Query 023375
Match_columns 283
No_of_seqs 305 out of 3249
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2495 NADH-dehydrogenase (ub 100.0 1.7E-54 3.7E-59 379.1 16.0 272 3-283 207-491 (491)
2 COG1252 Ndh NADH dehydrogenase 100.0 2.4E-51 5.1E-56 367.5 27.0 247 13-280 154-404 (405)
3 PTZ00318 NADH dehydrogenase-li 100.0 9.7E-48 2.1E-52 354.4 30.9 258 6-283 165-424 (424)
4 TIGR03169 Nterm_to_SelD pyridi 100.0 1.8E-32 3.9E-37 248.3 23.7 217 13-258 144-362 (364)
5 PRK13512 coenzyme A disulfide 99.9 2.2E-25 4.7E-30 206.7 18.4 161 13-188 147-311 (438)
6 PRK09754 phenylpropionate diox 99.9 5E-25 1.1E-29 201.8 19.6 182 13-222 143-333 (396)
7 COG1249 Lpd Pyruvate/2-oxoglut 99.9 7.4E-25 1.6E-29 201.2 20.3 180 12-223 171-361 (454)
8 TIGR03385 CoA_CoA_reduc CoA-di 99.9 1.9E-24 4E-29 200.0 17.7 161 13-188 136-303 (427)
9 PLN02507 glutathione reductase 99.9 7.2E-24 1.6E-28 199.1 20.3 151 13-187 202-361 (499)
10 TIGR01421 gluta_reduc_1 glutat 99.9 8.7E-24 1.9E-28 196.5 20.2 151 13-187 165-326 (450)
11 PRK09564 coenzyme A disulfide 99.9 4.2E-24 9.1E-29 198.5 17.7 161 13-188 148-316 (444)
12 TIGR01423 trypano_reduc trypan 99.9 5E-24 1.1E-28 199.2 18.2 154 13-187 186-349 (486)
13 PRK07846 mycothione reductase; 99.9 1.6E-23 3.5E-28 194.7 19.0 152 12-188 164-324 (451)
14 PRK07845 flavoprotein disulfid 99.9 2E-23 4.4E-28 194.9 18.7 152 13-188 176-336 (466)
15 TIGR01424 gluta_reduc_2 glutat 99.9 1.6E-23 3.4E-28 194.7 17.8 152 13-188 165-325 (446)
16 PRK07818 dihydrolipoamide dehy 99.9 2.5E-23 5.4E-28 194.4 17.7 152 13-188 171-335 (466)
17 PRK14989 nitrite reductase sub 99.9 2.8E-23 6.1E-28 204.6 18.7 156 13-188 144-309 (847)
18 PRK06116 glutathione reductase 99.9 4.4E-23 9.5E-28 192.0 18.0 152 13-188 166-327 (450)
19 PRK05249 soluble pyridine nucl 99.9 4.1E-23 8.9E-28 192.8 17.7 151 13-187 174-333 (461)
20 PRK06370 mercuric reductase; V 99.9 1.2E-22 2.6E-27 189.8 20.7 152 13-188 170-333 (463)
21 PRK14727 putative mercuric red 99.9 7.1E-23 1.5E-27 191.9 19.1 152 13-188 187-345 (479)
22 TIGR01438 TGR thioredoxin and 99.9 1.2E-22 2.6E-27 190.2 20.0 153 13-188 179-343 (484)
23 PRK04965 NADH:flavorubredoxin 99.9 9E-23 1.9E-27 185.8 18.5 155 12-188 139-301 (377)
24 PLN02546 glutathione reductase 99.9 6E-23 1.3E-27 194.3 17.9 153 12-188 250-412 (558)
25 PRK06416 dihydrolipoamide dehy 99.9 6.1E-23 1.3E-27 191.7 17.3 151 13-188 171-333 (462)
26 TIGR02053 MerA mercuric reduct 99.9 1.5E-22 3.3E-27 189.0 19.9 152 13-188 165-328 (463)
27 PRK06115 dihydrolipoamide dehy 99.9 1.7E-22 3.7E-27 188.6 19.0 151 13-188 173-337 (466)
28 TIGR03452 mycothione_red mycot 99.9 1.1E-22 2.3E-27 189.3 17.2 151 13-188 168-327 (452)
29 PTZ00052 thioredoxin reductase 99.9 3.4E-22 7.3E-27 187.9 20.4 152 13-188 181-340 (499)
30 PRK06467 dihydrolipoamide dehy 99.9 1.3E-22 2.8E-27 189.7 16.9 151 13-188 173-336 (471)
31 PRK13748 putative mercuric red 99.9 2.5E-22 5.4E-27 191.8 19.1 151 13-187 269-426 (561)
32 PRK06292 dihydrolipoamide dehy 99.9 3.7E-22 8.1E-27 186.3 19.5 152 12-188 167-330 (460)
33 TIGR01350 lipoamide_DH dihydro 99.9 5.2E-22 1.1E-26 185.4 20.2 152 13-188 169-331 (461)
34 PRK08010 pyridine nucleotide-d 99.9 3.3E-22 7.1E-27 185.7 17.9 152 12-187 156-315 (441)
35 PRK14694 putative mercuric red 99.9 1.3E-21 2.9E-26 182.8 20.4 150 13-187 177-333 (468)
36 PRK06327 dihydrolipoamide dehy 99.9 5.1E-22 1.1E-26 185.9 17.6 152 13-188 182-346 (475)
37 TIGR02374 nitri_red_nirB nitri 99.9 8.4E-22 1.8E-26 193.9 18.6 154 13-188 139-300 (785)
38 PTZ00058 glutathione reductase 99.9 7.9E-22 1.7E-26 186.7 17.6 159 14-188 237-431 (561)
39 PRK06912 acoL dihydrolipoamide 99.9 1.4E-21 3E-26 182.3 17.3 150 13-187 169-328 (458)
40 PTZ00153 lipoamide dehydrogena 99.9 2.6E-21 5.6E-26 185.6 17.1 152 13-188 311-494 (659)
41 PRK05976 dihydrolipoamide dehy 99.9 4.1E-21 8.9E-26 179.8 18.1 150 13-187 179-341 (472)
42 PRK07251 pyridine nucleotide-d 99.9 9.4E-21 2E-25 175.8 18.0 151 13-187 156-314 (438)
43 TIGR01292 TRX_reduct thioredox 99.9 1.2E-20 2.6E-25 165.9 15.8 149 12-189 139-299 (300)
44 PRK10262 thioredoxin reductase 99.8 3.1E-20 6.8E-25 165.5 14.8 155 12-191 144-315 (321)
45 TIGR01316 gltA glutamate synth 99.8 5.8E-20 1.3E-24 170.8 15.9 148 13-189 271-448 (449)
46 KOG1336 Monodehydroascorbate/f 99.8 5.2E-20 1.1E-24 165.1 14.3 162 13-190 212-384 (478)
47 TIGR03140 AhpF alkyl hydropero 99.8 4.8E-20 1E-24 174.2 13.6 150 13-191 351-513 (515)
48 PRK11749 dihydropyrimidine deh 99.8 2.9E-19 6.2E-24 166.7 17.2 151 13-191 272-452 (457)
49 PRK12770 putative glutamate sy 99.8 1.8E-19 4E-24 162.6 14.7 151 14-191 172-350 (352)
50 KOG0405 Pyridine nucleotide-di 99.8 6.3E-20 1.4E-24 158.0 10.4 153 12-188 187-349 (478)
51 PRK12831 putative oxidoreducta 99.8 1.4E-18 2.9E-23 162.1 17.1 151 12-191 279-461 (464)
52 PRK09853 putative selenate red 99.8 1.2E-18 2.5E-23 172.0 17.1 152 13-191 667-842 (1019)
53 PRK15317 alkyl hydroperoxide r 99.8 9.4E-19 2E-23 165.5 15.2 150 13-191 350-512 (517)
54 TIGR03315 Se_ygfK putative sel 99.8 3.7E-18 8E-23 169.1 18.8 183 12-222 664-872 (1012)
55 TIGR03143 AhpF_homolog putativ 99.8 2E-18 4.3E-23 164.5 16.1 153 12-192 141-310 (555)
56 KOG1335 Dihydrolipoamide dehyd 99.8 7E-19 1.5E-23 153.4 11.1 153 12-188 209-376 (506)
57 PRK12810 gltD glutamate syntha 99.8 1.5E-17 3.2E-22 155.7 17.5 155 13-191 280-465 (471)
58 PRK12778 putative bifunctional 99.8 1.1E-17 2.3E-22 164.7 16.3 150 13-191 569-750 (752)
59 PRK12814 putative NADPH-depend 99.8 2.3E-17 5E-22 159.7 17.6 152 12-191 321-501 (652)
60 COG0446 HcaD Uncharacterized N 99.8 1.8E-17 4E-22 151.8 16.0 162 14-189 136-310 (415)
61 COG0492 TrxB Thioredoxin reduc 99.8 3.2E-17 7E-22 144.0 15.9 152 11-191 140-301 (305)
62 COG1251 NirB NAD(P)H-nitrite r 99.7 6.7E-18 1.5E-22 158.2 10.7 158 11-190 142-307 (793)
63 TIGR01318 gltD_gamma_fam gluta 99.7 8.3E-17 1.8E-21 150.3 17.1 150 13-190 281-465 (467)
64 PRK12769 putative oxidoreducta 99.7 1.2E-16 2.5E-21 155.2 17.4 151 13-191 467-652 (654)
65 PRK13984 putative oxidoreducta 99.7 2.9E-16 6.3E-21 151.3 16.6 153 14-191 418-602 (604)
66 PRK12779 putative bifunctional 99.7 3.9E-16 8.5E-21 155.7 17.1 150 13-191 446-627 (944)
67 KOG4716 Thioredoxin reductase 99.7 9.9E-17 2.1E-21 138.0 8.3 156 12-190 196-366 (503)
68 TIGR01317 GOGAT_sm_gam glutama 99.7 1.3E-15 2.8E-20 142.9 16.3 156 13-191 282-479 (485)
69 PRK12809 putative oxidoreducta 99.7 2.5E-15 5.3E-20 145.5 16.9 151 13-191 450-635 (639)
70 KOG1346 Programmed cell death 99.7 2.2E-16 4.7E-21 139.2 7.3 166 13-190 346-520 (659)
71 PRK12775 putative trifunctiona 99.6 7E-15 1.5E-19 147.9 18.8 151 13-191 570-755 (1006)
72 PRK12771 putative glutamate sy 99.6 5.1E-15 1.1E-19 141.6 16.4 150 13-191 266-444 (564)
73 PF07992 Pyr_redox_2: Pyridine 99.6 2.7E-15 5.9E-20 124.4 6.5 129 16-159 1-199 (201)
74 PF00070 Pyr_redox: Pyridine n 99.5 2.2E-13 4.8E-18 96.3 9.8 74 16-103 1-80 (80)
75 COG3634 AhpF Alkyl hydroperoxi 99.5 2E-13 4.4E-18 118.2 9.9 153 2-184 343-508 (520)
76 TIGR01372 soxA sarcosine oxida 99.4 4.6E-12 1E-16 128.0 16.8 147 13-191 316-472 (985)
77 KOG3851 Sulfide:quinone oxidor 99.4 6.5E-13 1.4E-17 113.9 7.0 54 131-191 307-361 (446)
78 KOG0404 Thioredoxin reductase 99.3 5.7E-12 1.2E-16 103.2 9.8 152 11-190 154-318 (322)
79 PLN02852 ferredoxin-NADP+ redu 99.2 5.1E-10 1.1E-14 104.5 15.2 78 105-191 340-422 (491)
80 TIGR01292 TRX_reduct thioredox 99.1 7.6E-10 1.6E-14 97.2 12.3 91 16-120 2-113 (300)
81 PLN02172 flavin-containing mon 99.1 8E-10 1.7E-14 103.1 11.4 142 12-187 202-349 (461)
82 PRK09754 phenylpropionate diox 99.1 9.2E-10 2E-14 101.0 10.5 95 14-120 3-113 (396)
83 TIGR03169 Nterm_to_SelD pyridi 98.9 4.6E-09 1E-13 95.2 9.8 94 16-120 1-108 (364)
84 COG2081 Predicted flavoprotein 98.9 2.2E-08 4.7E-13 89.3 12.3 93 14-120 3-168 (408)
85 PRK05329 anaerobic glycerol-3- 98.9 2.9E-08 6.2E-13 91.4 13.0 157 18-189 219-419 (422)
86 PRK09564 coenzyme A disulfide 98.9 1.1E-08 2.3E-13 95.3 10.2 94 15-120 1-116 (444)
87 PTZ00318 NADH dehydrogenase-li 98.9 1.2E-08 2.5E-13 94.6 10.0 97 10-120 6-126 (424)
88 COG1252 Ndh NADH dehydrogenase 98.8 1.5E-08 3.2E-13 91.9 9.0 96 14-121 3-113 (405)
89 PF00743 FMO-like: Flavin-bind 98.8 3.6E-08 7.7E-13 93.4 11.7 89 89-187 301-393 (531)
90 TIGR01424 gluta_reduc_2 glutat 98.8 3.7E-08 8.1E-13 91.8 11.6 92 15-120 3-143 (446)
91 TIGR03140 AhpF alkyl hydropero 98.8 5.3E-08 1.2E-12 92.4 12.0 95 12-120 210-324 (515)
92 COG0493 GltD NADPH-dependent g 98.8 1.5E-08 3.2E-13 93.9 7.6 153 14-189 262-449 (457)
93 PRK13512 coenzyme A disulfide 98.8 3.8E-08 8.2E-13 91.6 10.2 94 15-120 2-118 (438)
94 PRK06116 glutathione reductase 98.8 4.7E-08 1E-12 91.3 10.6 91 15-120 5-144 (450)
95 KOG0399 Glutamate synthase [Am 98.8 7.3E-08 1.6E-12 94.6 12.0 77 104-190 2040-2119(2142)
96 TIGR02374 nitri_red_nirB nitri 98.8 4.3E-08 9.4E-13 97.3 10.9 93 17-120 1-109 (785)
97 PRK15317 alkyl hydroperoxide r 98.8 1E-07 2.2E-12 90.5 12.5 95 12-120 209-323 (517)
98 PRK04965 NADH:flavorubredoxin 98.7 6.8E-08 1.5E-12 88.1 10.7 93 15-120 3-112 (377)
99 PRK14989 nitrite reductase sub 98.7 8.7E-08 1.9E-12 95.5 12.1 96 15-120 4-114 (847)
100 PRK04176 ribulose-1,5-biphosph 98.7 5.7E-07 1.2E-11 77.7 15.6 158 15-191 26-255 (257)
101 PRK11749 dihydropyrimidine deh 98.7 4.1E-08 8.9E-13 91.8 8.0 88 12-118 138-236 (457)
102 PF13738 Pyr_redox_3: Pyridine 98.7 1.1E-07 2.4E-12 78.8 9.7 89 18-120 1-139 (203)
103 PRK07251 pyridine nucleotide-d 98.7 1.8E-07 3.8E-12 87.1 11.2 92 15-120 4-131 (438)
104 PRK09853 putative selenate red 98.7 2E-07 4.3E-12 93.3 11.7 89 12-120 537-636 (1019)
105 PF03486 HI0933_like: HI0933-l 98.6 2.2E-07 4.8E-12 85.3 10.9 92 16-121 2-168 (409)
106 PRK12779 putative bifunctional 98.6 9.9E-08 2.1E-12 96.0 9.2 90 13-120 305-406 (944)
107 PRK05976 dihydrolipoamide dehy 98.6 3.1E-07 6.7E-12 86.3 11.8 94 14-121 4-156 (472)
108 PRK10262 thioredoxin reductase 98.6 4.1E-07 9E-12 81.1 11.9 94 13-120 5-118 (321)
109 PLN02172 flavin-containing mon 98.6 7.3E-07 1.6E-11 83.3 13.8 95 12-120 8-176 (461)
110 TIGR00292 thiazole biosynthesi 98.6 3E-06 6.5E-11 73.0 16.2 158 14-190 21-253 (254)
111 PRK06847 hypothetical protein; 98.6 5.9E-07 1.3E-11 81.6 12.5 53 68-120 107-164 (375)
112 TIGR01421 gluta_reduc_1 glutat 98.6 3.6E-07 7.8E-12 85.3 11.3 91 15-120 3-142 (450)
113 PRK06416 dihydrolipoamide dehy 98.6 4.4E-07 9.5E-12 85.0 11.3 92 15-120 5-147 (462)
114 PLN02463 lycopene beta cyclase 98.6 4.8E-07 1E-11 84.1 11.4 102 4-120 19-170 (447)
115 COG0492 TrxB Thioredoxin reduc 98.6 2.6E-06 5.6E-11 75.2 15.1 93 14-121 3-117 (305)
116 TIGR03143 AhpF_homolog putativ 98.5 8.1E-07 1.8E-11 85.1 12.0 91 15-120 5-115 (555)
117 TIGR01316 gltA glutamate synth 98.5 2.2E-07 4.7E-12 86.8 7.9 91 12-120 131-232 (449)
118 PRK07845 flavoprotein disulfid 98.5 9.7E-07 2.1E-11 82.8 12.2 92 15-120 2-152 (466)
119 PRK05249 soluble pyridine nucl 98.5 1.2E-06 2.6E-11 82.0 12.5 92 15-120 6-150 (461)
120 PRK08010 pyridine nucleotide-d 98.5 7.6E-07 1.7E-11 82.9 11.1 92 15-120 4-132 (441)
121 PRK06370 mercuric reductase; V 98.5 1.2E-06 2.5E-11 82.2 12.1 91 15-120 6-146 (463)
122 PF01134 GIDA: Glucose inhibit 98.5 1.5E-06 3.2E-11 78.8 11.8 88 16-117 1-150 (392)
123 PRK06467 dihydrolipoamide dehy 98.5 1.5E-06 3.2E-11 81.7 11.9 92 15-120 5-149 (471)
124 PRK12831 putative oxidoreducta 98.5 3.5E-07 7.7E-12 85.6 7.7 91 12-120 138-242 (464)
125 PRK12778 putative bifunctional 98.5 3.9E-07 8.4E-12 90.3 8.3 92 12-120 429-531 (752)
126 TIGR02053 MerA mercuric reduct 98.5 1.1E-06 2.5E-11 82.3 10.9 91 16-120 2-141 (463)
127 TIGR03315 Se_ygfK putative sel 98.5 8.2E-07 1.8E-11 89.2 10.3 90 12-120 535-634 (1012)
128 PRK12770 putative glutamate sy 98.5 5.1E-07 1.1E-11 81.6 7.8 93 12-118 16-129 (352)
129 PLN02852 ferredoxin-NADP+ redu 98.4 4.7E-07 1E-11 84.8 7.4 93 11-120 23-127 (491)
130 PLN02546 glutathione reductase 98.4 2.2E-06 4.7E-11 81.9 12.0 91 15-120 80-229 (558)
131 TIGR01789 lycopene_cycl lycope 98.4 1.5E-06 3.2E-11 79.2 10.3 93 16-120 1-139 (370)
132 PRK07236 hypothetical protein; 98.4 1.6E-06 3.5E-11 79.3 10.4 94 13-120 5-155 (386)
133 COG1635 THI4 Ribulose 1,5-bisp 98.4 1E-05 2.2E-10 66.8 13.6 158 15-191 31-260 (262)
134 PRK12775 putative trifunctiona 98.4 7.2E-07 1.6E-11 90.6 8.2 91 13-120 429-531 (1006)
135 TIGR01350 lipoamide_DH dihydro 98.4 3.1E-06 6.7E-11 79.3 11.2 91 16-120 3-144 (461)
136 KOG2755 Oxidoreductase [Genera 98.4 2.2E-06 4.8E-11 72.3 8.9 54 105-159 268-322 (334)
137 KOG1336 Monodehydroascorbate/f 98.4 1.5E-06 3.3E-11 79.0 8.2 96 13-120 73-182 (478)
138 PRK06567 putative bifunctional 98.4 6E-06 1.3E-10 82.2 12.9 58 104-191 713-770 (1028)
139 TIGR01318 gltD_gamma_fam gluta 98.3 1.6E-06 3.4E-11 81.4 8.4 89 13-120 140-239 (467)
140 PF01266 DAO: FAD dependent ox 98.3 4E-06 8.6E-11 75.0 10.6 57 71-128 150-212 (358)
141 PRK06912 acoL dihydrolipoamide 98.3 4.6E-06 1E-10 78.1 11.3 91 16-120 2-145 (458)
142 PRK14694 putative mercuric red 98.3 5.3E-06 1.1E-10 77.9 11.7 94 13-120 5-153 (468)
143 COG2072 TrkA Predicted flavopr 98.3 2.1E-05 4.6E-10 73.2 15.4 130 13-158 7-186 (443)
144 PRK06834 hypothetical protein; 98.3 9.1E-06 2E-10 76.7 12.9 100 15-129 4-165 (488)
145 PRK08773 2-octaprenyl-3-methyl 98.3 1.1E-05 2.3E-10 73.9 13.1 60 69-129 114-178 (392)
146 TIGR02032 GG-red-SF geranylger 98.3 7E-06 1.5E-10 71.6 11.3 91 16-120 2-149 (295)
147 TIGR01317 GOGAT_sm_gam glutama 98.3 1.8E-06 3.8E-11 81.4 7.9 87 13-118 142-239 (485)
148 PRK06292 dihydrolipoamide dehy 98.3 8.1E-06 1.8E-10 76.4 11.6 91 15-120 4-144 (460)
149 PLN02697 lycopene epsilon cycl 98.3 1.1E-05 2.3E-10 76.5 12.1 94 13-120 107-249 (529)
150 PLN02661 Putative thiazole syn 98.3 3.9E-05 8.4E-10 68.7 14.8 160 14-191 92-328 (357)
151 PTZ00058 glutathione reductase 98.2 1.4E-05 3.1E-10 76.4 12.1 92 15-120 49-215 (561)
152 PRK12810 gltD glutamate syntha 98.2 3.4E-06 7.3E-11 79.3 7.6 89 12-119 141-240 (471)
153 PLN02507 glutathione reductase 98.2 1.6E-05 3.4E-10 75.3 12.1 92 15-120 26-180 (499)
154 PRK08163 salicylate hydroxylas 98.2 1.8E-05 4E-10 72.4 12.2 48 73-120 114-167 (396)
155 PRK07588 hypothetical protein; 98.2 1.8E-05 3.9E-10 72.5 12.0 40 81-120 115-159 (391)
156 PRK12814 putative NADPH-depend 98.2 4.1E-06 8.9E-11 81.7 8.1 90 13-120 192-291 (652)
157 PRK12809 putative oxidoreducta 98.2 4.5E-06 9.7E-11 81.3 8.2 89 13-120 309-408 (639)
158 PF00743 FMO-like: Flavin-bind 98.2 1.3E-05 2.9E-10 76.1 11.2 130 14-158 1-194 (531)
159 PRK07333 2-octaprenyl-6-methox 98.2 2.1E-05 4.6E-10 72.1 12.1 61 68-129 111-176 (403)
160 TIGR01790 carotene-cycl lycope 98.2 1.9E-05 4E-10 72.2 11.7 90 16-119 1-141 (388)
161 PRK06115 dihydrolipoamide dehy 98.2 1.4E-05 3.1E-10 75.0 11.1 92 15-121 4-150 (466)
162 PRK12769 putative oxidoreducta 98.2 4.9E-06 1.1E-10 81.3 8.2 90 12-120 325-425 (654)
163 COG3486 IucD Lysine/ornithine 98.2 8.7E-05 1.9E-09 66.7 15.1 156 13-182 186-407 (436)
164 PRK13748 putative mercuric red 98.2 1.9E-05 4.2E-10 75.8 11.6 92 15-120 99-245 (561)
165 COG0654 UbiH 2-polyprenyl-6-me 98.1 2.6E-05 5.5E-10 71.5 11.6 93 14-120 2-163 (387)
166 PRK05192 tRNA uridine 5-carbox 98.1 2.3E-05 5E-10 74.9 11.5 90 15-118 5-156 (618)
167 COG1148 HdrA Heterodisulfide r 98.1 1.3E-05 2.8E-10 73.2 9.3 134 41-191 394-545 (622)
168 PRK07608 ubiquinone biosynthes 98.1 3.3E-05 7.2E-10 70.5 12.2 50 70-120 113-168 (388)
169 PRK05714 2-octaprenyl-3-methyl 98.1 2.9E-05 6.3E-10 71.4 11.6 49 72-120 116-169 (405)
170 PRK08244 hypothetical protein; 98.1 3.4E-05 7.5E-10 72.9 12.1 92 15-120 3-160 (493)
171 PRK05868 hypothetical protein; 98.1 4.1E-05 8.9E-10 69.8 12.0 41 80-120 116-161 (372)
172 PRK07846 mycothione reductase; 98.1 2.5E-05 5.3E-10 73.1 10.7 43 78-120 99-141 (451)
173 PRK06184 hypothetical protein; 98.1 4.3E-05 9.2E-10 72.5 12.4 51 70-120 111-169 (502)
174 PTZ00188 adrenodoxin reductase 98.1 8.6E-06 1.9E-10 75.8 7.3 89 13-120 38-139 (506)
175 TIGR01372 soxA sarcosine oxida 98.1 2.5E-05 5.5E-10 79.6 11.3 95 13-121 162-288 (985)
176 PRK11728 hydroxyglutarate oxid 98.1 5.6E-05 1.2E-09 69.3 12.5 53 75-128 156-213 (393)
177 PRK06327 dihydrolipoamide dehy 98.1 3.8E-05 8.2E-10 72.3 11.6 92 15-120 5-158 (475)
178 PRK07818 dihydrolipoamide dehy 98.1 2.1E-05 4.6E-10 73.8 9.6 33 15-61 5-37 (466)
179 PRK06753 hypothetical protein; 98.1 3.9E-05 8.4E-10 69.7 11.0 39 82-120 110-153 (373)
180 PRK09126 hypothetical protein; 98.1 5.3E-05 1.1E-09 69.3 11.9 41 80-120 123-168 (392)
181 PRK06567 putative bifunctional 98.1 9E-06 2E-10 80.9 7.1 35 12-60 381-415 (1028)
182 PF01494 FAD_binding_3: FAD bi 98.0 4.4E-05 9.6E-10 68.2 11.0 91 16-120 3-173 (356)
183 TIGR01988 Ubi-OHases Ubiquinon 98.0 7.4E-05 1.6E-09 68.0 12.5 51 70-120 108-164 (385)
184 PTZ00052 thioredoxin reductase 98.0 4.6E-05 9.9E-10 72.2 11.4 92 15-120 6-157 (499)
185 PRK07190 hypothetical protein; 98.0 6E-05 1.3E-09 71.2 12.0 49 71-119 112-165 (487)
186 PRK01438 murD UDP-N-acetylmura 98.0 2.2E-05 4.7E-10 74.0 9.0 76 13-120 15-91 (480)
187 PRK07364 2-octaprenyl-6-methox 98.0 7.9E-05 1.7E-09 68.7 12.3 50 71-120 124-182 (415)
188 PRK08850 2-octaprenyl-6-methox 98.0 8.2E-05 1.8E-09 68.5 12.2 47 74-120 117-169 (405)
189 KOG0404 Thioredoxin reductase 98.0 4.3E-05 9.3E-10 63.3 9.0 92 15-120 9-125 (322)
190 PRK10157 putative oxidoreducta 98.0 7.7E-05 1.7E-09 69.3 11.8 49 71-119 111-164 (428)
191 PRK08020 ubiF 2-octaprenyl-3-m 98.0 9.2E-05 2E-09 67.7 12.2 51 70-120 114-170 (391)
192 PRK13984 putative oxidoreducta 98.0 2E-05 4.4E-10 76.3 8.2 89 12-119 281-380 (604)
193 PRK09897 hypothetical protein; 98.0 7.4E-05 1.6E-09 71.0 11.7 42 79-120 118-167 (534)
194 PF05834 Lycopene_cycl: Lycope 98.0 7.6E-05 1.7E-09 68.1 11.3 93 16-120 1-143 (374)
195 PRK08013 oxidoreductase; Provi 98.0 0.00012 2.6E-09 67.3 12.6 50 71-120 114-169 (400)
196 PRK07045 putative monooxygenas 98.0 0.0001 2.2E-09 67.5 12.0 51 70-120 108-166 (388)
197 COG0493 GltD NADPH-dependent g 98.0 1.1E-05 2.4E-10 75.0 5.5 90 12-120 121-221 (457)
198 COG0579 Predicted dehydrogenas 98.0 0.00011 2.5E-09 67.4 11.9 61 71-131 156-223 (429)
199 PF13434 K_oxygenase: L-lysine 98.0 2E-05 4.3E-10 70.9 6.9 96 11-118 187-340 (341)
200 TIGR01438 TGR thioredoxin and 98.0 8.3E-05 1.8E-09 70.2 11.3 92 15-120 3-156 (484)
201 PF13454 NAD_binding_9: FAD-NA 97.9 0.00011 2.5E-09 58.4 10.4 37 81-117 113-155 (156)
202 COG1249 Lpd Pyruvate/2-oxoglut 97.9 0.00016 3.5E-09 67.2 12.9 92 15-120 5-148 (454)
203 TIGR01423 trypano_reduc trypan 97.9 0.0001 2.2E-09 69.5 11.5 93 14-120 3-164 (486)
204 PRK06475 salicylate hydroxylas 97.9 0.00015 3.3E-09 66.6 12.3 51 70-120 109-168 (400)
205 TIGR00275 flavoprotein, HI0933 97.9 9.8E-05 2.1E-09 68.0 10.9 50 69-119 106-160 (400)
206 TIGR03364 HpnW_proposed FAD de 97.9 0.00017 3.8E-09 65.2 12.3 50 73-123 150-201 (365)
207 PRK12771 putative glutamate sy 97.9 3.1E-05 6.7E-10 74.5 7.7 89 12-120 135-235 (564)
208 PRK07494 2-octaprenyl-6-methox 97.9 0.00018 3.8E-09 65.8 12.4 50 70-120 113-168 (388)
209 PRK05732 2-octaprenyl-6-methox 97.9 0.00019 4E-09 65.7 12.5 55 73-128 117-177 (395)
210 PRK06996 hypothetical protein; 97.9 0.00024 5.3E-09 65.3 13.1 60 68-127 115-182 (398)
211 TIGR02023 BchP-ChlP geranylger 97.9 0.00012 2.6E-09 67.0 11.0 50 71-120 95-156 (388)
212 PRK06617 2-octaprenyl-6-methox 97.9 0.00017 3.8E-09 65.6 11.9 51 69-120 105-161 (374)
213 COG1251 NirB NAD(P)H-nitrite r 97.9 7.5E-05 1.6E-09 71.6 9.5 96 14-120 3-114 (793)
214 TIGR01984 UbiH 2-polyprenyl-6- 97.9 0.0002 4.3E-09 65.3 12.1 52 69-120 106-163 (382)
215 PRK06183 mhpA 3-(3-hydroxyphen 97.9 0.00019 4.2E-09 68.6 12.5 51 70-120 115-175 (538)
216 PRK08849 2-octaprenyl-3-methyl 97.9 9.8E-05 2.1E-09 67.5 10.0 40 81-120 124-168 (384)
217 KOG1399 Flavin-containing mono 97.9 0.00029 6.4E-09 65.3 12.9 130 14-157 6-196 (448)
218 PRK14727 putative mercuric red 97.8 0.00016 3.5E-09 68.1 11.4 94 13-120 15-163 (479)
219 TIGR00136 gidA glucose-inhibit 97.8 0.0002 4.3E-09 68.6 11.8 90 16-119 2-154 (617)
220 PRK11259 solA N-methyltryptoph 97.8 0.00036 7.8E-09 63.4 12.8 50 76-126 157-211 (376)
221 TIGR01377 soxA_mon sarcosine o 97.8 0.0003 6.6E-09 63.9 12.3 55 72-127 149-208 (380)
222 PRK06185 hypothetical protein; 97.8 0.00037 8E-09 64.1 12.7 59 70-129 110-178 (407)
223 TIGR03219 salicylate_mono sali 97.8 0.00022 4.7E-09 65.9 10.9 39 82-120 117-160 (414)
224 PRK10015 oxidoreductase; Provi 97.8 0.00029 6.4E-09 65.4 11.7 49 71-119 111-164 (429)
225 COG3634 AhpF Alkyl hydroperoxi 97.8 8.6E-05 1.9E-09 65.4 7.5 107 12-120 209-326 (520)
226 KOG2755 Oxidoreductase [Genera 97.8 5.7E-05 1.2E-09 64.0 6.1 92 16-121 1-106 (334)
227 TIGR03452 mycothione_red mycot 97.8 0.00016 3.5E-09 67.6 9.6 40 81-120 105-144 (452)
228 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 8.2E-05 1.8E-09 68.5 7.3 31 16-60 2-32 (433)
229 TIGR02028 ChlP geranylgeranyl 97.7 0.00046 1E-08 63.5 12.0 23 15-37 1-23 (398)
230 TIGR03378 glycerol3P_GlpB glyc 97.7 0.001 2.3E-08 61.1 14.1 130 54-186 248-418 (419)
231 PF04820 Trp_halogenase: Trypt 97.7 0.00036 7.7E-09 65.3 11.3 50 71-120 157-212 (454)
232 PRK08132 FAD-dependent oxidore 97.7 0.00048 1E-08 66.0 12.2 51 70-120 127-186 (547)
233 TIGR01989 COQ6 Ubiquinone bios 97.7 0.00054 1.2E-08 63.8 12.1 51 70-120 119-184 (437)
234 PRK08243 4-hydroxybenzoate 3-m 97.7 0.00074 1.6E-08 61.9 12.3 49 72-120 107-164 (392)
235 PRK12409 D-amino acid dehydrog 97.6 0.00082 1.8E-08 61.9 12.5 54 74-127 203-266 (410)
236 COG0644 FixC Dehydrogenases (f 97.6 0.00063 1.4E-08 62.5 11.6 91 15-119 4-152 (396)
237 TIGR03329 Phn_aa_oxid putative 97.6 0.0006 1.3E-08 63.9 11.6 46 75-121 190-239 (460)
238 PTZ00153 lipoamide dehydrogena 97.6 0.00049 1.1E-08 67.1 11.0 32 15-60 117-148 (659)
239 COG0445 GidA Flavin-dependent 97.6 0.00015 3.3E-09 67.4 6.7 90 15-118 5-157 (621)
240 KOG2495 NADH-dehydrogenase (ub 97.6 0.00033 7.1E-09 63.3 8.5 98 11-122 52-173 (491)
241 PLN00093 geranylgeranyl diphos 97.6 0.0011 2.4E-08 61.9 12.5 94 13-120 38-200 (450)
242 COG4529 Uncharacterized protei 97.6 0.002 4.3E-08 59.4 13.6 35 15-60 2-36 (474)
243 PRK07538 hypothetical protein; 97.6 0.00098 2.1E-08 61.5 11.9 23 15-37 1-23 (413)
244 PF12831 FAD_oxidored: FAD dep 97.6 7.4E-05 1.6E-09 69.4 4.4 99 16-130 1-159 (428)
