BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023375
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 157/296 (53%), Gaps = 31/296 (10%)
Query: 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-LSSF 66
+ E+ RLL VVVGGGPTGVE +GEL D++ +D+R+ + + + + L+EA I L+ F
Sbjct: 180 DPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMF 239
Query: 67 DDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTE--------VPYGLLVWSTGV 117
+ +L YA + L + +++ +R V V+ ++L+ E +PYG L+W+TG
Sbjct: 240 EKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 299
Query: 118 GPSTLVKSL--DLPKSPGGR--IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ 173
++ L +P+ + + ++++L+V ++FA+GD + LP AQ
Sbjct: 300 KARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQ 352
Query: 174 VAERQGKYLFSLLNRIGKAGGGRAN--SAKD-----MELGD--PFVYRHLGSMATIGRYK 224
VA ++ +YL +++ + + N S KD E + PF Y LG++A +G +
Sbjct: 353 VAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSER 412
Query: 225 ALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDI 280
A+ +R K + + G +++ +WR YL+ ++S R+R V +W F RD
Sbjct: 413 AIATIRSGKRT-FYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDF 467
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 157/296 (53%), Gaps = 31/296 (10%)
Query: 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-LSSF 66
+ E+ RLL VVVGGGPTGVE +GEL D++ +D+R+ + + + + L+EA I L+ F
Sbjct: 211 DPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMF 270
Query: 67 DDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTE--------VPYGLLVWSTGV 117
+ +L YA + L + +++ +R V V+ ++L+ E +PYG L+W+TG
Sbjct: 271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 330
Query: 118 GPSTLVKSL--DLPKSPGGR--IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ 173
++ L +P+ + + ++++L+V ++FA+GD + LP AQ
Sbjct: 331 KARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQ 383
Query: 174 VAERQGKYLFSLLNRIGKAGGGRAN--SAKD-----MELGD--PFVYRHLGSMATIGRYK 224
VA ++ +YL +++ + + N S KD E + PF Y LG++A +G +
Sbjct: 384 VAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSER 443
Query: 225 ALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDI 280
A+ +R K + + G +++ +WR YL+ ++S R+R V +W F RD
Sbjct: 444 AIATIRSGKRT-FYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDF 498
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 67
E+ R+L VGGG VEF+G + Y Y+ + + IL FD
Sbjct: 205 EDAPKRML---CVGGGYIAVEFAG---------IFNGYKPCGGYVDLCY-RGDLILRGFD 251
Query: 68 DRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 121
+R T QL +G+R+ I K+ D S + NDGTE Y ++ + G P +
Sbjct: 252 TEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRS 311
Query: 122 LVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGD 155
LD + G + +D + + SV +++A+GD
Sbjct: 312 QALQLDKAGVRTGKNGAVQVDAYSKT-SVDNIYAIGD 347
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 67
E+ R+L VGGG VEF+G + Y Y+ + + IL FD
Sbjct: 205 EDAPKRML---CVGGGYIAVEFAG---------IFNGYKPCGGYVDLCY-RGDLILRGFD 251
Query: 68 DRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 121
+R T QL +G+R+ I K+ D S + NDGTE Y ++ + G P +
Sbjct: 252 TEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRS 311
Query: 122 LVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGD 155
LD + G + +D + + SV +++A+GD
Sbjct: 312 QALQLDKAGVRTGKNGAVQVDAYSKT-SVDNIYAIGD 347
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 38/178 (21%)
Query: 3 LAGI----SEEEKSRLL--------HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 50
LAG+ ++E+ RL+ + VV+GGG G+E + L+ F
Sbjct: 129 LAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKF-------------- 174
Query: 51 YIHVTLIEA-NEILSSF-DDRLRHYATTQLSKSGVRLVRGIVKDV---DSQKLI---LND 102
++VTL+EA +L+ + L + + GV L G D D K+ + D
Sbjct: 175 GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQD 234
Query: 103 GTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR-IGIDEWLRVPSVQDVFAVGDCSGY 159
G+ +P +++ G+ P V +L + GG + +DE+ R S+ DV+A+GDC+ +
