+...+.++.|+..|.-+ +.|+++-
T Consensus 110 ~la~~~alr~l~~~v~~t---~~~~~~~ 134 (151)
T 3u1d_A 110 MYEEAAVWRSVYEQMERT---DRIEAIE 134 (151)
T ss_dssp CSTHHHHTHHHHHHSCCC---HHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcc---HHHHHHh
Confidence 123346677777777644 3666654
No 32
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=50.22 E-value=33 Score=27.34 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=34.8
Q ss_pred CCCeehhhHhhhhhcH-----HHHHHHHHHcCcEEEEecCCCCceeEecCC
Q 023374 150 PEGIAVIDLKDSYPTV-----MEDLQALKAAGQIWLLSNFDSQEDIAYPND 195 (283)
Q Consensus 150 ~~Gi~v~dLkD~~p~~-----~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND 195 (283)
.+++.+.||.+..|++ -..|++|++.|-|--....++..++.|.--
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT 87 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLT 87 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEEC
Confidence 4778999999999774 778999999998876665555555555443
No 33
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=50.15 E-value=26 Score=25.56 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEE
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLL 181 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl 181 (283)
-.++|++|+.+ +.++|.||.+-+ ..+..||+.|++.|.|.-+
T Consensus 4 L~~Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 4 LIQVRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 46788888764 668888888765 4578999999999987666
No 34
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=49.29 E-value=13 Score=26.40 Aligned_cols=59 Identities=10% Similarity=0.214 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHhhhhCCC--CCCc--HHHHHhhhCCCceEE--eCCeeeeecCC
Q 023374 75 GAQIKRVIDRLLETRQAFTPEEINRDCYVD--VNAN--KAVFDSLRNNPKVHY--DGKRFSYKSKH 134 (283)
Q Consensus 75 ~tqi~~vvd~Lk~~~~plt~~eI~~~~~~d--i~~~--~~l~e~L~~npKI~~--d~~~f~yKP~y 134 (283)
..+-..|+++|.. ..++|..||.+.++.+ ++.. ..+++.|...--|.. +++.|.|.|..
T Consensus 8 t~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~~~ 72 (82)
T 1p6r_A 8 SDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNI 72 (82)
T ss_dssp CHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESC
T ss_pred CHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEeec
Confidence 3345678888877 6699999999888753 3333 368899988888876 46689998853
No 35
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=48.60 E-value=48 Score=24.95 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=40.7
Q ss_pred HHHHHHHhhCC-CCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCC-CCceeEecCC
Q 023374 140 SQLLVLVRKFP-EGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFD-SQEDIAYPND 195 (283)
Q Consensus 140 ~~LL~lL~k~~-~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd-~~~~ivf~ND 195 (283)
-.+|.+|..++ +|+++.||.+.. +.+-..|+.|++.|-|....++. .....|+.-+
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~ 95 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTT 95 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECH
Confidence 35677787776 799999988754 56889999999999998876653 4444454443
No 36
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=48.19 E-value=14 Score=31.65 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcH
Q 023374 75 GAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANK 109 (283)
Q Consensus 75 ~tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~ 109 (283)
.-|+..+++||+.+..++...+.+++||+.|.-.+
T Consensus 85 ~~Qv~AAl~yl~~~~~~id~~~Fe~~cGVGV~VT~ 119 (187)
T 3tl4_X 85 SLQVDAAFKYVKANGEASTKMGMNENSGVGIEITE 119 (187)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHTTTTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHCCCCeEeCH
Confidence 45899999999988889999999999998877654
No 37
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=47.57 E-value=23 Score=23.47 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=29.6
Q ss_pred HHHHHHhccCCCCCHHHHhhhh-----CCCCCCcHHHHHhhhCCCceEEeCCeeeee
Q 023374 80 RVIDRLLETRQAFTPEEINRDC-----YVDVNANKAVFDSLRNNPKVHYDGKRFSYK 131 (283)
Q Consensus 80 ~vvd~Lk~~~~plt~~eI~~~~-----~~di~~~~~l~e~L~~npKI~~d~~~f~yK 131 (283)
.+..+|. .+.++|.+||.+.+ +++...=..-++.|.-- ++..+++.+.|.
T Consensus 9 ~i~~ll~-~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~v-~~~~~~~~~~Y~ 63 (64)
T 2p5k_A 9 KIREIIT-SNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLV-KVPTNNGSYKYS 63 (64)
T ss_dssp HHHHHHH-HSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTCE-EEEETTTEEEEE
T ss_pred HHHHHHH-cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCE-EEecCCCceeee
Confidence 3445554 46799999998877 44433222333444444 666666766663
No 38
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=47.03 E-value=1.5e+02 Score=26.09 Aligned_cols=162 Identities=16% Similarity=0.198 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCC-----------CCCCc-cCCCCCCCCCccccccchhhhccccc
Q 023374 3 LQEKLDRFKKQQEKCQETLSNIAAKSGA-SRATTTSR-----------PTPAA-ASTAARSSPPVKFSNDTERLQHINSI 69 (283)
Q Consensus 3 ~~~~~~~f~~qq~~~~~tl~s~a~~~~~-~~~~~~~~-----------~~~~~-~~~~~~~~~~v~~s~~~~~~q~~nt~ 69 (283)
.+++++.++.|-+-|++.|..-|.+-.+ -+..|.-+ .-|.+ |..+ + +-. |
T Consensus 25 ~~~~~~~l~~Ql~~F~~~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVDPLa~s~kg---------~------~~l--g 87 (233)
T 1u5t_A 25 LEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLFDRD---------K------HLF--T 87 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHHHHTTSS---------G------GGT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCCCCccCCcc---------c------ccc--C
Confidence 3567889999999999999999988632 22222111 12333 3321 1 000 1
Q ss_pred CCChhHHHH-HHHHHHHhcc----CCCCCHHHHhhhhCC--CCCCcH-----HHHHhhhCCCceEEeCCeeeeec-CCC-
Q 023374 70 RKSPVGAQI-KRVIDRLLET----RQAFTPEEINRDCYV--DVNANK-----AVFDSLRNNPKVHYDGKRFSYKS-KHD- 135 (283)
Q Consensus 70 ~~~~v~tqi-~~vvd~Lk~~----~~plt~~eI~~~~~~--di~~~~-----~l~e~L~~npKI~~d~~~f~yKP-~y~- 135 (283)
. .....++ ..|||.+..+ +.-++++|+...+.- .|+.+. ..+..| +.=+|.--++++.-+. ++.
T Consensus 88 ~-gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~~L-~gf~v~~v~g~~~vqsvp~el 165 (233)
T 1u5t_A 88 V-NDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKSL-ECFEIFQIRGKKFLRSVPNEL 165 (233)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTTT-CCCCEEEETTEEEECCSSSCC
T ss_pred c-chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhhc-cCeEEEEECCEEEEEeCCCcc
Confidence 1 1121111 3456666544 467888888765542 555443 233444 2112222245443333 333
Q ss_pred CCCHHHHHHHHhhCCCCeehhhHhh--hhhc--HHHHHHHHHHcCcEEEEecC
Q 023374 136 LKDKSQLLVLVRKFPEGIAVIDLKD--SYPT--VMEDLQALKAAGQIWLLSNF 184 (283)
Q Consensus 136 Ik~k~~LL~lL~k~~~Gi~v~dLkD--~~p~--~~~~I~~Le~~g~Ilvl~~k 184 (283)
=.|-..+|+++. ..+++++++|.+ +|+. |...|+.|+++|-+||=...
T Consensus 166 ~~D~~~vLe~a~-~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD~q~ 217 (233)
T 1u5t_A 166 TSDQTKILEICS-ILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQG 217 (233)
T ss_dssp CTTHHHHHHTTT-TTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECSS
T ss_pred chHHHHHHHHHH-hcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 456667777775 358899999998 6766 68899999999999987433
No 39
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=46.78 E-value=34 Score=25.60 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEe
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLS 182 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~ 182 (283)
-.++|++|+.+ +.++|.||.+-+ ..+..||+.|++.|.|.-++
T Consensus 4 L~~Il~~L~~~-g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 4 LMEVRDMLALQ-GRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp THHHHHHHHHS-CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 35788888764 678899888765 45789999999999887664
No 40
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=46.67 E-value=55 Score=24.53 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=40.9
Q ss_pred HHHHHHhhCCC-CeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCC-CCceeEecCCCC
Q 023374 141 QLLVLVRKFPE-GIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFD-SQEDIAYPNDPR 197 (283)
Q Consensus 141 ~LL~lL~k~~~-Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd-~~~~ivf~ND~~ 197 (283)
.+|.+|..+++ |+++.+|.+.. +.+-..|+.|++.|-|....+.+ .....++..+..
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G 100 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKA 100 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHH
Confidence 46777777764 89999888764 56788999999999988776653 444455555443
No 41
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=46.23 E-value=15 Score=28.10 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCCCCceeEecCCCCCC--CCCCHHHHHHhhh
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVP--IKADDDLKLLFRD 212 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND~~~~--~~VD~efk~lW~~ 212 (283)
.-.+|.+|. .+++++.||.+. .+.+-..|+.|++.|-|...+. |...++..++..+. ..+-+++..+|..