245 TIGR02360 pbenz_hydroxyl 4-hyd 97.5 0.0013 2.7E-08 60.4 12.2 49 72-120 107-164 (390)
246 KOG2820 FAD-dependent oxidored 97.5 0.001 2.2E-08 58.6 10.6 54 71-124 156-217 (399)
247 PRK06126 hypothetical protein; 97.5 0.00093 2E-08 64.0 11.2 49 72-120 130-189 (545)
248 PRK11445 putative oxidoreducta 97.5 0.0019 4.2E-08 58.3 11.9 42 79-120 109-158 (351)
249 PF01946 Thi4: Thi4 family; PD 97.4 0.0027 5.8E-08 52.8 11.4 92 14-120 17-166 (230)
250 KOG2311 NAD/FAD-utilizing prot 97.4 0.00049 1.1E-08 63.1 7.5 23 15-37 29-51 (679)
251 PRK08255 salicylyl-CoA 5-hydro 97.4 0.00063 1.4E-08 67.8 8.9 34 15-60 1-34 (765)
252 PRK11101 glpA sn-glycerol-3-ph 97.4 0.0016 3.5E-08 62.4 11.2 50 78-127 159-219 (546)
253 PRK01747 mnmC bifunctional tRN 97.4 0.0018 3.9E-08 63.5 11.7 47 77-124 417-468 (662)
254 PLN02927 antheraxanthin epoxid 97.4 0.0014 3E-08 63.8 10.5 35 12-60 79-113 (668)
255 COG1148 HdrA Heterodisulfide r 97.4 0.00081 1.8E-08 61.8 8.3 71 12-96 122-207 (622)
256 PRK06481 fumarate reductase fl 97.4 0.002 4.4E-08 61.2 11.3 48 70-117 192-249 (506)
257 TIGR01373 soxB sarcosine oxida 97.3 0.0028 6.1E-08 58.3 11.9 52 75-127 190-248 (407)
258 PLN02985 squalene monooxygenas 97.3 0.0028 6.1E-08 60.3 11.6 26 12-37 41-66 (514)
259 COG0446 HcaD Uncharacterized N 97.3 0.0013 2.8E-08 60.1 8.6 91 17-121 1-108 (415)
260 COG2072 TrkA Predicted flavopr 97.3 0.0049 1.1E-07 57.6 12.4 37 10-60 171-207 (443)
261 PRK08401 L-aspartate oxidase; 97.2 0.0055 1.2E-07 57.6 12.5 50 70-120 122-176 (466)
262 PTZ00383 malate:quinone oxidor 97.2 0.0044 9.6E-08 58.6 11.6 61 69-130 212-284 (497)
263 PF13450 NAD_binding_8: NAD(P) 97.2 0.00073 1.6E-08 45.8 4.3 29 19-61 1-29 (68)
264 PRK08294 phenol 2-monooxygenas 97.1 0.0067 1.4E-07 59.2 12.1 51 70-120 143-211 (634)
265 KOG1335 Dihydrolipoamide dehyd 97.1 0.01 2.2E-07 53.3 12.0 124 14-154 39-218 (506)
266 KOG1346 Programmed cell death 97.1 0.00069 1.5E-08 61.1 4.4 103 13-127 177-321 (659)
267 COG3380 Predicted NAD/FAD-depe 97.0 0.002 4.3E-08 55.2 6.8 31 16-60 3-33 (331)
268 COG0029 NadB Aspartate oxidase 96.9 0.031 6.8E-07 51.9 14.0 51 134-189 342-396 (518)
269 KOG1399 Flavin-containing mono 96.8 0.0027 5.8E-08 59.0 6.4 90 11-127 183-278 (448)
270 KOG2415 Electron transfer flav 96.7 0.025 5.5E-07 51.4 11.4 100 13-120 75-257 (621)
271 KOG0029 Amine oxidase [Seconda 96.7 0.002 4.3E-08 60.9 4.5 37 12-62 13-50 (501)
272 PRK05335 tRNA (uracil-5-)-meth 96.7 0.002 4.2E-08 59.4 4.1 31 15-59 3-33 (436)
273 PRK14106 murD UDP-N-acetylmura 96.6 0.0096 2.1E-07 55.6 8.7 78 13-120 4-81 (450)
274 TIGR01813 flavo_cyto_c flavocy 96.6 0.028 6E-07 52.4 11.4 52 69-120 131-193 (439)
275 KOG0405 Pyridine nucleotide-di 96.6 0.024 5.1E-07 50.4 10.0 111 13-137 19-184 (478)
276 TIGR01812 sdhA_frdA_Gneg succi 96.6 0.026 5.7E-07 54.4 11.4 31 16-60 1-31 (566)
277 PRK06854 adenylylsulfate reduc 96.5 0.033 7.1E-07 54.2 11.9 33 14-60 11-45 (608)
278 PRK05945 sdhA succinate dehydr 96.5 0.031 6.7E-07 54.0 11.4 48 73-120 140-198 (575)
279 PRK07804 L-aspartate oxidase; 96.5 0.031 6.8E-07 53.6 11.3 24 14-37 16-39 (541)
280 KOG2852 Possible oxidoreductas 96.4 0.014 3.1E-07 50.5 7.6 41 13-62 9-50 (380)
281 TIGR00551 nadB L-aspartate oxi 96.4 0.039 8.4E-07 52.2 11.5 52 69-120 129-190 (488)
282 TIGR01470 cysG_Nterm siroheme 96.4 0.014 2.9E-07 48.7 7.1 73 13-118 8-80 (205)
283 PRK08275 putative oxidoreducta 96.4 0.051 1.1E-06 52.3 12.0 49 72-120 141-201 (554)
284 PRK06175 L-aspartate oxidase; 96.3 0.044 9.5E-07 51.1 11.0 51 69-119 129-189 (433)
285 KOG1800 Ferredoxin/adrenodoxin 96.3 0.016 3.4E-07 52.0 7.5 89 15-120 21-121 (468)
286 COG2509 Uncharacterized FAD-de 96.3 0.018 3.8E-07 52.9 8.0 59 67-125 172-236 (486)
287 KOG2614 Kynurenine 3-monooxyge 96.3 0.024 5.3E-07 51.3 8.7 33 14-60 2-34 (420)
288 PF06039 Mqo: Malate:quinone o 96.3 0.037 7.9E-07 51.2 10.0 56 74-129 187-254 (488)
289 TIGR03385 CoA_CoA_reduc CoA-di 96.3 0.014 3E-07 54.1 7.5 70 51-120 12-104 (427)
290 PRK11883 protoporphyrinogen ox 96.3 0.0048 1E-07 57.4 4.3 34 15-60 1-34 (451)
291 KOG1298 Squalene monooxygenase 96.2 0.0059 1.3E-07 54.8 4.4 34 13-60 44-77 (509)
292 PTZ00367 squalene epoxidase; P 96.2 0.0077 1.7E-07 57.9 5.5 34 14-61 33-66 (567)
293 PRK15116 sulfur acceptor prote 96.2 0.0045 9.8E-08 53.6 3.4 40 8-60 24-63 (268)
294 COG3349 Uncharacterized conser 96.1 0.0067 1.5E-07 56.4 4.4 34 15-62 1-34 (485)
295 PRK13369 glycerol-3-phosphate 96.0 0.014 3.1E-07 55.4 6.3 35 15-63 7-41 (502)
296 PRK00711 D-amino acid dehydrog 96.0 0.0084 1.8E-07 55.2 4.5 31 16-60 2-32 (416)
297 PLN02268 probable polyamine ox 96.0 0.0088 1.9E-07 55.6 4.6 32 15-60 1-32 (435)
298 PRK07233 hypothetical protein; 96.0 0.0077 1.7E-07 55.6 4.2 31 16-60 1-31 (434)
299 COG0665 DadA Glycine/D-amino a 96.0 0.0098 2.1E-07 54.1 4.7 35 13-61 3-37 (387)
300 PF02558 ApbA: Ketopantoate re 95.9 0.028 6.2E-07 44.0 6.7 77 17-120 1-80 (151)
301 COG1232 HemY Protoporphyrinoge 95.9 0.0089 1.9E-07 55.4 4.2 36 15-62 1-37 (444)
302 PRK07208 hypothetical protein; 95.9 0.0096 2.1E-07 56.0 4.5 33 14-60 4-36 (479)
303 KOG2853 Possible oxidoreductas 95.9 0.13 2.8E-06 45.8 10.9 37 14-60 86-122 (509)
304 COG4529 Uncharacterized protei 95.8 0.37 8E-06 44.8 14.1 44 5-60 187-230 (474)
305 TIGR00562 proto_IX_ox protopor 95.8 0.011 2.4E-07 55.3 4.4 36 15-60 3-38 (462)
306 PRK12266 glpD glycerol-3-phosp 95.8 0.011 2.4E-07 56.2 4.4 34 15-62 7-40 (508)
307 KOG4716 Thioredoxin reductase 95.7 0.17 3.8E-06 44.9 11.0 33 13-59 18-50 (503)
308 PRK12416 protoporphyrinogen ox 95.7 0.013 2.9E-07 54.8 4.6 40 15-62 2-42 (463)
309 COG1233 Phytoene dehydrogenase 95.7 0.013 2.9E-07 55.3 4.4 34 14-61 3-36 (487)
310 PLN02487 zeta-carotene desatur 95.6 0.014 3E-07 56.2 4.4 34 13-60 74-107 (569)
311 PLN02464 glycerol-3-phosphate 95.6 0.019 4.1E-07 56.0 5.3 34 15-62 72-105 (627)
312 KOG2665 Predicted FAD-dependen 95.5 0.08 1.7E-06 46.6 8.1 57 76-132 204-270 (453)
313 PLN02576 protoporphyrinogen ox 95.5 0.016 3.4E-07 54.8 4.3 32 15-60 13-45 (496)
314 PF13434 K_oxygenase: L-lysine 95.5 0.059 1.3E-06 48.5 7.7 93 15-120 3-160 (341)
315 PRK08205 sdhA succinate dehydr 95.4 0.2 4.3E-06 48.6 11.5 51 70-120 142-207 (583)
316 TIGR02733 desat_CrtD C-3',4' d 95.2 0.022 4.9E-07 53.8 4.3 32 15-60 2-33 (492)
317 PRK02705 murD UDP-N-acetylmura 95.2 0.059 1.3E-06 50.5 7.1 79 16-120 2-81 (459)
318 KOG1800 Ferredoxin/adrenodoxin 95.2 0.45 9.7E-06 43.0 12.0 78 104-191 327-407 (468)
319 TIGR02485 CobZ_N-term precorri 95.2 0.15 3.3E-06 47.4 9.7 50 70-119 125-183 (432)
320 KOG0685 Flavin-containing amin 95.2 0.033 7.1E-07 51.4 5.0 43 7-62 14-57 (498)
321 TIGR02734 crtI_fam phytoene de 95.2 0.02 4.4E-07 54.3 3.9 30 17-60 1-30 (502)
322 TIGR02731 phytoene_desat phyto 95.2 0.021 4.5E-07 53.4 3.9 31 16-60 1-31 (453)
323 KOG1276 Protoporphyrinogen oxi 95.2 0.027 5.8E-07 51.4 4.3 38 13-62 10-48 (491)
324 PRK05708 2-dehydropantoate 2-r 95.1 0.089 1.9E-06 46.6 7.5 33 14-60 2-34 (305)
325 PF13241 NAD_binding_7: Putati 95.1 0.026 5.7E-07 41.4 3.4 35 13-61 6-40 (103)
326 TIGR00031 UDP-GALP_mutase UDP- 95.0 0.03 6.5E-07 51.1 4.4 32 15-60 2-33 (377)
327 COG1206 Gid NAD(FAD)-utilizing 95.0 0.056 1.2E-06 47.8 5.8 32 15-60 4-35 (439)
328 PLN02529 lysine-specific histo 95.0 0.032 6.9E-07 55.2 4.8 35 12-60 158-192 (738)
329 PRK07121 hypothetical protein; 95.0 0.029 6.3E-07 53.1 4.4 34 13-60 19-52 (492)
330 PRK07843 3-ketosteroid-delta-1 95.0 0.042 9.2E-07 52.9 5.5 92 14-119 160-269 (557)
331 COG2907 Predicted NAD/FAD-bind 94.9 0.022 4.8E-07 50.6 3.0 34 14-62 8-42 (447)
332 PF02737 3HCDH_N: 3-hydroxyacy 94.7 0.028 6.1E-07 45.8 3.1 31 16-60 1-31 (180)
333 PF00732 GMC_oxred_N: GMC oxid 94.7 0.031 6.8E-07 48.9 3.7 34 16-62 2-35 (296)
334 PRK06719 precorrin-2 dehydroge 94.7 0.05 1.1E-06 43.3 4.5 32 13-58 12-43 (157)
335 PF00899 ThiF: ThiF family; I 94.6 0.06 1.3E-06 41.5 4.6 34 14-60 2-35 (135)
336 TIGR01320 mal_quin_oxido malat 94.6 0.038 8.2E-07 52.2 4.1 32 16-59 2-33 (483)
337 PRK12842 putative succinate de 94.6 0.041 9E-07 53.2 4.4 94 13-120 156-276 (574)
338 TIGR03862 flavo_PP4765 unchara 94.6 0.28 6E-06 44.8 9.4 64 57-120 72-142 (376)
339 PRK05257 malate:quinone oxidor 94.6 0.036 7.8E-07 52.5 3.9 34 15-60 6-39 (494)
340 PF00890 FAD_binding_2: FAD bi 94.5 0.046 9.9E-07 50.4 4.4 31 16-60 1-31 (417)
341 PRK08274 tricarballylate dehyd 94.5 0.045 9.8E-07 51.4 4.2 32 15-60 5-36 (466)
342 TIGR02732 zeta_caro_desat caro 94.5 0.04 8.7E-07 51.9 3.9 31 16-60 1-31 (474)
343 PRK06249 2-dehydropantoate 2-r 94.4 0.22 4.7E-06 44.2 8.2 78 15-120 6-85 (313)
344 COG1004 Ugd Predicted UDP-gluc 94.3 0.077 1.7E-06 48.1 5.1 58 15-86 1-67 (414)
345 COG1893 ApbA Ketopantoate redu 94.3 0.13 2.7E-06 45.7 6.5 78 15-120 1-80 (307)
346 PRK02472 murD UDP-N-acetylmura 94.3 0.17 3.7E-06 47.2 7.7 76 14-120 5-81 (447)
347 PLN02328 lysine-specific histo 94.3 0.063 1.4E-06 53.6 4.8 35 12-60 236-270 (808)
348 PF03721 UDPG_MGDP_dh_N: UDP-g 94.2 0.092 2E-06 43.0 5.1 75 15-117 1-86 (185)
349 TIGR02730 carot_isom carotene 94.0 0.059 1.3E-06 51.0 4.1 31 16-60 2-32 (493)
350 KOG2844 Dimethylglycine dehydr 94.0 0.44 9.5E-06 46.1 9.5 55 72-127 191-251 (856)
351 TIGR02352 thiamin_ThiO glycine 93.9 0.43 9.3E-06 42.3 9.3 80 40-122 110-196 (337)
352 COG0578 GlpA Glycerol-3-phosph 93.9 0.046 1E-06 51.7 3.1 36 13-62 11-46 (532)
353 PRK06718 precorrin-2 dehydroge 93.9 0.095 2.1E-06 43.5 4.6 74 13-119 9-82 (202)
354 PF01210 NAD_Gly3P_dh_N: NAD-d 93.8 0.096 2.1E-06 41.6 4.3 31 16-60 1-31 (157)
355 PRK04308 murD UDP-N-acetylmura 93.8 0.26 5.6E-06 46.0 7.8 77 14-123 5-84 (445)
356 PLN02676 polyamine oxidase 93.7 0.089 1.9E-06 49.8 4.6 34 13-60 25-59 (487)
357 PLN02612 phytoene desaturase 93.7 0.085 1.9E-06 50.9 4.5 34 13-60 92-125 (567)
358 COG1231 Monoamine oxidase [Ami 93.7 0.1 2.2E-06 48.0 4.7 37 12-62 5-42 (450)
359 PRK13339 malate:quinone oxidor 93.6 0.072 1.6E-06 50.4 3.8 34 14-59 6-39 (497)
360 PRK12843 putative FAD-binding 93.6 0.078 1.7E-06 51.3 4.1 45 2-60 4-48 (578)
361 PRK01710 murD UDP-N-acetylmura 93.6 0.26 5.6E-06 46.3 7.4 55 14-88 14-68 (458)
362 PRK00421 murC UDP-N-acetylmura 93.6 0.22 4.8E-06 46.7 7.0 72 13-120 6-79 (461)
363 PRK13977 myosin-cross-reactive 93.5 0.12 2.6E-06 49.5 5.0 37 14-60 22-58 (576)
364 PRK02106 choline dehydrogenase 93.5 0.082 1.8E-06 50.9 4.0 32 15-60 6-38 (560)
365 PRK12921 2-dehydropantoate 2-r 93.4 0.33 7.1E-06 42.7 7.5 78 15-119 1-80 (305)
366 PLN03000 amine oxidase 93.4 0.11 2.5E-06 52.0 4.9 34 13-60 183-216 (881)
367 PRK06854 adenylylsulfate reduc 93.3 0.13 2.7E-06 50.2 5.0 44 140-191 389-432 (608)
368 COG0562 Glf UDP-galactopyranos 93.3 0.15 3.3E-06 44.9 4.9 36 15-64 2-38 (374)
369 PRK07819 3-hydroxybutyryl-CoA 93.3 0.097 2.1E-06 45.9 3.8 36 14-63 5-41 (286)
370 PTZ00188 adrenodoxin reductase 93.3 1.9 4.1E-05 40.8 12.4 49 104-158 366-415 (506)
371 PLN02568 polyamine oxidase 93.2 0.12 2.7E-06 49.5 4.7 37 15-60 6-42 (539)
372 TIGR02354 thiF_fam2 thiamine b 93.2 0.13 2.7E-06 42.7 4.2 39 9-60 16-54 (200)
373 cd00757 ThiF_MoeB_HesA_family 93.2 0.12 2.6E-06 43.7 4.2 39 9-60 16-54 (228)
374 KOG2404 Fumarate reductase, fl 93.1 0.69 1.5E-05 41.0 8.6 23 15-37 10-32 (477)
375 TIGR02356 adenyl_thiF thiazole 93.0 0.14 3E-06 42.6 4.1 40 8-60 15-54 (202)
376 cd01485 E1-1_like Ubiquitin ac 93.0 0.29 6.2E-06 40.5 6.0 40 8-60 13-52 (198)
377 PRK12842 putative succinate de 92.9 0.11 2.5E-06 50.1 4.1 32 15-60 10-41 (574)
378 PRK00066 ldh L-lactate dehydro 92.9 0.16 3.5E-06 45.2 4.7 37 12-60 4-40 (315)
379 TIGR03197 MnmC_Cterm tRNA U-34 92.8 0.3 6.6E-06 44.5 6.6 56 68-124 135-195 (381)
380 PRK12837 3-ketosteroid-delta-1 92.7 0.12 2.6E-06 49.2 4.0 31 15-60 8-38 (513)
381 PRK12475 thiamine/molybdopteri 92.7 0.15 3.3E-06 45.8 4.3 42 7-61 17-58 (338)
382 cd01492 Aos1_SUMO Ubiquitin ac 92.5 0.18 4E-06 41.7 4.2 41 8-61 15-55 (197)
383 PRK08641 sdhA succinate dehydr 92.4 0.15 3.2E-06 49.6 4.1 32 15-60 4-35 (589)
384 TIGR02355 moeB molybdopterin s 92.4 0.19 4.2E-06 42.9 4.3 46 3-61 11-58 (240)
385 PRK08229 2-dehydropantoate 2-r 92.3 0.64 1.4E-05 41.7 7.8 79 15-119 3-85 (341)
386 PRK07688 thiamine/molybdopteri 92.2 0.2 4.3E-06 45.1 4.4 39 9-60 19-57 (339)
387 PRK07057 sdhA succinate dehydr 92.2 0.16 3.5E-06 49.3 4.0 32 15-60 13-44 (591)
388 PRK05690 molybdopterin biosynt 92.1 0.21 4.6E-06 42.8 4.3 39 9-60 27-65 (245)
389 PRK00141 murD UDP-N-acetylmura 92.1 0.57 1.2E-05 44.2 7.6 73 13-120 14-87 (473)
390 PRK07803 sdhA succinate dehydr 92.1 0.16 3.4E-06 49.7 3.9 32 15-60 9-40 (626)
391 COG0569 TrkA K+ transport syst 92.1 0.21 4.6E-06 42.2 4.2 32 15-60 1-32 (225)
392 PRK12834 putative FAD-binding 92.1 0.18 3.9E-06 48.5 4.2 32 15-60 5-36 (549)
393 PRK08328 hypothetical protein; 92.0 0.23 5E-06 42.2 4.3 41 7-60 20-60 (231)
394 PRK12835 3-ketosteroid-delta-1 92.0 0.19 4.1E-06 48.7 4.2 32 15-60 12-43 (584)
395 PRK08644 thiamine biosynthesis 91.9 0.23 5.1E-06 41.5 4.3 40 8-60 22-61 (212)
396 PRK09078 sdhA succinate dehydr 91.9 0.18 3.8E-06 49.1 3.9 32 15-60 13-44 (598)
397 TIGR01811 sdhA_Bsu succinate d 91.8 0.15 3.2E-06 49.7 3.3 30 17-60 1-30 (603)
398 PRK05562 precorrin-2 dehydroge 91.8 0.29 6.3E-06 41.2 4.6 73 13-118 24-96 (223)
399 PTZ00363 rab-GDP dissociation 91.7 0.22 4.7E-06 46.5 4.2 35 15-63 5-39 (443)
400 PRK05329 anaerobic glycerol-3- 91.7 0.21 4.4E-06 46.4 4.0 32 15-60 3-34 (422)
401 PRK06452 sdhA succinate dehydr 91.7 0.19 4.1E-06 48.6 3.9 32 15-60 6-37 (566)
402 TIGR01381 E1_like_apg7 E1-like 91.7 0.25 5.5E-06 47.8 4.6 45 2-60 327-371 (664)
403 TIGR01810 betA choline dehydro 91.6 0.18 3.9E-06 48.3 3.7 22 16-37 1-22 (532)
404 cd01491 Ube1_repeat1 Ubiquitin 91.6 0.45 9.9E-06 41.7 5.8 41 7-60 12-52 (286)
405 PRK08293 3-hydroxybutyryl-CoA 91.6 0.22 4.8E-06 43.6 4.0 32 15-60 4-35 (287)
406 PRK03369 murD UDP-N-acetylmura 91.5 0.76 1.6E-05 43.5 7.7 73 13-120 11-83 (488)
407 TIGR03736 PRTRC_ThiF PRTRC sys 91.4 0.43 9.4E-06 40.8 5.3 47 9-60 6-54 (244)
408 PRK08958 sdhA succinate dehydr 91.3 0.27 5.8E-06 47.8 4.5 32 15-60 8-39 (588)
409 PRK07843 3-ketosteroid-delta-1 91.3 0.23 4.9E-06 47.9 3.9 32 15-60 8-39 (557)
410 PRK12844 3-ketosteroid-delta-1 91.3 0.23 4.9E-06 47.9 3.9 32 15-60 7-38 (557)
411 PTZ00139 Succinate dehydrogena 91.2 0.23 4.9E-06 48.5 3.9 32 15-60 30-61 (617)
412 PRK07573 sdhA succinate dehydr 91.2 0.23 5.1E-06 48.6 4.0 31 15-59 36-66 (640)
413 PF01488 Shikimate_DH: Shikima 91.1 0.4 8.8E-06 36.9 4.6 77 13-120 11-88 (135)
414 TIGR02730 carot_isom carotene 91.1 0.78 1.7E-05 43.4 7.4 51 68-118 229-285 (493)
415 TIGR02462 pyranose_ox pyranose 91.1 0.27 5.8E-06 47.1 4.2 31 16-60 2-32 (544)
416 PRK08223 hypothetical protein; 91.0 0.35 7.5E-06 42.4 4.5 41 7-60 20-60 (287)
417 TIGR01320 mal_quin_oxido malat 91.0 0.69 1.5E-05 43.8 6.8 62 68-129 178-250 (483)
418 PLN02602 lactate dehydrogenase 90.9 0.47 1E-05 42.9 5.4 34 15-60 38-71 (350)
419 cd00755 YgdL_like Family of ac 90.9 0.36 7.7E-06 41.0 4.3 40 8-60 5-44 (231)
420 PLN00128 Succinate dehydrogena 90.9 0.25 5.5E-06 48.3 3.9 32 15-60 51-82 (635)
421 PRK08626 fumarate reductase fl 90.8 0.25 5.4E-06 48.6 3.8 32 15-60 6-37 (657)
422 COG2303 BetA Choline dehydroge 90.8 0.23 5E-06 47.7 3.5 33 14-60 7-39 (542)
423 TIGR02061 aprA adenosine phosp 90.7 0.28 6.2E-06 47.7 4.0 31 16-60 1-35 (614)
424 PRK06134 putative FAD-binding 90.7 0.3 6.6E-06 47.3 4.2 34 13-60 11-44 (581)
425 cd01483 E1_enzyme_family Super 90.7 0.44 9.6E-06 37.0 4.5 32 16-60 1-32 (143)
426 TIGR01759 MalateDH-SF1 malate 90.7 0.76 1.6E-05 41.1 6.4 42 12-60 1-43 (323)
427 PRK00711 D-amino acid dehydrog 90.6 0.91 2E-05 41.7 7.2 58 68-126 201-264 (416)
428 PRK04148 hypothetical protein; 90.5 0.38 8.2E-06 37.1 3.8 33 13-60 16-48 (134)
429 PRK07066 3-hydroxybutyryl-CoA 90.5 0.29 6.3E-06 43.7 3.7 33 14-60 7-39 (321)
430 PLN02612 phytoene desaturase 90.4 0.95 2E-05 43.8 7.3 50 68-117 308-364 (567)
431 PRK06263 sdhA succinate dehydr 90.2 0.26 5.6E-06 47.4 3.2 31 15-60 8-38 (543)
432 PLN02976 amine oxidase 90.2 0.34 7.4E-06 51.1 4.2 33 14-60 693-725 (1713)
433 PRK08275 putative oxidoreducta 90.1 0.44 9.6E-06 45.9 4.8 49 134-191 357-405 (554)
434 PLN02785 Protein HOTHEAD 90.0 0.32 7E-06 47.1 3.7 22 14-35 55-76 (587)
435 TIGR01082 murC UDP-N-acetylmur 89.9 0.92 2E-05 42.4 6.6 69 16-120 1-71 (448)
436 PRK09231 fumarate reductase fl 89.7 0.44 9.6E-06 46.2 4.5 33 16-60 6-38 (582)
437 PRK04690 murD UDP-N-acetylmura 89.6 1.3 2.9E-05 41.7 7.5 75 13-120 7-82 (468)
438 KOG3855 Monooxygenase involved 89.6 0.43 9.3E-06 43.6 3.9 37 14-60 36-72 (481)
439 PRK07411 hypothetical protein; 89.5 0.63 1.4E-05 42.8 5.1 45 3-60 25-71 (390)
440 PRK05600 thiamine biosynthesis 89.4 0.5 1.1E-05 43.1 4.3 39 9-60 36-74 (370)
441 COG0771 MurD UDP-N-acetylmuram 89.3 1.3 2.8E-05 41.3 7.0 75 14-120 7-82 (448)
442 cd01489 Uba2_SUMO Ubiquitin ac 89.3 0.55 1.2E-05 41.7 4.4 32 16-60 1-32 (312)
443 TIGR02734 crtI_fam phytoene de 89.3 1.3 2.9E-05 41.9 7.3 50 68-117 219-274 (502)
444 PF02254 TrkA_N: TrkA-N domain 89.2 0.76 1.7E-05 34.0 4.6 73 17-118 1-73 (116)
445 PRK05597 molybdopterin biosynt 89.2 0.54 1.2E-05 42.6 4.4 39 9-60 23-61 (355)
446 PRK13800 putative oxidoreducta 89.1 0.53 1.1E-05 48.1 4.6 49 134-191 362-410 (897)
447 PLN02735 carbamoyl-phosphate s 89.0 1.1 2.4E-05 46.8 6.9 45 2-60 11-66 (1102)
448 TIGR02437 FadB fatty oxidation 89.0 0.42 9.1E-06 47.5 3.8 35 12-60 311-345 (714)
449 PF01262 AlaDh_PNT_C: Alanine 88.9 0.82 1.8E-05 36.6 4.8 33 13-59 19-51 (168)
450 PRK09231 fumarate reductase fl 88.8 0.8 1.7E-05 44.4 5.5 57 133-191 358-415 (582)
451 TIGR01176 fum_red_Fp fumarate 88.7 0.5 1.1E-05 45.8 4.0 33 16-60 5-37 (580)
452 cd01484 E1-2_like Ubiquitin ac 88.7 0.63 1.4E-05 39.6 4.2 32 16-60 1-32 (234)
453 PRK09260 3-hydroxybutyryl-CoA 88.7 0.61 1.3E-05 40.8 4.3 32 15-60 2-33 (288)
454 PRK06129 3-hydroxyacyl-CoA deh 88.7 0.6 1.3E-05 41.4 4.2 32 15-60 3-34 (308)
455 COG0686 Ald Alanine dehydrogen 88.7 0.32 6.8E-06 42.8 2.3 32 15-60 169-200 (371)
456 PTZ00306 NADH-dependent fumara 88.6 0.49 1.1E-05 49.7 4.2 34 13-60 408-441 (1167)
457 PRK12839 hypothetical protein; 88.6 0.51 1.1E-05 45.7 4.0 33 14-60 8-40 (572)
458 COG0421 SpeE Spermidine syntha 88.6 0.62 1.3E-05 40.8 4.1 80 13-115 76-157 (282)
459 COG3573 Predicted oxidoreducta 88.6 0.57 1.2E-05 41.7 3.9 32 15-60 6-37 (552)
460 COG3075 GlpB Anaerobic glycero 88.6 0.59 1.3E-05 41.5 3.9 32 15-60 3-34 (421)
461 TIGR03378 glycerol3P_GlpB glyc 88.6 0.52 1.1E-05 43.6 3.8 31 16-60 2-32 (419)
462 PRK07395 L-aspartate oxidase; 88.6 0.43 9.2E-06 46.0 3.4 31 15-60 10-40 (553)
463 PRK13800 putative oxidoreducta 88.5 0.51 1.1E-05 48.2 4.1 32 15-60 14-45 (897)
464 PRK07878 molybdopterin biosynt 88.5 0.57 1.2E-05 43.1 4.0 39 9-60 37-75 (392)
465 cd05211 NAD_bind_Glu_Leu_Phe_V 88.5 1.9 4.2E-05 36.2 6.9 84 13-117 22-107 (217)
466 COG0169 AroE Shikimate 5-dehyd 88.5 2.7 5.8E-05 36.8 8.0 76 13-118 125-201 (283)
467 cd01487 E1_ThiF_like E1_ThiF_l 88.4 0.73 1.6E-05 37.3 4.2 32 16-60 1-32 (174)
468 PRK08071 L-aspartate oxidase; 88.4 0.45 9.8E-06 45.3 3.5 31 15-60 4-34 (510)
469 cd01490 Ube1_repeat2 Ubiquitin 88.4 0.64 1.4E-05 43.2 4.3 37 16-60 1-37 (435)
470 PRK12845 3-ketosteroid-delta-1 88.3 0.51 1.1E-05 45.6 3.8 32 14-60 16-47 (564)
471 PRK06153 hypothetical protein; 88.3 0.69 1.5E-05 42.1 4.3 164 9-192 171-364 (393)
472 PRK11730 fadB multifunctional 88.3 0.51 1.1E-05 46.9 3.8 35 12-60 311-345 (715)
473 PRK13339 malate:quinone oxidor 88.2 4.7 0.0001 38.3 10.1 62 68-129 184-257 (497)
474 PRK06069 sdhA succinate dehydr 88.1 0.56 1.2E-05 45.4 4.0 23 15-37 6-28 (577)
475 KOG1238 Glucose dehydrogenase/ 88.1 0.53 1.2E-05 45.3 3.7 38 10-60 53-90 (623)
476 cd01338 MDH_choloroplast_like 87.9 1.1 2.3E-05 40.1 5.3 41 13-60 1-42 (322)
477 PRK05442 malate dehydrogenase; 87.9 2 4.3E-05 38.5 7.0 42 12-60 2-44 (326)
478 KOG1495 Lactate dehydrogenase 87.6 1.8 4E-05 37.4 6.2 85 9-120 15-101 (332)
479 cd01488 Uba3_RUB Ubiquitin act 87.6 0.76 1.6E-05 40.4 4.1 32 16-60 1-32 (291)
480 COG2509 Uncharacterized FAD-de 87.5 0.63 1.4E-05 43.0 3.6 46 135-190 438-483 (486)
481 PRK06522 2-dehydropantoate 2-r 87.5 0.83 1.8E-05 40.1 4.4 31 16-60 2-32 (304)
482 PLN00112 malate dehydrogenase 87.4 1.1 2.3E-05 41.9 5.1 24 13-36 99-123 (444)
483 PRK00536 speE spermidine synth 87.3 1.1 2.5E-05 38.7 5.0 33 12-60 71-103 (262)
484 COG1053 SdhA Succinate dehydro 87.3 0.64 1.4E-05 44.8 3.8 33 14-60 6-38 (562)
485 PRK06035 3-hydroxyacyl-CoA deh 87.3 0.89 1.9E-05 39.9 4.4 33 14-60 3-35 (291)
486 cd05311 NAD_bind_2_malic_enz N 87.2 1.9 4E-05 36.5 6.1 38 13-61 24-61 (226)
487 cd01486 Apg7 Apg7 is an E1-lik 87.1 0.85 1.8E-05 40.2 4.1 32 16-60 1-32 (307)
488 TIGR02441 fa_ox_alpha_mit fatt 87.0 0.6 1.3E-05 46.6 3.5 35 12-60 333-367 (737)
489 KOG0042 Glycerol-3-phosphate d 87.0 0.35 7.5E-06 45.7 1.7 36 14-63 67-102 (680)
490 PRK07530 3-hydroxybutyryl-CoA 87.0 0.96 2.1E-05 39.7 4.5 33 14-60 4-36 (292)
491 KOG3923 D-aspartate oxidase [A 87.0 0.89 1.9E-05 39.8 4.0 39 14-59 3-41 (342)
492 PRK08762 molybdopterin biosynt 86.9 0.84 1.8E-05 41.7 4.1 39 9-60 130-168 (376)
493 PF13478 XdhC_C: XdhC Rossmann 86.7 1.4 3.1E-05 34.1 4.7 34 17-64 1-35 (136)
494 cd01080 NAD_bind_m-THF_DH_Cycl 86.6 1.3 2.8E-05 35.6 4.6 34 13-60 43-77 (168)
495 PRK09077 L-aspartate oxidase; 86.6 0.74 1.6E-05 44.2 3.8 30 16-60 10-39 (536)
496 KOG2304 3-hydroxyacyl-CoA dehy 86.5 0.6 1.3E-05 39.2 2.6 38 12-63 9-47 (298)
497 PLN02545 3-hydroxybutyryl-CoA 86.4 1.2 2.5E-05 39.2 4.7 33 14-60 4-36 (295)
498 PRK11154 fadJ multifunctional 86.3 0.77 1.7E-05 45.6 3.8 35 12-60 307-342 (708)
499 PRK06452 sdhA succinate dehydr 86.0 1.7 3.6E-05 42.1 5.9 58 133-191 346-404 (566)
500 PRK03803 murD UDP-N-acetylmura 86.0 2.4 5.1E-05 39.6 6.8 72 14-120 6-81 (448)
No 1
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=1.7e-54 Score=379.11 Aligned_cols=272 Identities=50% Similarity=0.849 Sum_probs=242.8
Q ss_pred CCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhC
Q 023375 3 LAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 81 (283)
Q Consensus 3 ~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~ 81 (283)
.|+..+|||++.+++|||||||+|+|+|+||+++...++.+-||+++++.+|||+|+. .+|+.|+..+.+++++.+.+.