Sbjct: 235 GSVIPADIVIVGIGIVPC--VGALISAGASGGNGVDVDEFCRT-SLTDVYAIGDCAAH 289
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 92 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
D + + L DG+ + YG L+W+TG P L
Sbjct: 92 DPAAHTVKLGDGSAIEYGKLIWATGGDPRRL 122
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 240
Query: 77 QLSKSGVRLVR-----GIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
QL+ +G++++ + + D S+ + G ++ + L++ + G P T K L L
Sbjct: 241 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 298
Query: 131 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
+ G + +DE+ R +V +++A+GD + + T + A A V
Sbjct: 299 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 345
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 191 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 239
Query: 77 QLSKSGVRLVR-----GIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
QL+ +G++++ + + D S+ + G ++ + L++ + G P T K L L
Sbjct: 240 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 297
Query: 131 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
+ G + +DE+ R +V +++A+GD + + T + A A V
Sbjct: 298 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 344
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 193 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 241
Query: 77 QLSKSGVRLVR-----GIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
QL+ +G++++ + + D S+ + G ++ + L++ + G P T K L L
Sbjct: 242 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 299
Query: 131 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
+ G + +DE+ R +V +++A+GD + + T + A A V
Sbjct: 300 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 346
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 76
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 240
Query: 77 QLSKSGVRLVR-----GIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130
QL+ +G++++ + + D S+ + G ++ + L++ + G P T K L L
Sbjct: 241 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 298
Query: 131 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
+ G + +DE+ R +V +++A+GD + + T + A A V
Sbjct: 299 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 345
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 28/188 (14%)
Query: 5 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEIL 63
IS E S+ V+VGGG G+E + L+D I T++E A++I+
Sbjct: 153 AISAGEVSK---AVIVGGGFIGLEMAVSLADMW-------------GIDTTVVELADQIM 196
Query: 64 SSFDDR-----LRH--YATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTG 116
F + LRH + +G ++VR + + ++ D + L++ + G
Sbjct: 197 PGFTSKSLSQMLRHDLEKNDVVVHTGEKVVR-LEGENGKVARVITDKRTLDADLVILAAG 255
Query: 117 VGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE-STGKTVLPALAQV 174
V P+T L + L P G I +D +R S D+FA GDC TGK L +
Sbjct: 256 VSPNTQLARDAGLELDPRGAIIVDTRMRT-SDPDIFAGGDCVTIPNLVTGKPGFFPLGSM 314
Query: 175 AERQGKYL 182
A RQG+ +
Sbjct: 315 ANRQGRVI 322
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 36/186 (19%)
Query: 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYA 74
H VVVGGG G+E ++ K V+++EA E IL ++D L
Sbjct: 173 HLVVVGGGYIGLELG--------------IAYRKLGAQVSVVEARERILPTYDSELTAPV 218
Query: 75 TTQLSKSGVRLVRG-IVKDVDSQKLILNDGT----EVPYGLLVWSTGVGPSTL---VKSL 126
L K G+ L G V+ ++ L+ NDG + ++ + G P T ++ L
Sbjct: 219 AESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECL 278
Query: 127 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 186
DL K G I IDE + S+ +V+A+GD +G P LA A QG+ + ++
Sbjct: 279 DL-KMNGAAIAIDERCQT-SMHNVWAIGDVAGE---------PMLAHRAMAQGEMVAEII 327
Query: 187 NRIGKA 192
GKA
Sbjct: 328 A--GKA 331
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 53 HVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILND-GTEVPYGLL 111
HV LI + D+ L + L ++GV+ ++S+ L N+ G G +
Sbjct: 168 HVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFF------LNSELLEANEEGVLTNSGFI 221
Query: 112 VWSTGVGPSTLVKSLDLPKSPGGRIG----IDEWLRVPSVQDVFAVGDCSGYLESTGKTV 167