T Consensus 20 R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~--gr~~~y~l~~~~~~~l~~~~~~~~~~~~~ 95 (118)
T 3f6o_A 20 RRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ--GRVRTCAIEKEPFTAVEAWLAEQQELWES 95 (118)
T ss_dssp HHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEECSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec--CCEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 456778887 477899998775 4567889999999998876654 55444444544332 1233555667776
Q ss_pred cCCCCChhHHHHHHHHCC
Q 023374 213 IALPSDMLDIEKDLQKNG 230 (283)
Q Consensus 213 v~vP~d~~Di~k~L~~~G 230 (283)
. ...+++.|...|
T Consensus 96 ~-----l~~l~~~l~~~~ 108 (118)
T 3f6o_A 96 R-----TDRLEQFVTEHT 108 (118)
T ss_dssp C-----C-----------
T ss_pred H-----HHHHHHHHhccC
Confidence 5 234666666555
No 42
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=46.18 E-value=19 Score=31.11 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC--Ceeee
Q 023374 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG--KRFSY 130 (283)
Q Consensus 76 tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~--~~f~y 130 (283)
.....|+++|...+.++++.||.+.++++-+.-..++..|...-=|..++ ++|.-
T Consensus 6 ~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~l 62 (241)
T 2xrn_A 6 ARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRL 62 (241)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEE
Confidence 34567888888877899999999999988777678999999999999875 34443
No 43
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=46.11 E-value=11 Score=33.03 Aligned_cols=57 Identities=5% Similarity=0.056 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCCeeeeec
Q 023374 75 GAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKS 132 (283)
Q Consensus 75 ~tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~~f~yKP 132 (283)
......|+++|...+.++++.||.+.++++-+.-..++..|...-=|..+++. .|..
T Consensus 22 l~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~-~Y~l 78 (260)
T 2o0y_A 22 VTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADG-SYSL 78 (260)
T ss_dssp HHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTS-CEEE
T ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCC-eEEe
Confidence 33455667777666789999999999998877777888999998889988654 4444
No 44
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=45.82 E-value=12 Score=27.92 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCCCCCHHHHhhhh-CCCCCCcHHHHHhhhCCCceEE--eCCeeeeecC
Q 023374 78 IKRVIDRLLETRQAFTPEEINRDC-YVDVNANKAVFDSLRNNPKVHY--DGKRFSYKSK 133 (283)
Q Consensus 78 i~~vvd~Lk~~~~plt~~eI~~~~-~~di~~~~~l~e~L~~npKI~~--d~~~f~yKP~ 133 (283)
-..|+++++++.+.+|-++|...+ ++++..--..+-.|-.--+|+. .++++.||.+
T Consensus 16 e~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~~~liYr~k 74 (81)
T 2dk8_A 16 ENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIK 74 (81)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECSSSEEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecCCeEEEEec
Confidence 345999999999999999997766 3455444456666666677776 4567777764
No 45
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=45.71 E-value=12 Score=29.07 Aligned_cols=67 Identities=16% Similarity=0.297 Sum_probs=49.5
Q ss_pred HHHHHHHHhccCCC-CCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEe-----CC--eeeeecCCCCCCHHHHHHHHhh
Q 023374 78 IKRVIDRLLETRQA-FTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD-----GK--RFSYKSKHDLKDKSQLLVLVRK 148 (283)
Q Consensus 78 i~~vvd~Lk~~~~p-lt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d-----~~--~f~yKP~y~Ik~k~~LL~lL~k 148 (283)
-..|+.+|.+...| +|..||.+.++++-+.-...++.|...--|... ++ .|.|.+. ..+++...+++
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~----~~~~~~~~i~~ 102 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIY----SKNQIRNIIQK 102 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEEC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecC----CHHHHHHHHHH
Confidence 45788899888888 999999999998776666778888887777642 23 5666664 36777766654
No 46
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=45.47 E-value=9.9 Score=33.45 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCCeeeeecC
Q 023374 75 GAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSK 133 (283)
Q Consensus 75 ~tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~~f~yKP~ 133 (283)
......|+++|.....++++.||.+.++++-+.-..++..|...-=|..++++|.--|.
T Consensus 20 l~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~~~Y~Lg~~ 78 (265)
T 2ia2_A 20 LARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPR 78 (265)
T ss_dssp HHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESSSEEEECGG
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCEEEEcHH
Confidence 34456677777766789999999999999877777888888888888888777766554
No 47
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=44.30 E-value=48 Score=24.89 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=36.8
Q ss_pred HHHHHHhhCCCCeehhhHhhhhhc-----HHHHHHHHHHcCcEEEEecCCCCceeEe
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSYPT-----VMEDLQALKAAGQIWLLSNFDSQEDIAY 192 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~p~-----~~~~I~~Le~~g~Ilvl~~kd~~~~ivf 192 (283)
.+|.+|.. +++++.||.+..|+ +-..|+.|++.|-|--.....+..++.|
T Consensus 26 ~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~ 80 (112)
T 1z7u_A 26 SLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEY 80 (112)
T ss_dssp HHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEE
T ss_pred HHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 46777763 78999999998844 5778999999999887766544443433
No 48
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=43.91 E-value=58 Score=23.42 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCCCCceeEecCC
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPND 195 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND 195 (283)
.-.+|.+|.. +++++.||.+. -+.+-..|+.|++.|-|... .+|....+..++
T Consensus 25 r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~--~~g~~~~y~l~~ 81 (98)
T 3jth_A 25 RLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTR--KEAQTVYYTLKS 81 (98)
T ss_dssp HHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--CCTTCCEEEECC
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE--EeCCEEEEEECH
Confidence 3467777765 78999998875 45678899999999977654 445543433343
No 49
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=43.27 E-value=81 Score=22.24 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=37.5
Q ss_pred HHHHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCCCCceeEecCC
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFDSQEDIAYPND 195 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND 195 (283)
.-.+|.+|.. .+++++.||.+.. +.+-..|+.|++.|-|.... ++....+..++
T Consensus 26 ~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~--~~r~~~y~l~~ 83 (99)
T 3cuo_A 26 RLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQR--DAQRILYSIKN 83 (99)
T ss_dssp HHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE--CSSCEEEEECC
T ss_pred HHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe--cCCEEEEEECh
Confidence 3557777743 4579999988754 56789999999999887665 35543444444
No 50
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=43.08 E-value=11 Score=28.30 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC
Q 023374 72 SPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG 125 (283)
Q Consensus 72 ~~v~tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~ 125 (283)
..+......|+++|++.+ +|+.||.+.++++-..-...+..|...--|...+
T Consensus 13 ~~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~ 64 (82)
T 1oyi_A 13 RSNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSD 64 (82)
T ss_dssp CCSHHHHHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECS
T ss_pred cchHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC
Confidence 345667789999999644 9999999988877765556667776666666644
No 51
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=41.42 E-value=39 Score=25.66 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCCCC--CCCCCHHHHHHhhhc
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPRV--PIKADDDLKLLFRDI 213 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~~~--~~~VD~efk~lW~~v 213 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|....+. |+....|+..+.+. .-.+.+.+..+...+
T Consensus 44 ~iL~~l~~~-~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~ 122 (147)
T 1z91_A 44 LALLLLWEH-ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPGTILGLS 122 (147)
T ss_dssp HHHHHHHHH-SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTTTHHHHHHHHT
T ss_pred HHHHHHHHC-CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHHHHHHHHHHHHc
Confidence 456666554 478888887754 5678899999999988766554 44444555443322 123444444444444
No 52
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=41.07 E-value=45 Score=24.94 Aligned_cols=55 Identities=18% Similarity=0.133 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCC-CCceeEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFD-SQEDIAYPNDP 196 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd-~~~~ivf~ND~ 196 (283)
.+|.+|..+ +|+++.||.+. .+.+-..|+.|++.|-|....+.. +....++..+.
T Consensus 33 ~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~ 92 (138)
T 3bpv_A 33 ACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRR 92 (138)
T ss_dssp HHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHh
Confidence 456666664 67888888774 467889999999999998876653 33434444443
No 53
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=40.48 E-value=45 Score=25.17 Aligned_cols=56 Identities=9% Similarity=0.036 Sum_probs=40.6
Q ss_pred CCCCCHH-HHHHHHhhCCCCeehhhHhhhh--------hcHHHHHHHHHHcCcEEEEecCCCCceeEe
Q 023374 134 HDLKDKS-QLLVLVRKFPEGIAVIDLKDSY--------PTVMEDLQALKAAGQIWLLSNFDSQEDIAY 192 (283)
Q Consensus 134 y~Ik~k~-~LL~lL~k~~~Gi~v~dLkD~~--------p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf 192 (283)
+++...+ .+|.+|-+ .+|+++.||.+.. +.+-..|+.|++.|-|-..+ +|...+++
T Consensus 31 ~~LT~~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~--~gR~~~Y~ 95 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK--EGRKFVYR 95 (99)
T ss_dssp CCCCCSCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE--ETTEEEEE
T ss_pred CCCCHHHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe--CCCEEEEE
Confidence 4555444 68888876 5689999998875 56899999999999776553 45544444
No 54
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=40.44 E-value=30 Score=25.33 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=37.1
Q ss_pred HHHHHHHhccC--CCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC
Q 023374 79 KRVIDRLLETR--QAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG 125 (283)
Q Consensus 79 ~~vvd~Lk~~~--~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~ 125 (283)
..|+++|++.. .++|..||.+.++++-..=...+..|..--.|...+
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 46889999765 689999999999977654456778888888888764
No 55
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=40.22 E-value=19 Score=35.80 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhC-----CCceEEeCCeeeeecC-CC------------C-
Q 023374 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRN-----NPKVHYDGKRFSYKSK-HD------------L- 136 (283)
Q Consensus 76 tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~-----npKI~~d~~~f~yKP~-y~------------I- 136 (283)
...+.|+.+|++.. .+|..+|.+.++++...-...+..|.. ..=|+-.+++|.-.+. |. +
T Consensus 430 ~~~~~iL~~l~~~~-~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~~~~~~~~~~~~~~~~~~ 508 (583)
T 3lmm_A 430 YRIAIVLYLLFQRP-FITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNACREILRKVEPSPFSPVR 508 (583)
T ss_dssp HHHHHHHHHHHHSS-SBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHHHHHHHTSCC--------
T ss_pred hhHHHHHHHHHHCC-CcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeCCEEEECHHHHHHhcccccccccccc
Confidence 35568899998755 699999999999776665678888887 5567767777776553 10 1
Q ss_pred -------CCHHHHHHHHhhCCCCeehhhHhh----hhhcHHHHHHHHHHcCcE
Q 023374 137 -------KDKSQLLVLVRKFPEGIAVIDLKD----SYPTVMEDLQALKAAGQI 178 (283)
Q Consensus 137 -------k~k~~LL~lL~k~~~Gi~v~dLkD----~~p~~~~~I~~Le~~g~I 178 (283)
.-++-++++|+.+ +.|+..|+.+ +.+.+-..|++|.++|.|
T Consensus 509 ~~~~~~~~~~~~I~~~l~~~-g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l 560 (583)
T 3lmm_A 509 YLSTDQAELTNAAMLWLSEV-GDLATSDLMAMCGVSRGTAKACVDGLVDEERV 560 (583)
T ss_dssp -----------------------------------------------------
T ss_pred cccCChhHHHHHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 1122356666655 4577777666 345678889999999985
No 56
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=39.62 E-value=22 Score=26.92 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=40.9
Q ss_pred HHHHHHHHhccCCCCCHHHHhhhhCCC--CCCc--HHHHHhhhCCCceEE--eCCeeeeecC
Q 023374 78 IKRVIDRLLETRQAFTPEEINRDCYVD--VNAN--KAVFDSLRNNPKVHY--DGKRFSYKSK 133 (283)
Q Consensus 78 i~~vvd~Lk~~~~plt~~eI~~~~~~d--i~~~--~~l~e~L~~npKI~~--d~~~f~yKP~ 133 (283)
-..|+.+|-+ ..++|..||.+.++.+ ++.. ..+++.|...--|.- +++.|.|.|.