T Consensus 207 ~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~ 286 (491)
T KOG2495|consen 207 LPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRD 286 (491)
T ss_pred cCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhc
Confidence 4788999999999999999999999999999999999999999999999999999998 799999999999999999999
Q ss_pred CCEEEeC-ceEEEeCCeEEEcCC----cEEEeeEEEEcCCCCCchhhhccCCCCCCCC--ccccCCCcccCCCCCEEEec
Q 023375 82 GVRLVRG-IVKDVDSQKLILNDG----TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG--RIGIDEWLRVPSVQDVFAVG 154 (283)
Q Consensus 82 gV~v~~~-~V~~v~~~~v~~~~g----~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g--~i~Vd~~l~~~~~~~VfaiG 154 (283)
||++.++ .|..|+++.+..+.+ ++|||.+++|+||..|.++...+....++.| ++.||++||+++.+||||+|
T Consensus 287 ~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiG 366 (491)
T KOG2495|consen 287 GIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIG 366 (491)
T ss_pred cceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEec
Confidence 9999999 799999998887654 6899999999999999999998877777777 79999999999999999999
Q ss_pred cccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCc-----CCCCCCCCceeeecccEEEecCcceeEec
Q 023375 155 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSA-----KDMELGDPFVYRHLGSMATIGRYKALVDL 229 (283)
Q Consensus 155 D~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~g~~~slG~~~av~~~ 229 (283)
||+.. ...+++||+|.|||.++|++++...+..+...... ......+||+|+++|++++||+++|++++
T Consensus 367 Dca~~------~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl 440 (491)
T KOG2495|consen 367 DCADQ------RGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADL 440 (491)
T ss_pred ccccc------ccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcC
Confidence 99954 34578999999999999999998876543311000 01111389999999999999999999998
Q ss_pred cccccCCCeeeecHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCCCCCC
Q 023375 230 RQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283 (283)
Q Consensus 230 ~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~~ 283 (283)
+. ...+...|..+|++|+++|+.++.|||+|+.|++||++.+|||||++++
T Consensus 441 ~~---g~~~~~~G~~s~~lWrS~Yls~~~S~R~R~lV~~dW~~~~~fGRd~s~i 491 (491)
T KOG2495|consen 441 PV---GKMWVSAGGSSFWLWRSAYLSKLVSWRNRFLVAIDWEKTFFFGRDSSSI 491 (491)
T ss_pred cc---CCeeeeccchhhHHHHHHHHHHhhhhhhheeeeeheeeeEEeccccccC
Confidence 63 1238999999999999999999999999999999999999999999875
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.4e-51 Score=367.53 Aligned_cols=247 Identities=39% Similarity=0.707 Sum_probs=227.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
+.++|+|||||++|+|+|++|+++.++.+.. |.....+.+|+|||++ ++||.+++++++++++.|+++||+++++ .|
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~V 232 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPV 232 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCce
Confidence 5679999999999999999999998765555 4444447899999998 9999999999999999999999999999 89
Q ss_pred EEEeCCeEEEcCCcE-EEeeEEEEcCCCCCchhhhc-cCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCC
Q 023375 91 KDVDSQKLILNDGTE-VPYGLLVWSTGVGPSTLVKS-LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL 168 (283)
Q Consensus 91 ~~v~~~~v~~~~g~~-i~~d~vi~a~G~~~~~~~~~-~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~ 168 (283)
++|++++|++++|++ |+++++|||+|.+++++.++ ++++.++.|++.||++||++++|+|||+|||+.++++ .|.
T Consensus 233 t~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~ 309 (405)
T COG1252 233 TEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP---RPV 309 (405)
T ss_pred EEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC---CCC
Confidence 999999999999984 99999999999999999999 4888888999999999999999999999999998765 588
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecccEEEecCcceeEeccccccCCCeeeecHHHHHH
Q 023375 169 PALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLV 248 (283)
Q Consensus 169 p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~slG~~~av~~~~~~~~~~~~~~~G~~a~~~ 248 (283)
|++||.|+|||+++|+||.+.++ |+ ++ +||+|+++|+|+|||.+.||+.+ .+..+.|+++|++
T Consensus 310 P~tAQ~A~Qqg~~~a~ni~~~l~---g~-------~l-~~f~y~~~Gtl~~lG~~~av~~~------g~~~l~G~~a~~~ 372 (405)
T COG1252 310 PPTAQAAHQQGEYAAKNIKARLK---GK-------PL-KPFKYKDKGTLASLGDFSAVADL------GGVKLKGFLAWLL 372 (405)
T ss_pred CChhHHHHHHHHHHHHHHHHHhc---CC-------CC-CCCcccceEEEEEccCCceeEEe------cceeeccHHHHHH
Confidence 99999999999999999999987 43 44 99999999999999999999987 4589999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhccCCCC
Q 023375 249 WRSAYLTRVVSWRNRFYVAVNWATTFVFGRDI 280 (283)
Q Consensus 249 ~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~ 280 (283)
|+.+|++++.+++++..+..+|.+.++++++.
T Consensus 373 k~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 404 (405)
T COG1252 373 KRAAYLYYLLGIRSRLAVALYWLTTYLTGRRS 404 (405)
T ss_pred HHHHHHheecccCcHHHHHHHHhhhhhccccc
Confidence 99999999999999999999999999998864
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=9.7e-48 Score=354.44 Aligned_cols=258 Identities=51% Similarity=0.875 Sum_probs=233.1
Q ss_pred CCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCE
Q 023375 6 ISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVR 84 (283)
Q Consensus 6 ~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~ 84 (283)
.+++++++.++|+|||||++|+|+|.+|+++.++...+.|++++++.+|+||+++ ++++.+++++++.+++.|+++||+
T Consensus 165 ~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~ 244 (424)
T PTZ00318 165 TSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVD 244 (424)
T ss_pred CChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 3444455667999999999999999999998776667778877778999999997 899999999999999999999999
Q ss_pred EEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375 85 LVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163 (283)
Q Consensus 85 v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~ 163 (283)
++++ +|++++++.|++++|+++++|++||++|.+|+++++.++++.+++|+|.||++||++++|||||+|||+.+++
T Consensus 245 v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~-- 322 (424)
T PTZ00318 245 IRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEE-- 322 (424)
T ss_pred EEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCC--
Confidence 9999 8999999999999999999999999999999998888999888889999999999879999999999998643
Q ss_pred CCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecccEEEecCcceeEeccccccCCCeeeecH
Q 023375 164 GKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGF 243 (283)
Q Consensus 164 ~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~slG~~~av~~~~~~~~~~~~~~~G~ 243 (283)
.+.|++++.|++||+++|+||.+.+. |+ +..+||.+...|.+++||+++|++++ .++.+.|+
T Consensus 323 --~~~~~~~~~A~~qg~~~A~ni~~~l~---g~-------~~~~~~~~~~~g~~~~lG~~~av~~~------~~~~~~g~ 384 (424)
T PTZ00318 323 --RPLPTLAQVASQQGVYLAKEFNNELK---GK-------PMSKPFVYRSLGSLAYLGNYSAIVQL------GAFDLSGF 384 (424)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHhc---CC-------CCCCCCeecCCceEEEecCCceEEEc------CCceEecH
Confidence 35689999999999999999999886 33 21289999999999999999999986 56899999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCCCCCC
Q 023375 244 LSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 283 (283)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~~ 283 (283)
++|++|+++|+.+++++++|++++++|++++||+|++.|.
T Consensus 385 ~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 424 (424)
T PTZ00318 385 KALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424 (424)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCccccC
Confidence 9999999999999999999999999999999999999863
No 4
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.8e-32 Score=248.32 Aligned_cols=217 Identities=26% Similarity=0.344 Sum_probs=184.7
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
..++|+|||||++|+|+|.+|++..++ .....+|+++....+++.+++.+...+++.|++.||+++++ +|+
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~--------~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 215 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPK--------RGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVT 215 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHh--------cCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeE
Confidence 346999999999999999999875421 01125899995557888899999999999999999999999 899
Q ss_pred EEeCCeEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcc
Q 023375 92 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPAL 171 (283)
Q Consensus 92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~ 171 (283)
+++++.+.+++|+++++|.+|||+|.+|++++..++++.+++|++.||+++|++++|+|||+|||+.+++ .+.|++
T Consensus 216 ~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~----~~~~~~ 291 (364)
T TIGR03169 216 RGPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD----APRPKA 291 (364)
T ss_pred EEcCCeEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCC----CCCCCc
Confidence 9988889999999999999999999999988888888888889999999999889999999999998643 346888
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCcee-eecccEEEecCcceeEeccccccCCCeeeecHHHHHHHH
Q 023375 172 AQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVY-RHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWR 250 (283)
Q Consensus 172 ~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~-~~~g~~~slG~~~av~~~~~~~~~~~~~~~G~~a~~~~~ 250 (283)
++.|++||+++|+||.+.+. |+ ++ ++|++ ...+.++|+|.++||++. .++.+.|+++|++|.
T Consensus 292 ~~~A~~~g~~~a~ni~~~l~---g~-------~~-~~~~~~~~~~~~~~~G~~~~v~~~------~~~~~~~~~~~~~k~ 354 (364)
T TIGR03169 292 GVYAVRQAPILAANLRASLR---GQ-------PL-RPFRPQRDYLQLLNTGDRRAVASW------GWIIGPGRWLWRLKD 354 (364)
T ss_pred hHHHHHhHHHHHHHHHHHhc---CC-------CC-CCCcccccceeEEEcCCCcEEEee------cceeecCccHHHHHH
Confidence 99999999999999998876 33 22 67765 456899999999999865 468999999999999
Q ss_pred HHHHHhcC
Q 023375 251 SAYLTRVV 258 (283)
Q Consensus 251 ~~~~~~~~ 258 (283)
.+...++.
T Consensus 355 ~~~~~~~~ 362 (364)
T TIGR03169 355 WIDRRFMR 362 (364)
T ss_pred HHhHHHHh
Confidence 88776653
No 5
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.94 E-value=2.2e-25 Score=206.65 Aligned_cols=161 Identities=18% Similarity=0.278 Sum_probs=142.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
..++++|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v 212 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEI 212 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeE
Confidence 4579999999999999999999877 899999997 7889999999999999999999999999 89
Q ss_pred EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC-CCCcCC
Q 023375 91 KDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-TGKTVL 168 (283)
Q Consensus 91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~-~~~~~~ 168 (283)
+++++..+++++|+++++|.|+|++|.+|+ +++++.+++++++|++.||+++|+ +.|+|||+|||+..... .+....
T Consensus 213 ~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~ 291 (438)
T PRK13512 213 DAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPAS 291 (438)
T ss_pred EEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCcee
Confidence 999988898888999999999999999998 578888888888899999999998 89999999999964322 111224
Q ss_pred CcchHHHHHHHHHHHHHHHH
Q 023375 169 PALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 169 p~~~~~A~~qg~~~a~~i~~ 188 (283)
++.++.|.+||+++|+||..
T Consensus 292 ~~la~~A~~~a~~~a~ni~g 311 (438)
T PRK13512 292 VPLAWGAHRAASIVAEQIAG 311 (438)
T ss_pred cccchHHHHHHHHHHHHhcC
Confidence 67889999999999999863
No 6
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.93 E-value=5e-25 Score=201.84 Aligned_cols=182 Identities=20% Similarity=0.290 Sum_probs=146.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++++|||||++|+|+|..|++++ .+|+++++. .+++. +++...+.+.+.+++.||+++++ +
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~ 208 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRR--------------CKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNA 208 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCe
Confidence 4689999999999999999999876 899999987 77764 68888999999999999999999 8
Q ss_pred eEEEeCC---eEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC
Q 023375 90 VKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK 165 (283)
Q Consensus 90 V~~v~~~---~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~ 165 (283)
|++++.+ .+.+.+|+++++|.||+++|.+|++ +.+.++++.+ +.+.||+++|+ +.|+|||+|||+..+++.+.
T Consensus 209 V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~--~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~ 285 (396)
T PRK09754 209 IEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTA--NGIVIDEACRT-CDPAIFAGGDVAITRLDNGA 285 (396)
T ss_pred eEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcC--CCEEECCCCcc-CCCCEEEccceEeeeCCCCC
Confidence 9998753 3567889999999999999999995 6667777653 56999999999 89999999999987665333
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecc--cEEEecC
Q 023375 166 TVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGR 222 (283)
Q Consensus 166 ~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~~~slG~ 222 (283)
...+++++.|.+||+++|+||..... +++. .||.+.+.. .+.++|.
T Consensus 286 ~~~~~~~~~A~~qg~~aa~ni~g~~~----------~~~~-~p~~~~~~~~~~~~~~G~ 333 (396)
T PRK09754 286 LHRCESWENANNQAQIAAAAMLGLPL----------PLLP-PPWFWSDQYSDNLQFIGD 333 (396)
T ss_pred EEEECcHHHHHHHHHHHHHHhcCCCC----------CCCC-CCceEEEeCCccEEEeeC
Confidence 33567899999999999999964221 1222 566666543 4566664
No 7
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.93 E-value=7.4e-25 Score=201.17 Aligned_cols=180 Identities=28% Similarity=0.395 Sum_probs=148.2
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
+-+++++|||||++|+|+|..++.++ .+||++++. ++||.+++++++.+.+.|++.|++++++ +
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG--------------~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~ 236 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALG--------------SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTK 236 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccce
Confidence 56789999999999999999999998 999999998 8999999999999999999999999999 7
Q ss_pred eEEEeCC----eEEEcCCc--EEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375 90 VKDVDSQ----KLILNDGT--EVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL 160 (283)
Q Consensus 90 V~~v~~~----~v~~~~g~--~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 160 (283)
+++++.+ .+.+++|+ ++.+|.+++|+|.+||. -+++.|++++++|+|.||+.+++ +.|+|||+|||+.-
T Consensus 237 v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~- 314 (454)
T COG1249 237 VTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGG- 314 (454)
T ss_pred EEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCC-
Confidence 8888654 36677776 78999999999999994 36788999999999999966666 89999999999841
Q ss_pred cCCCCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCCCceeeecccEEEecCc
Q 023375 161 ESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRY 223 (283)
Q Consensus 161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~slG~~ 223 (283)
|.+++.|..||+++|+||.. .. ... .++.. -|+.--....+.++|-.
T Consensus 315 --------~~Lah~A~~eg~iaa~~i~g-~~--~~~----~d~~~-iP~~ift~Peia~VGlt 361 (454)
T COG1249 315 --------PMLAHVAMAEGRIAAENIAG-GK--RTP----IDYRL-IPSVVFTDPEIASVGLT 361 (454)
T ss_pred --------cccHhHHHHHHHHHHHHHhC-CC--CCc----CcccC-CCEEEECCCcceeeeCC
Confidence 55999999999999999985 10 011 11122 45554444467777763
No 8
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.92 E-value=1.9e-24 Score=199.97 Aligned_cols=161 Identities=24% Similarity=0.374 Sum_probs=139.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-CCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-LSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|+|||||++|+|+|..|++.+ .+|+++++. .+ .+.+++++.+.+.+.|+++||+++.+ +
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~ 201 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--------------KNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEE 201 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCE
Confidence 4589999999999999999999876 899999987 56 47788999999999999999999999 8
Q ss_pred eEEEeCCe--EEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC-
Q 023375 90 VKDVDSQK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK- 165 (283)
Q Consensus 90 V~~v~~~~--v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~- 165 (283)
|++++++. +.+.+|+++++|.+||++|.+|+ +++++++++.+++|++.||+++|+ +.|+|||+|||+..+++..+
T Consensus 202 v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~ 280 (427)
T TIGR03385 202 VDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKK 280 (427)
T ss_pred EEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccCCC
Confidence 99998654 36778899999999999999999 678888998888899999999998 89999999999987554222
Q ss_pred cCCCcchHHHHHHHHHHHHHHHH
Q 023375 166 TVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 166 ~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
...+++++.|.+||+++|+||..
T Consensus 281 ~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 281 PAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred ceeeechHHHHHHHHHHHHHhcC
Confidence 23467899999999999999953
No 9
>PLN02507 glutathione reductase
Probab=99.92 E-value=7.2e-24 Score=199.11 Aligned_cols=151 Identities=24% Similarity=0.388 Sum_probs=134.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
..++|+|||||++|+|+|..++.++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus 202 ~~k~vvVIGgG~ig~E~A~~l~~~G--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V 267 (499)
T PLN02507 202 LPKRAVVLGGGYIAVEFASIWRGMG--------------ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNL 267 (499)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 4689999999999999999999887 899999987 7889999999999999999999999999 89
Q ss_pred EEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375 91 KDVDS--QK--LILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163 (283)
Q Consensus 91 ~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~ 163 (283)
++++. +. +.+.+|+++++|.|++++|.+|+. + +++++++++++|++.||+++|+ +.|+|||+|||+..
T Consensus 268 ~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~~---- 342 (499)
T PLN02507 268 TQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTNR---- 342 (499)
T ss_pred EEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCCC----
Confidence 99864 33 556678899999999999999995 3 4677888888899999999998 99999999999952
Q ss_pred CCcCCCcchHHHHHHHHHHHHHHH
Q 023375 164 GKTVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 164 ~~~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
+..++.|.+||+++|+||.
T Consensus 343 -----~~l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 343 -----INLTPVALMEGTCFAKTVF 361 (499)
T ss_pred -----CccHHHHHHHHHHHHHHHc
Confidence 5688999999999999985
No 10
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.92 E-value=8.7e-24 Score=196.46 Aligned_cols=151 Identities=26% Similarity=0.399 Sum_probs=134.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++++|||||++|+|+|..|+.++ .+|+++++. ++++.+++++++.+.+.|++.||+++++ +|
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~g--------------~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v 230 (450)
T TIGR01421 165 LPKRVVIVGAGYIAVELAGVLHGLG--------------SETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKP 230 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 3579999999999999999999887 899999987 7899999999999999999999999999 89
Q ss_pred EEEeCC-----eEEEcCC-cEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375 91 KDVDSQ-----KLILNDG-TEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 161 (283)
Q Consensus 91 ~~v~~~-----~v~~~~g-~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~ 161 (283)
++++.+ .+++++| +++++|.|+|++|.+|+.. ++.++++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus 231 ~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~-- 307 (450)
T TIGR01421 231 VKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGK-- 307 (450)
T ss_pred EEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCC--
Confidence 988642 3566677 5799999999999999952 4677888888999999999998 89999999999942
Q ss_pred CCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375 162 STGKTVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 162 ~~~~~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
+..++.|.+||+.+|+||.
T Consensus 308 -------~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 308 -------VELTPVAIAAGRKLSERLF 326 (450)
T ss_pred -------cccHHHHHHHHHHHHHHHh
Confidence 6678899999999999986
No 11
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.92 E-value=4.2e-24 Score=198.54 Aligned_cols=161 Identities=25% Similarity=0.418 Sum_probs=137.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|+|||||++|+|+|.+|.+.+ .+|+++++. ++++ .+++++.+.+.+.|++.||+++++ +
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~ 213 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLG--------------KNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEF 213 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCE
Confidence 4589999999999999999998876 899999987 6776 589999999999999999999999 8
Q ss_pred eEEEeCCe---EEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC-C
Q 023375 90 VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST-G 164 (283)
Q Consensus 90 V~~v~~~~---v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~-~ 164 (283)
|++++++. ....++.++++|.+++|+|.+|+ +++++++++.+++|++.||+++|+ +.|||||+|||+..+++. +
T Consensus 214 v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~ 292 (444)
T PRK09564 214 VKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSN 292 (444)
T ss_pred EEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCC
Confidence 99997542 22235567999999999999998 688888998888899999999998 899999999999865432 2
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHH
Q 023375 165 KTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 165 ~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
....+++++.|.+||+++|+||..
T Consensus 293 ~~~~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 293 KNVYVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred CeeeccchHHHHHHHHHHHHHhcC
Confidence 233578999999999999999864
No 12
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.92 E-value=5e-24 Score=199.24 Aligned_cols=154 Identities=26% Similarity=0.396 Sum_probs=134.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++++|||||++|+|+|..++.+.+ .+.+|+|+++. .+++.+++++++.+.+.|++.||+++++ .|
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~-----------~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v 254 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKP-----------RGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENP 254 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhcc-----------CCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 46899999999999999998876521 12899999987 7899999999999999999999999999 79
Q ss_pred EEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375 91 KDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 162 (283)
Q Consensus 91 ~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~ 162 (283)
++++.+ .+++.+++++++|.++|++|.+|+.. +++++++++++|+|.||+++|+ +.|+|||+|||+.
T Consensus 255 ~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~---- 329 (486)
T TIGR01423 255 AKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTD---- 329 (486)
T ss_pred EEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCCEEEeeecCC----
Confidence 998632 36667888999999999999999952 3567888888899999999998 9999999999984
Q ss_pred CCCcCCCcchHHHHHHHHHHHHHHH
Q 023375 163 TGKTVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 163 ~~~~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
.+..++.|.+||+++|+||.
T Consensus 330 -----~~~l~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 330 -----RVMLTPVAINEGAAFVDTVF 349 (486)
T ss_pred -----CcccHHHHHHHHHHHHHHHh
Confidence 26789999999999999986
No 13
>PRK07846 mycothione reductase; Reviewed
Probab=99.91 E-value=1.6e-23 Score=194.69 Aligned_cols=152 Identities=28% Similarity=0.385 Sum_probs=131.7
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..+++++|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.+ +.||+++++ +
T Consensus 164 ~~~~~vvIIGgG~iG~E~A~~l~~~G--------------~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~ 228 (451)
T PRK07846 164 ELPESLVIVGGGFIAAEFAHVFSALG--------------VRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRN 228 (451)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCE
Confidence 34689999999999999999999887 899999997 788999999988877655 568999999 8
Q ss_pred eEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375 90 VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 162 (283)
Q Consensus 90 V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~ 162 (283)
|++++.+ .+.+.+|+++++|.|++|+|.+|+. + .++.+++++++|++.||+++|+ +.|+|||+|||+..
T Consensus 229 v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~--- 304 (451)
T PRK07846 229 VVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSP--- 304 (451)
T ss_pred EEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCC---
Confidence 9998643 3556688899999999999999994 4 3567888888899999999998 99999999999952
Q ss_pred CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 163 TGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 163 ~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
+++++.|.+||+++|+||..
T Consensus 305 ------~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 305 ------YQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred ------ccChhHHHHHHHHHHHHHcC
Confidence 67889999999999999963
No 14
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.91 E-value=2e-23 Score=194.87 Aligned_cols=152 Identities=27% Similarity=0.441 Sum_probs=135.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++++|||||++|+|+|..|++++ .+|+++++. .+++.+++++...+.+.|+++||+++++ +|
T Consensus 176 ~~~~vvVIGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v 241 (466)
T PRK07845 176 LPEHLIVVGSGVTGAEFASAYTELG--------------VKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRA 241 (466)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEE
Confidence 3479999999999999999999887 899999987 8999999999999999999999999999 89
Q ss_pred EEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375 91 KDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163 (283)
Q Consensus 91 ~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~ 163 (283)
++++. +. +.+.+|+++++|.|++++|.+|+.. +++++++++++|++.||+++|+ +.|+|||+|||+..
T Consensus 242 ~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~---- 316 (466)
T PRK07845 242 ESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV---- 316 (466)
T ss_pred EEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC----
Confidence 99853 33 5567888999999999999999953 5778888888899999999999 99999999999952
Q ss_pred CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 164 GKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 164 ~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
+++++.|..||+++|.|+..
T Consensus 317 -----~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 317 -----LPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred -----ccchhHHHHHHHHHHHHHcC
Confidence 67899999999999999863
No 15
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.91 E-value=1.6e-23 Score=194.73 Aligned_cols=152 Identities=26% Similarity=0.437 Sum_probs=134.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
..++++|||||++|+|+|..++.++ .+|++++++ .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v 230 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLG--------------VQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSL 230 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 4679999999999999999999877 899999997 7889999999999999999999999999 89
Q ss_pred EEEeC--C--eEEEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375 91 KDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163 (283)
Q Consensus 91 ~~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~ 163 (283)
++++. + .+++.+++++++|.+|+|+|.+|+.. ++..+++++++|++.||+++|+ +.|+|||+|||+.
T Consensus 231 ~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~----- 304 (446)
T TIGR01424 231 TSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTD----- 304 (446)
T ss_pred EEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCC-----
Confidence 99864 3 35566788999999999999999942 4667888888899999999999 9999999999994
Q ss_pred CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 164 GKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 164 ~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
.+..++.|.+||+++|+||..
T Consensus 305 ----~~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 305 ----RINLTPVAIMEATCFANTEFG 325 (446)
T ss_pred ----CccchhHHHHHHHHHHHHHhc
Confidence 266889999999999999863
No 16
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.91 E-value=2.5e-23 Score=194.40 Aligned_cols=152 Identities=27% Similarity=0.452 Sum_probs=133.7
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++++|||||++|+|+|..|++++ .+|+++++. +++|.+++++++.+.+.|+++||+++++ +|
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v 236 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYG--------------VDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKV 236 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence 4579999999999999999999887 899999987 8999999999999999999999999999 89
Q ss_pred EEEeCC--e--EEEc--CC--cEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375 91 KDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159 (283)
Q Consensus 91 ~~v~~~--~--v~~~--~g--~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 159 (283)
++++++ . +.+. +| +++++|.|++++|.+|+.. +++.+++++++|++.||+++|+ +.|+|||+|||+.
T Consensus 237 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~- 314 (466)
T PRK07818 237 ESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTA- 314 (466)
T ss_pred EEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCC-
Confidence 999754 2 3443 56 4799999999999999952 5677888888899999999999 9999999999984
Q ss_pred CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 160 LESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
.+++++.|..||+++|+||..
T Consensus 315 --------~~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 315 --------KLQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred --------CcccHhHHHHHHHHHHHHHcC
Confidence 267899999999999999863
No 17
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.91 E-value=2.8e-23 Score=204.56 Aligned_cols=156 Identities=24% Similarity=0.405 Sum_probs=137.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++++|||||++|+|+|..|++++ .+|++++.. .+++ .+++..++.+.+.|+++||+++++ .
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G--------------~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~ 209 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLG--------------VETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKN 209 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCe
Confidence 5679999999999999999999887 899999997 6776 589999999999999999999999 7
Q ss_pred eEEEeCC------eEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375 90 VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 162 (283)
Q Consensus 90 V~~v~~~------~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~ 162 (283)
+++|.++ .+.+++|+++++|.||+++|.+|++ +.++++++++++|+|.||+++|+ +.|+|||+|||+.+.+
T Consensus 210 v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~- 287 (847)
T PRK14989 210 TLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQT-SDPDIYAIGECASWNN- 287 (847)
T ss_pred EEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcC-CCCCEEEeecceeEcC-
Confidence 9998642 4677899999999999999999995 66778999888999999999999 8999999999997632
Q ss_pred CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 163 TGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 163 ~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
.....+..|.+||+++|+||..
T Consensus 288 ----~~~gl~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 288 ----RVFGLVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred ----cccccHHHHHHHHHHHHHHhcC
Confidence 2345778899999999999863
No 18
>PRK06116 glutathione reductase; Validated
Probab=99.91 E-value=4.4e-23 Score=192.02 Aligned_cols=152 Identities=30% Similarity=0.456 Sum_probs=134.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
..++|+|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V 231 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLG--------------SETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVP 231 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEE
Confidence 4579999999999999999999877 899999987 7889999999999999999999999999 89
Q ss_pred EEEeC--C---eEEEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375 91 KDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 162 (283)
Q Consensus 91 ~~v~~--~---~v~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~ 162 (283)
++++. + .+.+.+|+++++|.||+|+|.+|+.. ++.++++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus 232 ~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--- 307 (450)
T PRK06116 232 KAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGR--- 307 (450)
T ss_pred EEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCC---
Confidence 99964 2 35667888999999999999999942 5667888888899999999998 99999999999841
Q ss_pred CCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 163 TGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 163 ~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
++.++.|.+||+.+|+||..
T Consensus 308 ------~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 308 ------VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred ------cCcHHHHHHHHHHHHHHHhC
Confidence 66789999999999999863
No 19
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.91 E-value=4.1e-23 Score=192.78 Aligned_cols=151 Identities=25% Similarity=0.423 Sum_probs=134.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++++|||||++|+|+|..|+.++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v 239 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALG--------------VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEV 239 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEE
Confidence 4689999999999999999999887 899999997 8999999999999999999999999999 89
Q ss_pred EEEe--CCe--EEEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375 91 KDVD--SQK--LILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163 (283)
Q Consensus 91 ~~v~--~~~--v~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~ 163 (283)
++++ ++. +++.+|+++++|.|++|+|.+|+.- +++++++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus 240 ~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~---- 314 (461)
T PRK05249 240 EKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF---- 314 (461)
T ss_pred EEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCC----
Confidence 8886 333 4556788999999999999999942 4667888888899999999998 89999999999842
Q ss_pred CCcCCCcchHHHHHHHHHHHHHHH
Q 023375 164 GKTVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 164 ~~~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
|+.++.|..||+++|.||.
T Consensus 315 -----~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 315 -----PSLASASMDQGRIAAQHAV 333 (461)
T ss_pred -----cccHhHHHHHHHHHHHHHc
Confidence 6789999999999999986
No 20
>PRK06370 mercuric reductase; Validated
Probab=99.90 E-value=1.2e-22 Score=189.76 Aligned_cols=152 Identities=24% Similarity=0.390 Sum_probs=132.7
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++|+|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V 235 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFG--------------SEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAEC 235 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 4689999999999999999999887 899999997 7889999999999999999999999999 89
Q ss_pred EEEeCC--e--EEEc---CCcEEEeeEEEEcCCCCCch--h-hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375 91 KDVDSQ--K--LILN---DGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL 160 (283)
Q Consensus 91 ~~v~~~--~--v~~~---~g~~i~~d~vi~a~G~~~~~--~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 160 (283)
.+++++ . +.+. +++++++|.||+|+|.+|+. + +++.+++++++|++.||+++|+ +.|+|||+|||+..
T Consensus 236 ~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~- 313 (463)
T PRK06370 236 IRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGR- 313 (463)
T ss_pred EEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCC-
Confidence 999753 2 3332 34579999999999999994 3 5667888888899999999999 99999999999852
Q ss_pred cCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 161 ESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
+..++.|..||+++|+||..
T Consensus 314 --------~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 314 --------GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred --------cccHHHHHHHHHHHHHHHhC
Confidence 66889999999999999864
No 21
>PRK14727 putative mercuric reductase; Provisional
Probab=99.90 E-value=7.1e-23 Score=191.87 Aligned_cols=152 Identities=21% Similarity=0.293 Sum_probs=131.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
.+++++|||||++|+|+|..|+.++ .+|+++++..+++.+++++.+.+.+.|++.||+++++ +|+
T Consensus 187 ~~k~vvVIGgG~iG~E~A~~l~~~G--------------~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~ 252 (479)
T PRK14727 187 LPASLTVIGSSVVAAEIAQAYARLG--------------SRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQAS 252 (479)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEE
Confidence 3589999999999999999999887 8999999888888899999999999999999999999 888
Q ss_pred EEeC--CeEEE-cCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC
Q 023375 92 DVDS--QKLIL-NDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK 165 (283)
Q Consensus 92 ~v~~--~~v~~-~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~ 165 (283)
+++. +.+.+ .++.++++|.+|+|+|..|+.. ++..+++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus 253 ~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~------ 325 (479)
T PRK14727 253 LVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDL------ 325 (479)
T ss_pred EEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCc------
Confidence 8863 33332 2334699999999999999953 4566888888899999999999 99999999999953
Q ss_pred cCCCcchHHHHHHHHHHHHHHHH
Q 023375 166 TVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 166 ~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
|..++.|..||+.+|.||..