+ +V ++DL + G G ID+ R S +DV+A+GDC+ Y +
Sbjct: 222 EGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFRT-SAKDVYAIGDCAEY-----SGI 275
Query: 168 LPALAQVAERQGKYLFSLL 186
+ A+ A Q + L +L
Sbjct: 276 IAGTAKAAMEQARVLADIL 294
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 34/117 (29%)
Query: 17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 76
V+VG GP G E + +LS Q Y VT+I+ + L HY
Sbjct: 11 VVIVGNGPGGFELAKQLS--------QTY-------EVTVIDKEPVPYYSKPMLSHYIAG 55
Query: 77 QLSKSGVRLV---------RGI-------VKDVD-SQKLILNDGTEVPYGLLVWSTG 116
+ ++ RL RGI K +D +K+++ + EVPY LV +TG
Sbjct: 56 FIPRN--RLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATG 110
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 27/188 (14%)
Query: 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSF 66
+E+K R H V+GGG GVE + ++R+R I VTL+E AN++
Sbjct: 183 DEKKPR--HATVIGGGFIGVEX--------VENLRER------GIEVTLVEXANQVXPPI 226
Query: 67 DDRLRHYATTQLSKSGVRLV--RGIVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGP-STL 122
D Y V LV G+ ++ ++ L G+ + L+ + GV P S+L
Sbjct: 227 DYEXAAYVHEHXKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDXLILAIGVQPESSL 286
Query: 123 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC---SGYLESTGKTVLPALAQVAERQG 179
K L G I ++E + S ++A+GD ++ T +T +P LA A RQG
Sbjct: 287 AKGAGLALGVRGTIKVNEKFQT-SDPHIYAIGDAIEVKDFVTET-ETXIP-LAWPANRQG 343
Query: 180 KYLFSLLN 187
+ L +++
Sbjct: 344 RXLADIIH 351
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 25/181 (13%)
Query: 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSF 66
EE + ++G G G E + S+ Q Y +V LI+ +E + F
Sbjct: 144 EEAPKAKTITIIGSGYIGAELAEAYSN-------QNY-------NVNLIDGHERVLYKYF 189
Query: 67 DDRLRHYATTQLSKSGVRLVRG----IVKDVDSQKLILN-DGTEVPYGLLVWSTGVGPST 121
D GV LV G ++VD + + DG E+ + + G P+T
Sbjct: 190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNT 249
Query: 122 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG--YLESTGKTVLPALAQVAERQG 179
+ + G I DE++ S +D+FA GD + Y + +P LA A RQG
Sbjct: 250 ELLKGKVAMLDNGAIITDEYMH-SSNRDIFAAGDSAAVHYNPTNSNAYIP-LATNAVRQG 307
Query: 180 K 180
+
Sbjct: 308 R 308
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 24/187 (12%)
Query: 50 DYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPY 108
D +HVT+ E LS R + ++ G++LV +K++ +++ G +P
Sbjct: 200 DKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPA 259
Query: 109 G---LLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS-------G 158
LL TG P+ + DL GG I D + +V+AVGD + G
Sbjct: 260 DITILLPPYTG-NPALKNSTPDLVDD-GGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLG 317
Query: 159 YLE-STGKTVLPALAQ---VAERQGKYLFSLLNRIGKAGGGRANSAKD-------MELGD 207
YL TG+ LA V + KY +++ G A S KD + + D
Sbjct: 318 YLAVMTGRIAAQHLANRLGVPTKVDKYYPTIVCVADNPYEGYAVSVKDDTWYGGTVSIAD 377
Query: 208 PFVYRHL 214
P HL
Sbjct: 378 PAAVNHL 384
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 99 ILNDGTEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
++ D L+V + GV P+T L +L+L P G I DE++R S DVFAVGD
Sbjct: 226 VVTDKNAYDADLVVVAVGVRPNTAWLKGTLEL--HPNGLIKTDEYMRT-SEPDVFAVGDA 282
Query: 157 SGYLESTGKT-VLPALAQVAERQGKY 181
+ + T V ALA A +QG++
Sbjct: 283 TLIKYNPADTEVNIALATNARKQGRF 308
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 99 ILNDGTEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
++ D L+V + GV P+T L +L+L P G I DE++R S DVFAVGD
Sbjct: 226 VVTDKNAYDADLVVVAVGVRPNTAWLKGTLEL--HPNGLIKTDEYMRT-SEPDVFAVGDA 282
Query: 157 SGYLESTGKT-VLPALAQVAERQGKY 181
+ + T V ALA A +QG++
Sbjct: 283 TLIKYNPADTEVNIALATNARKQGRF 308
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 99 ILNDGTEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
++ D L+V + GV P+T L +L+L P G I DE++R S DVFAVGD
Sbjct: 226 VVTDKNAYDADLVVVAVGVRPNTAWLKGTLEL--HPNGLIKTDEYMRT-SEPDVFAVGDA 282
Query: 157 SGYLESTGKT-VLPALAQVAERQGKY 181
+ + T V ALA A +QG++
Sbjct: 283 TLIKYNPADTEVNIALATNARKQGRF 308