T Consensus 37 e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y~p~ 97 (99)
T 2k4b_A 37 ELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRKFVYRPL 97 (99)
T ss_dssp CSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTEEEEECC
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEEEEe
Confidence 3467788876 4589999999988764 3333 368888888777776 4669999985
No 57
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=39.38 E-value=11 Score=33.21 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCCeeeeec
Q 023374 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKS 132 (283)
Q Consensus 76 tqi~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~~f~yKP 132 (283)
.....|+++|...+.++|+.||-+.++++-+.-..++..|...-=|..++++=.|..
T Consensus 6 ~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~l 62 (260)
T 3r4k_A 6 SKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRL 62 (260)
T ss_dssp HHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEE
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEc
Confidence 344567777777778999999999999998887889999999999999874333444
No 58
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=39.27 E-value=73 Score=23.98 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDP 196 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~ 196 (283)
.+|.+|. .+|+++.||.+.. +.+-..|+.|++.|-|....+. |+....++..+.
T Consensus 41 ~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~ 99 (146)
T 2gxg_A 41 LVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEK 99 (146)
T ss_dssp HHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHH
T ss_pred HHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHH
Confidence 4566666 6778888887754 5678899999999998877665 444445554443
No 59
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=39.17 E-value=60 Score=24.20 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=34.6
Q ss_pred HHHHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCCCCc
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFDSQE 188 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd~~~ 188 (283)
.-.+|.+|.. +++++.||.+. -+.+-..|+.|++.|-|...+ +|..
T Consensus 27 r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~--~gr~ 76 (108)
T 2kko_A 27 RLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVEARR--EGTR 76 (108)
T ss_dssp THHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE--ETTE
T ss_pred HHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE--eCCE
Confidence 3568888863 78899998875 455788999999999887665 3543
No 60
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=38.84 E-value=89 Score=23.22 Aligned_cols=58 Identities=5% Similarity=0.002 Sum_probs=41.3
Q ss_pred CCCCCCHH-HHHHHHhhCCCCeehhhHhhh--------hhcHHHHHHHHHHcCcEEEEecCCCCceeEec
Q 023374 133 KHDLKDKS-QLLVLVRKFPEGIAVIDLKDS--------YPTVMEDLQALKAAGQIWLLSNFDSQEDIAYP 193 (283)
Q Consensus 133 ~y~Ik~k~-~LL~lL~k~~~Gi~v~dLkD~--------~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ 193 (283)
.|++...+ .+|.+|-.+ +|+++.||.+. ++.+-..|+.|++.|-|...+. +...++++
T Consensus 5 ~~~Lt~~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~--~r~~~~~~ 71 (126)
T 1sd4_A 5 QVEISMAEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS--ENIYFYSS 71 (126)
T ss_dssp CCCCCHHHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEE
T ss_pred CCCCCHHHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeC--CCeEEEEE
Confidence 35665544 477888764 68999998886 4678999999999998877653 44334433
No 61
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=38.70 E-value=57 Score=25.49 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=34.9
Q ss_pred HHHHHhhCCCCeehhhHhhhhhc-----HHHHHHHHHHcCcEEEEecCCCCceeEe
Q 023374 142 LLVLVRKFPEGIAVIDLKDSYPT-----VMEDLQALKAAGQIWLLSNFDSQEDIAY 192 (283)
Q Consensus 142 LL~lL~k~~~Gi~v~dLkD~~p~-----~~~~I~~Le~~g~Ilvl~~kd~~~~ivf 192 (283)
+|.+|. .+++.+.||.+..++ +-..|+.|++.|-|--.....+..++.|
T Consensus 40 IL~~L~--~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y 93 (131)
T 1yyv_A 40 ILVALR--DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEY 93 (131)
T ss_dssp HHHHGG--GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEE
T ss_pred HHHHHH--cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEE
Confidence 455554 478999999988753 5788999999998876665544444433
No 62
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=38.30 E-value=18 Score=30.09 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC
Q 023374 78 IKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG 125 (283)
Q Consensus 78 i~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~ 125 (283)
+.+|.+++.+.+.|.|+.||.+++++.-..-...+.+|...--|..++
T Consensus 11 l~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 11 LLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 445666677788999999999999888543345667777766676654
No 63
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=37.98 E-value=72 Score=24.27 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=37.7
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPND 195 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND 195 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|....+. |.....|+..+
T Consensus 44 ~iL~~l~~~-~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 102 (152)
T 3bj6_A 44 AILEGLSLT-PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTP 102 (152)
T ss_dssp HHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECH
T ss_pred HHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEECh
Confidence 456666554 478888887765 5688899999999988887665 34444444443
No 64
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=37.64 E-value=69 Score=24.80 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=37.0
Q ss_pred HHHHHHHhhCCCCeehhhHhhhh--------hcHHHHHHHHHHcCcEEEEecCCCCceeEec
Q 023374 140 SQLLVLVRKFPEGIAVIDLKDSY--------PTVMEDLQALKAAGQIWLLSNFDSQEDIAYP 193 (283)
Q Consensus 140 ~~LL~lL~k~~~Gi~v~dLkD~~--------p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ 193 (283)
-.+|.+|-.+.+|+++.||.+.. +.+-..|+.|++.|-|...+ ++...++++
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~--~~r~~~~~~ 71 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR--DDRAHRYAP 71 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC-----CCEEEE
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe--cCCeEEEEe
Confidence 35788888766789999988864 57899999999999776654 455444443
No 65
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=37.59 E-value=46 Score=26.23 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=41.2
Q ss_pred HHHHHHhhC-CCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCCC-CceeEecCCC
Q 023374 141 QLLVLVRKF-PEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFDS-QEDIAYPNDP 196 (283)
Q Consensus 141 ~LL~lL~k~-~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd~-~~~ivf~ND~ 196 (283)
.+|.+|..+ .+|+++.||.+.+ +.+-..|+.|++.|-|....+..+ ....|+.-+.
T Consensus 50 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 111 (168)
T 3u2r_A 50 NTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDA 111 (168)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHH
Confidence 467777777 4899999998854 568899999999999887766543 3434544443
No 66
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.03 E-value=57 Score=24.70 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPND 195 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND 195 (283)
.+|.+|..+.+|+++.+|.+.. +.+-..|+.|++.|-|....+. |+....|+..+
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 98 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSS 98 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECH
Confidence 4667777656788888888754 5678899999999999877654 44444454443
No 67
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=36.87 E-value=97 Score=23.24 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDP 196 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~ 196 (283)
.+|.+|..+ +|+++.||.+. -+.+-..|+.|++.|-|....+. |.....++..+.
T Consensus 33 ~iL~~l~~~-~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~ 92 (144)
T 1lj9_A 33 LYLVRVCEN-PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEK 92 (144)
T ss_dssp HHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHH
T ss_pred HHHHHHHHC-cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChh
Confidence 456666655 47888888775 46688899999999999888765 444444444433
No 68
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=36.81 E-value=15 Score=29.74 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=44.9
Q ss_pred HHHHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCCCCceeEecCCCCCCCCCCHHHHHHhhh
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRD 212 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND~~~~~~VD~efk~lW~~ 212 (283)
.-.+|.+|. .+++++.||.+. -+.+-..|+.|++.|-|...+ +|...++..++.... .+-+-|..+|..
T Consensus 60 R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~--~Gr~~~y~lt~~~~~-~l~~~l~~~~~~ 132 (151)
T 3f6v_A 60 RRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK--DGRFRYYRLDPQGLA-QLRALFDSFWID 132 (151)
T ss_dssp HHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE--ETTEEEEEECHHHHH-HHHHHHHHHSCH
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe--cCCEEEEEEChHHHH-HHHHHHHHHHHH
Confidence 567888887 467889998874 456788999999999887654 466544444443322 233334455544
No 69
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=36.78 E-value=42 Score=24.31 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=38.0
Q ss_pred HHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCCeeeeecC
Q 023374 79 KRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSK 133 (283)
Q Consensus 79 ~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~~f~yKP~ 133 (283)
..|+++| ..++++.||.+.++++-+.=...+..|...--|....+.|...|.
T Consensus 34 ~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~g~y~l~~~ 85 (96)
T 1y0u_A 34 RKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGERWVVTDA 85 (96)
T ss_dssp HHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECTT
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCEEEECCC
Confidence 3577778 467999999998887666555677888888778765555555554
No 70
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=36.68 E-value=1.2e+02 Score=22.49 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDP 196 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~ 196 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|....+. |+....++..+.