T Consensus 326 ---~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 326 ---PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred ---chhhhHHHHHHHHHHHHHcC
Confidence 66788999999999999863
No 22
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.90 E-value=1.2e-22 Score=190.17 Aligned_cols=153 Identities=24% Similarity=0.325 Sum_probs=131.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
.+++++|||||++|+|+|..|++++ .+|+++++..+++.+++++++.+.+.|++.||+++++ .++
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~~G--------------~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~ 244 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAGIG--------------LDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPI 244 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhC--------------CcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEE
Confidence 4578999999999999999999887 8999999878889999999999999999999999999 777
Q ss_pred EEeC--C--eEEEcCC---cEEEeeEEEEcCCCCCch-h--hhccCCCCCC-CCccccCCCcccCCCCCEEEeccccccC
Q 023375 92 DVDS--Q--KLILNDG---TEVPYGLLVWSTGVGPST-L--VKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYL 160 (283)
Q Consensus 92 ~v~~--~--~v~~~~g---~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~-~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 160 (283)
+++. + .+++.++ +++++|.|+|++|.+|+. . +++.++++++ +|+|.||+++|+ +.|+|||+|||+..
T Consensus 245 ~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~~- 322 (484)
T TIGR01438 245 KVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILED- 322 (484)
T ss_pred EEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEEEecCC-
Confidence 7763 2 3555555 379999999999999995 2 4567777765 489999999998 89999999999952
Q ss_pred cCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 161 ESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
.+..++.|.+||+++|+||..
T Consensus 323 -------~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 323 -------KQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred -------CccchHHHHHHHHHHHHHHhc
Confidence 266789999999999999863
No 23
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.90 E-value=9e-23 Score=185.80 Aligned_cols=155 Identities=24% Similarity=0.393 Sum_probs=132.1
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CCHHHHHHHHHHHHhCCCEEEeC-
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG- 88 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~- 88 (283)
...++|+|||||++|+|+|..|++.+ .+|+++++. .+++. +++.+...+.+.|++.||+++.+
T Consensus 139 ~~~~~vvViGgG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~ 204 (377)
T PRK04965 139 RDAQRVLVVGGGLIGTELAMDLCRAG--------------KAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKS 204 (377)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECC
Confidence 35689999999999999999999876 899999987 67765 58889999999999999999998
Q ss_pred ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375 89 IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163 (283)
Q Consensus 89 ~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~ 163 (283)
+|++++.+ .+.+.+|+++++|.+|+|+|.+|+ .+.+.++++.+ +| +.||+++|+ +.|+|||+|||+.+..
T Consensus 205 ~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~l~t-s~~~VyA~GD~a~~~~-- 279 (377)
T PRK04965 205 QLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVN-RG-IVVDSYLQT-SAPDIYALGDCAEING-- 279 (377)
T ss_pred eEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcC-CC-EEECCCccc-CCCCEEEeeecEeECC--
Confidence 89999764 367788999999999999999998 46677888775 35 999999999 8999999999998632
Q ss_pred CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 164 GKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 164 ~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
.. .+..+.|.+||+++|+||..
T Consensus 280 --~~-~~~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 280 --QV-LPFLQPIQLSAMALAKNLLG 301 (377)
T ss_pred --ce-eehHHHHHHHHHHHHHHhcC
Confidence 12 23567799999999999864
No 24
>PLN02546 glutathione reductase
Probab=99.90 E-value=6e-23 Score=194.31 Aligned_cols=153 Identities=27% Similarity=0.429 Sum_probs=132.2
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
...++|+|||||++|+|+|..|+.++ .+|+++++. .+++.+++++++.+.+.|+++||+++++ +
T Consensus 250 ~~~k~V~VIGgG~iGvE~A~~L~~~g--------------~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~ 315 (558)
T PLN02546 250 SKPEKIAIVGGGYIALEFAGIFNGLK--------------SDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEES 315 (558)
T ss_pred ccCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCE
Confidence 35689999999999999999999877 899999987 7899999999999999999999999999 7
Q ss_pred eEEEeC---CeE--EEcCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375 90 VKDVDS---QKL--ILNDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 161 (283)
Q Consensus 90 V~~v~~---~~v--~~~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~ 161 (283)
+.+++. +.+ .+.+++...+|.|||++|.+|+.. +++++++++++|+|.||+++|+ +.|+|||+|||+..
T Consensus 316 v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~-- 392 (558)
T PLN02546 316 PQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDR-- 392 (558)
T ss_pred EEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCC--
Confidence 888863 223 334444456899999999999952 4778888888899999999998 99999999999952
Q ss_pred CCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 162 STGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
+..++.|..||+++|+||..
T Consensus 393 -------~~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 393 -------INLTPVALMEGGALAKTLFG 412 (558)
T ss_pred -------cccHHHHHHHHHHHHHHHcC
Confidence 66788999999999999863
No 25
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.90 E-value=6.1e-23 Score=191.69 Aligned_cols=151 Identities=30% Similarity=0.474 Sum_probs=132.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
..++++|||||++|+|+|..|++++ .+|+++++. .++|.+++++.+.+.+.|++.||+++++ +|
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V 236 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYASLG--------------AEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKA 236 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 4579999999999999999999876 899999997 8899999999999999999999999999 89
Q ss_pred EEEeCC--e--EEEcCC---cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375 91 KDVDSQ--K--LILNDG---TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL 160 (283)
Q Consensus 91 ~~v~~~--~--v~~~~g---~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 160 (283)
++++++ . +.+.++ +++++|.+|+|+|.+|+. + +++.+++.+ +|++.||+++|+ +.|+|||+|||+.
T Consensus 237 ~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~-- 312 (462)
T PRK06416 237 KKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVG-- 312 (462)
T ss_pred EEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCC--
Confidence 999754 3 344555 679999999999999994 3 356778777 799999999998 8999999999994
Q ss_pred cCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 161 ESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
.|++++.|.+||+++|+||..
T Consensus 313 -------~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 313 -------GPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred -------CcchHHHHHHHHHHHHHHHcC
Confidence 267899999999999999964
No 26
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.90 E-value=1.5e-22 Score=189.05 Aligned_cols=152 Identities=26% Similarity=0.350 Sum_probs=132.7
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
..++++|||||++|+|+|..|++++ .+|+++++. +++|.+++++...+.+.|++.||+++++ +|
T Consensus 165 ~~~~vvIIGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V 230 (463)
T TIGR02053 165 IPESLAVIGGGAIGVELAQAFARLG--------------SEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQV 230 (463)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEE
Confidence 3589999999999999999999887 899999997 8999999999999999999999999999 79
Q ss_pred EEEeCC----eEEEc---CCcEEEeeEEEEcCCCCCch--h-hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375 91 KDVDSQ----KLILN---DGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL 160 (283)
Q Consensus 91 ~~v~~~----~v~~~---~g~~i~~d~vi~a~G~~~~~--~-~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 160 (283)
++++.+ .+++. +++++++|.||+|+|.+|+. + ++..+++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus 231 ~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~- 308 (463)
T TIGR02053 231 KAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGG- 308 (463)
T ss_pred EEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCC-
Confidence 998653 23443 23679999999999999994 3 5667788888899999999999 99999999999952
Q ss_pred cCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 161 ESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
+.+++.|..||+++|.||..
T Consensus 309 --------~~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 309 --------LQLEYVAAKEGVVAAENALG 328 (463)
T ss_pred --------cccHhHHHHHHHHHHHHhcC
Confidence 67899999999999999863
No 27
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.90 E-value=1.7e-22 Score=188.65 Aligned_cols=151 Identities=23% Similarity=0.318 Sum_probs=129.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++++|||||++|+|+|..+++++ .+|+++++. +++|.+++++.+.+.+.|++.||+++++ +|
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G--------------~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V 238 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLG--------------AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKV 238 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEE
Confidence 4689999999999999999999887 899999987 8999999999999999999999999999 89
Q ss_pred EEEeCC--eE--EEc---C--CcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccc
Q 023375 91 KDVDSQ--KL--ILN---D--GTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 158 (283)
Q Consensus 91 ~~v~~~--~v--~~~---~--g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 158 (283)
++++++ .+ .+. + ++++++|.|++++|.+|+.- ++..+++.+++| +.||+++|+ +.|+|||+|||+.
T Consensus 239 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~ 316 (466)
T PRK06115 239 TGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTS 316 (466)
T ss_pred EEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCC
Confidence 999743 33 332 2 35799999999999999842 345567666666 678999998 9999999999995
Q ss_pred cCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 159 YLESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 159 ~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
. |++++.|.+||+++|+||..
T Consensus 317 ~---------~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 317 G---------PMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred C---------cccHHHHHHHHHHHHHHHcC
Confidence 2 67999999999999999863
No 28
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.90 E-value=1.1e-22 Score=189.32 Aligned_cols=151 Identities=28% Similarity=0.391 Sum_probs=130.5
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++++|||||++|+|+|..|+.++ .+|++|++. .+++.+++++.+.+.+.+ +.||+++++ +|
T Consensus 168 ~~k~vvVIGgG~ig~E~A~~l~~~G--------------~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V 232 (452)
T TIGR03452 168 LPESLVIVGGGYIAAEFAHVFSALG--------------TRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNV 232 (452)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCC--------------CcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEE
Confidence 4689999999999999999999887 899999997 788889999988887755 468999998 89
Q ss_pred EEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375 91 KDVDS--QK--LILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163 (283)
Q Consensus 91 ~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~ 163 (283)
++++. +. +++.+|+++++|.+++++|.+|+. + .+..+++++++|++.||+++|+ +.|+|||+|||+..
T Consensus 233 ~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~---- 307 (452)
T TIGR03452 233 TAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSP---- 307 (452)
T ss_pred EEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCc----
Confidence 99874 23 455678899999999999999995 3 3556888888899999999997 99999999999952
Q ss_pred CCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 164 GKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 164 ~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
++.++.|.+||+++|+||..
T Consensus 308 -----~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 308 -----YQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred -----ccChhHHHHHHHHHHHHhcC
Confidence 67889999999999999864
No 29
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.90 E-value=3.4e-22 Score=187.91 Aligned_cols=152 Identities=22% Similarity=0.350 Sum_probs=131.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
.+++++|||||++|+|+|..|+.++ .+|+++++..+++.+++++++.+.+.|++.||+++++ .++
T Consensus 181 ~~~~vvIIGgG~iG~E~A~~l~~~G--------------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~ 246 (499)
T PTZ00052 181 DPGKTLIVGASYIGLETAGFLNELG--------------FDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPI 246 (499)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEE
Confidence 4579999999999999999999887 8999999877789999999999999999999999999 787
Q ss_pred EEeC--C--eEEEcCCcEEEeeEEEEcCCCCCch-hh--hccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCC
Q 023375 92 DVDS--Q--KLILNDGTEVPYGLLVWSTGVGPST-LV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG 164 (283)
Q Consensus 92 ~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~~-~~--~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~ 164 (283)
+++. + .+.+.+|+++++|.|+|++|.+|+. ++ +.++++++++|++.+++. ++ +.|+|||+|||+.
T Consensus 247 ~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~------ 318 (499)
T PTZ00052 247 NIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE------ 318 (499)
T ss_pred EEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC------
Confidence 7753 2 3566788899999999999999994 33 567888888898777776 77 8999999999984
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHH
Q 023375 165 KTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 165 ~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
..|.+++.|.+||+++|+||..
T Consensus 319 --~~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 319 --GRPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred --CCcccHHHHHHHHHHHHHHHhC
Confidence 1367899999999999999963
No 30
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.90 E-value=1.3e-22 Score=189.70 Aligned_cols=151 Identities=20% Similarity=0.323 Sum_probs=131.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++++|||||++|+|+|..|++++ .+|++|++. +++|.+++++++.+.+.|++. |+++++ +|
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G--------------~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v 237 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLG--------------SEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKV 237 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEE
Confidence 4579999999999999999999887 899999997 899999999999999999998 999999 89
Q ss_pred EEEeC--Ce--EEEcC--C--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375 91 KDVDS--QK--LILND--G--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159 (283)
Q Consensus 91 ~~v~~--~~--v~~~~--g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 159 (283)
++++. +. +++.+ + +++++|.|||++|.+|+. .....+++++++|++.||+++|+ +.|+|||+|||+.
T Consensus 238 ~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~- 315 (471)
T PRK06467 238 TAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVG- 315 (471)
T ss_pred EEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcC-
Confidence 88863 33 34433 2 469999999999999994 24567888888999999999999 9999999999984
Q ss_pred CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 160 LESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
.|..++.|.+||+++|+||..
T Consensus 316 --------~~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 316 --------QPMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred --------CcccHHHHHHHHHHHHHHHcC
Confidence 267899999999999999863
No 31
>PRK13748 putative mercuric reductase; Provisional
Probab=99.90 E-value=2.5e-22 Score=191.83 Aligned_cols=151 Identities=21% Similarity=0.325 Sum_probs=131.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
.+++++|||||++|+|+|..|++++ .+|+++++..+++.+++++++.+.+.|++.||+++++ +|+
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~ 334 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARLG--------------SKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQAS 334 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 4589999999999999999999887 8999999888888899999999999999999999999 898
Q ss_pred EEeCC--eEEEc-CCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC
Q 023375 92 DVDSQ--KLILN-DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK 165 (283)
Q Consensus 92 ~v~~~--~v~~~-~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~ 165 (283)
+++.+ .+.+. ++.++++|.|++++|.+|+. + +++.+++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus 335 ~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~------ 407 (561)
T PRK13748 335 QVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQ------ 407 (561)
T ss_pred EEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCC------
Confidence 88643 33322 33479999999999999995 2 4667888888899999999999 99999999999952
Q ss_pred cCCCcchHHHHHHHHHHHHHHH
Q 023375 166 TVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 166 ~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
|..++.|..||+++|.||.
T Consensus 408 ---~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 408 ---PQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred ---ccchhHHHHHHHHHHHHHc
Confidence 6778899999999999985
No 32
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.89 E-value=3.7e-22 Score=186.28 Aligned_cols=152 Identities=27% Similarity=0.373 Sum_probs=132.3
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..+++++|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|+++ |+++++ +
T Consensus 167 ~~~k~v~VIGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~ 231 (460)
T PRK06292 167 KLPKSLAVIGGGVIGLELGQALSRLG--------------VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAK 231 (460)
T ss_pred ccCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCE
Confidence 35689999999999999999999887 899999997 789999999999999999999 999999 8
Q ss_pred eEEEeCC---eEEE--cCC--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375 90 VKDVDSQ---KLIL--NDG--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159 (283)
Q Consensus 90 V~~v~~~---~v~~--~~g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 159 (283)
|++++.+ .+++ .++ +++++|.+++++|.+|+. .++.++++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus 232 v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~ 310 (460)
T PRK06292 232 VTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGK 310 (460)
T ss_pred EEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCC
Confidence 9998643 3553 233 579999999999999994 24667888888899999999999 99999999999952
Q ss_pred CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 160 LESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
+++++.|..||+++|.||..
T Consensus 311 ---------~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 311 ---------PPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred ---------ccchhHHHHHHHHHHHHhcC
Confidence 66789999999999999964
No 33
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.89 E-value=5.2e-22 Score=185.38 Aligned_cols=152 Identities=28% Similarity=0.436 Sum_probs=133.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
..++|+|||||++|+|+|..|++.+ .+|+++++. .++|.+++++.+.+.+.|++.||+++++ +|
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v 234 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLG--------------SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKV 234 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 4589999999999999999999876 899999997 7899999999999999999999999999 89
Q ss_pred EEEeC--CeE--EEcCC--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375 91 KDVDS--QKL--ILNDG--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 161 (283)
Q Consensus 91 ~~v~~--~~v--~~~~g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~ 161 (283)
++++. +.+ .+.+| +++++|.+|+|+|.+|+. .+++++++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus 235 ~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~-- 311 (461)
T TIGR01350 235 TAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGG-- 311 (461)
T ss_pred EEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCCC--
Confidence 98863 344 34456 579999999999999994 36777888888899999999999 89999999999852
Q ss_pred CCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 162 STGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
+++++.|..||+.+|+||..
T Consensus 312 -------~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 312 -------PMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred -------cccHHHHHHHHHHHHHHHcC
Confidence 67899999999999999864
No 34
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.89 E-value=3.3e-22 Score=185.71 Aligned_cols=152 Identities=22% Similarity=0.362 Sum_probs=131.8
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
...++++|||||++|+|+|..|++++ .+|++++++ .++|.+++++.+.+.+.|++.||+++++ +
T Consensus 156 ~~~~~v~ViGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~ 221 (441)
T PRK08010 156 ELPGHLGILGGGYIGVEFASMFANFG--------------SKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAH 221 (441)
T ss_pred ccCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCE
Confidence 34579999999999999999999887 899999997 7899999999999999999999999999 8
Q ss_pred eEEEeCC--eEEEc-CCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCC
Q 023375 90 VKDVDSQ--KLILN-DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163 (283)
Q Consensus 90 V~~v~~~--~v~~~-~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~ 163 (283)
|++++.+ .+.+. ++.++++|.+++|+|.+|+. + .++++++++++|++.||+++|+ +.|+|||+|||+..
T Consensus 222 v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~---- 296 (441)
T PRK08010 222 VERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGG---- 296 (441)
T ss_pred EEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCC----
Confidence 9998743 34332 23469999999999999995 2 4567888888899999999999 89999999999952
Q ss_pred CCcCCCcchHHHHHHHHHHHHHHH
Q 023375 164 GKTVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 164 ~~~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
++.++.|..||+.+++||.
T Consensus 297 -----~~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 297 -----LQFTYISLDDYRIVRDELL 315 (441)
T ss_pred -----ccchhHHHHHHHHHHHHHc
Confidence 6788999999999999985
No 35
>PRK14694 putative mercuric reductase; Provisional
Probab=99.89 E-value=1.3e-21 Score=182.84 Aligned_cols=150 Identities=23% Similarity=0.383 Sum_probs=128.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
..++++|||||++|+|+|..|++++ .+|+++++.++++.+++++.+.+.+.|++.||+++++ +|+
T Consensus 177 ~~~~vvViG~G~~G~E~A~~l~~~g--------------~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~ 242 (468)
T PRK14694 177 IPERLLVIGASVVALELAQAFARLG--------------SRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQAS 242 (468)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence 4579999999999999999999887 8999999888889999999999999999999999999 898
Q ss_pred EEeCC--eEEE-cCCcEEEeeEEEEcCCCCCchh---hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCC
Q 023375 92 DVDSQ--KLIL-NDGTEVPYGLLVWSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK 165 (283)
Q Consensus 92 ~v~~~--~v~~-~~g~~i~~d~vi~a~G~~~~~~---~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~ 165 (283)
+++.+ .+.+ .++.++++|.||+++|.+|+.. +++++++. .+|++.||+++|+ +.|+|||+|||+..
T Consensus 243 ~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~------ 314 (468)
T PRK14694 243 EVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ------ 314 (468)
T ss_pred EEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC------
Confidence 88653 2322 2345799999999999999953 24567765 4789999999999 89999999999952
Q ss_pred cCCCcchHHHHHHHHHHHHHHH
Q 023375 166 TVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 166 ~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
|..++.|..||+++|.||.
T Consensus 315 ---~~~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 315 ---PQFVYVAAAGGSRAAINMT 333 (468)
T ss_pred ---cccHHHHHHHHHHHHHHhc
Confidence 6778899999999999985
No 36
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.89 E-value=5.1e-22 Score=185.93 Aligned_cols=152 Identities=25% Similarity=0.382 Sum_probs=132.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++|+|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v 247 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLG--------------AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKI 247 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEE
Confidence 4589999999999999999999887 899999997 7888899999999999999999999999 89
Q ss_pred EEEeCC--e--EEEcC--C--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375 91 KDVDSQ--K--LILND--G--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159 (283)
Q Consensus 91 ~~v~~~--~--v~~~~--g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 159 (283)
++++.+ . +.+.+ | +++++|.+++++|.+|+. ..+.++++++++|++.||+++|+ +.|+|||+|||+..
T Consensus 248 ~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~~ 326 (475)
T PRK06327 248 GEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVRG 326 (475)
T ss_pred EEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEEEeccCC
Confidence 999753 3 44444 3 479999999999999994 24567888888899999999998 89999999999852
Q ss_pred CcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 160 LESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
|+.++.|..||+.+|+||..
T Consensus 327 ---------~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 327 ---------PMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred ---------cchHHHHHHHHHHHHHHHcC
Confidence 67899999999999999863
No 37
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.88 E-value=8.4e-22 Score=193.94 Aligned_cols=154 Identities=21% Similarity=0.366 Sum_probs=132.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++++|||||++|+|+|..|++.+ .+|++++.. .+++ .+++.....+.+.|+++||+++++ .
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G--------------~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~ 204 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLG--------------MDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKD 204 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCc
Confidence 5689999999999999999999887 899999987 6765 489999999999999999999999 7
Q ss_pred eEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCC
Q 023375 90 VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG 164 (283)
Q Consensus 90 V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~ 164 (283)
++++.++ .|+++||+++++|+||+++|.+|++ +...++++.+ |.+.||+++|+ +.|+|||+|||+.+..
T Consensus 205 v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~~~~T-s~p~IyA~GD~a~~~~--- 278 (785)
T TIGR02374 205 TVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVNDSMQT-SDPDIYAVGECAEHNG--- 278 (785)
T ss_pred eEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECCCccc-CCCCEEEeeecceeCC---
Confidence 8888654 4778899999999999999999994 6667788765 66999999999 8999999999997632
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHH
Q 023375 165 KTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 165 ~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
.....+..|.+||+++|.||..
T Consensus 279 --~~~gl~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 279 --RVYGLVAPLYEQAKVLADHICG 300 (785)
T ss_pred --cccccHHHHHHHHHHHHHHhcC
Confidence 2234567789999999999963
No 38
>PTZ00058 glutathione reductase; Provisional
Probab=99.88 E-value=7.9e-22 Score=186.65 Aligned_cols=159 Identities=23% Similarity=0.417 Sum_probs=130.4
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
+++++|||||++|+|+|..|+.++ .+|+++++. ++++.+++++.+.+.+.|++.||+++++ .|.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G--------------~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~ 302 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLG--------------AESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVE 302 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--------------CcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 789999999999999999999887 899999997 7899999999999999999999999999 799
Q ss_pred EEeCC---e--EEEcCC-cEEEeeEEEEcCCCCCch-hh--hccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc-
Q 023375 92 DVDSQ---K--LILNDG-TEVPYGLLVWSTGVGPST-LV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE- 161 (283)
Q Consensus 92 ~v~~~---~--v~~~~g-~~i~~d~vi~a~G~~~~~-~~--~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~- 161 (283)
+++++ . +.+.++ +++++|.|++++|.+|+. .+ +..++. +++|+|.||+++|| +.|+|||+|||+....
T Consensus 303 ~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~~~ 380 (561)
T PTZ00058 303 EIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQRT-SVKHIYAVGDCCMVKKN 380 (561)
T ss_pred EEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCCcc-CCCCEEEeEeccCcccc
Confidence 98753 2 333344 579999999999999994 22 222332 45789999999998 9999999999997321
Q ss_pred -----------------------CCCCcC-CCcchHHHHHHHHHHHHHHHH
Q 023375 162 -----------------------STGKTV-LPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 162 -----------------------~~~~~~-~p~~~~~A~~qg~~~a~~i~~ 188 (283)
..+... .++.++.|..||+++|+||..
T Consensus 381 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 381 QEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred ccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 011111 378899999999999999963
No 39
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.88 E-value=1.4e-21 Score=182.30 Aligned_cols=150 Identities=27% Similarity=0.430 Sum_probs=128.5
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++++|||||++|+|+|..+.+++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g--------------~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V 234 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLG--------------TKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAAL 234 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEE
Confidence 3579999999999999999998876 899999997 8899999999999999999999999999 89
Q ss_pred EEEeCC--eEEEc-CC--cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375 91 KDVDSQ--KLILN-DG--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 162 (283)
Q Consensus 91 ~~v~~~--~v~~~-~g--~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~ 162 (283)
++++.+ .+.+. +| +++++|.|++|+|.+|+. . ++..+++.+++| +.||+++|+ +.|+|||+|||+.
T Consensus 235 ~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~---- 308 (458)
T PRK06912 235 KGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIG---- 308 (458)
T ss_pred EEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCC----
Confidence 998754 34443 34 369999999999999994 2 345567666666 999999998 8999999999984
Q ss_pred CCCcCCCcchHHHHHHHHHHHHHHH
Q 023375 163 TGKTVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 163 ~~~~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
.+++++.|.+||+++|.|+.
T Consensus 309 -----~~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 309 -----GIQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred -----CcccHHHHHHHHHHHHHHHc
Confidence 27789999999999999985
No 40
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.87 E-value=2.6e-21 Score=185.60 Aligned_cols=152 Identities=24% Similarity=0.357 Sum_probs=127.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHH-HhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l-~~~gV~v~~~-~ 89 (283)
.+++|+|||||++|+|+|..|+.++ .+|++|++. .++|.+++++.+.+.+.+ ++.||+++++ +
T Consensus 311 lpk~VvIVGgG~iGvE~A~~l~~~G--------------~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~ 376 (659)
T PTZ00153 311 LQNYMGIVGMGIIGLEFMDIYTALG--------------SEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTL 376 (659)
T ss_pred cCCceEEECCCHHHHHHHHHHHhCC--------------CeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCE
Confidence 3579999999999999999999887 899999997 899999999999999876 6799999999 8
Q ss_pred eEEEeCCe----EEE--cC-------C--------cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccC
Q 023375 90 VKDVDSQK----LIL--ND-------G--------TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVP 145 (283)
Q Consensus 90 V~~v~~~~----v~~--~~-------g--------~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~ 145 (283)
|++|+++. +.+ .+ + +++++|.|+||+|.+|+. . ++..+++.+ +|+|.||++||+.
T Consensus 377 V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs 455 (659)
T PTZ00153 377 IEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVL 455 (659)
T ss_pred EEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcC
Confidence 99997531 432 21 1 279999999999999994 2 355677665 4899999999994
Q ss_pred C-----CCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 146 S-----VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 146 ~-----~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
. .|+|||+|||+. .++.++.|..||+++|+||..
T Consensus 456 ~~~~~~v~~IYAiGDv~g---------~~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 456 REDQEVYDNIFCIGDANG---------KQMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred CCCCCCCCCEEEEEecCC---------CccCHHHHHHHHHHHHHHHcC
Confidence 2 699999999983 267899999999999999964
No 41
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.87 E-value=4.1e-21 Score=179.78 Aligned_cols=150 Identities=31% Similarity=0.479 Sum_probs=127.5
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
..++++|||||++|+|+|..|++++ .+|+++++. .++|.+++++.+.+.+.|++.||+++++ +|
T Consensus 179 ~~~~vvIIGgG~~G~E~A~~l~~~g--------------~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v 244 (472)
T PRK05976 179 LPKSLVIVGGGVIGLEWASMLADFG--------------VEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKV 244 (472)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEE
Confidence 3589999999999999999999876 899999987 8899999999999999999999999999 89
Q ss_pred EEEe---CCeE---EEcCC--cEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375 91 KDVD---SQKL---ILNDG--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159 (283)
Q Consensus 91 ~~v~---~~~v---~~~~g--~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 159 (283)
++++ .+.+ .+.+| +++++|.+|+|+|.+|+. . ++..++.. .+|++.||+++++ +.|+|||+|||+.
T Consensus 245 ~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiGD~~~- 321 (472)
T PRK05976 245 LGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIGDVIG- 321 (472)
T ss_pred EEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEeeecCC-
Confidence 9986 3433 23456 369999999999999984 2 23444544 4688999999998 7899999999984
Q ss_pred CcCCCCcCCCcchHHHHHHHHHHHHHHH
Q 023375 160 LESTGKTVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
.+++++.|.+||+++|+||.
T Consensus 322 --------~~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 322 --------EPQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred --------CcccHHHHHHHHHHHHHHHc
Confidence 16789999999999999985
No 42
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.86 E-value=9.4e-21 Score=175.82 Aligned_cols=151 Identities=24% Similarity=0.456 Sum_probs=130.0
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.+++|+|||||++|+|+|..|++.+ .+|+++++. .+++..++++.+.+.+.|++.||+++++ +|
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V 221 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLG--------------SKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHT 221 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 4679999999999999999999876 899999997 7889899999999999999999999999 89
Q ss_pred EEEeCC--eEE-EcCCcEEEeeEEEEcCCCCCch-h--hhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCC
Q 023375 91 KDVDSQ--KLI-LNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG 164 (283)
Q Consensus 91 ~~v~~~--~v~-~~~g~~i~~d~vi~a~G~~~~~-~--~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~ 164 (283)
++++.+ .+. ..+++++++|.+|+|+|.+|+. . +++.+++.+++|++.||+++|+ +.|+|||+|||+.
T Consensus 222 ~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~------ 294 (438)
T PRK07251 222 TEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNG------ 294 (438)
T ss_pred EEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCC------
Confidence 998754 333 3467789999999999999984 2 3345666677899999999999 8999999999984
Q ss_pred CcCCCcchHHHHHHHHHHHHHHH
Q 023375 165 KTVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 165 ~~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
.+..++.|..||++++.++.
T Consensus 295 ---~~~~~~~a~~~~~~~~~~~~ 314 (438)
T PRK07251 295 ---GPQFTYISLDDFRIVFGYLT 314 (438)
T ss_pred ---CcccHhHHHHHHHHHHHHHc
Confidence 26788999999999998875
No 43
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.86 E-value=1.2e-20 Score=165.93 Aligned_cols=149 Identities=27% Similarity=0.325 Sum_probs=121.2
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhC-CCEEEeC-c
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS-GVRLVRG-I 89 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~-gV~v~~~-~ 89 (283)
.+.++|+|||+|++|+|+|.+|++.+ .+|+++++...+. . ...+.+.+++. ||+++++ +
T Consensus 139 ~~~~~v~ViG~G~~~~e~a~~l~~~~--------------~~V~~v~~~~~~~-~----~~~~~~~l~~~~gv~~~~~~~ 199 (300)
T TIGR01292 139 FKNKEVAVVGGGDSAIEEALYLTRIA--------------KKVTLVHRRDKFR-A----EKILLDRLRKNPNIEFLWNST 199 (300)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhhc--------------CEEEEEEeCcccC-c----CHHHHHHHHhCCCeEEEeccE
Confidence 35679999999999999999998876 8999999873222 1 23455667777 9999998 8
Q ss_pred eEEEeCCe----EEEc---CC--cEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375 90 VKDVDSQK----LILN---DG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159 (283)
Q Consensus 90 V~~v~~~~----v~~~---~g--~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 159 (283)
+++++++. +++. ++ +++++|++|||+|.+|+. +++.+ ++.+++|++.||+++++ ++|+||++|||+..
T Consensus 200 v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t-~~~~vya~GD~~~~ 277 (300)
T TIGR01292 200 VKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRT-SVPGVFAAGDVRDK 277 (300)
T ss_pred EEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCcc-CCCCEEEeecccCc
Confidence 99997652 4443 23 579999999999999984 66666 66777899999999998 99999999999962
Q ss_pred CcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375 160 LESTGKTVLPALAQVAERQGKYLFSLLNRI 189 (283)
Q Consensus 160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~ 189 (283)
.++++..|+.||+.+|.+|.+.
T Consensus 278 --------~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 278 --------GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred --------chhhhhhhhhhHHHHHHHHHhh
Confidence 2678899999999999998764
No 44
>PRK10262 thioredoxin reductase; Provisional
Probab=99.84 E-value=3.1e-20 Score=165.53 Aligned_cols=155 Identities=22% Similarity=0.219 Sum_probs=125.6
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
...++|+|||+|++|+|+|..|++++ .+|+++++...++ .++.+.+.+.+.|++.||+++++ .+
T Consensus 144 ~~g~~vvVvGgG~~g~e~A~~l~~~~--------------~~Vtlv~~~~~~~-~~~~~~~~~~~~l~~~gV~i~~~~~v 208 (321)
T PRK10262 144 YRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKVENGNIILHTNRTL 208 (321)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEECCccC-CCHHHHHHHHhhccCCCeEEEeCCEE
Confidence 45789999999999999999999887 8999999874232 35667888889999999999998 89
Q ss_pred EEEeCC-----eEEEcCC------cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCC-----CcccCCCCCEEEec
Q 023375 91 KDVDSQ-----KLILNDG------TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDE-----WLRVPSVQDVFAVG 154 (283)
Q Consensus 91 ~~v~~~-----~v~~~~g------~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~-----~l~~~~~~~VfaiG 154 (283)
++++++ .|++.++ +++++|.|+|++|.+|+..+.+.++.. ++|++.||+ ++++ +.|+|||+|
T Consensus 209 ~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~G 286 (321)
T PRK10262 209 EEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQT-SIPGVFAAG 286 (321)
T ss_pred EEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccc-cCCEEEECCCCccccccc-CCCCEEECe
Confidence 999775 3565432 479999999999999996444445655 358899997 6677 999999999
Q ss_pred cccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 155 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 155 D~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
||+.. ..++...|+.+|..||..|...+.
T Consensus 287 D~~~~--------~~~~~~~A~~~g~~Aa~~~~~~l~ 315 (321)
T PRK10262 287 DVMDH--------IYRQAITSAGTGCMAALDAERYLD 315 (321)
T ss_pred eccCC--------CcceEEEEehhHHHHHHHHHHHHH
Confidence 99952 145555699999999999998885
No 45
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.84 E-value=5.8e-20 Score=170.81 Aligned_cols=148 Identities=22% Similarity=0.209 Sum_probs=118.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|+|||||.+|+|+|..+.+++ .+|+++++. . -++.. ....+.+++.||+++++ .