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 99 ILNDGTEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
++ D L+V + GV P+T L +L+L P G I DE++R S DVFAVGD
Sbjct: 226 VVTDKNAYDADLVVVAVGVRPNTAWLKGTLEL--HPNGLIKTDEYMRT-SEPDVFAVGDA 282
Query: 157 SGYLESTGKT-VLPALAQVAERQGKY 181
+ + T V ALA A +QG++
Sbjct: 283 TLIKYNPADTEVNIALATNARKQGRF 308
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 99 ILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 158
++ D L+V + GV P+T L P G I DE++R S DVFAVGD +
Sbjct: 226 VVTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDATL 284
Query: 159 YLESTGKT-VLPALAQVAERQGKY 181
+ T V ALA A +QG++
Sbjct: 285 IKYNPADTEVNIALATNARKQGRF 308
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 44/179 (24%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 76
VV+GGG G+E ++F + VT++E A EILS F+ ++
Sbjct: 174 VVIGGGYIGIELGTAYANFGTK--------------VTILEGAGEILSGFEKQMAAIIKK 219
Query: 77 QLSKSGVRLV-RGIVKDVDSQKLILNDGTEVPY-----------GLLVWSTGVGPSTL-- 122
+L K GV +V + K + ++ DG V Y ++ + G P+T
Sbjct: 220 RLKKKGVEVVTNALAKGAEERE----DGVTVTYEANGETKTIDADYVLVTVGRRPNTDEL 275
Query: 123 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 180
++ + + + G I +D+ R SV ++FA+GD PALA A +GK
Sbjct: 276 GLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDI---------VPGPALAHKASYEGK 324
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 99 ILNDGTEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156
++ D L+V + GV P+T L +L+L P G I DE++R S DVFAVGD
Sbjct: 226 VVTDKNAYDADLVVVAVGVRPNTAWLKGTLEL--HPNGLIKTDEYMRT-SEPDVFAVGDA 282
Query: 157 SGYLESTGKT-VLPALAQVAERQGKY 181
+ + T V ALA A +QG++
Sbjct: 283 TLIKYNPADTEVNIALATNAMKQGRF 308
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 22/165 (13%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VGGG GVEF+ + F V+ H D IL +FD LR
Sbjct: 195 VIVGGGYIGVEFA---NIFHGLGVKTTLLHRGDL----------ILRNFDYDLRQLLNDA 241
Query: 78 LSKSGVRLV-RGIVKDVDSQK----LILNDGTEVPYGLLVWSTGVGPSTLVKSLD---LP 129
+ G+ ++ V V S + ++L +G + ++ +TG P+T L+ +
Sbjct: 242 MVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVK 301
Query: 130 KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 174
+ G + +DE + +V ++AVGD +G+++ T + A+ V
Sbjct: 302 VNEFGAVVVDEKM-TTNVSHIWAVGDVTGHIQLTPVAIHDAMCFV 345
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 24/126 (19%)
Query: 55 TLIEANEILSSFDDR--LRH----------YATTQLSKSGVRLV-RGIVKDVDSQKLI-- 99
+ +E EILSS+ + L H Y T K V V +VK++ K++
Sbjct: 165 SALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQ 224
Query: 100 -----LNDG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 151
L G E+ + G P T KS + G I +DEW+R SV VF
Sbjct: 225 VVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRT-SVPGVF 283
Query: 152 AVGDCS 157
A GDC+
Sbjct: 284 AAGDCT 289
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 24/126 (19%)
Query: 55 TLIEANEILSSFDDR--LRH----------YATTQLSKSGVRLV-RGIVKDVDSQKLI-- 99
+ +E EILSS+ + L H Y T K V V +VK++ K++
Sbjct: 165 SALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQ 224
Query: 100 -----LNDG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 151
L G E+ + G P T KS + G I +DEW+R SV VF
Sbjct: 225 VVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRT-SVPGVF 283
Query: 152 AVGDCS 157
A GDC+
Sbjct: 284 AAGDCT 289
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Query: 10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS-FDD 68
E +++ ++GGG G+E + + + V +IE N+ + + +D
Sbjct: 182 ETNKVEDVTIIGGGAIGLEMAETFVELGKK--------------VRMIERNDHIGTIYDG 227
Query: 69 RLRHYATTQLSKSGVRLVRG----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LV 123
+ Y + K + ++ K + + + D L++ S GV P+T +
Sbjct: 228 DMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTDFL 287
Query: 124 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159
+ ++ + G I ++ +++ +VQDV+A GDC+ +
Sbjct: 288 EGTNIRTNHKGAIEVNAYMQT-NVQDVYAAGDCATH 322
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 78 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 123