T Consensus 37 ~iL~~l~~~-~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~ 96 (139)
T 3bja_A 37 GVIQVLAKS-GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKK 96 (139)
T ss_dssp HHHHHHHHS-CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHH
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHH
Confidence 356666553 578888888764 5789999999999999877665 444444444443
No 71
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=36.08 E-value=77 Score=22.33 Aligned_cols=44 Identities=5% Similarity=0.088 Sum_probs=32.3
Q ss_pred HHHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC
Q 023374 140 SQLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF 184 (283)
Q Consensus 140 ~~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k 184 (283)
-.+|.+|... +++++.||.+. .+.+-..|+.|++.|-|......
T Consensus 19 ~~iL~~L~~~-~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 19 LGIMIFLLPR-RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHhc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3466666543 57888888774 56688899999999988766544
No 72
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=35.83 E-value=23 Score=32.16 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=40.8
Q ss_pred HHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCCeeeeec
Q 023374 81 VIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKS 132 (283)
Q Consensus 81 vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~~f~yKP 132 (283)
|.++|...+.|+|++||.+.++++...-..|+.+|...-=++.++++|.--|
T Consensus 40 ifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~~~~y~~t~ 91 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLEEDRYVLAK 91 (363)
T ss_dssp HHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTEEEECH
T ss_pred HHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEecCCEEeccc
Confidence 4577777668999999999999876655678888888877777777777665
No 73
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=35.82 E-value=1.8e+02 Score=25.21 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHhccC-CCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCCeeeeecCCCCCCHHHHHHHHhhC--C
Q 023374 74 VGAQIKRVIDRLLETR-QAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKF--P 150 (283)
Q Consensus 74 v~tqi~~vvd~Lk~~~-~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~~f~yKP~y~Ik~k~~LL~lL~k~--~ 150 (283)
.......+...+.+.+ .|-.+.||.+.+++|-..-..++..|...-+|.-....+.|-+.. -+++.+.|+.+ .
T Consensus 139 ~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~~~~~----~~~~~~~l~~~~~~ 214 (258)
T 1lva_A 139 QKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHRQA----LGEAREVIKNLAST 214 (258)
T ss_dssp HHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEEEHHH----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEEcHHH----HHHHHHHHHHHHhc
Confidence 4444566777775543 477899999888887665567888888888776654434444432 24555555544 5
Q ss_pred CCeehhhHhhhhhc----HHHHHHHHHHcCcE
Q 023374 151 EGIAVIDLKDSYPT----VMEDLQALKAAGQI 178 (283)
Q Consensus 151 ~Gi~v~dLkD~~p~----~~~~I~~Le~~g~I 178 (283)
+.|++.+++|.+-- +..-++-|-+.|-.
T Consensus 215 ~~it~a~~Rd~lg~SRK~aIplLE~~Dr~g~T 246 (258)
T 1lva_A 215 GPFGLAEARDALGSSRKYVLPLLEYLDQVKFT 246 (258)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCcCHHHHHHHhCCcHHHHHHHHHHHhhcCce
Confidence 88999999999876 35556666565543
No 74
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=35.22 E-value=1.1e+02 Score=22.86 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=33.4
Q ss_pred HHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFDSQ 187 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd~~ 187 (283)
.+|.+|..+ +|+++.||.+. -+.+-..|+.|++.|-|....+..+.
T Consensus 41 ~iL~~l~~~-~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 41 LVLTILWDE-SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp HHHHHHHHS-SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 355566544 46888877764 57789999999999999887665333
No 75
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=34.62 E-value=81 Score=25.58 Aligned_cols=57 Identities=11% Similarity=0.139 Sum_probs=41.9
Q ss_pred HHHHHHhhCC-CCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCCC
Q 023374 141 QLLVLVRKFP-EGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPR 197 (283)
Q Consensus 141 ~LL~lL~k~~-~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~~ 197 (283)
.+|.+|..++ +|+++.+|.+.+ +.+-..|+.|++.|-|....+. |.....|+.-+.+
T Consensus 45 ~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G 107 (189)
T 3nqo_A 45 MTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLG 107 (189)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHH
Confidence 4567777765 789999988865 5578889999999999888765 4444455555443
No 76
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=34.23 E-value=97 Score=23.92 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDP 196 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~ 196 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|....+. |.....|+.-+.
T Consensus 54 ~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 113 (159)
T 3s2w_A 54 PFLMRLYRE-DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEK 113 (159)
T ss_dssp HHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHH
T ss_pred HHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHH
Confidence 566666554 788888887765 5578889999999999888766 344445554443
No 77
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=34.16 E-value=58 Score=25.82 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=37.4
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPR 197 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~~ 197 (283)
.+|.+|....+|+++.||.+.. +.+-..|+.|++.|-|....+. |.....|+.-+..
T Consensus 57 ~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G 118 (166)
T 3deu_A 57 VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKA 118 (166)
T ss_dssp HHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGG
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHH
Confidence 4677777767789999888754 5578889999999988777655 4444455555443
No 78
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=33.89 E-value=1e+02 Score=23.45 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=46.5
Q ss_pred HHHHHHHhcc--CCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC---Ceeeeec-CCCCCCHHHHHHHHhh
Q 023374 79 KRVIDRLLET--RQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG---KRFSYKS-KHDLKDKSQLLVLVRK 148 (283)
Q Consensus 79 ~~vvd~Lk~~--~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~---~~f~yKP-~y~Ik~k~~LL~lL~k 148 (283)
..|+.+|... +.|+|..||.+.+++....=..++..|+..-=|.... |.|.--. ...|. -.+++..+..
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~it-l~di~~~~e~ 86 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDAIT-AGDIIRVLEG 86 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGGCB-HHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHHCc-HHHHHHHHcC
Confidence 4566677554 5799999999888777666567889998887788763 3455533 33444 5566666653
No 79
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=33.79 E-value=36 Score=26.17 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC
Q 023374 140 SQLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF 184 (283)
Q Consensus 140 ~~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k 184 (283)
-.+|.+|..+++|+++.||.+.. +.+-..|+.|++.|-|....+.
T Consensus 42 ~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~ 90 (150)
T 3fm5_A 42 YSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDP 90 (150)
T ss_dssp HHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC----
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCc
Confidence 34677777777888988888754 5678899999999988766554
No 80
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=33.26 E-value=48 Score=25.17 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=40.7
Q ss_pred CCCCCHH-HHHHHHhhCC-CCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC-CCCceeEec
Q 023374 134 HDLKDKS-QLLVLVRKFP-EGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYP 193 (283)
Q Consensus 134 y~Ik~k~-~LL~lL~k~~-~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ 193 (283)
|++...+ .+|.+|..+. +|+++.||.+. .+.+-..|+.|++.|-|.-..++ |.....|+.
T Consensus 33 ~~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~L 99 (127)
T 2frh_A 33 FSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILV 99 (127)
T ss_dssp TCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEEC
T ss_pred cCCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEE
Confidence 4554433 4677776654 78999999884 47788899999999987665544 333434443
No 81
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.24 E-value=34 Score=27.44 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=39.0
Q ss_pred CChhHHHHHHHHHHHhccCCCCCHHHHhhhh---CCCCCCc--HHHHHhhhCCCc---eEEeCCeeeee
Q 023374 71 KSPVGAQIKRVIDRLLETRQAFTPEEINRDC---YVDVNAN--KAVFDSLRNNPK---VHYDGKRFSYK 131 (283)
Q Consensus 71 ~~~v~tqi~~vvd~Lk~~~~plt~~eI~~~~---~~di~~~--~~l~e~L~~npK---I~~d~~~f~yK 131 (283)
|.-+..|=..|+++|.+...++|.+||.+.+ +.+++.. ...++.|...-- |.+.++...|-
T Consensus 22 g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 90 (150)
T 2xig_A 22 GLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYE 90 (150)
T ss_dssp C--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 3345556678899999888899999998877 2344433 345566666544 44555654554
No 82
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=33.03 E-value=81 Score=23.89 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=35.1
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCC-CCceeEecC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFD-SQEDIAYPN 194 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd-~~~~ivf~N 194 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|....+.. +....++.-
T Consensus 46 ~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT 103 (150)
T 2rdp_A 46 VALQWLLEE-GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLL 103 (150)
T ss_dssp HHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEEC
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEEC
Confidence 355556553 477887777654 66888999999999998876653 334344433
No 83
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=32.52 E-value=89 Score=24.02 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDP 196 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~ 196 (283)
.+|.+|..+ +|+++.||.+. -+.+-..|+.|++.|-|...... |+....++..+.
T Consensus 48 ~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~ 107 (154)
T 2eth_A 48 YAFLYVALF-GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEK 107 (154)
T ss_dssp HHHHHHHHH-CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHH
Confidence 345555543 36777777764 45788899999999999887665 344444444433
No 84
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=32.52 E-value=42 Score=23.96 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=29.7
Q ss_pred HhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC
Q 023374 146 VRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF 184 (283)
Q Consensus 146 L~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k 184 (283)
|-...+|+++.||.+. -+.+-..|+.|++.|-|......
T Consensus 30 l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 30 MVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp HHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 3344678999998875 45688999999999998877544
No 85
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=32.45 E-value=69 Score=24.20 Aligned_cols=56 Identities=18% Similarity=0.040 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPR 197 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~~ 197 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|....++ |.....|+.-+.+
T Consensus 41 ~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G 101 (143)
T 3oop_A 41 SVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKG 101 (143)
T ss_dssp HHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHH
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHH
Confidence 356666655 789999888765 5578899999999998877655 4445455554443
No 86
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=31.82 E-value=1.3e+02 Score=23.34 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDP 196 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~ 196 (283)
.+|.+|..+ +|+++.||.+. -+.+-..|+.|++.|-|....+. |.....|+.-+.