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G--------------~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~ 331 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLG--------------AEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQ 331 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccC
Confidence 4589999999999999999999887 789999986 3 23322 22335678899999988 7
Q ss_pred eEEEeCC------eEEEc---------CC-----------cEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCc
Q 023375 90 VKDVDSQ------KLILN---------DG-----------TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWL 142 (283)
Q Consensus 90 V~~v~~~------~v~~~---------~g-----------~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l 142 (283)
++++..+ .|++. +| +++++|+||+++|..|+. +++.++++++++|++.||+++
T Consensus 332 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~ 411 (449)
T TIGR01316 332 PVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQ 411 (449)
T ss_pred cEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCC
Confidence 7777532 23332 22 269999999999999994 566678888888999999999
Q ss_pred ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375 143 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 189 (283)
Q Consensus 143 ~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~ 189 (283)
+| +.|+|||+|||+.- +.++..|+.||+.+|.+|.+.
T Consensus 412 ~T-s~~~VfA~GD~~~g---------~~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 412 RT-SIPGVFAGGDIILG---------AATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred cc-CCCCEEEecCCCCC---------cHHHHHHHHHHHHHHHHHHhh
Confidence 98 89999999999851 668899999999999999765
No 46
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.83 E-value=5.2e-20 Score=165.07 Aligned_cols=162 Identities=22% Similarity=0.356 Sum_probs=137.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
...+|+++|||+.|+|+|.+|.... .+||+|++. ..++ -+.+.+.+.++++++++||+++++ .
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~~~--------------~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~ 277 (478)
T KOG1336|consen 212 LGGKVVCVGGGFIGMEVAAALVSKA--------------KSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTV 277 (478)
T ss_pred cCceEEEECchHHHHHHHHHHHhcC--------------ceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecc
Confidence 4578999999999999999999775 999999997 6776 578999999999999999999999 6
Q ss_pred eEEEeCC------eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375 90 VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 162 (283)
Q Consensus 90 V~~v~~~------~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~ 162 (283)
+++++.+ .|.+.||+++++|+||..+|.+|+ ++.+. +.-.+++|.|.||+.+|+ +.|||||+||+++++-+
T Consensus 278 ~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~ 355 (478)
T KOG1336|consen 278 VSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLK 355 (478)
T ss_pred eeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-cceecccCCEeehhceee-ccCCcccccceeecccc
Confidence 8888765 478899999999999999999999 45555 666788999999999999 79999999999998755
Q ss_pred CC-CcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375 163 TG-KTVLPALAQVAERQGKYLFSLLNRIG 190 (283)
Q Consensus 163 ~~-~~~~p~~~~~A~~qg~~~a~~i~~~~ 190 (283)
-. ....-..++.|..+|+.+...|+...
T Consensus 356 ~~~~~~~v~H~~~A~~~g~~av~ai~~~~ 384 (478)
T KOG1336|consen 356 GYGEDRRVEHVDHARASGRQAVKAIKMAP 384 (478)
T ss_pred cccccccchHHHHHHHHHHhhhhhhhccC
Confidence 22 12236788889999998887776543
No 47
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.83 E-value=4.8e-20 Score=174.15 Aligned_cols=150 Identities=22% Similarity=0.282 Sum_probs=120.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHh-CCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK-SGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~-~gV~v~~~-~V 90 (283)
..++|+|||||++|+|+|..|+..+ .+|++++..+.+. ....+.+.+++ .||+++++ .+
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~l~-----~~~~l~~~l~~~~gV~i~~~~~v 411 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIV--------------RHVTVLEFADELK-----ADKVLQDKLKSLPNVDILTSAQT 411 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC--------------cEEEEEEeCCcCC-----hhHHHHHHHhcCCCCEEEECCee
Confidence 4689999999999999999999876 8999999863221 12445666766 59999999 89
Q ss_pred EEEeCC-----eEEEcC---C--cEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375 91 KDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159 (283)
Q Consensus 91 ~~v~~~-----~v~~~~---g--~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 159 (283)
+++.++ .|++.+ + +++++|.|++++|.+|+ ++++.. ++.+++|++.||+++|+ +.|+|||+|||+..
T Consensus 412 ~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~ 489 (515)
T TIGR03140 412 TEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRT-SVPGIFAAGDVTTV 489 (515)
T ss_pred EEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCC-CCCCEEEcccccCC
Confidence 998765 366543 2 46999999999999999 466655 77778899999999999 99999999999963
Q ss_pred CcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 160 LESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+ .+++..|+.+|..+|.++...+.
T Consensus 490 ~--------~~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 490 P--------YKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred c--------cceEEEEEccHHHHHHHHHHHHh
Confidence 1 34566899999999999987763
No 48
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.82 E-value=2.9e-19 Score=166.68 Aligned_cols=151 Identities=20% Similarity=0.205 Sum_probs=121.1
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|+|||||.+|+|+|..|.+++. .+|+++++. ..++.... ..+.+++.||+++++ .
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~-------------~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~ 333 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGA-------------ESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAA 333 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCC
Confidence 56899999999999999999988761 389999985 24554322 345678899999998 7
Q ss_pred eEEEeCCe-----EEEc-------------------CCcEEEeeEEEEcCCCCCch-hhh-ccCCCCCCCCccccCC-Cc
Q 023375 90 VKDVDSQK-----LILN-------------------DGTEVPYGLLVWSTGVGPST-LVK-SLDLPKSPGGRIGIDE-WL 142 (283)
Q Consensus 90 V~~v~~~~-----v~~~-------------------~g~~i~~d~vi~a~G~~~~~-~~~-~~~l~~~~~g~i~Vd~-~l 142 (283)
+.++.++. |++. +++++++|+|||++|.+|+. +.. ..+++++++|++.||+ ++
T Consensus 334 v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~ 413 (457)
T PRK11749 334 PVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETG 413 (457)
T ss_pred cEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCC
Confidence 88886542 5542 23479999999999999994 333 4577788889999998 77
Q ss_pred ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 143 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 143 ~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
++ +.|+|||+|||+.- ++++..|+.||+.+|.+|.+.+.
T Consensus 414 ~T-s~~~VfA~GD~~~~---------~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 414 RT-SLPGVFAGGDIVTG---------AATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred cc-CCCCEEEeCCcCCC---------chHHHHHHHHHHHHHHHHHHHHh
Confidence 77 89999999999941 56889999999999999999886
No 49
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.82 E-value=1.8e-19 Score=162.58 Aligned_cols=151 Identities=23% Similarity=0.208 Sum_probs=118.9
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
.++++|||+|++|+|+|.+|...+ . +|+++++...... .......+.|+++||+++++ .++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g--------------~~~Vtvi~~~~~~~~---~~~~~~~~~l~~~gi~i~~~~~v~ 234 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLG--------------AEKVYLAYRRTINEA---PAGKYEIERLIARGVEFLELVTPV 234 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--------------CCeEEEEeecchhhC---CCCHHHHHHHHHcCCEEeeccCce
Confidence 479999999999999999998765 5 4999987532211 11133455689999999998 788
Q ss_pred EEeCC-e---EEE--------------------cCCcEEEeeEEEEcCCCCCch-hhhc-cCCCCCCCCccccCCCcccC
Q 023375 92 DVDSQ-K---LIL--------------------NDGTEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDEWLRVP 145 (283)
Q Consensus 92 ~v~~~-~---v~~--------------------~~g~~i~~d~vi~a~G~~~~~-~~~~-~~l~~~~~g~i~Vd~~l~~~ 145 (283)
+++++ . |++ .+++++++|.+|+++|.+|++ +... ++++++++|++.||+++++
T Consensus 235 ~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t- 313 (352)
T PRK12770 235 RIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMT- 313 (352)
T ss_pred eeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCccc-
Confidence 88653 2 222 123579999999999999995 4444 6787888889999999998
Q ss_pred CCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 146 SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 146 ~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+.|+||++|||+.. |..+..|++||+.+|.+|...+.
T Consensus 314 ~~~~vyaiGD~~~~---------~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTG---------PSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccC---------cchHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999852 56788999999999999988775
No 50
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=6.3e-20 Score=158.04 Aligned_cols=153 Identities=27% Similarity=0.425 Sum_probs=132.1
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
+.+++++|||+|++++|+|+-++.++ .++.++-+. .+|..|++.+++.+.+.|+.+||+++.+ .
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLg--------------sethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~ 252 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLG--------------SETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSS 252 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcC--------------CeeEEEEecchhhcchhHHHHHHHHHHhhhcceeeccccc
Confidence 57899999999999999999999998 899999887 8999999999999999999999999998 7
Q ss_pred eEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375 90 VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 161 (283)
Q Consensus 90 V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~ 161 (283)
++++... .+....|+...+|+++||+|..|+. -+++.|++++++|.|.||++.++ +.|+||++||++.-
T Consensus 253 ~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk-- 329 (478)
T KOG0405|consen 253 VTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGK-- 329 (478)
T ss_pred ceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCc--
Confidence 7777542 2444566555699999999999995 35667888999999999999999 99999999999842
Q ss_pred CCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 162 STGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 162 ~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
..+..+|+..|+.+|+.+..
T Consensus 330 -------~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 330 -------INLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred -------EecchHHHhhhhhHHHHhhc
Confidence 45566899999999987654
No 51
>PRK12831 putative oxidoreductase; Provisional
Probab=99.80 E-value=1.4e-18 Score=162.09 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=118.5
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG- 88 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~- 88 (283)
...++|+|||||++|+|+|..+.+++ .+|+++++. ..++....++ +.+.+.||+++++
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~G--------------a~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~ 339 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLG--------------AEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLT 339 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecc
Confidence 35689999999999999999999987 789999875 3444432222 3356789999988
Q ss_pred ceEEEeC--C-e---EEEc------------------CCc--EEEeeEEEEcCCCCCch-hhhc-cCCCCCCCCccccCC
Q 023375 89 IVKDVDS--Q-K---LILN------------------DGT--EVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDE 140 (283)
Q Consensus 89 ~V~~v~~--~-~---v~~~------------------~g~--~i~~d~vi~a~G~~~~~-~~~~-~~l~~~~~g~i~Vd~ 140 (283)
.+.++.. + . |.+. +|+ ++++|+||+++|..|+. ++.. .+++++++|++.||+
T Consensus 340 ~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~ 419 (464)
T PRK12831 340 NPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADE 419 (464)
T ss_pred cceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECC
Confidence 6777742 2 1 2221 222 69999999999999994 4444 578888889999998
Q ss_pred C-cccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 141 W-LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 141 ~-l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+ ++| +.|+|||+|||+.- +.++..|+.+|+.+|.+|.+.+.
T Consensus 420 ~~~~T-s~pgVfAaGD~~~g---------~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 420 ETGLT-SKEGVFAGGDAVTG---------AATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CCCcc-CCCCEEEeCCCCCC---------chHHHHHHHHHHHHHHHHHHHhc
Confidence 7 888 99999999999841 66789999999999999998875
No 52
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.80 E-value=1.2e-18 Score=171.95 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=120.7
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|+|||||.+|+|+|..+.+.... .+|+++.+. ..+|..++++... + +.||+++.. .
T Consensus 667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGa------------keVTLVyRr~~~~MPA~~eEle~A----l-eeGVe~~~~~~ 729 (1019)
T PRK09853 667 LGKHVVVVGGGNTAMDAARAALRVPGV------------EKVTVVYRRTKQEMPAWREEYEEA----L-EDGVEFKELLN 729 (1019)
T ss_pred CCCEEEEECCChHHHHHHHHHHhcCCC------------ceEEEEEccCcccccccHHHHHHH----H-HcCCEEEeCCc
Confidence 468999999999999999988776411 489999985 5677665554333 2 469999987 6
Q ss_pred eEEEeCC-eE-------------------EEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCC
Q 023375 90 VKDVDSQ-KL-------------------ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 148 (283)
Q Consensus 90 V~~v~~~-~v-------------------~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~ 148 (283)
+.+++.+ .+ ...+++++++|+||+|+|..|+ .++...+++++++|++.||+++++ +.|
T Consensus 730 p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqT-s~p 808 (1019)
T PRK09853 730 PESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGET-SLT 808 (1019)
T ss_pred eEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCccc-CCC
Confidence 7777532 12 1123457999999999999998 577778888888899999999998 899
Q ss_pred CEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 149 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 149 ~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+|||+|||+.. |.++..|+.||+.||+||.....
T Consensus 809 gVFAaGD~a~G---------p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 809 NVYMIGDVQRG---------PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CEEEEeccccC---------chHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999852 67889999999999999987653
No 53
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.80 E-value=9.4e-19 Score=165.50 Aligned_cols=150 Identities=23% Similarity=0.285 Sum_probs=121.5
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHh-CCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK-SGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~-~gV~v~~~-~V 90 (283)
+.++|+|||||++|+|+|..|+..+ .+|+++++.+.+.. ...+.+.+.+ .||+++.+ .+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~--------------~~Vtlv~~~~~l~~-----~~~l~~~l~~~~gI~i~~~~~v 410 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIV--------------KHVTVLEFAPELKA-----DQVLQDKLRSLPNVTIITNAQT 410 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEECccccc-----cHHHHHHHhcCCCcEEEECcEE
Confidence 5689999999999999999999877 89999998732221 2344556665 69999999 89
Q ss_pred EEEeCC-----eEEEc---CC--cEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375 91 KDVDSQ-----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159 (283)
Q Consensus 91 ~~v~~~-----~v~~~---~g--~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 159 (283)
+++.++ .+++. ++ +++++|.+++++|.+|+ .+++.. ++++++|++.||+++|+ +.|+|||+|||+..
T Consensus 411 ~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~ 488 (517)
T PRK15317 411 TEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGAT-SVPGVFAAGDCTTV 488 (517)
T ss_pred EEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCC-CCCCEEECccccCC
Confidence 998766 25554 23 36999999999999998 466655 67778899999999998 99999999999964
Q ss_pred CcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 160 LESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 160 ~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
..++...|+.+|..||.++...+.
T Consensus 489 --------~~k~~~~A~~eG~~Aa~~~~~~l~ 512 (517)
T PRK15317 489 --------PYKQIIIAMGEGAKAALSAFDYLI 512 (517)
T ss_pred --------CCCEEEEhhhhHHHHHHHHHHHHh
Confidence 246788899999999999988775
No 54
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.79 E-value=3.7e-18 Score=169.08 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=132.7
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG- 88 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~- 88 (283)
...++|+|||||.+|+|+|..+.+... ..+|+++++. ..+|...+++... .+.||+++..
T Consensus 664 ~~GK~VVVIGGGnvAmD~Ar~a~Rl~G------------a~kVtLVyRr~~~~Mpa~~eEl~~a-----leeGVe~~~~~ 726 (1012)
T TIGR03315 664 PLGKHVVVVGGGNTAMDAARAALRVPG------------VEKVTVVYRRTKRYMPASREELEEA-----LEDGVDFKELL 726 (1012)
T ss_pred ccCCeEEEECCCHHHHHHHHHHHHhCC------------CceEEEEEccCccccccCHHHHHHH-----HHcCCEEEeCC
Confidence 357899999999999999998876521 1489999975 4567665554332 2469999887
Q ss_pred ceEEEeCCeEEE-----------------cCCc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCC-cccCCC
Q 023375 89 IVKDVDSQKLIL-----------------NDGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW-LRVPSV 147 (283)
Q Consensus 89 ~V~~v~~~~v~~-----------------~~g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~-l~~~~~ 147 (283)
.+.+++++.++. .+|+ ++++|+||+|+|..|+ .+++.++++++++|++.||++ +++ +.
T Consensus 727 ~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~T-s~ 805 (1012)
T TIGR03315 727 SPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGET-NI 805 (1012)
T ss_pred ceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCcc-CC
Confidence 677776443221 1233 6899999999999998 577778888888899999986 777 89
Q ss_pred CCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhhCCCCCCCcC--CCCCCCCceeeecccEEEecC
Q 023375 148 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAK--DMELGDPFVYRHLGSMATIGR 222 (283)
Q Consensus 148 ~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~slG~ 222 (283)
|+|||+|||+.. |.++..|+.||+.||.+|.+......... ... ..+...+|.|..+|.+...+.
T Consensus 806 pgVFAaGD~a~G---------P~tVv~AIaqGr~AA~nIl~~~~~~~~~~-~~~~~~~~~~~~~~Y~~kG~la~~~~ 872 (1012)
T TIGR03315 806 TNVFVIGDANRG---------PATIVEAIADGRKAANAILSREGLNSDVD-KVFPINEEVRLAEVYQKKGILVIDDH 872 (1012)
T ss_pred CCEEEEeCcCCC---------ccHHHHHHHHHHHHHHHHhccccCCcccc-cccccccccccchhhccCcceeccCc
Confidence 999999999852 77899999999999999976543111000 000 001125788889988876553
No 55
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.79 E-value=2e-18 Score=164.45 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=118.1
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
...++|+|||||++|+|+|..|++++ .+|+++++. .+.. ... ...+.+...||+++++ .
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~~~~--~~~---~~~~~~~~~gV~i~~~~~ 201 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYA--------------SKVTVIVREPDFTC--AKL---IAEKVKNHPKIEVKFNTE 201 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccC--------------CEEEEEEeCCcccc--CHH---HHHHHHhCCCcEEEeCCE
Confidence 45689999999999999999998876 899999987 4321 222 2233345579999999 8
Q ss_pred eEEEeCCe----EEE---cCCcEE----EeeE----EEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEec
Q 023375 90 VKDVDSQK----LIL---NDGTEV----PYGL----LVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 154 (283)
Q Consensus 90 V~~v~~~~----v~~---~~g~~i----~~d~----vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiG 154 (283)
|+++.++. +.+ .+|++. ++|. |+|++|.+|+..+.+.+++++++|++.||+++++ +.|+|||+|
T Consensus 202 V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~T-s~p~IyAaG 280 (555)
T TIGR03143 202 LKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMET-NVPGVYAAG 280 (555)
T ss_pred EEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCcccc-CCCCEEEce
Confidence 99997652 222 356543 3566 9999999999544444677788899999999999 899999999
Q ss_pred cccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhh
Q 023375 155 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 192 (283)
Q Consensus 155 D~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~ 192 (283)
||+.. .+..+..|+.||+.+|.+|.+.+..
T Consensus 281 Dv~~~--------~~~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 281 DLRPK--------ELRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred eccCC--------CcchheeHHhhHHHHHHHHHHHHHh
Confidence 99741 2445678999999999999988863
No 56
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.79 E-value=7e-19 Score=153.36 Aligned_cols=153 Identities=22% Similarity=0.328 Sum_probs=133.4
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
+-+++++|||||.+|+|++.-..+++ .+||++|.. .+.+.++.++++..++.|.+.|++++++ +
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLG--------------seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tk 274 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLG--------------SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTK 274 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcC--------------CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccE
Confidence 34679999999999999999999998 999999986 8999999999999999999999999999 8
Q ss_pred eEEEeCC-----eEEEcC---C--cEEEeeEEEEcCCCCCch---hhhccCCCCCCCCccccCCCcccCCCCCEEEeccc
Q 023375 90 VKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 156 (283)
Q Consensus 90 V~~v~~~-----~v~~~~---g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~ 156 (283)
|...+.+ .|++.+ + ++++||.+++++|.+|.. -+++.|++.|++|++.||..+++ .+|+||+|||+
T Consensus 275 v~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv 353 (506)
T KOG1335|consen 275 VTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDV 353 (506)
T ss_pred EEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEeccc
Confidence 9888754 244432 2 579999999999999973 35667888899999999999999 89999999999
Q ss_pred cccCcCCCCcCCCcchHHHHHHHHHHHHHHHH
Q 023375 157 SGYLESTGKTVLPALAQVAERQGKYLFSLLNR 188 (283)
Q Consensus 157 a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~ 188 (283)
..- |.+|+.|..||-.+.+.|..
T Consensus 354 ~~g---------pMLAhkAeeegI~~VE~i~g 376 (506)
T KOG1335|consen 354 TLG---------PMLAHKAEEEGIAAVEGIAG 376 (506)
T ss_pred CCc---------chhhhhhhhhchhheeeecc
Confidence 952 99999999999988877653
No 57
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.77 E-value=1.5e-17 Score=155.67 Aligned_cols=155 Identities=20% Similarity=0.240 Sum_probs=118.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCH--------HHHHHHHHHHHhCCCE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD--------RLRHYATTQLSKSGVR 84 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~--------~~~~~~~~~l~~~gV~ 84 (283)
..++|+|||||++|+|+|..+.+.+. .+|++++.... +.... .......+.+.+.||+
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga-------------~~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~GV~ 345 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGA-------------KSVTQRDIMPM-PPSRRNKNNPWPYWPMKLEVSNAHEEGVE 345 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-------------CeEEEccccCC-CccccccccCCcccchHHHHHHHHHcCCe
Confidence 46899999999999999998887652 47887765421 11111 0011134567788999
Q ss_pred EEeC-ceEEEeC--Ce---EEE-----cCC---------cEEEeeEEEEcCCCCCc--hhhhccCCCCCCCCccccC-CC
Q 023375 85 LVRG-IVKDVDS--QK---LIL-----NDG---------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-EW 141 (283)
Q Consensus 85 v~~~-~V~~v~~--~~---v~~-----~~g---------~~i~~d~vi~a~G~~~~--~~~~~~~l~~~~~g~i~Vd-~~ 141 (283)
++++ .+++|.. +. |++ .+| +++++|+||+++|.+|+ .+++.++++.+++|++.|| ++
T Consensus 346 i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~ 425 (471)
T PRK12810 346 REFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNA 425 (471)
T ss_pred EEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCc
Confidence 9998 7888863 22 222 122 57999999999999997 3777788888888999998 78
Q ss_pred cccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 142 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 142 l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+++ +.|+|||+|||+.- +.++..|+.||+.+|.+|...+.
T Consensus 426 ~~T-s~~gVfa~GD~~~g---------~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 426 YQT-SNPKVFAAGDMRRG---------QSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ccC-CCCCEEEccccCCC---------chhHHHHHHHHHHHHHHHHHHHh
Confidence 998 89999999999951 55788999999999999999886
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.76 E-value=1.1e-17 Score=164.71 Aligned_cols=150 Identities=22% Similarity=0.268 Sum_probs=117.0
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG- 88 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~- 88 (283)
..++|+|||||++|+|+|..+.+++ . +|+++++. ..+|....++ +.+++.||+++.+
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~G--------------a~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~ 629 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLG--------------AERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLH 629 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcC--------------CCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecC
Confidence 4589999999999999999998876 5 49999875 3445432222 3467889999987
Q ss_pred ceEEEeC--C-e---EEEc---------CC-----------cEEEeeEEEEcCCCCCchh-hhcc-CCCCCCCCccccCC
Q 023375 89 IVKDVDS--Q-K---LILN---------DG-----------TEVPYGLLVWSTGVGPSTL-VKSL-DLPKSPGGRIGIDE 140 (283)
Q Consensus 89 ~V~~v~~--~-~---v~~~---------~g-----------~~i~~d~vi~a~G~~~~~~-~~~~-~l~~~~~g~i~Vd~ 140 (283)
.+.++.. + . |.+. +| .++++|+||+|+|..|+.. .... +++.+++|++.||+
T Consensus 630 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~ 709 (752)
T PRK12778 630 NPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDE 709 (752)
T ss_pred cceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCC
Confidence 6777642 1 1 3331 12 2599999999999999953 3333 67788889999999
Q ss_pred CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 141 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 141 ~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
++++ +.|+|||+|||+.- +.++..|+.+|+.+|.+|.+.+.
T Consensus 710 ~~~T-s~~gVfA~GD~~~g---------~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 710 EMQS-SIPGIYAGGDIVRG---------GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCC-CCCCEEEeCCccCC---------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988 89999999999851 66889999999999999998875
No 59
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.76 E-value=2.3e-17 Score=159.70 Aligned_cols=152 Identities=21% Similarity=0.271 Sum_probs=118.9
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG- 88 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~- 88 (283)
...++|+|||||.+|+|+|..+.+++. .+|+++++. ..+|..+.++.+ . .+.||+++.+
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~Ga-------------~~Vtlv~r~~~~~mpa~~~ei~~----a-~~eGV~i~~~~ 382 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLGA-------------ESVTILYRRTREEMPANRAEIEE----A-LAEGVSLRELA 382 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHHH----H-HHcCCcEEecc
Confidence 356899999999999999999987761 479999875 356765444322 2 3569999988
Q ss_pred ceEEEeC--CeE--E---Ec---------------CCc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCC-Cc
Q 023375 89 IVKDVDS--QKL--I---LN---------------DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDE-WL 142 (283)
Q Consensus 89 ~V~~v~~--~~v--~---~~---------------~g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~-~l 142 (283)
.+.++.. +.+ . ++ +|+ ++++|+||+++|..|+ .++...+++.+.+|++.||+ ++
T Consensus 383 ~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~ 462 (652)
T PRK12814 383 APVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETL 462 (652)
T ss_pred CcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCC
Confidence 6777753 221 1 11 122 5899999999999998 46677788888889999997 56
Q ss_pred ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 143 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 143 ~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
++ +.|+|||+|||+.. |.++..|+.||+.+|.+|.+.+.
T Consensus 463 ~T-s~pgVfA~GDv~~g---------~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 463 QT-SVAGVFAGGDCVTG---------ADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred cC-CCCCEEEcCCcCCC---------chHHHHHHHHHHHHHHHHHHHHc
Confidence 66 89999999999852 66889999999999999999987
No 60
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.76 E-value=1.8e-17 Score=151.82 Aligned_cols=162 Identities=27% Similarity=0.317 Sum_probs=137.8
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCC-HHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~-~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
.++++|||+|+.|+|+|..+++.+ ++|++++.. ++++.+- +.+.+.+.+.|+++||+++++ .+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G--------------~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 201 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRG--------------KKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKV 201 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCce
Confidence 479999999999999999999988 999999998 8888877 899999999999999999999 89
Q ss_pred EEEeCCe-------EEEcCCcEEEeeEEEEcCCCCCchhhhccCC--CCCCCCccccCCCcccCCCCCEEEeccccccCc
Q 023375 91 KDVDSQK-------LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL--PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 161 (283)
Q Consensus 91 ~~v~~~~-------v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l--~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~ 161 (283)
.+|+.+. +...+++++++|.+++++|.+|+..+.+... .....|++.||+.+++...++||++|||+..+.
T Consensus 202 ~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~ 281 (415)
T COG0446 202 VGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPA 281 (415)
T ss_pred EEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeec
Confidence 9998752 5677889999999999999999865555443 455678999999999833899999999999876
Q ss_pred CC-CCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375 162 ST-GKTVLPALAQVAERQGKYLFSLLNRI 189 (283)
Q Consensus 162 ~~-~~~~~p~~~~~A~~qg~~~a~~i~~~ 189 (283)
+. +.....+.++.|..+++.++.++...
T Consensus 282 ~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 282 AETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred ccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 54 23345778899999999999988643
No 61
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.2e-17 Score=144.01 Aligned_cols=152 Identities=24% Similarity=0.314 Sum_probs=125.2
Q ss_pred HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhC-CCEEEeC-
Q 023375 11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS-GVRLVRG- 88 (283)
Q Consensus 11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~-gV~v~~~- 88 (283)
..+.++|+|||||.+++|-|..|+++. .+|+++++..-+.. .+.+.+.++++ +|+++.+
T Consensus 140 ~~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra-----~~~~~~~l~~~~~i~~~~~~ 200 (305)
T COG0492 140 FFKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA-----EEILVERLKKNVKIEVLTNT 200 (305)
T ss_pred cccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc-----CHHHHHHHHhcCCeEEEeCC
Confidence 455679999999999999999999998 88999999854433 23344555555 8999999
Q ss_pred ceEEEeCC---eEEEcCC----cEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccC
Q 023375 89 IVKDVDSQ---KLILNDG----TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL 160 (283)
Q Consensus 89 ~V~~v~~~---~v~~~~g----~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 160 (283)
.+.++.++ .|++++. +++++|-++++.|..|+ .++...+. ++++|+|.||+.++| +.|+|||+||++..
T Consensus 201 ~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~T-svpGifAaGDv~~~- 277 (305)
T COG0492 201 VVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEMET-SVPGIFAAGDVADK- 277 (305)
T ss_pred ceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCccc-CCCCEEEeEeeccC-
Confidence 89999884 6777763 36899999999999999 57777666 788999999999999 99999999999963
Q ss_pred cCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 161 ESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 161 ~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
..+++..|..+|..+|.++.+.+.
T Consensus 278 -------~~rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 278 -------NGRQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred -------cccEEeehhhhHHHHHHHHHHHhh
Confidence 133777899999999999888775
No 62
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.74 E-value=6.7e-18 Score=158.20 Aligned_cols=158 Identities=24% Similarity=0.400 Sum_probs=135.1
Q ss_pred HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-CCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375 11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-SSFDDRLRHYATTQLSKSGVRLVRG 88 (283)
Q Consensus 11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-~~~~~~~~~~~~~~l~~~gV~v~~~ 88 (283)
.+..++-+|||||..|+|+|..|.+.+ .++++++-. .++ ..+++.....+...++++|++++++
T Consensus 142 ar~~~~avVIGGGLLGlEaA~~L~~~G--------------m~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~ 207 (793)
T COG1251 142 ARNKKKAVVIGGGLLGLEAARGLKDLG--------------MEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLE 207 (793)
T ss_pred HhccCCcEEEccchhhhHHHHHHHhCC--------------CceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecc
Confidence 345567899999999999999999988 999999887 444 5688889999999999999999998
Q ss_pred -ceEEEeC----CeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375 89 -IVKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 162 (283)
Q Consensus 89 -~V~~v~~----~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~ 162 (283)
..+++.+ +.+.++||+.+++|.|||++|++|+ .+....+++.++ .|.||+++|| +.|+|||+|+|+.+..
T Consensus 208 ~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd~mqT-sdpdIYAvGEcae~~g- 283 (793)
T COG1251 208 KNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVNDYMQT-SDPDIYAVGECAEHRG- 283 (793)
T ss_pred cchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC--Ceeecccccc-cCCCeeehhhHHHhcC-
Confidence 4555543 3688999999999999999999999 677778998876 6999999999 9999999999998643
Q ss_pred CCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375 163 TGKTVLPALAQVAERQGKYLFSLLNRIG 190 (283)
Q Consensus 163 ~~~~~~p~~~~~A~~qg~~~a~~i~~~~ 190 (283)
....+...+..||+++|+++....
T Consensus 284 ----~~yGLVaP~yeq~~v~a~hl~~~~ 307 (793)
T COG1251 284 ----KVYGLVAPLYEQAKVLADHLCGGE 307 (793)
T ss_pred ----ccceehhHHHHHHHHHHHHhccCc
Confidence 357777889999999999987543
No 63
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.74 E-value=8.3e-17 Score=150.33 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=117.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++++|||||.+|+++|..+.+++. .+|+++++. ..+|..+.++ +.+++.||+++++ .
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~ 342 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGA-------------ASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQ 342 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-------------CeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCC
Confidence 35799999999999999999887761 479999975 3466554433 3467789999999 7
Q ss_pred eEEEeC--C-e---EEEc---------C-----------CcEEEeeEEEEcCCCCCc--hhhhccCCCCCCCCccccC--
Q 023375 90 VKDVDS--Q-K---LILN---------D-----------GTEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-- 139 (283)
Q Consensus 90 V~~v~~--~-~---v~~~---------~-----------g~~i~~d~vi~a~G~~~~--~~~~~~~l~~~~~g~i~Vd-- 139 (283)
+.++.. + . |++. + .+++++|.||+++|.+|+ .++..++++.+++|++.||
T Consensus 343 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~ 422 (467)
T TIGR01318 343 PVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDV 422 (467)
T ss_pred cEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCc
Confidence 888853 2 2 2321 1 136899999999999997 3566678888888999999
Q ss_pred --CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375 140 --EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 190 (283)
Q Consensus 140 --~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~ 190 (283)
.++++ +.|+||++|||+.. +.++..|+.+|+.+|.+|.+.+
T Consensus 423 ~~~~~~T-~~~gVfa~GD~~~~---------~~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 423 SYLPYQT-TNPKIFAGGDAVRG---------ADLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred cccCccC-CCCCEEEECCcCCC---------ccHHHHHHHHHHHHHHHHHHHh
Confidence 67887 89999999999852 5677899999999999998876
No 64
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.73 E-value=1.2e-16 Score=155.16 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=118.5
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|+|||||++|+++|..+.+++. .+|+++.+. . .+|..+.+ .+.+++.||+++++ .
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~ga-------------~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~ 528 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHGA-------------SNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQ 528 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccC
Confidence 35799999999999999998887761 479999875 3 45654433 34577889999988 7
Q ss_pred eEEEeC---Ce---EEEc---------CC-----------cEEEeeEEEEcCCCCCch--hhhccCCCCCCCCccccCC-
Q 023375 90 VKDVDS---QK---LILN---------DG-----------TEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDE- 140 (283)
Q Consensus 90 V~~v~~---~~---v~~~---------~g-----------~~i~~d~vi~a~G~~~~~--~~~~~~l~~~~~g~i~Vd~- 140 (283)
++++.. +. |++. +| .++++|+||+|+|+.|++ +++.++++++++|.+.||+
T Consensus 529 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~ 608 (654)
T PRK12769 529 PVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVE 608 (654)
T ss_pred cEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCC
Confidence 777742 22 3331 12 269999999999999983 6677788888899999985
Q ss_pred ---CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 141 ---WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 141 ---~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+++| +.|+|||+||++.. +.++..|+.+|+.+|.+|.+.+.
T Consensus 609 ~~~~~~T-s~~gVfAaGD~~~g---------~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 609 SQYRYQT-SNPKIFAGGDAVRG---------ADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cccCccc-CCCCEEEcCCcCCC---------CcHHHHHHHHHHHHHHHHHHHhC
Confidence 4788 89999999999852 66788999999999999998874
No 65
>PRK13984 putative oxidoreductase; Provisional
Probab=99.71 E-value=2.9e-16 Score=151.33 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=107.5
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
.++|+|||||++|+|+|..+++++... + ...+|+++... ..++....++ .+ +.+.||+++.+ .