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 124 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 348
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 78 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 123
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 124 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 348
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 174 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 220
Query: 78 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 123
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 221 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 280
Query: 124 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 281 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 331
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 176 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 222
Query: 78 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 123
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 223 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 282
Query: 124 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 283 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 333
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 174 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 220
Query: 78 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 123
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 221 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 280
Query: 124 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 281 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 331
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 192 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 238
Query: 78 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 123
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 239 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 298
Query: 124 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 299 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 349
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 190 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 236
Query: 78 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 123
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 237 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 296
Query: 124 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 297 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 347
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 78 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 123
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 124 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 348
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 78 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 123
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 124 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 348
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 77
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNXTEE 237
Query: 78 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 123
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKD 297
Query: 124 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 178
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 348
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 26/183 (14%)
Query: 6 ISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILS 64
I++ E + VVG G GVE L++ R ++ V LI+ + L+
Sbjct: 186 IAKLENKDIKRVAVVGAGYIGVE----LAEAFQRKGKE----------VVLIDVVDTCLA 231
Query: 65 SFDDR-LRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGP 119
+ DR L + + G++L G VK+V + I+ D E +++ + G P
Sbjct: 232 GYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRP 291
Query: 120 STLVKS--LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG-YLESTGKTVLPALAQVAE 176