T Consensus 50 ~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 109 (162)
T 3k0l_A 50 TALSVLAAK-PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPS 109 (162)
T ss_dssp HHHHHHHHC-TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHH
T ss_pred HHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHh
Confidence 355566554 47888887764 45688999999999999888765 444445554443
No 87
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.67 E-value=93 Score=23.28 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCCC
Q 023374 140 SQLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPR 197 (283)
Q Consensus 140 ~~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~~ 197 (283)
-.+|.+|....+|+++.||.+.. +.+-..|+.|++.|-|....+. |.....++..+..
T Consensus 40 ~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G 102 (146)
T 2fbh_A 40 WLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKA 102 (146)
T ss_dssp HHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhH
Confidence 35677773455778888887754 5688899999999999887654 4455556655554
No 88
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=31.12 E-value=1.2e+02 Score=23.01 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=41.5
Q ss_pred CCCCC-HHHHHHHHhhCCCC-eehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC-C-CCceeEecC
Q 023374 134 HDLKD-KSQLLVLVRKFPEG-IAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF-D-SQEDIAYPN 194 (283)
Q Consensus 134 y~Ik~-k~~LL~lL~k~~~G-i~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k-d-~~~~ivf~N 194 (283)
|++.. ...+|.+|.+++++ +++.||.+. -+.|-..|+.|++.|-|.-.... | +....+|.-
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~ 90 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKI 90 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEec
Confidence 34433 33578888877766 999988775 46789999999999988766433 2 234455543
No 89
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.05 E-value=33 Score=27.15 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHHHhccCCCCCHHHHhhhhC---CCCCCc--HHHHHhhhCCC---ceEEeCCeeeee
Q 023374 72 SPVGAQIKRVIDRLLETRQAFTPEEINRDCY---VDVNAN--KAVFDSLRNNP---KVHYDGKRFSYK 131 (283)
Q Consensus 72 ~~v~tqi~~vvd~Lk~~~~plt~~eI~~~~~---~di~~~--~~l~e~L~~np---KI~~d~~~f~yK 131 (283)
.-+..|=..|+++|.+...++|.+||.+.+. .+++.. ...++.|...- +|.++++...|.
T Consensus 10 ~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~ 77 (139)
T 3mwm_A 10 GRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYR 77 (139)
T ss_dssp CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEE
T ss_pred CccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEE
Confidence 3355566788999999888999999987763 344433 24556665544 444545544444
No 90
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=30.91 E-value=29 Score=24.99 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=37.7
Q ss_pred HHHHHHHhccC--CCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeC
Q 023374 79 KRVIDRLLETR--QAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG 125 (283)
Q Consensus 79 ~~vvd~Lk~~~--~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~ 125 (283)
..|+++|++.. .++|..||.+.++++-..=...+..|...-.|...+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 67899998875 589999999999987655456778888877887754
No 91
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.59 E-value=1.3e+02 Score=23.10 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPND 195 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND 195 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|....+. |.....|+..+
T Consensus 56 ~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~ 114 (162)
T 3cjn_A 56 RALAILSAK-DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTP 114 (162)
T ss_dssp HHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECH
T ss_pred HHHHHHHHC-CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECH
Confidence 355566543 477777777654 5688899999999999887665 44444444443
No 92
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=30.26 E-value=86 Score=22.15 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=36.2
Q ss_pred HHHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCCCCceeEec
Q 023374 140 SQLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFDSQEDIAYP 193 (283)
Q Consensus 140 ~~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ 193 (283)
-.+|.+|..+ +++++.||.+. .+.+-..|+.|++.|-|......|+....++.
T Consensus 23 ~~il~~l~~~-~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~ 79 (109)
T 1sfx_A 23 VRIYSLLLER-GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYS 79 (109)
T ss_dssp HHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEe
Confidence 3466777543 56788777764 45688999999999998877655444434443
No 93
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.93 E-value=42 Score=26.13 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHhccCCCCCHHHHhhhh---CCCCCC--cHHHHHhhhCCCceE---EeCCeeeee
Q 023374 74 VGAQIKRVIDRLLETRQAFTPEEINRDC---YVDVNA--NKAVFDSLRNNPKVH---YDGKRFSYK 131 (283)
Q Consensus 74 v~tqi~~vvd~Lk~~~~plt~~eI~~~~---~~di~~--~~~l~e~L~~npKI~---~d~~~f~yK 131 (283)
+..|=..|+++|.+.+.++|.+||.+.+ +.+++. =...++.|...--|. +.++...|-
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~ 74 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYR 74 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 4455667899999888999999998877 233333 235667777765554 445544554
No 94
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=29.86 E-value=1.3e+02 Score=23.45 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=47.2
Q ss_pred CCCCCHH-HHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCCCC
Q 023374 134 HDLKDKS-QLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPRV 198 (283)
Q Consensus 134 y~Ik~k~-~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~~~ 198 (283)
|+|...+ .+|.+|.++++|+...||.+. -+.+-..|+.|++.|-|.-..++ |.....|+.-+.+.
T Consensus 27 ~gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~ 97 (151)
T 4aik_A 27 LELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSS 97 (151)
T ss_dssp GCCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHH
Confidence 4554333 467788778888888887765 46678899999999999887765 55566777766653
No 95
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=29.28 E-value=2.9e+02 Score=24.22 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=55.9
Q ss_pred cCCCCCHHHHhhhhC-------CCCCCcH-----HHHHhhhCCCceEEeCCeeeeecC-CCC-CCHHHHHHHHhhCCCCe
Q 023374 88 TRQAFTPEEINRDCY-------VDVNANK-----AVFDSLRNNPKVHYDGKRFSYKSK-HDL-KDKSQLLVLVRKFPEGI 153 (283)
Q Consensus 88 ~~~plt~~eI~~~~~-------~di~~~~-----~l~e~L~~npKI~~d~~~f~yKP~-y~I-k~k~~LL~lL~k~~~Gi 153 (283)
++.-++++|+...+. -.|+.+. ..++.|-+-=+|.--++++.-+.. ..+ .+-..+|++++ ..+++
T Consensus 91 nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g~~v~~~~g~~~VqSvp~el~~D~~~vLela~-~~g~v 169 (234)
T 3cuq_A 91 NGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAE-KNGYV 169 (234)
T ss_dssp HSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSCCCCCHHHHHHHHHHT-TTSEE
T ss_pred cCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCCeEEEEECCEEEEEeCCCccchHHHHHHHHHH-hcCcC
Confidence 356677777755441 2344332 223334321122222355444443 333 33445667775 34889
Q ss_pred ehhhHhh--hhhc--HHHHHHHHHHcCcEEEEecC
Q 023374 154 AVIDLKD--SYPT--VMEDLQALKAAGQIWLLSNF 184 (283)
Q Consensus 154 ~v~dLkD--~~p~--~~~~I~~Le~~g~Ilvl~~k 184 (283)
++++|.+ +|.. |.+.|+.|+++|-+||=...
T Consensus 170 t~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD~q~ 204 (234)
T 3cuq_A 170 TVSEIKASLKWETERARQVLEHLLKEGLAWLDLQA 204 (234)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESSS
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeCCC
Confidence 9999998 6655 68899999999999987443
No 96
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=29.09 E-value=1.6e+02 Score=21.14 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEe--CCeeeeecCCCCCCHHHHHHHHhh
Q 023374 80 RVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVRK 148 (283)
Q Consensus 80 ~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d--~~~f~yKP~y~Ik~k~~LL~lL~k 148 (283)
.|+.+|.. .|+++.||.+.++++-+.=..-+..|...--|... +....|.-.. ..-.+++..|..
T Consensus 27 ~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~--~~~~~~~~~l~~ 93 (102)
T 3pqk_A 27 MLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE--AKAAQLVNALYT 93 (102)
T ss_dssp HHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS--STHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc--HHHHHHHHHHHH
Confidence 46777754 68999999998887766555677888877777763 4333344332 245666666543
No 97
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=28.80 E-value=44 Score=24.21 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=29.1
Q ss_pred eehhhHhh----hhhcHHHHHHHHHHcCcEEEEecCCCCceeEecC
Q 023374 153 IAVIDLKD----SYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPN 194 (283)
Q Consensus 153 i~v~dLkD----~~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~N 194 (283)
+++.||.+ .-+.+-..|+.|++.|-| ....|+....|+.-
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv--~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMV--ECELEGRTKIIRLT 74 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSE--EEEEETTEEEEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCc--cCCCCCCeEEEEEC
Confidence 99999988 456788999999999998 32334554455443
No 98
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=28.76 E-value=56 Score=24.25 Aligned_cols=31 Identities=6% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcc-CCCCCHHHHhhhhCCCCC
Q 023374 76 AQIKRVIDRLLET-RQAFTPEEINRDCYVDVN 106 (283)
Q Consensus 76 tqi~~vvd~Lk~~-~~plt~~eI~~~~~~di~ 106 (283)
..+..|++||.++ ..+++++||.+.+++...
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~ 38 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRR 38 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHH
Confidence 3578899999887 788999999998887654
No 99
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=28.37 E-value=1.2e+02 Score=22.48 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=43.1
Q ss_pred HHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCCCC--C-CCCCHHHHHHhhh
Q 023374 142 LLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPRV--P-IKADDDLKLLFRD 212 (283)
Q Consensus 142 LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~~~--~-~~VD~efk~lW~~ 212 (283)
+|.+|..+ +|+++.||.+. -+.+-..|+.|++.|-|...... |+....+...+... . -.+.+.+..++..