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~----~----g~~~V~v~~~~r~~~~~~~~~~e~----~~-~~~~GV~i~~~~~ 484 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKME----Y----GEVNVKVTSLERTFEEMPADMEEI----EE-GLEEGVVIYPGWG 484 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccc----c----CceEEEEeccccCcccCCCCHHHH----HH-HHHcCCEEEeCCC
Confidence 579999999999999999998764100 0 11467776432 3344433332 22 34579999987 6
Q ss_pred eEEEeC--C---eEEEc-------------------CCcEEEeeEEEEcCCCCCc-hhhh-cc--CCCCCCCCccccCCC
Q 023375 90 VKDVDS--Q---KLILN-------------------DGTEVPYGLLVWSTGVGPS-TLVK-SL--DLPKSPGGRIGIDEW 141 (283)
Q Consensus 90 V~~v~~--~---~v~~~-------------------~g~~i~~d~vi~a~G~~~~-~~~~-~~--~l~~~~~g~i~Vd~~ 141 (283)
+.++.. + .|++. +.+++++|.||+++|.+|+ .++. .+ +++. ++|++.||++
T Consensus 485 ~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~ 563 (604)
T PRK13984 485 PMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEY 563 (604)
T ss_pred CEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCC
Confidence 666642 1 12221 1247999999999999998 3433 22 3444 4688999999
Q ss_pred cccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 142 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 142 l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+|| +.|+|||+|||+.. + ....|+.+|+.+|.+|...+.
T Consensus 564 ~~T-s~~gVfAaGD~~~~---------~-~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 564 GQT-SIPWLFAGGDIVHG---------P-DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred Ccc-CCCCEEEecCcCCc---------h-HHHHHHHHHHHHHHHHHHHhc
Confidence 998 99999999999952 3 346799999999999998874
No 66
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.70 E-value=3.9e-16 Score=155.67 Aligned_cols=150 Identities=19% Similarity=0.240 Sum_probs=115.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|+|||||.+|+++|..+.+++ .+|+++.+. ..+|....++. . ..+.||+++.+ .
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~G--------------a~Vtlv~rr~~~~mpa~~~e~~----~-a~eeGV~~~~~~~ 506 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLG--------------GNVTIVYRRTKSEMPARVEELH----H-ALEEGINLAVLRA 506 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEEecCcccccccHHHHH----H-HHHCCCEEEeCcc
Confidence 4589999999999999999999887 789999875 34554433332 2 33569999887 7
Q ss_pred eEEEeCC----eE---EE---------c--------CC--cEEEeeEEEEcCCCCCchhhhc--cCCCCCCCCccccCC-
Q 023375 90 VKDVDSQ----KL---IL---------N--------DG--TEVPYGLLVWSTGVGPSTLVKS--LDLPKSPGGRIGIDE- 140 (283)
Q Consensus 90 V~~v~~~----~v---~~---------~--------~g--~~i~~d~vi~a~G~~~~~~~~~--~~l~~~~~g~i~Vd~- 140 (283)
++++..+ .| .+ . +| .++++|+||+|+|..|++.+.. .+++.+++|.|.||+
T Consensus 507 p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~ 586 (944)
T PRK12779 507 PREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKG 586 (944)
T ss_pred eEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCC
Confidence 7777432 12 11 1 12 3699999999999999965432 367778889999996
Q ss_pred CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 141 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 141 ~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+++| +.|+|||+|||+.- +.++..|+.+|+.||.+|...+.
T Consensus 587 ~~~T-s~pgVFAaGD~~~G---------~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 587 SQRT-SIKGVYSGGDAARG---------GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCcc-CCCCEEEEEcCCCC---------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 4777 89999999999951 56889999999999999998875
No 67
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9.9e-17 Score=138.05 Aligned_cols=156 Identities=26% Similarity=0.403 Sum_probs=126.4
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC---
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG--- 88 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~--- 88 (283)
..+-+.+|||+|+.++|+|+.|+.++ .+|++.-++-+|..|+.++.+.+.+.|+++||++...
T Consensus 196 ~~PGkTLvVGa~YVaLECAgFL~gfg--------------~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp 261 (503)
T KOG4716|consen 196 YEPGKTLVVGAGYVALECAGFLKGFG--------------YDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVP 261 (503)
T ss_pred CCCCceEEEccceeeeehhhhHhhcC--------------CCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccc
Confidence 34568899999999999999999988 8999999999999999999999999999999999866
Q ss_pred -ceEEEeCCe--EEEc---CC--cEEEeeEEEEcCCCCCch---hhhccCCCCC-CCCccccCCCcccCCCCCEEEeccc
Q 023375 89 -IVKDVDSQK--LILN---DG--TEVPYGLLVWSTGVGPST---LVKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVGDC 156 (283)
Q Consensus 89 -~V~~v~~~~--v~~~---~g--~~i~~d~vi~a~G~~~~~---~~~~~~l~~~-~~g~i~Vd~~l~~~~~~~VfaiGD~ 156 (283)
+|++++... |... .+ -+-.+|+|+||+|..+.. -+.+.|...+ .+|.|.||+.-++ +.|.|||+||.
T Consensus 262 ~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDI 340 (503)
T KOG4716|consen 262 ERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDI 340 (503)
T ss_pred eeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-CCCceEEecce
Confidence 355555554 2222 22 245699999999998873 2334455553 4688999999888 99999999999
Q ss_pred cccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375 157 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 190 (283)
Q Consensus 157 a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~ 190 (283)
.. ..|.+...|++.|+.+|+.+..-.
T Consensus 341 l~--------~kpELTPvAIqsGrlLa~Rlf~gs 366 (503)
T KOG4716|consen 341 LE--------DKPELTPVAIQSGRLLARRLFAGS 366 (503)
T ss_pred ec--------CCcccchhhhhhchHHHHHHhcCc
Confidence 85 348889999999999999876543
No 68
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.67 E-value=1.3e-15 Score=142.86 Aligned_cols=156 Identities=22% Similarity=0.262 Sum_probs=110.7
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC---------CCCHH--HHHHHHHHHHh
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---------SFDDR--LRHYATTQLSK 80 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~---------~~~~~--~~~~~~~~l~~ 80 (283)
..++|+|||||++|+|+|..+.+.+. .+|++++.. ..+. .++.. .....++..+.
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga-------------~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~ 348 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGA-------------ASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAH 348 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhh
Confidence 46899999999999999988877652 589999865 3322 11111 22223344444
Q ss_pred CCCEE-EeC-ceEEEeCC---e---EEE--------cCC-----------cEEEeeEEEEcCCCC-Cc-hhhhccCCCCC
Q 023375 81 SGVRL-VRG-IVKDVDSQ---K---LIL--------NDG-----------TEVPYGLLVWSTGVG-PS-TLVKSLDLPKS 131 (283)
Q Consensus 81 ~gV~v-~~~-~V~~v~~~---~---v~~--------~~g-----------~~i~~d~vi~a~G~~-~~-~~~~~~~l~~~ 131 (283)
.||++ +.+ .+.++..+ . +.+ ++| .++++|+||+++|.. |+ .++..++++++
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~ 428 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKT 428 (485)
T ss_pred cCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccC
Confidence 57654 334 45555321 1 221 123 379999999999996 66 57777888888
Q ss_pred CCCcccc-CCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 132 PGGRIGI-DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 132 ~~g~i~V-d~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
++|++.+ |+++++ +.|+|||+|||+.. +.++..|+.+|+.+|.+|.+.+.
T Consensus 429 ~~G~i~~~~~~~~T-s~~gVfAaGD~~~g---------~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 429 RRGNISAGYDDYST-SIPGVFAAGDCRRG---------QSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred CCCCEEecCCCceE-CCCCEEEeeccCCC---------cHHHHHHHHHHHHHHHHHHHHHh
Confidence 8898855 577887 99999999999851 56788999999999999999986
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.66 E-value=2.5e-15 Score=145.47 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=117.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|+|||||.+|+++|..+.+++. .+|+++.+. . .+|..+.++. .+++.||+++++ .
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga-------------~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv~~~~~~~ 511 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNA-------------ASVTCAYRRDEVSMPGSRKEVV-----NAREEGVEFQFNVQ 511 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHH-----HHHHcCCeEEeccC
Confidence 45899999999999999998877661 479999875 3 3565544432 356789999988 7
Q ss_pred eEEEeC---CeE---EE---c------CC-----------cEEEeeEEEEcCCCCCc--hhhhccCCCCCCCCccccCC-
Q 023375 90 VKDVDS---QKL---IL---N------DG-----------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGIDE- 140 (283)
Q Consensus 90 V~~v~~---~~v---~~---~------~g-----------~~i~~d~vi~a~G~~~~--~~~~~~~l~~~~~g~i~Vd~- 140 (283)
++++.. +.| .+ + +| .++++|+||+++|..|+ .+++.++++++++|++.||+
T Consensus 512 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~ 591 (639)
T PRK12809 512 PQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDV 591 (639)
T ss_pred CEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCC
Confidence 888752 222 21 1 12 36899999999999997 35666788888889999985
Q ss_pred ---CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 141 ---WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 141 ---~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+++| +.|+|||+|||+.. +.+...|+.+|+.+|++|...+.
T Consensus 592 ~~~~~~T-s~~gVfA~GD~~~g---------~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 592 GYLPTQT-HLKKVFAGGDAVHG---------ADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cccCccc-CCCCEEEcCCCCCC---------chHHHHHHHHHHHHHHHHHHHHh
Confidence 4788 89999999999852 56788999999999999999885
No 70
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.65 E-value=2.2e-16 Score=139.18 Aligned_cols=166 Identities=19% Similarity=0.266 Sum_probs=134.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEE-EEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT-LIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~-li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|-|||+|+.|.|+|+.|.+..+. .+.+|+ +|+.. ..-.-+++-++++..+.+++.||.++.+ .
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~----------~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~ 415 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRN----------EGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAK 415 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhc----------cCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchh
Confidence 347999999999999999999876531 346666 44433 3333455788999999999999999999 7
Q ss_pred eEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCC-CccccCCCcccCCCCCEEEeccccccCcCC
Q 023375 90 VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPG-GRIGIDEWLRVPSVQDVFAVGDCSGYLEST 163 (283)
Q Consensus 90 V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~-g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~ 163 (283)
|.++... .+.+.||.++..|+|++|+|..|| .+.+.++++.|++ |.+.||..|+. ..|||++||++.+.++-
T Consensus 416 v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~ 493 (659)
T KOG1346|consen 416 VESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGV 493 (659)
T ss_pred hhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec--ccceeeecchhhhhccc
Confidence 8777543 467789999999999999999999 6777889999875 78999999987 68999999999998864
Q ss_pred CCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375 164 GKTVLPALAQVAERQGKYLFSLLNRIG 190 (283)
Q Consensus 164 ~~~~~p~~~~~A~~qg~~~a~~i~~~~ 190 (283)
-++-+-....+|.-.|+.++.|+....
T Consensus 494 LGrRRVehhdhavvSGRLAGENMtgAa 520 (659)
T KOG1346|consen 494 LGRRRVEHHDHAVVSGRLAGENMTGAA 520 (659)
T ss_pred ccceeccccccceeeceeccccccccc
Confidence 444566777889999999999987544
No 71
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.65 E-value=7e-15 Score=147.90 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=114.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|+|||||.+|+++|..+.+++. ..|+++.+. .-+|....+ .+.+++.||+++.+ .
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~ 631 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHS 631 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCC
Confidence 56899999999999999999888762 468888764 334433222 24567789999988 6
Q ss_pred eEEEeC--C-e---EEEc-----------------CC--cEEEeeEEEEcCCCCCch-hhhc-cCCCCCCCCccccCC--
Q 023375 90 VKDVDS--Q-K---LILN-----------------DG--TEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDE-- 140 (283)
Q Consensus 90 V~~v~~--~-~---v~~~-----------------~g--~~i~~d~vi~a~G~~~~~-~~~~-~~l~~~~~g~i~Vd~-- 140 (283)
+.++.. + . |++. +| .++++|+||+++|..|+. +... .+++++++|.+.+|+
T Consensus 632 p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~ 711 (1006)
T PRK12775 632 PVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGK 711 (1006)
T ss_pred cEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCc
Confidence 777742 2 1 3221 12 269999999999999995 3333 367777889999996
Q ss_pred ---CcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 141 ---WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 141 ---~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+++| +.|+|||+|||+.- +.++..|+.+|+.+|.+|...+.
T Consensus 712 v~~~~~T-s~pgVFAaGDv~~G---------~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 712 LESTQST-NLPGVFAGGDIVTG---------GATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred cccCcCC-CCCCEEEecCcCCC---------ccHHHHHHHHHHHHHHHHHHHHh
Confidence 6777 99999999999851 67889999999999999999987
No 72
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.64 E-value=5.1e-15 Score=141.56 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=115.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
..++|+|||||.+|++.|..+.+++. .+|+++.+. ..++.....+. ...+.||+++.+ .
T Consensus 266 ~gk~v~ViGgg~~a~d~a~~a~~lga-------------~~v~ii~r~~~~~~~~~~~~~~-----~a~~~GVki~~~~~ 327 (564)
T PRK12771 266 LGKRVVVIGGGNTAMDAARTARRLGA-------------EEVTIVYRRTREDMPAHDEEIE-----EALREGVEINWLRT 327 (564)
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCC-------------CEEEEEEecCcccCCCCHHHHH-----HHHHcCCEEEecCC
Confidence 36799999999999999988877652 578888875 34555444332 245679999988 7
Q ss_pred eEEEeCCe-----E---EE------cCC---------cEEEeeEEEEcCCCCCc-hhhhc-cCCCCCCCCccccCC-Ccc
Q 023375 90 VKDVDSQK-----L---IL------NDG---------TEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDE-WLR 143 (283)
Q Consensus 90 V~~v~~~~-----v---~~------~~g---------~~i~~d~vi~a~G~~~~-~~~~~-~~l~~~~~g~i~Vd~-~l~ 143 (283)
+.++..+. + .+ ++| .++++|+||+++|..|+ .++.+ .++. +++|++.||+ +++
T Consensus 328 ~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ 406 (564)
T PRK12771 328 PVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMM 406 (564)
T ss_pred cEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCcc
Confidence 88886431 1 11 112 37999999999999998 46654 4676 6789999998 566
Q ss_pred cCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 144 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 144 ~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
+ +.|+||++|||+.. |.++..|+.||+.+|.+|.+.+.
T Consensus 407 t-s~~~Vfa~GD~~~g---------~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 407 T-GRPGVFAGGDMVPG---------PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred C-CCCCEEeccCcCCC---------chHHHHHHHHHHHHHHHHHHHHc
Confidence 6 99999999999851 77899999999999999999986
No 73
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.58 E-value=2.7e-15 Score=124.35 Aligned_cols=129 Identities=31% Similarity=0.503 Sum_probs=92.6
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC----CCCCH-----------HHH--H--HHHH
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD-----------RLR--H--YATT 76 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l----~~~~~-----------~~~--~--~~~~ 76 (283)
+|+|||||++|+.+|.+|++.+ .+|++++..... ..++. ... . .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--------------~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--------------AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCC--------------CeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999665 999999765311 11110 011 1 3344
Q ss_pred HHHhCCCEEEeC-ceEEEeCC--eE----------EEcCCcEEEeeEEEEcCCCCCchh-h-------------------
Q 023375 77 QLSKSGVRLVRG-IVKDVDSQ--KL----------ILNDGTEVPYGLLVWSTGVGPSTL-V------------------- 123 (283)
Q Consensus 77 ~l~~~gV~v~~~-~V~~v~~~--~v----------~~~~g~~i~~d~vi~a~G~~~~~~-~------------------- 123 (283)
.+...+++++.+ ++.+++.. .+ ...++.+++||.+|+|+|..|+.. +
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFL 146 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHH
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccc
Confidence 457789999877 78887643 21 123456899999999999886511 0
Q ss_pred ------------------hccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375 124 ------------------KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159 (283)
Q Consensus 124 ------------------~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 159 (283)
+..+++++++|++.||+++|+ +.|+||++|||+.+
T Consensus 147 ~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 147 ELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGI 199 (201)
T ss_dssp THSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEE
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 233556678899999999999 79999999999975
No 74
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.50 E-value=2.2e-13 Score=96.31 Aligned_cols=74 Identities=34% Similarity=0.560 Sum_probs=67.2
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 93 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 93 (283)
+|+|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ .++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--------------~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--------------KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--------------cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 6899999999999999999987 999999998 7889999999999999999999999999 89998
Q ss_pred eCC--e--EEEcCC
Q 023375 94 DSQ--K--LILNDG 103 (283)
Q Consensus 94 ~~~--~--v~~~~g 103 (283)
+.+ + |+++||
T Consensus 67 ~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 67 EKDGDGVEVTLEDG 80 (80)
T ss_dssp EEETTSEEEEEETS
T ss_pred EEeCCEEEEEEecC
Confidence 654 4 677765
No 75
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2e-13 Score=118.22 Aligned_cols=153 Identities=22% Similarity=0.282 Sum_probs=114.2
Q ss_pred CCCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhC
Q 023375 2 FLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS 81 (283)
Q Consensus 2 ~~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~ 81 (283)
+||-+|-. --+.|+|+|||||.+|+|+|..|+-.. .+||++|-..-|. .-+.+++.|++.
T Consensus 343 yCPHCDGP-LF~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eLk-----AD~VLq~kl~sl 402 (520)
T COG3634 343 YCPHCDGP-LFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPELK-----ADAVLQDKLRSL 402 (520)
T ss_pred eCCCCCCc-ccCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhhh-----hHHHHHHHHhcC
Confidence 35666654 357789999999999999999999876 7899996442221 223455556554
Q ss_pred -CCEEEeC-ceEEEeCC-----eEEEc---CCc--EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCC
Q 023375 82 -GVRLVRG-IVKDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 148 (283)
Q Consensus 82 -gV~v~~~-~V~~v~~~-----~v~~~---~g~--~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~ 148 (283)
+|+++++ .-++|.++ ++.+. +|+ .+.-+-|++-.|..|| .|++.. ++++++|.|.||....+ +.|
T Consensus 403 ~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~T-svp 480 (520)
T COG3634 403 PNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGET-NVP 480 (520)
T ss_pred CCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCc-CCC
Confidence 7999999 78899776 34443 343 4677789999999999 577765 88899999999999999 999
Q ss_pred CEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHH
Q 023375 149 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 184 (283)
Q Consensus 149 ~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~ 184 (283)
+|||+|||...+ .++...|+.+|..++-
T Consensus 481 GvFAAGD~T~~~--------yKQIIIamG~GA~AaL 508 (520)
T COG3634 481 GVFAAGDCTTVP--------YKQIIIAMGEGAKASL 508 (520)
T ss_pred ceeecCcccCCc--------cceEEEEecCcchhhh
Confidence 999999999753 3444455555655543
No 76
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.42 E-value=4.6e-12 Score=128.05 Aligned_cols=147 Identities=17% Similarity=0.145 Sum_probs=108.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
..++|+|||+|++|+|+|..|++.+. ..|++++....+ ...+.+.|++.||+++++ .|+
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G~-------------~vV~vv~~~~~~-------~~~l~~~L~~~GV~i~~~~~v~ 375 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAGI-------------AVVAIIDARADV-------SPEARAEARELGIEVLTGHVVA 375 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-------------ceEEEEccCcch-------hHHHHHHHHHcCCEEEcCCeEE
Confidence 45899999999999999999998762 457888765311 233566788999999999 788
Q ss_pred EEeCC----eEEEc----CCcEEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcC
Q 023375 92 DVDSQ----KLILN----DGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 162 (283)
Q Consensus 92 ~v~~~----~v~~~----~g~~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~ 162 (283)
++.++ .|++. +++++++|.|+++.|.+|+ .+...+++++.-+.... .+...++.|+||++|||+.
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~--~~~~~t~v~gVyaaGD~~g---- 449 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIA--AFLPGDAVQGCILAGAANG---- 449 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccC--ceecCCCCCCeEEeeccCC----
Confidence 88765 35554 4568999999999999999 56666665542111100 0111236899999999984
Q ss_pred CCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 163 TGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 163 ~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
...+..|+.+|+.+|..+...+.
T Consensus 450 ------~~~~~~A~~eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 450 ------LFGLAAALADGAAAGAAAARAAG 472 (985)
T ss_pred ------ccCHHHHHHHHHHHHHHHHHHcC
Confidence 44677899999999999887663
No 77
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.39 E-value=6.5e-13 Score=113.90 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=47.6
Q ss_pred CCCCccccC-CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 131 SPGGRIGID-EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 131 ~~~g~i~Vd-~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
|..|++.|| .++|++.+||||+||||.+. |..+++..+..|..++-+|+-...+
T Consensus 307 dktGfvdVD~~TlQs~kypNVFgiGDc~n~-------PnsKTaAAvaaq~~vv~~nl~~~m~ 361 (446)
T KOG3851|consen 307 DKTGFVDVDQSTLQSKKYPNVFGIGDCMNL-------PNSKTAAAVAAQSPVVDKNLTQVMQ 361 (446)
T ss_pred CcccceecChhhhccccCCCceeeccccCC-------CchhhHHHHHhcCchhhhhHHHHhc
Confidence 567999999 68999999999999999985 4578888888999999999998886
No 78
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.7e-12 Score=103.18 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=110.1
Q ss_pred HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHH-HHHHhCCCEEEeC-
Q 023375 11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT-TQLSKSGVRLVRG- 88 (283)
Q Consensus 11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~-~~l~~~gV~v~~~- 88 (283)
.-+.+-.+|||||.+++|-|..|..++ .+|.++++.+.+. .++.++ +.++.-+|+++.+
T Consensus 154 ifrnk~laVIGGGDsA~EEA~fLtkya--------------skVyii~Rrd~fR-----As~~Mq~ra~~npnI~v~~nt 214 (322)
T KOG0404|consen 154 IFRNKPLAVIGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHFR-----ASKIMQQRAEKNPNIEVLYNT 214 (322)
T ss_pred hhcCCeeEEEcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhhh-----HHHHHHHHHhcCCCeEEEech
Confidence 356788999999999999999999988 8999999874332 223333 3344568999988
Q ss_pred ceEEEeCC-----eEEE-----cCCcEEEeeEEEEcCCCCCch-hhhccCCCCCCCCccccCCCcccCCCCCEEEecccc
Q 023375 89 IVKDVDSQ-----KLIL-----NDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 157 (283)
Q Consensus 89 ~V~~v~~~-----~v~~-----~~g~~i~~d~vi~a~G~~~~~-~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a 157 (283)
.+.+..++ .+.+ .+-+.++.+-++.+.|..|++ +++. .+++|++|+|.+-+.-..++.|++||+||+.
T Consensus 215 ~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVq 293 (322)
T KOG0404|consen 215 VAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQ 293 (322)
T ss_pred hhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccc
Confidence 44454443 2333 233579999999999999995 5544 8889999999998555445999999999998
Q ss_pred ccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375 158 GYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 190 (283)
Q Consensus 158 ~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~ 190 (283)
.. .-.++..|...|.++|-.-.+++
T Consensus 294 D~--------kyRQAvTaAgsGciaaldAe~yL 318 (322)
T KOG0404|consen 294 DK--------KYRQAVTAAGSGCIAALDAERYL 318 (322)
T ss_pred hH--------HHHHHHhhhccchhhhhhHHHHh
Confidence 63 24456666667777765444443
No 79
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.19 E-value=5.1e-10 Score=104.53 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=60.2
Q ss_pred EEEeeEEEEcCCCCCch-----hhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHH
Q 023375 105 EVPYGLLVWSTGVGPST-----LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 179 (283)
Q Consensus 105 ~i~~d~vi~a~G~~~~~-----~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg 179 (283)
++++|.||.+.|.++.+ +-...++..+.+|+|.+|+.+++ +.|+|||+|||.. | .....-.++.+|
T Consensus 340 ~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~-----G---p~gvI~t~~~dA 410 (491)
T PLN02852 340 DLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKR-----G---PTGIIGTNLTCA 410 (491)
T ss_pred EEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEEeeeEec-----C---CCCeeeecHhhH
Confidence 68999999999998432 11222445567799999988777 8999999999996 2 133566788999
Q ss_pred HHHHHHHHHHhh
Q 023375 180 KYLFSLLNRIGK 191 (283)
Q Consensus 180 ~~~a~~i~~~~~ 191 (283)
..+|.+|...+.
T Consensus 411 ~~ta~~i~~d~~ 422 (491)
T PLN02852 411 EETVASIAEDLE 422 (491)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 80
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.12 E-value=7.6e-10 Score=97.19 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=75.5
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC------------CCCC-----CHHHHHHHHHHH
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQL 78 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~------------l~~~-----~~~~~~~~~~~l 78 (283)
+|+|||||++|+++|..|++.+ .+|+|||++.. .|.+ +.++..++.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--------------LKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 6999999999999999999876 89999997431 1333 257888889999
Q ss_pred HhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 79 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 79 ~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
++.|+++++.+|++++.+ .+.+++++++.+|.+|+|+|..|+
T Consensus 68 ~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 68 VKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred HHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 999999988778888765 466677889999999999999886
No 81
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.09 E-value=8e-10 Score=103.08 Aligned_cols=142 Identities=14% Similarity=0.177 Sum_probs=93.4
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
-+.++|+|||+|.+|+++|.+|+... .+|+++++....... ..+......+..+ .|
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~a--------------~~V~l~~r~~~~~~~---------~~~~~~~~~v~~~~~I 258 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKVA--------------KEVHIASRASESDTY---------EKLPVPQNNLWMHSEI 258 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHhC--------------CeEEEEEeecccccc---------ccCcCCCCceEECCcc
Confidence 36789999999999999999999887 899999886311110 1111123344555 56
Q ss_pred EEEeC-CeEEEcCCcEEEeeEEEEcCCCCCc-hhhhccC-CCCCCCCcc-ccCCCcccCC-CCCEEEeccccccCcCCCC
Q 023375 91 KDVDS-QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLD-LPKSPGGRI-GIDEWLRVPS-VQDVFAVGDCSGYLESTGK 165 (283)
Q Consensus 91 ~~v~~-~~v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~-l~~~~~g~i-~Vd~~l~~~~-~~~VfaiGD~a~~~~~~~~ 165 (283)
..+.+ +.|+++||+++++|.||+|||.+++ +++...+ +..+. +++ ....+.=.+. .|++..+|=...
T Consensus 259 ~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~-~~v~~Ly~~~f~~~~~p~LafiG~~~~------- 330 (461)
T PLN02172 259 DTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDE-NRVEPLYKHVFPPALAPGLSFIGLPAM------- 330 (461)
T ss_pred cceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCC-CcchhhHHhhcCCCCCCcEEEEecccc-------
Confidence 66544 4699999999999999999999998 6655432 22222 222 1222221223 489999995432
Q ss_pred cCCCcchHHHHHHHHHHHHHHH
Q 023375 166 TVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 166 ~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
......+..|++.+|+-+.
T Consensus 331 ---~~~f~~~E~Qa~~~a~v~s 349 (461)
T PLN02172 331 ---GIQFVMFEIQSKWVAAVLS 349 (461)
T ss_pred ---ccCchhHHHHHHHHHHHHc
Confidence 2234567889999887664
No 82
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.06 E-value=9.2e-10 Score=101.04 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=72.4
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC----CCCCHHHH---------HHHHHHHHh
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDDRLR---------HYATTQLSK 80 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l----~~~~~~~~---------~~~~~~l~~ 80 (283)
.++|||||||++|+++|..|++.+. +.+|+++++.... |.++.... ..-.+.+.+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~------------~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 70 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGF------------TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQE 70 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCC------------CCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHH
Confidence 4689999999999999999987652 2789999886322 22322211 011345677
Q ss_pred CCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 81 SGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 81 ~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.||+++.+ .|..++.+ .|++++|+++.||.+|+|||.+|.
T Consensus 71 ~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 89999999 79888765 578888999999999999999986
No 83
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.94 E-value=4.6e-09 Score=95.23 Aligned_cols=94 Identities=22% Similarity=0.319 Sum_probs=72.3
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---CCCC---------HHHHHHHHHHHHhCCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSGV 83 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---~~~~---------~~~~~~~~~~l~~~gV 83 (283)
+|||||||++|+.+|..|.+.. .++.+|+||+++... +.++ +++.....+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 5899999999999999886532 123899999986321 2211 2233345566778899
Q ss_pred EEEeCceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 84 RLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 84 ~v~~~~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+++.++|++|+.+ .|.+++|++++||.+|+|||.++.
T Consensus 70 ~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 70 RFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred EEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC
Confidence 9998899999754 688899989999999999999987
No 84
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.90 E-value=2.2e-08 Score=89.29 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=73.3
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-----------------------------
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL----------------------------- 63 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l----------------------------- 63 (283)
...|+||||||+|+-+|..+++.+ .+|+|||.+ ++.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G--------------~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~ 68 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAG--------------RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGN 68 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcC--------------CEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCc
Confidence 357999999999999999999887 788888875 331
Q ss_pred ------------------------------------CC--CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEE
Q 023375 64 ------------------------------------SS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLIL 100 (283)
Q Consensus 64 ------------------------------------~~--~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~ 100 (283)
|. -...+.+.+.+.+++.||+++++ +|.+|+.+ .+.+
T Consensus 69 ~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t 148 (408)
T COG2081 69 GHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT 148 (408)
T ss_pred chHHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEc
Confidence 10 01245666778889999999999 89999876 3666
Q ss_pred cCCcEEEeeEEEEcCCCCCc
Q 023375 101 NDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 101 ~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+|+++.||.+|+|+|-...
T Consensus 149 ~~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 149 SSGETVKCDSLILATGGKSW 168 (408)
T ss_pred CCCCEEEccEEEEecCCcCC
Confidence 78889999999999995443
No 85
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.88 E-value=2.9e-08 Score=91.40 Aligned_cols=157 Identities=17% Similarity=0.148 Sum_probs=105.7
Q ss_pred EEEccCcHHHHHH-HHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe
Q 023375 18 VVVGGGPTGVEFS-GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD 94 (283)
Q Consensus 18 vVvGgG~~Gve~A-~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~ 94 (283)
+|++.|..|+|.+ ..++++... -+.+|++++.. +.+|.+ ++.+.+.+.+++.|++++++ +|.+++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~----------LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEA----------LGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHHH----------HCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 6899999999999 445432110 12899999876 677764 78889999999999999999 888886
Q ss_pred C--CeE---EEcCC--cEEEeeEEEEcCCCCCch-hhhc--------cCCCC--C-------------C----CCccccC
Q 023375 95 S--QKL---ILNDG--TEVPYGLLVWSTGVGPST-LVKS--------LDLPK--S-------------P----GGRIGID 139 (283)
Q Consensus 95 ~--~~v---~~~~g--~~i~~d~vi~a~G~~~~~-~~~~--------~~l~~--~-------------~----~g~i~Vd 139 (283)
. +.+ ...++ .++.+|.+|+|+|..... +..+ +++++ . . +-.+.+|
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d 366 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD 366 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC
Confidence 3 333 23344 358999999999987653 2110 12221 0 0 1136777
Q ss_pred CCccc------CCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375 140 EWLRV------PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 189 (283)
Q Consensus 140 ~~l~~------~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~ 189 (283)
+.|+. +..+|+||+|++..-.++... -.. .-+|+..|-.+|++|...
T Consensus 367 ~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~--~~g-~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 367 ATLRPLDSQGGPVIENLYAAGAVLGGYDPIRE--GCG-SGVALATALHAAEQIAEE 419 (422)
T ss_pred CCcCcccCCCCeeccceEEeeehhcCCchHHh--CCC-chhHHHHHHHHHHHHHHh
Confidence 77775 247999999999975553110 011 127889999999988754
No 86
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.88 E-value=1.1e-08 Score=95.30 Aligned_cols=94 Identities=22% Similarity=0.443 Sum_probs=70.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC-------CCCC-----C--HHHHHHHHHHHHh
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-------LSSF-----D--DRLRHYATTQLSK 80 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~-------l~~~-----~--~~~~~~~~~~l~~ 80 (283)
++|||||||++|+++|..|+++.. +.+|+||++++. +|.+ + .++.....+.+++
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~------------~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNK------------ELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIK 68 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCC------------CCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHH
Confidence 479999999999999999987642 279999998732 2211 1 1233344566888
Q ss_pred CCCEEEeC-ceEEEeCC--eEEEcC---CcEEE--eeEEEEcCCCCCc
Q 023375 81 SGVRLVRG-IVKDVDSQ--KLILND---GTEVP--YGLLVWSTGVGPS 120 (283)
Q Consensus 81 ~gV~v~~~-~V~~v~~~--~v~~~~---g~~i~--~d~vi~a~G~~~~ 120 (283)
.||+++.+ +|++|+.+ .|.+.+ ++++. ||.+|+|||.+|.
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 99999988 89998754 566654 56666 9999999999986
No 87
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.87 E-value=1.2e-08 Score=94.63 Aligned_cols=97 Identities=25% Similarity=0.333 Sum_probs=72.0
Q ss_pred HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---CCC---------CHHHHHHHHHH
Q 023375 10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSF---------DDRLRHYATTQ 77 (283)
Q Consensus 10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---~~~---------~~~~~~~~~~~ 77 (283)
.+...++|||||||++|+.+|..|... +.+|+||++.+.. |.+ ...+...+.+.
T Consensus 6 ~~~~~~~vVIvGgG~aGl~~a~~L~~~--------------~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 71 (424)
T PTZ00318 6 ARLKKPNVVVLGTGWAGAYFVRNLDPK--------------KYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPA 71 (424)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHhCcC--------------CCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHH
Confidence 345668999999999999998877432 2899999986321 221 12233344566
Q ss_pred HHhCCCEEEeCceEEEeCC--eEEE----------cCCcEEEeeEEEEcCCCCCc
Q 023375 78 LSKSGVRLVRGIVKDVDSQ--KLIL----------NDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 78 l~~~gV~v~~~~V~~v~~~--~v~~----------~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+++++.++|++|+.+ .|++ ++|++++||.+|+|+|..+.