+T + + +DL ++ + + +P V +A+GDC+ Y +T T ALA A
Sbjct: 292 NTTLGNGKIDLFRNGAFLVNKRQETSIPGV---YAIGDCATIYDNATRDTNYIALASNAV 348
Query: 177 RQG 179
R G
Sbjct: 349 RTG 351
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 75/192 (39%), Gaps = 42/192 (21%)
Query: 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYA 74
H VVGGG G+E L I TL+E A+++++ D + +A
Sbjct: 153 HATVVGGGFIGLEMMESLHHL--------------GIKTTLLELADQVMTPVDREMAGFA 198
Query: 75 TTQLSKSGVRLVRGIV------------------KDVDSQK------LILNDGTEVPYGL 110
+ GV L G +D Q L L++G + L
Sbjct: 199 HQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDL 258
Query: 111 LVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE-STGKTVL 168
L+ + GV P T L + L G I ++ ++ S ++AVGD + TG+ L
Sbjct: 259 LIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACL 317
Query: 169 PALAQVAERQGK 180
LA A RQG+
Sbjct: 318 VPLAGPANRQGR 329
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 26/183 (14%)
Query: 6 ISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILS 64
I++ E + VVG G GVE L++ R ++ V LI+ + L+
Sbjct: 186 IAKLENKDIKRVAVVGAGYIGVE----LAEAFQRKGKE----------VVLIDVVDTCLA 231
Query: 65 SFDDR-LRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGP 119
+ DR L + + G++L G VK+V + I+ D E +++ + G P
Sbjct: 232 GYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRP 291
Query: 120 STLVKS--LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG-YLESTGKTVLPALAQVAE 176
+T + + +DL ++ + + +P V +A+GDC+ Y +T T ALA A
Sbjct: 292 NTTLGNGKIDLFRNGAFLVNKRQETSIPGV---YAIGDCATIYDNATRDTNYIALASNAV 348
Query: 177 RQG 179
R G
Sbjct: 349 RTG 351
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 36/190 (18%)
Query: 3 LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62
LA + E S+ + V+G GP G E DF+++ K +HV N +
Sbjct: 138 LAAVPLLENSQTV--AVIGAGPIGXE----AIDFLVK--------XKKTVHVFESLENLL 183
Query: 63 LSSFDDRLRHYATTQLSKSGV------------RLVRGIVKDVDSQKLILNDGTEVPYGL 110
FD L K V GIV + Q++ + G
Sbjct: 184 PKYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDSG------- 236
Query: 111 LVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLP 169
+++ + P + ++ I +D +L+ SV +VFA+GDC S E +T
Sbjct: 237 -IFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQT-SVPNVFAIGDCISVXNEPVAETFYA 294
Query: 170 ALAQVAERQG 179
L A R G
Sbjct: 295 PLVNNAVRTG 304
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 71/151 (47%), Gaps = 11/151 (7%)
Query: 10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR 69
E +++ ++GGG G+E + F+ + R D+I T+ + + + +
Sbjct: 182 ETNKVEDVTIIGGGAIGLEXA---ETFVELGKKVRXIERNDHIG-TIYDGDXAEYIYKEA 237
Query: 70 LRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDL 128
+H+ L+ V+ +G + + + D L++ S GV P+T ++ ++
Sbjct: 238 DKHHIEI-LTNENVKAFKG----NERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNI 292
Query: 129 PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159
+ G I ++ + + +VQDV+A GDC+ +
Sbjct: 293 RTNHKGAIEVNAYXQT-NVQDVYAAGDCATH 322
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 16 HCVVVGGGPTGVEFSGEL-SDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 74
H VV+G G G+EF+ + + DV + V + + EI S F D RH
Sbjct: 144 HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV-----MARVVTPEISSYFHD--RHSG 196
Query: 75 TTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG 134
GVR + ++L+DG +P L+V GV P+ + + + G
Sbjct: 197 AGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG 256
Query: 135 RIGIDEWLRVPSVQDVFAVGDCS 157
I +D+ L + S + A+GDC+
Sbjct: 257 II-VDQQL-LTSDPHISAIGDCA 277
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 87 RGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKS 131
R + D + +KL+L GT + YG LV +TG + LD+P +
Sbjct: 78 RMVSIDREGRKLLLASGTAIEYGHLVLATG----ARNRMLDVPNA 118
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 60 NEILSSFDDRLRHYATTQLSKSGVRLVRGI----VKDVDSQKLI--LNDGTEVP-YGLLV 112
N IL FD+ + + + K+ + +V +K V + L L+DG + ++
Sbjct: 209 NRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVI 268