T Consensus 36 iL~~l~~~-~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~~~~~ 113 (142)
T 3bdd_A 36 ILQTLLKD-APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQAIKTS 113 (142)
T ss_dssp HHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 55566543 46788877764 46688899999999998877665 44444554443321 1 2344444444444
No 100
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=28.29 E-value=97 Score=22.73 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=31.5
Q ss_pred HHHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEe
Q 023374 140 SQLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLS 182 (283)
Q Consensus 140 ~~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~ 182 (283)
-.+|.+|. .+++++.||.+. -+.+-..|+.|++.|-|...+
T Consensus 29 ~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 29 IRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 46777776 467888888774 455789999999999887765
No 101
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=28.27 E-value=65 Score=23.67 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=34.6
Q ss_pred CHHHHHHHHhhCCCCeehhhHhhhhhcHHHHHHHHHHcCcEEEEe
Q 023374 138 DKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLS 182 (283)
Q Consensus 138 ~k~~LL~lL~k~~~Gi~v~dLkD~~p~~~~~I~~Le~~g~Ilvl~ 182 (283)
++.+|.+.|.....|++-.|.....-.+.+.|.+--.+|+-+-+.
T Consensus 2 tk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~ 46 (94)
T 1owf_B 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIR 46 (94)
T ss_dssp BHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEET
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEc
Confidence 578999999877668999998888888877777666666544443
No 102
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=28.24 E-value=84 Score=24.15 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=35.8
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDP 196 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~ 196 (283)
.+|.+|....+|+++.||.+.. +.+-..|+.|++.|-|....+. |.....++.-+.
T Consensus 51 ~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~ 111 (160)
T 3boq_A 51 DAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDA 111 (160)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChh
Confidence 4677775556788888888754 5789999999999988776554 344444444443
No 103
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=28.21 E-value=34 Score=24.44 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=28.9
Q ss_pred CCCCHHHHhhhhCCCCCCcHHHHHhhhCC---CceEEeCCeeeee
Q 023374 90 QAFTPEEINRDCYVDVNANKAVFDSLRNN---PKVHYDGKRFSYK 131 (283)
Q Consensus 90 ~plt~~eI~~~~~~di~~~~~l~e~L~~n---pKI~~d~~~f~yK 131 (283)
.-||++|..+++++..+ .+.++...| |.+.++|+++.++
T Consensus 15 ~~LTi~EaAeylgIg~~---~l~~L~~~~~~~~~~~~iG~~~lI~ 56 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGEN---KLRRLAEENKNANWLIMNGNRIQIK 56 (70)
T ss_dssp SEEEHHHHHHHTCSCHH---HHHHHHHHCTTCSSEEEETTEEEEE
T ss_pred ceeCHHHHHHHHCcCHH---HHHHHHHcCCCCCcEEEeCCEEEEE
Confidence 45899999998877765 355666665 6677899888776
No 104
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=28.07 E-value=57 Score=23.10 Aligned_cols=67 Identities=12% Similarity=0.204 Sum_probs=43.0
Q ss_pred HHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEe--CCeeeeecCCCCCCHHHHHHHHhh
Q 023374 79 KRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVRK 148 (283)
Q Consensus 79 ~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d--~~~f~yKP~y~Ik~k~~LL~lL~k 148 (283)
..|+.+|.. +.++|+.||.+.++++-+.-...+..|...--|... ++...|.... ....+|+..|..
T Consensus 27 ~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~--~~~~~l~~~l~~ 95 (99)
T 3cuo_A 27 LLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKN--EAVNAIIATLKN 95 (99)
T ss_dssp HHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECC--HHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEECh--HHHHHHHHHHHH
Confidence 356777754 568999999998987665555677888888878764 3333333221 123566666543
No 105
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=28.02 E-value=1.2e+02 Score=23.70 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=36.0
Q ss_pred HHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCC-CCceeEecCCC
Q 023374 142 LLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFD-SQEDIAYPNDP 196 (283)
Q Consensus 142 LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd-~~~~ivf~ND~ 196 (283)
+|.+|..+ +|+++.||.+. -+.|-..|+.|++.|-|....+.. .....|+.-+.
T Consensus 50 iL~~L~~~-~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~ 108 (168)
T 2nyx_A 50 TLVILSNH-GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKR 108 (168)
T ss_dssp HHHHHHHH-CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHH
T ss_pred HHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHH
Confidence 55566543 47888887774 455788999999999988776653 33444444433
No 106
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=27.63 E-value=1.2e+02 Score=23.12 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=36.0
Q ss_pred HHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC-CCCceeEecC
Q 023374 142 LLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPN 194 (283)
Q Consensus 142 LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~N 194 (283)
+|.+|..+ +|+++.+|.+. .+.+-..|+.|++.|-|...... |.....++.-
T Consensus 42 iL~~l~~~-~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 98 (155)
T 1s3j_A 42 VLASLKKH-GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLT 98 (155)
T ss_dssp HHHHHHHH-SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEEC
T ss_pred HHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEEC
Confidence 56666543 57888887764 46688899999999998877665 4444444443
No 107
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=27.61 E-value=39 Score=23.81 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=34.8
Q ss_pred HHHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEe
Q 023374 79 KRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD 124 (283)
Q Consensus 79 ~~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d 124 (283)
..|+++|.+. .++|..||.+.++++-..-...+..|...--|...
T Consensus 3 ~~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3678888765 57999999998988766556777888887778753
No 108
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=27.60 E-value=45 Score=22.51 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=26.7
Q ss_pred cCCChhHHHHHHHHHHHhccCCCCCHHHHh
Q 023374 69 IRKSPVGAQIKRVIDRLLETRQAFTPEEIN 98 (283)
Q Consensus 69 ~~~~~v~tqi~~vvd~Lk~~~~plt~~eI~ 98 (283)
|...|+.-|+..|=.||++-+..-.|+|+.
T Consensus 1 ~~~dPL~EQ~~~I~~~I~qAk~~rRfdEV~ 30 (48)
T 3v1a_A 1 GSGSPLAQQIKNIHSFIHQAKAAGRMDEVR 30 (48)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 356799999999999999999999999984
No 109
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=27.24 E-value=92 Score=22.69 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCeehhhHhh----hhhcHHHHHHHHHHcCcEEEEecCCCCceeEecCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKD----SYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPND 195 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD----~~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND 195 (283)
.+|.+| ..+++++.||.+ +-+.+-..|+.|++.|-|..... |....++.++
T Consensus 25 ~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~--gr~~~y~l~~ 79 (114)
T 2oqg_A 25 EILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV--GREIRYRALG 79 (114)
T ss_dssp HHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEECS
T ss_pred HHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec--CCEEEEEech
No 110
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=26.64 E-value=1.1e+02 Score=23.25 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF 184 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k 184 (283)
.+|.+|..+ +|+++.||.+. .+.+-..|+.|++.|-|....+.
T Consensus 51 ~iL~~l~~~-~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 97 (153)
T 2pex_A 51 LVMLVLWET-DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAA 97 (153)
T ss_dssp HHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred HHHHHHHhC-CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCc
Confidence 356666553 57888887764 46688899999999988877654
No 111
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=26.17 E-value=57 Score=26.89 Aligned_cols=39 Identities=13% Similarity=0.321 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCc
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQ 177 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~ 177 (283)
...||.+|+....++++.||.+.. +.|-.+|+.|++.|-
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~ 65 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGY 65 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 356888888766679998888754 558999999999987
No 112
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.17 E-value=69 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHhhhhCCC
Q 023374 75 GAQIKRVIDRLLETRQAFTPEEINRDCYVD 104 (283)
Q Consensus 75 ~tqi~~vvd~Lk~~~~plt~~eI~~~~~~d 104 (283)
.|.-.+|+++|. +.|+|..||...++++
T Consensus 10 ~T~Re~Ii~lL~--~~plta~ei~~~l~i~ 37 (105)
T 2gmg_A 10 ATRREKIIELLL--EGDYSPSELARILDMR 37 (105)
T ss_dssp HHHHHHHHHHTT--TSCBCTTHHHHSSCCC
T ss_pred ccHHHHHHHHHH--cCCCCHHHHHHHhCCC
Confidence 344568999997 7999999999977774
No 113
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=26.16 E-value=92 Score=23.13 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=32.4
Q ss_pred HHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFDS 186 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd~ 186 (283)
.+|.+|..+ +|+++.||.+. -+.+-..|+.|++.|-|....+..+
T Consensus 42 ~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d 90 (140)
T 2nnn_A 42 AALVRLGET-GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDD 90 (140)
T ss_dssp HHHHHHHHH-SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTE
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCC
Confidence 456666554 37888777765 4668889999999999887765533
No 114
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.11 E-value=65 Score=25.48 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHhccCCCCCHHHHhhhhC---CCCCCc--HHHHHhhhCCCceE
Q 023374 74 VGAQIKRVIDRLLETRQAFTPEEINRDCY---VDVNAN--KAVFDSLRNNPKVH 122 (283)
Q Consensus 74 v~tqi~~vvd~Lk~~~~plt~~eI~~~~~---~di~~~--~~l~e~L~~npKI~ 122 (283)
+..|=..|+++|.+...++|.+||.+.+. .+++.. ...++.|...--|.