T Consensus 72 ~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 72 LAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred hccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 7778999988899999764 5766 45678999999999999986
No 88
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.83 E-value=1.5e-08 Score=91.92 Aligned_cols=96 Identities=27% Similarity=0.437 Sum_probs=76.2
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCC-CCC---------CHHHHHHHHHHHHhC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EIL-SSF---------DDRLRHYATTQLSKS 81 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l-~~~---------~~~~~~~~~~~l~~~ 81 (283)
.++|||||||+.|+++|..|....+ +.+|+||++. .++ |.+ +.+....+.+.+++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~------------~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~ 70 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLP------------DVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKS 70 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCC------------CCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhccc
Confidence 5799999999999999999986531 3899999986 232 222 234455566777756
Q ss_pred C-CEEEeCceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCch
Q 023375 82 G-VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST 121 (283)
Q Consensus 82 g-V~v~~~~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~~ 121 (283)
+ |+++.++|++|+.+ .|+++++.+++||.+|+++|..++.
T Consensus 71 ~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 71 GNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred CceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc
Confidence 5 99999999999765 7999998889999999999999984
No 89
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.82 E-value=3.6e-08 Score=93.44 Aligned_cols=89 Identities=13% Similarity=0.242 Sum_probs=50.4
Q ss_pred ceEEEeCCeEEEcCCcEE-EeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccC--CCCCEEEeccccccCcCCC
Q 023375 89 IVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVP--SVQDVFAVGDCSGYLESTG 164 (283)
Q Consensus 89 ~V~~v~~~~v~~~~g~~i-~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~--~~~~VfaiGD~a~~~~~~~ 164 (283)
.|+++++++|+++||+++ ++|.||+|||.+.. +++.+.-+... ++.+....++=.+ .+|++..+|=+..
T Consensus 301 ~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~-~~~~~LYk~vfp~~~~~ptLafIG~~~~------ 373 (531)
T PF00743_consen 301 DIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVD-DNRVRLYKHVFPPNLDHPTLAFIGLVQP------ 373 (531)
T ss_dssp -EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S--SSSSSEETTTEETETTSTTEEESS-SBS------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc------
Confidence 467778889999999875 69999999999887 77765433332 3344444433221 4588999996542
Q ss_pred CcCCCcchHHHHHHHHHHHHHHH
Q 023375 165 KTVLPALAQVAERQGKYLFSLLN 187 (283)
Q Consensus 165 ~~~~p~~~~~A~~qg~~~a~~i~ 187 (283)
.-.....+..|++++|+-+.
T Consensus 374 ---~g~~fp~~ElQArw~a~v~s 393 (531)
T PF00743_consen 374 ---FGSIFPIFELQARWAARVFS 393 (531)
T ss_dssp ---SS-HHHHHHHHHHHHHHHHT
T ss_pred ---cccccccccccccccccccc
Confidence 12234567788888877553
No 90
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.82 E-value=3.7e-08 Score=91.82 Aligned_cols=92 Identities=22% Similarity=0.318 Sum_probs=71.4
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCC------CC---------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FD--------------------- 67 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~------~~--------------------- 67 (283)
-.|+||||||.|+++|..+++++ .+|+|+|+..+... .|
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G--------------~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 68 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAANHG--------------AKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYG 68 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcC
Confidence 36999999999999999999988 89999997432110 00
Q ss_pred ---------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE-cCCcEEEeeEEEEcCCCCCc
Q 023375 68 ---------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 68 ---------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~-~~g~~i~~d~vi~a~G~~~~ 120 (283)
.++.+..++.+++.||+++.+++..++.+.+.. .+|+++.+|.+|+|||.+|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 69 WTVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCC
Confidence 123344556677889999988888888876655 46778999999999999986
No 91
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.79 E-value=5.3e-08 Score=92.40 Aligned_cols=95 Identities=15% Similarity=0.248 Sum_probs=76.9
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CCC-----------C-CCCHHHHHHHHH
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL-----------S-SFDDRLRHYATT 76 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~l-----------~-~~~~~~~~~~~~ 76 (283)
....+|+||||||+|+++|.++++.+ .+|++++.. ... + ...+++.+.+.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 275 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKG--------------LRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEE 275 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHH
Confidence 45679999999999999999999887 889998641 221 1 234677888888
Q ss_pred HHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 77 QLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 77 ~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+++.||+++.+ +|++++.+ .+.+++|+++.+|.+|+|+|..+.
T Consensus 276 ~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 276 HIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred HHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 899999999998 89888643 466678889999999999999875
No 92
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.78 E-value=1.5e-08 Score=93.91 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=104.3
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--C-CCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-ILSSFDDRLRHYATTQLSKSGVRLVRG-I 89 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 89 (283)
.++|+|||||.|++++|.....++. .+|+.+.+. . -....+........+...+.|++.... .
T Consensus 262 gk~vvVIGgG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~ 328 (457)
T COG0493 262 GKRVVVIGGGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQ 328 (457)
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCC
Confidence 3899999999999999988877762 578877532 2 222222222344445556667665443 3
Q ss_pred eEEEeC-----------CeEEEc--------------CC--cEEEeeEEEEcCCCCCchh--h-hccCCCCCCCCccccC
Q 023375 90 VKDVDS-----------QKLILN--------------DG--TEVPYGLLVWSTGVGPSTL--V-KSLDLPKSPGGRIGID 139 (283)
Q Consensus 90 V~~v~~-----------~~v~~~--------------~g--~~i~~d~vi~a~G~~~~~~--~-~~~~l~~~~~g~i~Vd 139 (283)
-.++.. ..+... .| .++++|+|+.+.|+.++.. . ...++..+..|++.++
T Consensus 329 ~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~ 408 (457)
T COG0493 329 PKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVD 408 (457)
T ss_pred ceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecc
Confidence 223221 111111 12 2578999999999988731 1 2225667888999999
Q ss_pred CCc-ccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHH
Q 023375 140 EWL-RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 189 (283)
Q Consensus 140 ~~l-~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~ 189 (283)
+.+ ++ +.|++|+.||+... ......|+.+|+.+|+.|...
T Consensus 409 ~~~~~t-s~~~vfa~gD~~~g---------~~~vv~ai~eGr~aak~i~~~ 449 (457)
T COG0493 409 ENLQQT-SIPGVFAGGDAVRG---------AALVVWAIAEGREAAKAIDKE 449 (457)
T ss_pred cccccc-cCCCeeeCceeccc---------hhhhhhHHhhchHHHHhhhHH
Confidence 998 66 89999999999962 567788999999999999843
No 93
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.78 E-value=3.8e-08 Score=91.58 Aligned_cols=94 Identities=13% Similarity=0.215 Sum_probs=66.7
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC---CC-CCCHHH----------HHH-HHHHHH
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LS-SFDDRL----------RHY-ATTQLS 79 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~---l~-~~~~~~----------~~~-~~~~l~ 79 (283)
++|||||||+.|+.+|..|++.. ++.+|+||++++. .+ .++.-+ ... .++..+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~------------~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 69 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLD------------KESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYD 69 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhC------------CCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHH
Confidence 58999999999999999998653 2389999998732 11 111111 111 123335
Q ss_pred hCCCEEEeC-ceEEEeCC--eEEEcCC---c--EEEeeEEEEcCCCCCc
Q 023375 80 KSGVRLVRG-IVKDVDSQ--KLILNDG---T--EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 80 ~~gV~v~~~-~V~~v~~~--~v~~~~g---~--~i~~d~vi~a~G~~~~ 120 (283)
+.||+++.+ +|++|+.+ .|.+.++ + +++||.+|+|||.+|+
T Consensus 70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 679999987 89999865 5666543 2 4789999999999987
No 94
>PRK06116 glutathione reductase; Validated
Probab=98.77 E-value=4.7e-08 Score=91.26 Aligned_cols=91 Identities=26% Similarity=0.433 Sum_probs=70.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCCH--------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD-------------------- 68 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~~-------------------- 68 (283)
-.|+||||||.|+.+|..+++.+ .+|+|||++.+.. .+|.
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G--------------~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~ 70 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYG--------------AKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGY 70 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhc
Confidence 47999999999999999999987 8999999753310 0000
Q ss_pred -----------------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 69 -----------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 69 -----------------------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+.+...+.+.+.||+++.++++.++...|++ +|+++.+|.+|+|||.+|.
T Consensus 71 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~ 144 (450)
T PRK06116 71 GFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPS 144 (450)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence 01122334466789999999877888888888 7788999999999999986
No 95
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.77 E-value=7.3e-08 Score=94.60 Aligned_cols=77 Identities=22% Similarity=0.376 Sum_probs=62.5
Q ss_pred cEEEeeEEEEcCCCCCc--hhhhccCCCCCCCCccccC-CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHH
Q 023375 104 TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 180 (283)
Q Consensus 104 ~~i~~d~vi~a~G~~~~--~~~~~~~l~~~~~g~i~Vd-~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~ 180 (283)
+.+++|+||++.|+..+ ...++++++.++++.|..- +.+.+ +.+.|||+|||-. | ......|+++|+
T Consensus 2040 e~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrr-----g----qslvvwai~egr 2109 (2142)
T KOG0399|consen 2040 EIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRR-----G----QSLVVWAIQEGR 2109 (2142)
T ss_pred eeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccc-cccceeecccccC-----C----ceEEEEEehhhh
Confidence 36899999999999877 4667788888888776664 55666 8999999999986 2 456778999999
Q ss_pred HHHHHHHHHh
Q 023375 181 YLFSLLNRIG 190 (283)
Q Consensus 181 ~~a~~i~~~~ 190 (283)
.+|+.+....
T Consensus 2110 q~a~~vd~~~ 2119 (2142)
T KOG0399|consen 2110 QAARQVDELM 2119 (2142)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 96
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.77 E-value=4.3e-08 Score=97.28 Aligned_cols=93 Identities=23% Similarity=0.373 Sum_probs=71.8
Q ss_pred EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC----CCC---------HHHHHHHHHHHHhCCC
Q 023375 17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFD---------DRLRHYATTQLSKSGV 83 (283)
Q Consensus 17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~----~~~---------~~~~~~~~~~l~~~gV 83 (283)
|||||||++|+++|.+|.+... .+.+|+||++.+..+ .++ +++.....+.+++.||
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~-----------~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNR-----------HMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCC-----------CCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCC
Confidence 6899999999999999987641 237999999863221 121 1222223566788999
Q ss_pred EEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 84 RLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 84 ~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+++++ +|++|+.+ .|++.+|++++||.+|+|||..|.
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC
Confidence 99999 89999865 688889999999999999999886
No 97
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.75 E-value=1e-07 Score=90.54 Aligned_cols=95 Identities=15% Similarity=0.224 Sum_probs=77.1
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CC--------CC----CCCHHHHHHHHH
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LS----SFDDRLRHYATT 76 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~--------l~----~~~~~~~~~~~~ 76 (283)
....+|+|||||++|+.+|.++++.+ .+|++++.. .. ++ ..+.++.+.+.+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 274 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKG--------------IRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEE 274 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHH
Confidence 34569999999999999999999887 888888752 11 11 134678888999
Q ss_pred HHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 77 QLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 77 ~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+++.|++++.+ +|.+++.+ .|.+.+|+++.+|.+|+|+|..+.
T Consensus 275 ~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 275 HVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred HHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 999999999988 89888654 466678889999999999999875
No 98
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.74 E-value=6.8e-08 Score=88.08 Aligned_cols=93 Identities=24% Similarity=0.291 Sum_probs=68.7
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC----CCCC---------HHHHH-HHHHHHHh
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFD---------DRLRH-YATTQLSK 80 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l----~~~~---------~~~~~-~~~~~l~~ 80 (283)
++|||||||++|+.+|..|.+..+ +.+|++|++.... |.++ .++.. ...+.+++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~------------~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 70 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDA------------HIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQ 70 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCc------------CCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHh
Confidence 589999999999999999976542 3899999875211 2221 12222 23455677
Q ss_pred CCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 81 SGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 81 ~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.||+++.+ +|++++.+ .|. .+++++.||.+|+|||.+|.
T Consensus 71 ~gv~~~~~~~V~~id~~~~~v~-~~~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 71 FNLRLFPHTWVTDIDAEAQVVK-SQGNQWQYDKLVLATGASAF 112 (377)
T ss_pred CCCEEECCCEEEEEECCCCEEE-ECCeEEeCCEEEECCCCCCC
Confidence 89999988 89999865 355 46778999999999999886
No 99
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.74 E-value=8.7e-08 Score=95.47 Aligned_cols=96 Identities=20% Similarity=0.312 Sum_probs=72.9
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC----CC--------CHHHHHHHHHHHHhCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SF--------DDRLRHYATTQLSKSG 82 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~----~~--------~~~~~~~~~~~l~~~g 82 (283)
++|||||+|++|+.+|..|.+... .++.+|++|++.+.++ .+ .+++.....+.+++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~----------~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~g 73 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD----------AANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHG 73 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC----------CCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCC
Confidence 589999999999999999986531 1238999998863322 11 1222333346678899
Q ss_pred CEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 83 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 83 V~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
|+++.+ +|.+++.+ .|.+.+|++++||.+|+|||..|.
T Consensus 74 I~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 74 IKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred CEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC
Confidence 999999 79999765 577788889999999999999886
No 100
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.74 E-value=5.7e-07 Score=77.67 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=100.7
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------C------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------S------------------ 65 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------~------------------ 65 (283)
..|+|||||++|+-+|.+|++.+ .+|+++|+. .+.. .
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G--------------~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~ 91 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAG--------------LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRY 91 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCc
Confidence 58999999999999999999876 889999875 3210 0
Q ss_pred ----------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC-e---EEEc-----------CCcEEEeeEEEEcCCC
Q 023375 66 ----------FDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ-K---LILN-----------DGTEVPYGLLVWSTGV 117 (283)
Q Consensus 66 ----------~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~-~---v~~~-----------~g~~i~~d~vi~a~G~ 117 (283)
.+..+...+.+...+.|++++.+ +|.++. ++ . +... +..++.++.||.|+|.
T Consensus 92 ~~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 92 KEVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred eeecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence 01234444556667789999998 787764 33 2 2221 2247899999999997
Q ss_pred CCch---hhhccC---CC--------CCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHH-HHHHHH
Q 023375 118 GPST---LVKSLD---LP--------KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE-RQGKYL 182 (283)
Q Consensus 118 ~~~~---~~~~~~---l~--------~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~-~qg~~~ 182 (283)
...- +.+..+ .. .+......|+.+-++ +|++|+.|=+++-.. | .|+..-..-++ ..|+.+
T Consensus 172 ~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~--~-~~rmg~~fg~m~~sg~~~ 246 (257)
T PRK04176 172 DAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVH--G-LPRMGPIFGGMLLSGKKV 246 (257)
T ss_pred CcHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhc--C-CCccCchhHhHHHhHHHH
Confidence 6651 212111 11 112224556666666 899999998775322 2 22222222333 679999
Q ss_pred HHHHHHHhh
Q 023375 183 FSLLNRIGK 191 (283)
Q Consensus 183 a~~i~~~~~ 191 (283)
|+.|...++
T Consensus 247 a~~~~~~~~ 255 (257)
T PRK04176 247 AELILEKLK 255 (257)
T ss_pred HHHHHHHhh
Confidence 998887664
No 101
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.70 E-value=4.1e-08 Score=91.84 Aligned_cols=88 Identities=23% Similarity=0.326 Sum_probs=68.4
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------CC--CCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------SS--FDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~~--~~~~~~~~~~~~l~~~ 81 (283)
...++|+|||||++|+++|..|++.+ .+|+++++. .+. |. ++.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g--------------~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKG--------------YDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 45679999999999999999999876 899999986 431 22 4667778888889999
Q ss_pred CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375 82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVG 118 (283)
Q Consensus 82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~ 118 (283)
||+++++ .+ ...+.+++.. +.+|.||+|||..
T Consensus 204 gv~~~~~~~v----~~~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 204 GVEIRTNTEV----GRDITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred CCEEEeCCEE----CCccCHHHHH-hhCCEEEEccCCC
Confidence 9999998 44 1223333333 7899999999986
No 102
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.70 E-value=1.1e-07 Score=78.76 Aligned_cols=89 Identities=24% Similarity=0.365 Sum_probs=62.6
Q ss_pred EEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccE-EEEEeCC-CCC--------------CC----------C-----
Q 023375 18 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL--------------SS----------F----- 66 (283)
Q Consensus 18 vVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~-V~li~~~-~~l--------------~~----------~----- 66 (283)
+|||||++|+.+|..|.+.+ .+ |+++|++ .+. |. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--------------~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--------------IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----------------EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCC--------------CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 69999999999999999887 56 8888875 431 11 0
Q ss_pred --------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 67 --------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 67 --------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+++.+++++..++.+++++++ +|++++.+ .|++++++++.+|.||+|+|....
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 1245678888889999999988 89988654 488888888999999999997433
No 103
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.67 E-value=1.8e-07 Score=87.11 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=67.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-CCCC-------CCH--------------H---
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS-------FDD--------------R--- 69 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~l~~-------~~~--------------~--- 69 (283)
-+|+||||||.|+++|..+++.+ .+|+|||+++ .+.. .|. .
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g--------------~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~ 69 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAG--------------KKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMA 69 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC--------------CEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHH
Confidence 47999999999999999999987 8999999863 2110 111 1
Q ss_pred --------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcC---CcEEEeeEEEEcCCCCCc
Q 023375 70 --------LRHYATTQLSKSGVRLVRGIVKDVDSQKLILND---GTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 --------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~---g~~i~~d~vi~a~G~~~~ 120 (283)
+.....+.+.+.||+++.+....++...|.+.+ ..++.+|.||+|||.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~ 131 (438)
T PRK07251 70 TKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSN 131 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCC
Confidence 112223456778999998865556667776653 247999999999999986
No 104
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.66 E-value=2e-07 Score=93.27 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=68.4
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CCC--CCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LSS--FDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~~--~~~~~~~~~~~~l~~~ 81 (283)
...++|+||||||+|+.+|..|++.+ .+|+|+|+. .+ .|. ++.+......+.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--------------~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--------------HPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 45689999999999999999999887 899999985 32 122 3455666666788889
Q ss_pred CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
||+++++ .+ . +.+++.....+|.||+|||..+.
T Consensus 603 GVe~~~gt~V-d-----i~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 603 GVKFEFGCSP-D-----LTVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred CCEEEeCcee-E-----EEhhhheeccCCEEEECcCCCCC
Confidence 9999999 55 2 23334445669999999999864
No 105
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.65 E-value=2.2e-07 Score=85.29 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=61.0
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------------------------C-----
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------------------------S----- 65 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------------------------~----- 65 (283)
+|+|||||++|+-+|..+++.+ .+|+|+|++ ++.. .
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g--------------~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~ 67 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKG--------------ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNP 67 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT----------------EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTT
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccch
Confidence 6899999999999999999877 889999887 4410 0
Q ss_pred -C--------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe---EEE
Q 023375 66 -F--------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LIL 100 (283)
Q Consensus 66 -~--------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~---v~~ 100 (283)
+ ..++.+.+.+.+++.||+++++ +|.++. ++. |.+
T Consensus 68 ~f~~~~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~ 147 (409)
T PF03486_consen 68 KFLKSALKRFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT 147 (409)
T ss_dssp TCTHHHHHHS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE
T ss_pred HHHHHHHhcCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec
Confidence 0 1244566777788999999999 899985 444 666
Q ss_pred cCCcEEEeeEEEEcCCCCCch
Q 023375 101 NDGTEVPYGLLVWSTGVGPST 121 (283)
Q Consensus 101 ~~g~~i~~d~vi~a~G~~~~~ 121 (283)
++++++.+|.||+|+|..+.+
T Consensus 148 ~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 148 KNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp TTTEEEEESEEEE----SSSG
T ss_pred cCcccccCCEEEEecCCCCcc
Confidence 678899999999999987643
No 106
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.64 E-value=9.9e-08 Score=96.01 Aligned_cols=90 Identities=24% Similarity=0.300 Sum_probs=72.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKSG 82 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~g 82 (283)
..++|+||||||+|+.+|..|++.+ ++|+++|+. .+. | .++.++.+...+.+++.|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G--------------~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~G 370 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEG--------------FPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLG 370 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhc
Confidence 4689999999999999999999887 999999985 322 3 346777788888899999
Q ss_pred CEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCC-Cc
Q 023375 83 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 120 (283)
Q Consensus 83 V~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~-~~ 120 (283)
|+++++ .+ +..+++++.....||.|++|+|.. |.
T Consensus 371 v~f~~n~~v----G~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 371 GRFVKNFVV----GKTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred CeEEEeEEe----ccEEeHHHhccccCCEEEEeCCCCCCC
Confidence 999998 43 234666665566799999999995 54
No 107
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.64 E-value=3.1e-07 Score=86.32 Aligned_cols=94 Identities=19% Similarity=0.294 Sum_probs=69.0
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCCH-------------------
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD------------------- 68 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~~------------------- 68 (283)
..+++||||||.|+.+|..+++++ .+|+|||++.+.. ..|.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G--------------~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~ 69 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLG--------------LKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPF 69 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999987 8999999754210 0000
Q ss_pred ------------H-----------HHHHHHHHHHhCCCEEEeCceEEEeCC-------eE--EEcCC--cEEEeeEEEEc
Q 023375 69 ------------R-----------LRHYATTQLSKSGVRLVRGIVKDVDSQ-------KL--ILNDG--TEVPYGLLVWS 114 (283)
Q Consensus 69 ------------~-----------~~~~~~~~l~~~gV~v~~~~V~~v~~~-------~v--~~~~g--~~i~~d~vi~a 114 (283)
. +.....+.+++.||+++.+.++.++.+ .+ .+.+| +++.+|.+|+|
T Consensus 70 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViA 149 (472)
T PRK05976 70 GISVSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIA 149 (472)
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEe
Confidence 0 112223446677999999987778776 44 44566 57999999999
Q ss_pred CCCCCch
Q 023375 115 TGVGPST 121 (283)
Q Consensus 115 ~G~~~~~ 121 (283)
||.+|..
T Consensus 150 TGs~p~~ 156 (472)
T PRK05976 150 TGSRPVE 156 (472)
T ss_pred CCCCCCC
Confidence 9999863
No 108
>PRK10262 thioredoxin reductase; Provisional
Probab=98.63 E-value=4.1e-07 Score=81.08 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=68.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC------------CC-----CCHHHHHHHH
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS-----FDDRLRHYAT 75 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l------------~~-----~~~~~~~~~~ 75 (283)
+.++|+||||||+|+++|..+++++ .++++|+..+.. |. ..+.+.+++.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g--------------~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMH 70 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--------------CCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHH
Confidence 4568999999999999999999877 677887642211 21 1234567777
Q ss_pred HHHHhCCCEEEeCceEEEeC--CeEEEc-CCcEEEeeEEEEcCCCCCc
Q 023375 76 TQLSKSGVRLVRGIVKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 76 ~~l~~~gV~v~~~~V~~v~~--~~v~~~-~g~~i~~d~vi~a~G~~~~ 120 (283)
+.....++++..++|.+|+. +.+++. +..++.+|.||+|+|..|+
T Consensus 71 ~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 71 EHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR 118 (321)
T ss_pred HHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC
Confidence 88888888888776666653 333332 2347899999999999986
No 109
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.62 E-value=7.3e-07 Score=83.32 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=69.1
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------------------------
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------------------------- 63 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------------------------- 63 (283)
...++|+|||||++|+.+|.+|.+.+ .+|+++|++ .+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G--------------~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~ 73 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREG--------------HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSV 73 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcC--------------CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhh
Confidence 44589999999999999999999876 778887763 210
Q ss_pred ------------------CC---------------CCHHHHHHHHHHHHhCCCE--EEeC-ceEEEeCC----eEEEcCC
Q 023375 64 ------------------SS---------------FDDRLRHYATTQLSKSGVR--LVRG-IVKDVDSQ----KLILNDG 103 (283)
Q Consensus 64 ------------------~~---------------~~~~~~~~~~~~l~~~gV~--v~~~-~V~~v~~~----~v~~~~g 103 (283)
|. -..++.+++++..+..|++ +.++ +|++|+.. .|++.++
T Consensus 74 Y~~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~ 153 (461)
T PLN02172 74 YESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNS 153 (461)
T ss_pred hhhhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcC
Confidence 10 0145777888888888988 7788 89998753 3555432
Q ss_pred --c--EEEeeEEEEcCCC--CCc
Q 023375 104 --T--EVPYGLLVWSTGV--GPS 120 (283)
Q Consensus 104 --~--~i~~d~vi~a~G~--~~~ 120 (283)
. +..+|.||+|+|. .|+
T Consensus 154 ~~~~~~~~~d~VIvAtG~~~~P~ 176 (461)
T PLN02172 154 GGFSKDEIFDAVVVCNGHYTEPN 176 (461)
T ss_pred CCceEEEEcCEEEEeccCCCCCc
Confidence 2 4579999999995 454
No 110
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.61 E-value=3e-06 Score=73.02 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=99.7
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC----------CC-----------------
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL----------SS----------------- 65 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l----------~~----------------- 65 (283)
...|+|||||++|+-+|..|++.+ .+|+++|+. .+. +.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G--------------~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~ 86 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNG--------------LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR 86 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC
Confidence 458999999999999999999876 888999886 321 00
Q ss_pred -----------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC-----eEEEc-----------CCcEEEeeEEEEcC
Q 023375 66 -----------FDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ-----KLILN-----------DGTEVPYGLLVWST 115 (283)
Q Consensus 66 -----------~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~-----~v~~~-----------~g~~i~~d~vi~a~ 115 (283)
...++.+.+.+...+.|++++.+ .|.++. ++ +|.+. +..++.++.||.||
T Consensus 87 ~~~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdAT 166 (254)
T TIGR00292 87 YEDEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDAT 166 (254)
T ss_pred eeeccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEee
Confidence 01234455556667889999988 787764 22 34332 22478999999999
Q ss_pred CCCCc--h-hhhccCCCCCC-------------CCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHH-HH
Q 023375 116 GVGPS--T-LVKSLDLPKSP-------------GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE-RQ 178 (283)
Q Consensus 116 G~~~~--~-~~~~~~l~~~~-------------~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~-~q 178 (283)
|.... . +.+..++.... .-...|+.+-++ +|++|+.|=.++-.. | .|+..-..-++ ..
T Consensus 167 G~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~--~-~~rmgp~fg~m~~s 241 (254)
T TIGR00292 167 GHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVH--G-LPRMGPIFGGMLLS 241 (254)
T ss_pred cCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhc--C-CCCcCchHHHHHHh
Confidence 97654 2 22333322111 112444455555 899999998765221 2 22222222333 57
Q ss_pred HHHHHHHHHHHh
Q 023375 179 GKYLFSLLNRIG 190 (283)
Q Consensus 179 g~~~a~~i~~~~ 190 (283)
|+.+|+.|...+
T Consensus 242 g~~~a~~~~~~~ 253 (254)
T TIGR00292 242 GKHVAEQILEKL 253 (254)
T ss_pred hHHHHHHHHHHh
Confidence 999998876554
No 111
>PRK06847 hypothetical protein; Provisional
Probab=98.61 E-value=5.9e-07 Score=81.64 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 68 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
..+.+.+.+.+.+.|++++.+ +|++++.+ .+.+.+|+++.+|.||.|.|..+.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 355666777777889999999 88888643 366778999999999999998775
No 112
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.61 E-value=3.6e-07 Score=85.34 Aligned_cols=91 Identities=22% Similarity=0.360 Sum_probs=67.0
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------CC--------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS-------------------- 65 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~~-------------------- 65 (283)
-.|+||||||.|+++|..+++.+ .+|+|||+..+. |.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 68 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHG--------------AKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYG 68 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcC
Confidence 47999999999999999999987 899999974321 10
Q ss_pred --------CC-H-----------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 66 --------FD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 66 --------~~-~-----------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
++ + .+.+.....+++.||+++.+...-.+++.|.+ +++++.+|.+|+|||.+|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 69 FYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPS 142 (450)
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence 00 0 12223445577789999998543345556665 5678999999999999986
No 113
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=4.4e-07 Score=85.04 Aligned_cols=92 Identities=21% Similarity=0.373 Sum_probs=68.7
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCC---------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFD--------------------- 67 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~--------------------- 67 (283)
-+|+||||||.|+.+|..+++.+ .+|.++|+..+.. ..|
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g 70 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLG--------------LKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFG 70 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcC
Confidence 57999999999999999999987 8999999754211 001
Q ss_pred ----------HHHHHH-----------HHHHHHhCCCEEEeCceEEEeCCeEEEc--C-CcEEEeeEEEEcCCCCCc
Q 023375 68 ----------DRLRHY-----------ATTQLSKSGVRLVRGIVKDVDSQKLILN--D-GTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 68 ----------~~~~~~-----------~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~-g~~i~~d~vi~a~G~~~~ 120 (283)
.++.++ +...+++.||+++.++++.++++.+... + ++++.+|.+|+|||.+|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~ 147 (462)
T PRK06416 71 IKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPR 147 (462)
T ss_pred cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCC
Confidence 111222 3345667899999997777777766654 3 368999999999999986
No 114
>PLN02463 lycopene beta cyclase
Probab=98.58 E-value=4.8e-07 Score=84.12 Aligned_cols=102 Identities=25% Similarity=0.447 Sum_probs=72.7
Q ss_pred CCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC--CCCC-C--------------
Q 023375 4 AGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSS-F-------------- 66 (283)
Q Consensus 4 ~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~--~l~~-~-------------- 66 (283)
|..|+ .+....+|+|||||++|+.+|..|++.+ .+|.++|+.. ..|. .
T Consensus 19 ~~~~~-~~~~~~DVvIVGaGpAGLalA~~La~~G--------------l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~ 83 (447)
T PLN02463 19 PRFDP-SKSRVVDLVVVGGGPAGLAVAQQVSEAG--------------LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLD 83 (447)
T ss_pred cCCCC-ccccCceEEEECCCHHHHHHHHHHHHCC--------------CeEEEeccCccchhccccchHHHHHHHCCcHH
Confidence 33444 2344469999999999999999999766 7788887642 1111 0
Q ss_pred -----------------------------CHHHHHHHHHHHHhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEE
Q 023375 67 -----------------------------DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVW 113 (283)
Q Consensus 67 -----------------------------~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~ 113 (283)
...+.+.+.+.+.+.||+++..+|++|+.+ .|++++|+++.+|.||.
T Consensus 84 ~l~~~w~~~~v~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~ 163 (447)
T PLN02463 84 CLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLD 163 (447)
T ss_pred HHHhhCCCcEEEEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEE
Confidence 122334555556678999986688888643 47778898999999999
Q ss_pred cCCCCCc
Q 023375 114 STGVGPS 120 (283)
Q Consensus 114 a~G~~~~ 120 (283)
|+|..+.
T Consensus 164 AdG~~s~ 170 (447)
T PLN02463 164 ATGFSRC 170 (447)
T ss_pred CcCCCcC
Confidence 9998764
No 115
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.6e-06 Score=75.23 Aligned_cols=93 Identities=24% Similarity=0.379 Sum_probs=72.4
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccE-EEEEeCCCC------------CC-----CCCHHHHHHHH
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEI------------LS-----SFDDRLRHYAT 75 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~-V~li~~~~~------------l~-----~~~~~~~~~~~ 75 (283)
...|+||||||+|+.+|.++++.+ .+ +.+++.... .| ...+++.+...
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~ 68 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMK 68 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHH
Confidence 357999999999999999999876 45 555554211 11 24578888888
Q ss_pred HHHHhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCch
Q 023375 76 TQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST 121 (283)
Q Consensus 76 ~~l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~ 121 (283)
+.....++++....|.+++.. .|.+++++ +.++.||+|||..+..
T Consensus 69 ~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 69 EQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred HHHhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence 888899999998878888765 46666776 9999999999998873
No 116
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.54 E-value=8.1e-07 Score=85.08 Aligned_cols=91 Identities=21% Similarity=0.325 Sum_probs=70.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC------------CC----CCHHHHHHHHHHH
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS----FDDRLRHYATTQL 78 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l------------~~----~~~~~~~~~~~~l 78 (283)
..|+||||||+|+.+|..|++.+ .+|+|||++++. |. .++.+.+++.+.+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g--------------~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~ 70 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAK--------------LDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQA 70 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHH
Confidence 58999999999999999999876 899999975321 11 1246677777888
Q ss_pred HhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 79 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 79 ~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
++.|++++...|++++.+ .+.+.++ ++.++.+|+|||..|.
T Consensus 71 ~~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 71 QDFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred HHcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 889999976678887643 2444444 6899999999999886
No 117
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.54 E-value=2.2e-07 Score=86.77 Aligned_cols=91 Identities=23% Similarity=0.298 Sum_probs=68.8
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~--~~~~~~~~~~~~~l~~~ 81 (283)
...++|+|||||++|+++|..|++.+ .+|+++++. .+ .| .++.++.....+.+++.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 196 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAG--------------HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKL 196 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhC
Confidence 34579999999999999999999876 899999985 33 12 25667777777889999
Q ss_pred CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCC-CCc
Q 023375 82 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 120 (283)
Q Consensus 82 gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~-~~~ 120 (283)
||+++++.+. ...+.+++. ...+|.||+|+|. .|.