Query: 113 WSTGVGPSTLVKSLDLPK----SPGGRIGIDEWLRVPSVQDVFAVGDCS 157
+ G P T ++L L K + I +DE R SV +++AVGDC
Sbjct: 269 YCVGRSPDT--ENLKLEKLNVETNNNYIVVDENQRT-SVNNIYAVGDCC 314
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 19 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 78
++G G G+E +G L F + V +E + +L FD L +
Sbjct: 171 IIGAGYIGIELAGLLRSF------------GSEVTVVALE-DRLLFQFDPLLSATLAENM 217
Query: 79 SKSGVRL-----VRGIVKDVDSQKLILNDGTEVP-YGLLVWSTGVGPSTL---VKSLDLP 129
G+ V + +D L+ DGT + + ++W+ G P+T +++ +
Sbjct: 218 HAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIE 277
Query: 130 KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 177
G + D + +V V+A+GD +G + T + A ++AER
Sbjct: 278 VQSNGMVPTDAYQNT-NVPGVYALGDITGRDQLT-PVAIAAGRRLAER 323
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 92 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
D + + L+DG +PYG LV +TG P L
Sbjct: 86 DPQAHTVALSDGRTLPYGTLVLATGAAPRAL 116
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 92 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 122
D + + L+DG +PYG LV +TG P L
Sbjct: 86 DPQAHTVALSDGRTLPYGTLVLATGAAPRAL 116
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 102 DGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGID----EWLRVPSVQDVFAVGDC 156
DGTE + ++W TG P+ + +K LDL +P G++ +D L VPSV + GD
Sbjct: 268 DGTERAFDAVIWCTGFRPALSHLKGLDL-VTPQGQVEVDGSGLRALAVPSVW-LLGYGDW 325
Query: 157 SGYLEST 163
+G +T
Sbjct: 326 NGMASAT 332
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 64 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 123
+++ DR+ L K+ V +++G + VD++ L +N G + ++ +TG PS
Sbjct: 89 TAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN-GETITADHILIATGGRPSH-- 145
Query: 124 KSLDLPKSPGGRIGIDE--WLRVPSVQDVFAV 153
P PG GID + +P++ + AV
Sbjct: 146 -----PDIPGVEYGIDSDGFFALPALPERVAV 172
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 64 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 123
+++ DR+ L K+ V +++G + VD++ L +N G + ++ +TG PS
Sbjct: 89 TAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN-GETITADHILIATGGRPSH-- 145
Query: 124 KSLDLPKSPGGRIGIDE--WLRVPSVQDVFAV 153
P PG GID + +P++ + AV
Sbjct: 146 -----PDIPGVEYGIDSDGFFALPALPERVAV 172
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 35 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 94
D DV + + +++D IH+T + + IL+ R + K+G +RG + V
Sbjct: 6 DISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFXIRGALNAVR 65
Query: 95 SQKLILNDGTEVPYGLLVWSTG 116
S L+ + P ++ S+G
Sbjct: 66 S--LVPDALERKPKAVVTHSSG 85
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 35 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 94
D DV + + +++D IH+T + + IL+ R + K+G +RG + V
Sbjct: 6 DISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVR 65
Query: 95 SQKLILNDGTE-VPYGLLVWSTG 116
S ++ D E P ++ S+G
Sbjct: 66 S---LVPDALERKPKAVVTHSSG 85
>pdb|3BIP|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIP|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIQ|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 467
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 106 VPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLR---VPSVQDVFAVGDCSGYLES 162
VP +++ ++ L K++DL K P +I ++ W R P + D + S
Sbjct: 70 VPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKL-FDDVIALINS 128
Query: 163 TGKTVLPALAQVAERQGKYL 182
GKTV + + QGK++
Sbjct: 129 AGKTV--GIPEKDSYQGKFM 146
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 42/198 (21%)
Query: 10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDD 68
+ + + H VVGGG G+E L I TL+E A+++ + D
Sbjct: 147 QXNNVEHATVVGGGFIGLEXXESLHHL--------------GIKTTLLELADQVXTPVDR 192
Query: 69 RLRHYATTQLSKSGVRLVRGIV------------------KDVDSQK------LILNDGT 104
+A + GV L G +D Q L L++G
Sbjct: 193 EXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGE 252
Query: 105 EVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE-S 162