T Consensus 20 ~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 44455678999998888999999988772 233332 35667777665554
No 115
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=25.92 E-value=1.2e+02 Score=23.05 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEE--EecC-CCCceeEecC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWL--LSNF-DSQEDIAYPN 194 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilv--l~~k-d~~~~ivf~N 194 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|.. ..+. |.....++.-
T Consensus 45 ~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT 104 (154)
T 2qww_A 45 AMINVIYST-PGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLS 104 (154)
T ss_dssp HHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEEC
T ss_pred HHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEEC
Confidence 456777665 578888887754 567889999999998877 5544 3333344443
No 116
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=25.51 E-value=78 Score=24.25 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPR 197 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~~ 197 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|....++ |.....|+.-+.+
T Consensus 45 ~iL~~l~~~-~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G 105 (149)
T 4hbl_A 45 LVMLTLWEE-NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNG 105 (149)
T ss_dssp HHHHHHHHS-SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHH
T ss_pred HHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHH
Confidence 456666555 788998888854 5678899999999988777654 4445455555544
No 117
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=25.35 E-value=1.4e+02 Score=22.83 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=35.7
Q ss_pred HHHHHHHhhCCCCeehhhHhh----hhhcHHHHHHHHHHcCcEEEEecCCCCceeEecCC
Q 023374 140 SQLLVLVRKFPEGIAVIDLKD----SYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPND 195 (283)
Q Consensus 140 ~~LL~lL~k~~~Gi~v~dLkD----~~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND 195 (283)
-.+|.+|.. +++++.||.+ +-+.+-..|+.|++.|-|...+ +|....++.++
T Consensus 49 l~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~--~gr~~~y~l~~ 104 (122)
T 1r1t_A 49 LRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK--QGRHVYYQLQD 104 (122)
T ss_dssp HHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE--ETTEEEEEESS
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE--eCCEEEEEECh
Confidence 356777753 6788888877 4566889999999999887755 35443333343
No 118
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=25.27 E-value=82 Score=22.54 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCeehhhHhh----hhhc-HHHHHHHHHHcCcEEEEecCCCCceeEe
Q 023374 141 QLLVLVRKFPEGIAVIDLKD----SYPT-VMEDLQALKAAGQIWLLSNFDSQEDIAY 192 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD----~~p~-~~~~I~~Le~~g~Ilvl~~kd~~~~ivf 192 (283)
.+|.+|..+..|+++.||.+ +-+. +-..|+.|++.|-|. ....|.....|+
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~-~~~~drR~~~~~ 74 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK-EETLSYRVKTLK 74 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE-EEEEETTEEEEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee-cCCCCCCeEEEE
No 119
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=25.25 E-value=65 Score=23.61 Aligned_cols=30 Identities=3% Similarity=0.206 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcc-C-CCCCHHHHhhhhCCCCC
Q 023374 77 QIKRVIDRLLET-R-QAFTPEEINRDCYVDVN 106 (283)
Q Consensus 77 qi~~vvd~Lk~~-~-~plt~~eI~~~~~~di~ 106 (283)
.|..|++||.++ . .++++++|.+.++++..
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~ 35 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPS 35 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHH
Confidence 477899999886 3 79999999998887654
No 120
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=24.89 E-value=1.3e+02 Score=23.26 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=43.6
Q ss_pred CCCCCHH-HHHHHHhhCC-CCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCCC
Q 023374 134 HDLKDKS-QLLVLVRKFP-EGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPR 197 (283)
Q Consensus 134 y~Ik~k~-~LL~lL~k~~-~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~~ 197 (283)
|+|.-.+ .+|.+|...+ +++++.||.+.. +.+-..|+.|++.|-|.-..+. |.....|+.-+.+
T Consensus 31 ~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G 101 (147)
T 4b8x_A 31 YGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKG 101 (147)
T ss_dssp GTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHH
Confidence 4554333 4677787665 679999987754 5678889999999999888765 4455566665544
No 121
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=24.69 E-value=42 Score=29.41 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=38.3
Q ss_pred HHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCCeeeeec
Q 023374 81 VIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKS 132 (283)
Q Consensus 81 vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~~f~yKP 132 (283)
|.+.|.+ .|+|++||.+.++++...=..|+++|...-=++.++++|..-|
T Consensus 31 i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~~~~y~~t~ 80 (335)
T 2r3s_A 31 VFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQAEGYRLTS 80 (335)
T ss_dssp HHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECH
T ss_pred hHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEecCCEEecCH
Confidence 3456653 7999999999999874433568899988888888888887765
No 122
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=24.67 E-value=1.9e+02 Score=21.46 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=35.4
Q ss_pred HHHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCCC
Q 023374 140 SQLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFDS 186 (283)
Q Consensus 140 ~~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd~ 186 (283)
..+|.+|....+|+++.||.+.. +.+-..|+.|++.|-|....+.++
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d 79 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGE 79 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 35677775345889999998865 568889999999998876655433
No 123
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=24.53 E-value=1.1e+02 Score=22.64 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=36.7
Q ss_pred CCCCCHH-HHHHHHhhCCCCeehhhHhhh--------hhcHHHHHHHHHHcCcEEEEec
Q 023374 134 HDLKDKS-QLLVLVRKFPEGIAVIDLKDS--------YPTVMEDLQALKAAGQIWLLSN 183 (283)
Q Consensus 134 y~Ik~k~-~LL~lL~k~~~Gi~v~dLkD~--------~p~~~~~I~~Le~~g~Ilvl~~ 183 (283)
+++...+ .+|.+|.. .+|+++.||.+. .+.+-..|+.|++.|-|....+
T Consensus 6 ~~lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 6 YEISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp CCCCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred ccCCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 4444333 57777766 578999998876 4568899999999998877765
No 124
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=24.53 E-value=82 Score=24.51 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=36.4
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecC-CCCceeEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDP 196 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND~ 196 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|....+. |.....|+.-+.
T Consensus 57 ~vL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~ 116 (161)
T 3e6m_A 57 RLLSSLSAY-GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRK 116 (161)
T ss_dssp HHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHH
T ss_pred HHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHH
Confidence 455666554 488888888744 5678899999999988777654 444445554443
No 125
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=24.29 E-value=59 Score=23.86 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcc-CCCCCHHHHhhhhCCCCC
Q 023374 77 QIKRVIDRLLET-RQAFTPEEINRDCYVDVN 106 (283)
Q Consensus 77 qi~~vvd~Lk~~-~~plt~~eI~~~~~~di~ 106 (283)
.|..|++||.++ ..+++++||.+.+++...
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~ 33 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSR 33 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHH
Confidence 367888888776 678999999998887644
No 126
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=23.93 E-value=44 Score=25.59 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=31.6
Q ss_pred HHHHHHhhCC-CCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC
Q 023374 141 QLLVLVRKFP-EGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF 184 (283)
Q Consensus 141 ~LL~lL~k~~-~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k 184 (283)
.+|.+|..++ +|+++.||.+. -+.+-..|+.|++.|-|....++
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 93 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPE 93 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC---
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCC
Confidence 4677777765 88999988774 46688999999999988766554
No 127
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=23.14 E-value=52 Score=25.53 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHhhhhCCC--CCCc--HHHHHhhhCCCceEEe--CCeeeeec
Q 023374 75 GAQIKRVIDRLLETRQAFTPEEINRDCYVD--VNAN--KAVFDSLRNNPKVHYD--GKRFSYKS 132 (283)
Q Consensus 75 ~tqi~~vvd~Lk~~~~plt~~eI~~~~~~d--i~~~--~~l~e~L~~npKI~~d--~~~f~yKP 132 (283)
...-..|+.+|-....++|..||.+.++.+ ++.. ..+++.|...--|... ++.|.|.|
T Consensus 8 t~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~ 71 (138)
T 2g9w_A 8 GDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAP 71 (138)
T ss_dssp CHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEe
Confidence 344567889998866799999999988743 3332 4688999888888764 45788877
No 128
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=23.03 E-value=1.7e+02 Score=23.00 Aligned_cols=49 Identities=10% Similarity=0.048 Sum_probs=35.2
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCCCCceeEe
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFDSQEDIAY 192 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf 192 (283)
.+|..|. .+++++.||.+.. +.+-..|+.|++.|-|--....++. ++.|
T Consensus 28 ~IL~~L~--~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 28 LIVRDAF--EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHHH--TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 3556664 4678999998865 4467889999999988877665454 4444
No 129
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.85 E-value=53 Score=26.78 Aligned_cols=60 Identities=13% Similarity=0.260 Sum_probs=36.4
Q ss_pred ChhHHHHHHHHHHHhccCCCCCHHHHhhhh-----CCCCCCc--HHHHHhhhCCCceE---EeCC--eeeee
Q 023374 72 SPVGAQIKRVIDRLLETRQAFTPEEINRDC-----YVDVNAN--KAVFDSLRNNPKVH---YDGK--RFSYK 131 (283)
Q Consensus 72 ~~v~tqi~~vvd~Lk~~~~plt~~eI~~~~-----~~di~~~--~~l~e~L~~npKI~---~d~~--~f~yK 131 (283)
.-+..|=..|+++|.+...++|.+||.+.+ +..++.. ..-++.|...--|. ++++ +|.+.
T Consensus 29 ~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 29 LKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELA 100 (162)
T ss_dssp CCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence 334455677899999998999999997766 3345433 24556666655443 4444 45443
No 130
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=22.62 E-value=48 Score=24.49 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=34.5
Q ss_pred HHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEe
Q 023374 80 RVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD 124 (283)
Q Consensus 80 ~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d 124 (283)
.|+..|...+.++|..||.+.++++-+.=...+..|...-=|...