+ LL+ + GV P T L + L G I ++ + S ++AVGD +
Sbjct: 253 LLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQT-SDPAIYAVGDAVEEQDFV 311
Query: 163 TGKTVLPALAQVAERQGK 180
TG+ L LA A RQG+
Sbjct: 312 TGQACLVPLAGPANRQGR 329
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 42/198 (21%)
Query: 10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDD 68
+ + + H VVGGG G+E L I TL+E A+++ + D
Sbjct: 147 QXNNVEHATVVGGGFIGLEXXESLHHL--------------GIKTTLLELADQVXTPVDR 192
Query: 69 RLRHYATTQLSKSGVRLVRGIV------------------KDVDSQK------LILNDGT 104
+A + GV L G +D Q L L++G
Sbjct: 193 EXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGE 252
Query: 105 EVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE-S 162
+ LL+ + GV P T L + L G I ++ + S ++AVGD +
Sbjct: 253 LLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQT-SDPAIYAVGDAVEEQDFV 311
Query: 163 TGKTVLPALAQVAERQGK 180
TG+ L LA A RQG+
Sbjct: 312 TGQACLVPLAGPANRQGR 329
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 27/166 (16%)
Query: 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 67
EE+ ++ VVVG G G+E +G +H+ +I +L FD
Sbjct: 182 EEQPKKV---VVVGAGYIGIELAGVFHGL------GSETHL-------VIRGETVLRKFD 225
Query: 68 DRLRHYATTQLSKSGVRL--VRGIVK-----DVDSQKLILNDGTEV-PYGLLVWSTGVGP 119
+ +++ T K G+ + + IVK + D K+ +ND + L+W+ G
Sbjct: 226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKS 285
Query: 120 STLV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163
+ +++ + + +I DE+ +V +++++GD G +E T
Sbjct: 286 HLGMGSENVGIKLNSHDQIIADEYQNT-NVPNIYSLGDVVGKVELT 330
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 38/154 (24%)
Query: 19 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE------ANEILSSFDDRLR- 71
V+GGG +GVE + +L+ + HVTL+E A+++L D++R
Sbjct: 360 VIGGGNSGVEAAIDLAGIVE--------------HVTLLEFAPEMKADQVLQ---DKVRS 402
Query: 72 --------HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 123
+ TT++ G ++V ++ + + D V + G+ P+T
Sbjct: 403 LKNVDIILNAQTTEVKGDGSKVV-----GLEYRDRVSGDIHSVALAGIFVQIGLLPNTHW 457
Query: 124 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 157
L ++ G I ID SV+ VFA GDC+
Sbjct: 458 LEGALERNRMGEIIIDAKCET-SVKGVFAAGDCT 490
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD- 68
+ H V++G G G+ + E+ + + DY + +N + DD
Sbjct: 1 MAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ--FVPSNPWVGVGWKERDDI 58
Query: 69 --RLRHYATTQLSKSGVRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTG 116
+RHY + + G+ + + +D+ Q + L DG V Y L+ +TG
Sbjct: 59 AFPIRHY----VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATG 106
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD- 68
+ H V++G G G+ + E+ + + DY + +N + DD
Sbjct: 1 MAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ--FVPSNPWVGVGWKERDDI 58
Query: 69 --RLRHYATTQLSKSGVRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTG 116
+RHY + + G+ + + +D+ Q + L DG V Y L+ +TG
Sbjct: 59 AFPIRHY----VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATG 106
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 29/172 (16%)
Query: 16 HCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANEIL-SSFDDRLRHY 73
H +VVG G TG EF ++ + V HV Y +A +L SF +R
Sbjct: 184 HLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDA---DAALVLEESFAERGVRL 240
Query: 74 ATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG 133
+ S R G++ + + DG V + + G P+T L L + G
Sbjct: 241 FKNARAASVTRTGAGVL-------VTMTDGRTVEGSHALMTIGSVPNT--SGLGLERV-G 290
Query: 134 GRIGIDEWLRVPSVQ-----DVFAVGDCSGYLESTGKTVLPALAQVAERQGK 180
++G +L V V ++A GDC+G L LA VA QG+
Sbjct: 291 IQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLP---------LASVAAMQGR 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,771,094
Number of Sequences: 62578
Number of extensions: 373785
Number of successful extensions: 1154
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1107
Number of HSP's gapped (non-prelim): 87
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)