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 577777777778999999998887766555677777777667765
No 131
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.57 E-value=1.3e+02 Score=22.25 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=33.0
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFDS 186 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd~ 186 (283)
.+|.+|..+ +|+++.||.+.. +.+-..|+.|++.|-|....+..+
T Consensus 40 ~iL~~l~~~-~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d 88 (142)
T 2fbi_A 40 RVIRILRQQ-GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKD 88 (142)
T ss_dssp HHHHHHHHH-CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCC
Confidence 356666553 468888887765 467889999999999987766533
No 132
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=22.49 E-value=1e+02 Score=22.00 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHcC-cEEEEecCC-CCceeEecC-CCCC
Q 023374 164 TVMEDLQALKAAG-QIWLLSNFD-SQEDIAYPN-DPRV 198 (283)
Q Consensus 164 ~~~~~I~~Le~~g-~Ilvl~~kd-~~~~ivf~N-D~~~ 198 (283)
.++++|.+|+-.| ..+|++|.+ |...|||-. |..+
T Consensus 15 sveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~y 52 (66)
T 3lyv_A 15 DVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNL 52 (66)
T ss_dssp CHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSE
T ss_pred CHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCE
Confidence 5788999998755 788889876 677788875 4443
No 133
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.34 E-value=2e+02 Score=22.40 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=32.9
Q ss_pred HHHHHHHHhhCCCCeehhhHhhh---------hhcHHHHHHHHHHcCcEEEEecCCCCce
Q 023374 139 KSQLLVLVRKFPEGIAVIDLKDS---------YPTVMEDLQALKAAGQIWLLSNFDSQED 189 (283)
Q Consensus 139 k~~LL~lL~k~~~Gi~v~dLkD~---------~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ 189 (283)
+..+|++|....+-++.+||-+. .+.|-..|+.|++.|-|.-+...++..+
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~ 75 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESV 75 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceE
Confidence 34556666555555555554332 4457888999999999888776555543
No 134
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=22.02 E-value=1.3e+02 Score=25.09 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHhhCCCCeehhhHhhhhhcHHHHHHHHHHcCcEEEEecCCCCc-eeEecCCCC
Q 023374 134 HDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQE-DIAYPNDPR 197 (283)
Q Consensus 134 y~Ik~k~~LL~lL~k~~~Gi~v~dLkD~~p~~~~~I~~Le~~g~Ilvl~~kd~~~-~ivf~ND~~ 197 (283)
+.|.+-++|+++|++. |+.| .=..+-.||++| .++=+++.+|.- ++..+++..
T Consensus 32 ~~I~tQeEL~~~L~~~--Gi~v-----TQATlSRDikEL----~lvKv~~~~G~~~~Y~lp~~~~ 85 (170)
T 3lap_A 32 AQVRSQNELAALLAAE--GIEV-----TQATLSRDLEEL----GAVKLRGADGGTGIYVVPEDGS 85 (170)
T ss_dssp SCCCSHHHHHHHHHHT--TCCC-----CHHHHHHHHHHH----TCEEECCTTCTTCEEECCC---
T ss_pred CCCCCHHHHHHHHHHc--CCCc-----CchhHHHHHHHc----CcEEeecCCCCEEEEEECcccc
No 135
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=21.90 E-value=66 Score=23.13 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=41.1
Q ss_pred HHHHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEe--CCeeeeecCCCCCCHHHHHHHHh
Q 023374 80 RVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR 147 (283)
Q Consensus 80 ~vvd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d--~~~f~yKP~y~Ik~k~~LL~lL~ 147 (283)
.|+.+|.+ .++++.||.+.++++-+.-..-+..|...--|... +....|.... ..-.+|+..|.
T Consensus 27 ~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~--~~~~~l~~~l~ 92 (98)
T 3jth_A 27 QILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKS--EEVKAMIKLLH 92 (98)
T ss_dssp HHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECC--HHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECH--HHHHHHHHHHH
Confidence 57788875 79999999998877655445677888887777764 3333333321 12445555554
No 136
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.49 E-value=1.2e+02 Score=22.64 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=32.1
Q ss_pred HHHHHHhhCCCCeehhhHhhhh----hcHHHHHHHHHHcCcEEEEecCCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDSY----PTVMEDLQALKAAGQIWLLSNFDS 186 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~~----p~~~~~I~~Le~~g~Ilvl~~kd~ 186 (283)
.+|.+|.. .+|+++.+|.+.. +.+-..|+.|++.|-|....+.++
T Consensus 37 ~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d 85 (145)
T 2a61_A 37 DILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPAD 85 (145)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCC
Confidence 35555554 3567777777654 667889999999999988766543
No 137
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=21.43 E-value=73 Score=23.37 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcc-CCCCCHHHHhhhhCCCCC
Q 023374 77 QIKRVIDRLLET-RQAFTPEEINRDCYVDVN 106 (283)
Q Consensus 77 qi~~vvd~Lk~~-~~plt~~eI~~~~~~di~ 106 (283)
.+..|++||.++ ..+++++||.+.+++...
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~ 36 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAV 36 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHH
Confidence 366788888776 568999999998887654
No 138
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=21.40 E-value=1.2e+02 Score=20.80 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=26.1
Q ss_pred cHHHHHHHHHH-cCcEEEEecCC-CCceeEecC-CCCC
Q 023374 164 TVMEDLQALKA-AGQIWLLSNFD-SQEDIAYPN-DPRV 198 (283)
Q Consensus 164 ~~~~~I~~Le~-~g~Ilvl~~kd-~~~~ivf~N-D~~~ 198 (283)
.++++|.+|+- .+..+|++|.+ |...+||-. |..+
T Consensus 14 sveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~y 51 (57)
T 3k2t_A 14 DSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKY 51 (57)
T ss_dssp CHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCE
T ss_pred CHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 57888899986 55788889876 777788875 4443
No 139
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=21.24 E-value=2.1e+02 Score=21.08 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=35.0
Q ss_pred HHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecC-CCCceeEecCC
Q 023374 142 LLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPND 195 (283)
Q Consensus 142 LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~k-d~~~~ivf~ND 195 (283)
+|.+|..+ +|+++.+|.+. -+.+-..|+.|++.|-|....+. |+....+...+
T Consensus 39 iL~~l~~~-~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~ 96 (138)
T 1jgs_A 39 VLCSIRCA-ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT 96 (138)
T ss_dssp HHHHHHHH-SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECH
T ss_pred HHHHHHhc-CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEECh
Confidence 45555443 46777777764 45788899999999998887665 33343444333
No 140
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=21.21 E-value=2.8e+02 Score=21.21 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=59.5
Q ss_pred ccccCCChhHHHHHHHHHH-Hhc----cCCCC-CHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCC--eeeeecCCCCC
Q 023374 66 INSIRKSPVGAQIKRVIDR-LLE----TRQAF-TPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGK--RFSYKSKHDLK 137 (283)
Q Consensus 66 ~nt~~~~~v~tqi~~vvd~-Lk~----~~~pl-t~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~--~f~yKP~y~Ik 137 (283)
+|.-.+.|+..||...|.- +.. -+..| |..+|.+.+++.-..=.+-+..|..--=|...++ +|.=.....+.
T Consensus 7 id~~s~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V~~~~~~~~ 86 (134)
T 4ham_A 7 INTKSQLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFIANQTDKLS 86 (134)
T ss_dssp CCTTSSSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEEEeCCchhhc
Confidence 5556677888887655432 222 35677 7889998888876655567777777777887765 56543344455
Q ss_pred CHHHHHHH---HhhC-----CCCeehhhHhhhh
Q 023374 138 DKSQLLVL---VRKF-----PEGIAVIDLKDSY 162 (283)
Q Consensus 138 ~k~~LL~l---L~k~-----~~Gi~v~dLkD~~ 162 (283)
+...+..+ |... ..|++.++|.+-+
T Consensus 87 ~~~~~~~~r~~l~~~~~~~~~~~~~~eel~~l~ 119 (134)
T 4ham_A 87 SPKKLAETRTKLKETILDLVYLGVNIEEIHKLA 119 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 55444332 2221 2688877776543
No 141
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=20.90 E-value=1.2e+02 Score=23.54 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEE
Q 023374 140 SQLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLL 181 (283)
Q Consensus 140 ~~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl 181 (283)
..||.+|+.. +.+++.||.+. -+.|-..|+.|++.|-|.-.
T Consensus 11 ~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 11 RGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 3688888865 56888888774 56689999999999988754
No 142
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=20.79 E-value=2.1e+02 Score=21.51 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=34.1
Q ss_pred HHHHHHhhCCCCeehhhHhhh----hhcHHHHHHHHHHcCcEEEEecCCCCceeEecCC
Q 023374 141 QLLVLVRKFPEGIAVIDLKDS----YPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPND 195 (283)
Q Consensus 141 ~LL~lL~k~~~Gi~v~dLkD~----~p~~~~~I~~Le~~g~Ilvl~~kd~~~~ivf~ND 195 (283)
.+|.+|.. .+++++.||.+. -+.+-..|+.|++.|-|... .+|....++.++
T Consensus 46 ~IL~~L~~-~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~--~~gr~~~y~l~~ 101 (122)
T 1u2w_A 46 KITYALCQ-DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFR--KEGKLALYSLGD 101 (122)
T ss_dssp HHHHHHHH-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC------CCEEEESC
T ss_pred HHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE--EECCEEEEEECH
Confidence 67777764 367888888774 56678999999999977654 345543444444
No 143
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=20.28 E-value=1.5e+02 Score=22.25 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=33.6
Q ss_pred HHHHhccCCCCCHHHHhhhhCCCCCCcHHHHHhhhCCCceEEeCC
Q 023374 82 IDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGK 126 (283)
Q Consensus 82 vd~Lk~~~~plt~~eI~~~~~~di~~~~~l~e~L~~npKI~~d~~ 126 (283)
+-.|...+.++|+.||.+.++++-+.-...+..|...-=|..+++
T Consensus 22 l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~~ 66 (139)
T 2x4h_A 22 IKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKED 66 (139)
T ss_dssp HHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecCC
Confidence 333334678999999999898876665678888888877777663
No 144
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=20.14 E-value=1.5e+02 Score=21.88 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=36.1
Q ss_pred HHHHHHHHhhCC---CCeehhhHhhhhhc-----HHHHHHHHHHcCcEEEEe
Q 023374 139 KSQLLVLVRKFP---EGIAVIDLKDSYPT-----VMEDLQALKAAGQIWLLS 182 (283)
Q Consensus 139 k~~LL~lL~k~~---~Gi~v~dLkD~~p~-----~~~~I~~Le~~g~Ilvl~ 182 (283)
++.+|++|+... .-..++|+....|+ |...+.+|..+|.+-..+
T Consensus 5 K~~Ile~l~~k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~leywS 56 (78)
T 1ucr_A 5 KQKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYWS 56 (78)
T ss_dssp HHHHHHHHSSHHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcccccccchHHHHHHHccccCHHHHHHHHHHHHhcCceEEEe
Confidence 677899998762 57889999999988 478999999999887664
Done!