T Consensus 197 gv~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 197 GVTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred CcEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 9999998421 223444333 3469999999998 454
No 118
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.54 E-value=9.7e-07 Score=82.83 Aligned_cols=92 Identities=23% Similarity=0.391 Sum_probs=67.7
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCCH--------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD-------------------- 68 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~~-------------------- 68 (283)
++++|||+|+.|+++|..+++.+ .+|++||++++-. ..|.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g--------------~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g 67 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLG--------------ADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELG 67 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999999887 8999999754210 0000
Q ss_pred --------------H-----------HHHHHHHHHHhCCCEEEeCceEE----EeCCeEEE--cCCc--EEEeeEEEEcC
Q 023375 69 --------------R-----------LRHYATTQLSKSGVRLVRGIVKD----VDSQKLIL--NDGT--EVPYGLLVWST 115 (283)
Q Consensus 69 --------------~-----------~~~~~~~~l~~~gV~v~~~~V~~----v~~~~v~~--~~g~--~i~~d~vi~a~ 115 (283)
. +.+...+.+++.||+++.++++. ++++.++. .+|+ ++.+|.||+||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViAT 147 (466)
T PRK07845 68 IRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIAT 147 (466)
T ss_pred cccccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcC
Confidence 0 12234455777899999996655 55565544 4665 79999999999
Q ss_pred CCCCc
Q 023375 116 GVGPS 120 (283)
Q Consensus 116 G~~~~ 120 (283)
|.+|.
T Consensus 148 Gs~p~ 152 (466)
T PRK07845 148 GASPR 152 (466)
T ss_pred CCCCC
Confidence 99986
No 119
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.53 E-value=1.2e-06 Score=82.05 Aligned_cols=92 Identities=23% Similarity=0.344 Sum_probs=68.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------CCCHH------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------SFDDR------------------ 69 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------~~~~~------------------ 69 (283)
..|+|||||++|+.+|..|++.+ .+|++||+. .+.. ..+.+
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G--------------~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~ 71 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLG--------------KRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLY 71 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhh
Confidence 57999999999999999999987 899999985 4321 01110
Q ss_pred ------------------------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCCc--EEEeeEEEEcCCCCCc
Q 023375 70 ------------------------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ------------------------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g~--~i~~d~vi~a~G~~~~ 120 (283)
..+...+.+++.||+++.+++..++.+.++. .+|+ ++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 72 SSYRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPY 150 (461)
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence 1122334567789999998776677776544 4554 7899999999999986
No 120
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.52 E-value=7.6e-07 Score=82.92 Aligned_cols=92 Identities=17% Similarity=0.313 Sum_probs=65.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-------CCCHH-----------H-----
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-------SFDDR-----------L----- 70 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~-------~~~~~-----------~----- 70 (283)
-.|+|||||+.|+.+|..|++.+ .+|+|||++ ..+. .++.. .
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g--------------~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~ 69 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAG--------------WRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQ 69 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCC--------------CeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHH
Confidence 47999999999999999999887 899999986 2211 11111 0
Q ss_pred -----HHHH----HHHHHh-CCCEEEeCceEEEeCCeEE--EcCCc-EEEeeEEEEcCCCCCc
Q 023375 71 -----RHYA----TTQLSK-SGVRLVRGIVKDVDSQKLI--LNDGT-EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 71 -----~~~~----~~~l~~-~gV~v~~~~V~~v~~~~v~--~~~g~-~i~~d~vi~a~G~~~~ 120 (283)
.+.+ .+.+.+ .||+++.+++..++.+.+. ..+++ ++.+|.+|+|||.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~ 132 (441)
T PRK08010 70 RKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV 132 (441)
T ss_pred HHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC
Confidence 0111 122333 3899998887778777554 45664 6999999999999986
No 121
>PRK06370 mercuric reductase; Validated
Probab=98.51 E-value=1.2e-06 Score=82.22 Aligned_cols=91 Identities=20% Similarity=0.298 Sum_probs=67.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCCH--------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD-------------------- 68 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~~-------------------- 68 (283)
..|+||||||.|+++|..+++.+ .+|+|||+..+.. ..|.
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G--------------~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 71 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLG--------------MKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYG 71 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999987 8999999753211 0010
Q ss_pred ------------H-----------HHHHHHHHHHhC-CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 69 ------------R-----------LRHYATTQLSKS-GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 69 ------------~-----------~~~~~~~~l~~~-gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
. +.......+++. ||+++.+....++++.|++ +++++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~ 146 (463)
T PRK06370 72 VSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAA 146 (463)
T ss_pred cccCccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCC
Confidence 0 112334456666 9999988544556667776 4678999999999999987
No 122
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.50 E-value=1.5e-06 Score=78.77 Aligned_cols=88 Identities=28% Similarity=0.425 Sum_probs=64.3
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCC-----CCC----------------------
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EIL-----SSF---------------------- 66 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l-----~~~---------------------- 66 (283)
+|+|||||.+|+|+|..+++.+ .+|.|+... .+. |.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--------------~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--------------AKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----------------EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 5899999999999999999998 899999543 221 110
Q ss_pred --------------------------C-HHHHHHHHHHHHh-CCCEEEeCceEEEeC--C---eEEEcCCcEEEeeEEEE
Q 023375 67 --------------------------D-DRLRHYATTQLSK-SGVRLVRGIVKDVDS--Q---KLILNDGTEVPYGLLVW 113 (283)
Q Consensus 67 --------------------------~-~~~~~~~~~~l~~-~gV~v~~~~V~~v~~--~---~v~~~~g~~i~~d~vi~ 113 (283)
+ ......+.+.+++ .+++++.++|+++.. + +|.+.+|+++.+|.||+
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEE
Confidence 0 2345566677776 689998778988853 2 68889999999999999
Q ss_pred cCCC
Q 023375 114 STGV 117 (283)
Q Consensus 114 a~G~ 117 (283)
|||.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9998
No 123
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.48 E-value=1.5e-06 Score=81.70 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=66.9
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------CCCH-------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------SFDD------------------- 68 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------~~~~------------------- 68 (283)
..|+|||||+.|+.+|..+++.+ .+|+|||+. .+.. .+|.
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G--------------~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~ 70 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLG--------------LETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEH 70 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhc
Confidence 58999999999999999999987 899999975 3321 1111
Q ss_pred ------------HHH-----------HHHHHHHHhCCCEEEeCceEEEeCCeEEEc--CC--cEEEeeEEEEcCCCCCc
Q 023375 69 ------------RLR-----------HYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG--TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 69 ------------~~~-----------~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g--~~i~~d~vi~a~G~~~~ 120 (283)
++. ......+++.||+++.+...-++++.+.+. +| +++.+|.+|+|||.+|.
T Consensus 71 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 71 GIVFGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 111 111233566799999886666677766553 55 47999999999999986
No 124
>PRK12831 putative oxidoreductase; Provisional
Probab=98.48 E-value=3.5e-07 Score=85.65 Aligned_cols=91 Identities=22% Similarity=0.401 Sum_probs=67.5
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC---C----CC--CCH-HHHHHHHHHHHh
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI---L----SS--FDD-RLRHYATTQLSK 80 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~---l----~~--~~~-~~~~~~~~~l~~ 80 (283)
...++|+||||||+|+++|..|++.+ .+|+++|+. .+ + |. ++. ++.....+.+++
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMG--------------YDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence 46689999999999999999999887 899999975 32 1 22 233 366666788899
Q ss_pred CCCEEEeC-ceEEEeCCeEEEcCC-cEEEeeEEEEcCCC-CCc
Q 023375 81 SGVRLVRG-IVKDVDSQKLILNDG-TEVPYGLLVWSTGV-GPS 120 (283)
Q Consensus 81 ~gV~v~~~-~V~~v~~~~v~~~~g-~~i~~d~vi~a~G~-~~~ 120 (283)
.||+++++ .+. ..+.+++. +++.+|.||+|+|. .|.
T Consensus 204 ~gv~i~~~~~v~----~~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 204 LGVKIETNVVVG----KTVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred cCCEEEcCCEEC----CcCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 99999998 442 22333332 34679999999998 454
No 125
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.48 E-value=3.9e-07 Score=90.34 Aligned_cols=92 Identities=23% Similarity=0.422 Sum_probs=70.2
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~--~~~~~~~~~~~~~l~~~ 81 (283)
...++|+|||||++|+.+|..|++.+ .+|+++++. .+ .| .++.++.+...+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRG--------------YDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 45679999999999999999999887 899999974 22 12 23566777777888999
Q ss_pred CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCC-CCc
Q 023375 82 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 120 (283)
Q Consensus 82 gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~-~~~ 120 (283)
||+++++... ...+++++..+..||.||+|+|. .|.
T Consensus 495 gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 495 GVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred CCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 9999998321 23444544445679999999998 455
No 126
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.47 E-value=1.1e-06 Score=82.28 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=68.1
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCC------CC----------------------
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FD---------------------- 67 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~------~~---------------------- 67 (283)
.|+||||||.|+.+|..+++.+ .+|+|||+..+... .|
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g--------------~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~ 67 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELG--------------ASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGL 67 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccc
Confidence 5899999999999999999987 89999997432211 00
Q ss_pred ---------------HHHHHH-----HHHHHHhCCCEEEeCceEEEeCCeEEEcCCc-EEEeeEEEEcCCCCCc
Q 023375 68 ---------------DRLRHY-----ATTQLSKSGVRLVRGIVKDVDSQKLILNDGT-EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 68 ---------------~~~~~~-----~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~-~i~~d~vi~a~G~~~~ 120 (283)
.++.+. ..+.+++.||+++.+++..+++..|.+++|+ .+.+|.+|+|||.+|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~ 141 (463)
T TIGR02053 68 AATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPA 141 (463)
T ss_pred cCCCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCC
Confidence 011111 2345677899999887766777788887764 6899999999999986
No 127
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.47 E-value=8.2e-07 Score=89.21 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=66.3
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~--~~~~~~~~~~~~~l~~~ 81 (283)
...++|+||||||+|+.+|..|++.+ .+|+|+|+. .+ .| .++.+......+.+.+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G--------------~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~ 600 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAG--------------HPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFH 600 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhc
Confidence 34579999999999999999999887 899999985 32 12 23455666666778889
Q ss_pred CCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 82 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 82 gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
||+++++.-. .+.+++.....+|.||+|+|..+.
T Consensus 601 GVe~~~g~~~-----d~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 601 GVEFKYGCSP-----DLTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred CcEEEEeccc-----ceEhhhhhcccccEEEECCCCCCC
Confidence 9999987211 122333345669999999999754
No 128
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.45 E-value=5.1e-07 Score=81.61 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=64.2
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC---------CCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------FDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~---------~~~~~~~~~~~~l~~~ 81 (283)
+..++|+|||+|++|+++|..|++.+ .+|+++++. .+... .+.+......+.+.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLG--------------YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEA 81 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhC
Confidence 35579999999999999999999876 899999986 43211 2333334455667778
Q ss_pred CCEEEeC-ceEEEeC------CeEE--E--cCCcEEEeeEEEEcCCCC
Q 023375 82 GVRLVRG-IVKDVDS------QKLI--L--NDGTEVPYGLLVWSTGVG 118 (283)
Q Consensus 82 gV~v~~~-~V~~v~~------~~v~--~--~~g~~i~~d~vi~a~G~~ 118 (283)
|++++.+ .+..+.. +... . .++..+.+|.||+|+|..
T Consensus 82 ~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 82 GVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred CeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 9999988 5644322 1111 1 112247899999999984
No 129
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.44 E-value=4.7e-07 Score=84.80 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=64.9
Q ss_pred HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC--------CCC--CHHHHHHHHHHHH
Q 023375 11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------SSF--DDRLRHYATTQLS 79 (283)
Q Consensus 11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~~~--~~~~~~~~~~~l~ 79 (283)
....++|+||||||+|+.+|..|+... .+++|+|+|+. .+. |.. ...+.....+.+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~ 90 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVAT 90 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHH
Confidence 345689999999999999999998632 12899999986 332 221 1234455666778
Q ss_pred hCCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 80 KSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 80 ~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
..+|+++.+ .| +..+.+++-. ..||.||+|+|..+.
T Consensus 91 ~~~v~~~~nv~v----g~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 91 DDRVSFFGNVTL----GRDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred HCCeEEEcCEEE----CccccHHHHh-hhCCEEEEecCCCCC
Confidence 889999887 55 2234443332 469999999999863
No 130
>PLN02546 glutathione reductase
Probab=98.44 E-value=2.2e-06 Score=81.92 Aligned_cols=91 Identities=25% Similarity=0.319 Sum_probs=70.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC----------CCCC---------C-----------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----------NEIL---------S----------- 64 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~----------~~~l---------~----------- 64 (283)
-.|+|||||+.|+++|..+++++ .+|.|+|+ +.+. |
T Consensus 80 yDvvVIG~GpaG~~aA~~aa~~G--------------~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~ 145 (558)
T PLN02546 80 FDLFTIGAGSGGVRASRFASNFG--------------ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYS 145 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHH
Confidence 57999999999999999999988 99999994 1110 0
Q ss_pred -------CCC----------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcC
Q 023375 65 -------SFD----------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWST 115 (283)
Q Consensus 65 -------~~~----------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~ 115 (283)
.+. .++.....+.|++.||+++.++++.++.+.|.+ +|+++.+|.||+||
T Consensus 146 ~~~~~~~~~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIAT 224 (558)
T PLN02546 146 HEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAV 224 (558)
T ss_pred HHHHhhhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeC
Confidence 000 012334455577889999999888888888877 67789999999999
Q ss_pred CCCCc
Q 023375 116 GVGPS 120 (283)
Q Consensus 116 G~~~~ 120 (283)
|.+|.
T Consensus 225 Gs~p~ 229 (558)
T PLN02546 225 GGRPF 229 (558)
T ss_pred CCCCC
Confidence 99986
No 131
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.43 E-value=1.5e-06 Score=79.18 Aligned_cols=93 Identities=23% Similarity=0.298 Sum_probs=65.0
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-CCC---------CCCHHHHH-------------
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS---------SFDDRLRH------------- 72 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~l~---------~~~~~~~~------------- 72 (283)
.|+|||||++|+.+|..|++.. ++.+|.++|+.. +.+ .+++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~------------~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~ 68 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRAR------------PDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGY 68 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcC------------CCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCC
Confidence 4899999999999999998651 128999998863 322 11111100
Q ss_pred ---------------------HHHHH-HHhCCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 73 ---------------------YATTQ-LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 73 ---------------------~~~~~-l~~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+.+. +++.+..++.+ +|+++++++|++++|+++.+|.||.|.|..+.
T Consensus 69 ~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 69 EVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred EEECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCCC
Confidence 11112 23334446667 89999888899999999999999999998875
No 132
>PRK07236 hypothetical protein; Provisional
Probab=98.43 E-value=1.6e-06 Score=79.27 Aligned_cols=94 Identities=20% Similarity=0.184 Sum_probs=65.5
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC------CCHHHHHHHHH---------
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FDDRLRHYATT--------- 76 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~------~~~~~~~~~~~--------- 76 (283)
...+|+|||||++|+.+|..|++.+ .+|+|+|+. ...+. +.+...+.+.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~ 70 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAG--------------WDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADI 70 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccc
Confidence 3478999999999999999999877 889999876 33221 12222222111
Q ss_pred ----------------------------------HHHh--CCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcC
Q 023375 77 ----------------------------------QLSK--SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWST 115 (283)
Q Consensus 77 ----------------------------------~l~~--~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~ 115 (283)
.|.+ .+++++.+ +|++++.+ .+++++|+++.+|.||.|-
T Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgAD 150 (386)
T PRK07236 71 GVPSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGAD 150 (386)
T ss_pred ccCccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECC
Confidence 1111 13567778 78888643 3677899999999999999
Q ss_pred CCCCc
Q 023375 116 GVGPS 120 (283)
Q Consensus 116 G~~~~ 120 (283)
|....
T Consensus 151 G~~S~ 155 (386)
T PRK07236 151 GGRST 155 (386)
T ss_pred CCCch
Confidence 98665
No 133
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.42 E-value=1e-05 Score=66.85 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=95.0
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-------CC-------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------FD------------------- 67 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-------~~------------------- 67 (283)
..|+|||+||+|+.+|.+|++.+ .+|.++|+. .+... |+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g--------------~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~y 96 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAG--------------LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRY 96 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCC--------------ceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcc
Confidence 58999999999999999999887 999999986 44211 11
Q ss_pred ------------HHHHHHHHHHHHhCCCEEEeC-ceEEE--eCC----eEEEc-----------CCcEEEeeEEEEcCCC
Q 023375 68 ------------DRLRHYATTQLSKSGVRLVRG-IVKDV--DSQ----KLILN-----------DGTEVPYGLLVWSTGV 117 (283)
Q Consensus 68 ------------~~~~~~~~~~l~~~gV~v~~~-~V~~v--~~~----~v~~~-----------~g~~i~~d~vi~a~G~ 117 (283)
.++...+...--+.|++++.. .|+++ .++ +|.+. |--.++++.||=+||.
T Consensus 97 e~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 97 EEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred eecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 111112222223457777777 66665 222 22221 2347899999999998
Q ss_pred CCc--hhhh-cc---CCCC--------CCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHH-HHHHHHH
Q 023375 118 GPS--TLVK-SL---DLPK--------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVA-ERQGKYL 182 (283)
Q Consensus 118 ~~~--~~~~-~~---~l~~--------~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A-~~qg~~~ 182 (283)
... .++. .. +.++ +..-.+.|+.+.++ +|++|++|=+++-.. | .|+..-..-+ ...|+.+
T Consensus 177 da~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~av~--G-~pRMGPiFGgMllSGkka 251 (262)
T COG1635 177 DAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNAVH--G-LPRMGPIFGGMLLSGKKA 251 (262)
T ss_pred chHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHhhc--C-CcccCchhhhhhhchHHH
Confidence 775 2222 11 2221 11123556666665 899999998664221 1 1221112223 3679999
Q ss_pred HHHHHHHhh
Q 023375 183 FSLLNRIGK 191 (283)
Q Consensus 183 a~~i~~~~~ 191 (283)
|+.+...++
T Consensus 252 Ae~i~e~L~ 260 (262)
T COG1635 252 AEEILEKLK 260 (262)
T ss_pred HHHHHHHhh
Confidence 988776654
No 134
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.41 E-value=7.2e-07 Score=90.57 Aligned_cols=91 Identities=19% Similarity=0.385 Sum_probs=68.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCCHHHHHHHHHHHHhCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKSG 82 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~--~~~~~~~~~~~~~l~~~g 82 (283)
..++|+||||||+|+.+|.+|++.+ .+|+|+++. .+ .| .++.++.....+.+++.|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G--------------~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~G 494 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG--------------VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIG 494 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCC
Confidence 4679999999999999999999987 899999986 32 12 246778888888899999
Q ss_pred CEEEeCceEEEeCCeEEEcCC-cEEEeeEEEEcCCCC-Cc
Q 023375 83 VRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGVG-PS 120 (283)
Q Consensus 83 V~v~~~~V~~v~~~~v~~~~g-~~i~~d~vi~a~G~~-~~ 120 (283)
|+++++.+. +..+++++- +...+|.||+|||.. |.
T Consensus 495 v~~~~~~~v---g~~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 495 VKIETNKVI---GKTFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred CEEEeCCcc---CCccCHHHHhhccCCCEEEEecCCCCCC
Confidence 999998432 122222221 124599999999985 44
No 135
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.38 E-value=3.1e-06 Score=79.26 Aligned_cols=91 Identities=22% Similarity=0.372 Sum_probs=64.2
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------CCCH---------------------
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD--------------------- 68 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------~~~~--------------------- 68 (283)
.|+|||||+.|+.+|..|++.+ .+|++||++.+.. .+|.
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G--------------~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~ 68 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLG--------------LKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGI 68 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCC
Confidence 6999999999999999999887 8999999843311 0111
Q ss_pred ----------HH-----------HHHHHHHHHhCCCEEEeCceEEEeCCeEEEc--CC-cEEEeeEEEEcCCCCCc
Q 023375 69 ----------RL-----------RHYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG-TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 69 ----------~~-----------~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g-~~i~~d~vi~a~G~~~~ 120 (283)
.+ .......+++.||+++.+++..+++..+... +| .++.+|.+|+|||.+|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~ 144 (461)
T TIGR01350 69 EVENVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPR 144 (461)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCC
Confidence 00 0111223456688888886666666665554 33 47999999999999886
No 136
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=98.37 E-value=2.2e-06 Score=72.31 Aligned_cols=54 Identities=30% Similarity=0.458 Sum_probs=46.4
Q ss_pred EEEeeEEEEcCCCCCc-hhhhccCCCCCCCCccccCCCcccCCCCCEEEecccccc
Q 023375 105 EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 159 (283)
Q Consensus 105 ~i~~d~vi~a~G~~~~-~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 159 (283)
.+.+|.+++++|+.|+ ++.-...+...++|.+.||+.|++ +.|++|++||.+..
T Consensus 268 qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~t-slpdvFa~gDvctt 322 (334)
T KOG2755|consen 268 QLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMET-SLPDVFAAGDVCTT 322 (334)
T ss_pred eeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccc-cccceeeecceecc
Confidence 5779999999999999 555455566778899999999999 99999999998863
No 137
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.36 E-value=1.5e-06 Score=79.05 Aligned_cols=96 Identities=26% Similarity=0.424 Sum_probs=74.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCC-----------HHHHHHHHHHHHhC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD-----------DRLRHYATTQLSKS 81 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~-----------~~~~~~~~~~l~~~ 81 (283)
..++|+|||||+.|.-++..+...+. .-+++++.+..++|... ..+.....+.++++
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~------------~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~ 140 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGF------------TERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEK 140 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCC------------CcceEEEeccccCcccchhcccceeeccccccccChhhHhhc
Confidence 35799999999997767666666553 27888888765554333 34455566788999
Q ss_pred CCEEEeC-ceEEEe--CCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 82 GVRLVRG-IVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 82 gV~v~~~-~V~~v~--~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
||+++++ .|+.++ .+.+.+.+|++++++.+++|||..+.
T Consensus 141 gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~ 182 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAK 182 (478)
T ss_pred CceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccc
Confidence 9999999 888776 45899999999999999999999555
No 138
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.35 E-value=6e-06 Score=82.18 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=41.0
Q ss_pred cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHH
Q 023375 104 TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF 183 (283)
Q Consensus 104 ~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a 183 (283)
.+++||+||+|+|..|+.... ..++-.+||+-- ....+...|+.+|+.++
T Consensus 713 ~~i~~~~vi~A~G~~~~~~~~----------------------~~~~s~~~d~~~--------~f~Gtvv~A~as~k~~~ 762 (1028)
T PRK06567 713 NDIKTKTVIMAIGIENNTQFD----------------------EDKYSYFGDCNP--------KYSGSVVKALASSKEGY 762 (1028)
T ss_pred ccccCCEEEEecccCCccccc----------------------ccccccccCCCC--------ccccHHHHHHHHHHhHH
Confidence 368999999999999984320 011234565542 12346778999999999
Q ss_pred HHHHHHhh
Q 023375 184 SLLNRIGK 191 (283)
Q Consensus 184 ~~i~~~~~ 191 (283)
.+|.+.+.
T Consensus 763 ~~i~~~l~ 770 (1028)
T PRK06567 763 DAINKKLI 770 (1028)
T ss_pred HHHHHHHh
Confidence 99988775
No 139
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.34 E-value=1.6e-06 Score=81.37 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=67.5
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKSG 82 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~g 82 (283)
..++|+|||||++|+++|..|+..+ .+|+++++. .+. | .++.++.....+.+++.|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G--------------~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 205 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG--------------VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMG 205 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCC
Confidence 5579999999999999999999876 899999986 331 2 246677777778899999
Q ss_pred CEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 83 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 83 V~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
|+++.+ .+.. .+.+++ ....+|.||+|+|..+.
T Consensus 206 v~~~~~~~v~~----~~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 206 IEFHLNCEVGR----DISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred CEEECCCEeCC----ccCHHH-HHhcCCEEEEEeCCCCC
Confidence 999988 5521 122221 12469999999999874
No 140
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.34 E-value=4e-06 Score=75.03 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEEEcCCCCCchhhhccCC
Q 023375 71 RHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 128 (283)
Q Consensus 71 ~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l 128 (283)
...+.+.+++.|++++.+ +|+++.. +. |.+++|+ +.+|.||+|+|.....+...++.
T Consensus 150 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 150 IQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTT
T ss_pred hhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccc
Confidence 334445556889999999 8998864 33 6778887 99999999999876666666654
No 141
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.33 E-value=4.6e-06 Score=78.08 Aligned_cols=91 Identities=20% Similarity=0.333 Sum_probs=65.8
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------C------------------C---
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S------------------S--- 65 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~------------------~--- 65 (283)
+|+|||||+.|+.+|..+++.+ .+|++||++.+. | .
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g--------------~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~ 67 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNG--------------KNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGI 67 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCc
Confidence 7999999999999999999987 899999985321 1 0
Q ss_pred --------CC-HHHH-----------HHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCC-cEEEeeEEEEcCCCCCc
Q 023375 66 --------FD-DRLR-----------HYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDG-TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 66 --------~~-~~~~-----------~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g-~~i~~d~vi~a~G~~~~ 120 (283)
.+ +.+. +.....+++.+|+++.+++.-++++.+.. +++ +++.+|.+|+|||.+|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~ 145 (458)
T PRK06912 68 TLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPT 145 (458)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCC
Confidence 00 0111 11233455678999888776677776555 344 37999999999999986
No 142
>PRK14694 putative mercuric reductase; Provisional
Probab=98.33 E-value=5.3e-06 Score=77.93 Aligned_cols=94 Identities=27% Similarity=0.381 Sum_probs=66.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------------------------C-
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------------------------S- 64 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------------------------~- 64 (283)
..-.|+|||||+.|+.+|..|++.+ .+|++||++.+. +
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g--------------~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~ 70 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERG--------------ARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPF 70 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccc
Confidence 3458999999999999999999987 899999875420 0
Q ss_pred --CC-------C-HHHHHHH------------HHHHHhC-CCEEEeCceEEEeCCe--EEEcCC--cEEEeeEEEEcCCC
Q 023375 65 --SF-------D-DRLRHYA------------TTQLSKS-GVRLVRGIVKDVDSQK--LILNDG--TEVPYGLLVWSTGV 117 (283)
Q Consensus 65 --~~-------~-~~~~~~~------------~~~l~~~-gV~v~~~~V~~v~~~~--v~~~~g--~~i~~d~vi~a~G~ 117 (283)
.+ + .++.++. ...+++. +|+++.++++.++.+. |++.+| +++.+|.+|+|||.
T Consensus 71 ~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs 150 (468)
T PRK14694 71 DDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGA 150 (468)
T ss_pred cCCcccCCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCC
Confidence 00 0 0111111 1123333 8999998888888774 555666 37999999999999
Q ss_pred CCc
Q 023375 118 GPS 120 (283)
Q Consensus 118 ~~~ 120 (283)
+|.
T Consensus 151 ~p~ 153 (468)
T PRK14694 151 RPA 153 (468)
T ss_pred CCC
Confidence 986
No 143
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.33 E-value=2.1e-05 Score=73.21 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=83.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccE-EEEEeCC-CCC----------------------CCC--
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL----------------------SSF-- 66 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~-V~li~~~-~~l----------------------~~~-- 66 (283)
...+|+|||||++|+-+|..|.+.+ .. +.++|++ ++. |.+
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~ 72 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPF 72 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCcc
Confidence 3468999999999999999999987 33 7777765 321 111
Q ss_pred --------CHHHHHHHHHHHHhCCCEEE--eC-ceEEE--eCC----eEEEcCCcE--EEeeEEEEcCCCCCchhhhcc-
Q 023375 67 --------DDRLRHYATTQLSKSGVRLV--RG-IVKDV--DSQ----KLILNDGTE--VPYGLLVWSTGVGPSTLVKSL- 126 (283)
Q Consensus 67 --------~~~~~~~~~~~l~~~gV~v~--~~-~V~~v--~~~----~v~~~~g~~--i~~d~vi~a~G~~~~~~~~~~- 126 (283)
..++.+++...++++++... .+ .|+.+ +.+ .|+++++.+ +.+|.||+|||.-..+.+...
T Consensus 73 ~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~ 152 (443)
T COG2072 73 RWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA 152 (443)
T ss_pred CCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC
Confidence 12378899999999987654 33 44444 333 477777755 559999999999655544443
Q ss_pred CCCCCCCCccccC----CCcccCCCCCEEEeccccc
Q 023375 127 DLPKSPGGRIGID----EWLRVPSVQDVFAVGDCSG 158 (283)
Q Consensus 127 ~l~~~~~g~i~Vd----~~l~~~~~~~VfaiGD~a~ 158 (283)
|.+ +..|.+.-. +.... ...+|-+||-.++
T Consensus 153 G~~-~f~g~~~HS~~~~~~~~~-~GKrV~VIG~GaS 186 (443)
T COG2072 153 GLD-EFKGRILHSADWPNPEDL-RGKRVLVIGAGAS 186 (443)
T ss_pred Ccc-CCCceEEchhcCCCcccc-CCCeEEEECCCcc
Confidence 222 233443332 12222 4578899986653
No 144
>PRK06834 hypothetical protein; Provisional
Probab=98.32 E-value=9.1e-06 Score=76.68 Aligned_cols=100 Identities=25% Similarity=0.381 Sum_probs=69.9
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC---CC--------------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI---LS-------------------------- 64 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~---l~-------------------------- 64 (283)
..|+|||||++|+-+|.+|++.+ .+|+++|+. .. .+
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G--------------~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~ 69 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAG--------------VDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQG 69 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcC
Confidence 57999999999999999999876 555555543 10 00
Q ss_pred ---------------------------CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEE
Q 023375 65 ---------------------------SFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLV 112 (283)
Q Consensus 65 ---------------------------~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi 112 (283)
.....+.+.+.+.+++.||+++.+ +|++++.+ .+++.+|+++.+|.||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vV 149 (488)
T PRK06834 70 QVAQVTGFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLV 149 (488)
T ss_pred CccccceeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 001234445556667789999999 88888643 3555678889999999
Q ss_pred EcCCCCCchhhhccCCC
Q 023375 113 WSTGVGPSTLVKSLDLP 129 (283)
Q Consensus 113 ~a~G~~~~~~~~~~~l~ 129 (283)
.|.|..+. .-+.++++
T Consensus 150 gADG~~S~-vR~~lgi~ 165 (488)
T PRK06834 150 GCDGGRSL-VRKAAGID 165 (488)
T ss_pred EecCCCCC-cHhhcCCC
Confidence 99999774 33334443
No 145
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.31 E-value=1.1e-05 Score=73.94 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCC
Q 023375 69 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 129 (283)
Q Consensus 69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~ 129 (283)
.+.+.+.+.+++.|++++.+ +|++++.+ .+++++|+++.+|.||.|.|..+. +-+.++++
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~-vr~~~g~~ 178 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST-LRELAGLP 178 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch-HHHhhcCC
Confidence 34455566677789999998 88888643 356678889999999999999874 33334443
No 146
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.31 E-value=7e-06 Score=71.64 Aligned_cols=91 Identities=24% Similarity=0.343 Sum_probs=67.3
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC-C------------------------------
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-S------------------------------ 64 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l-~------------------------------ 64 (283)
+|+|||||++|+.+|.+|++.+ .+|+++|+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--------------LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 5899999999999999999876 788888875210 0
Q ss_pred --------------------CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe--EEEcC-CcEEEeeEEEEcCCCC
Q 023375 65 --------------------SFDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILND-GTEVPYGLLVWSTGVG 118 (283)
Q Consensus 65 --------------------~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~--v~~~~-g~~i~~d~vi~a~G~~ 118 (283)
--..++.+.+.+.+.+.|++++.+ +++++. ++. +.+.+ ++++.+|.||.|+|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 001345566777778889999988 788764 343 33343 4679999999999986
Q ss_pred Cc
Q 023375 119 PS 120 (283)
Q Consensus 119 ~~ 120 (283)
..
T Consensus 148 s~ 149 (295)
T TIGR02032 148 SI 149 (295)
T ss_pred hH
Confidence 53
No 147
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.31 E-value=1.8e-06 Score=81.40 Aligned_cols=87 Identities=22% Similarity=0.300 Sum_probs=65.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKSG 82 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~g 82 (283)
..++|+|||||++|+++|..|++.+ .+|+++++. .+. | .+++++.....+.+++.|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g--------------~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 207 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAG--------------HTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEG 207 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCC
Confidence 4579999999999999999999876 899999986 331 3 245667777778889999
Q ss_pred CEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375 83 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVG 118 (283)
Q Consensus 83 V~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~ 118 (283)
|+++++ .+. . .+.. +.....+|.|++|+|..
T Consensus 208 v~~~~~~~v~-~---~~~~-~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 208 IDFVTNTEIG-V---DISA-DELKEQFDAVVLAGGAT 239 (485)
T ss_pred CEEECCCEeC-C---ccCH-HHHHhhCCEEEEccCCC
Confidence 999998 553 1 1111 11235799999999997
No 148
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.28 E-value=8.1e-06 Score=76.45 Aligned_cols=91 Identities=22% Similarity=0.370 Sum_probs=64.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC---------------------------CC-
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------------------------SF- 66 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~---------------------------~~- 66 (283)
-.|+|||||+.|+.+|..|++.+ .+|.+||++.+.. .+
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~g 69 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKLG--------------KKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFG 69 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999887 8999999743210 00
Q ss_pred --------C-HHHHHHH------------HHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCC-Cc
Q 023375 67 --------D-DRLRHYA------------TTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 120 (283)
Q Consensus 67 --------~-~~~~~~~------------~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~-~~ 120 (283)
+ .++.++. ...++..+|+++.+....++...+.+ +++++.+|.+|+|||.+ |+
T Consensus 70 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ 144 (460)
T PRK06292 70 IHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPP 144 (460)
T ss_pred CCcCCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCC
Confidence 0 1111111 22245567888877666666777766 67789999999999998 54
No 149
>PLN02697 lycopene epsilon cyclase
Probab=98.26 E-value=1.1e-05 Score=76.53 Aligned_cols=94 Identities=22% Similarity=0.374 Sum_probs=66.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC--------------------------
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------------------------- 65 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-------------------------- 65 (283)
....|+|||||++|+.+|..|++.+ .+|.+|++. ...+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~G--------------l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v 172 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLG--------------LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIV 172 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC--------------CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEE
Confidence 3468999999999999999999876 667777653 21100
Q ss_pred ----------------C-CHHHHHHHHHHHHhCCCEEEeCceEEEeC--Ce---EEEcCCcEEEeeEEEEcCCCCCc
Q 023375 66 ----------------F-DDRLRHYATTQLSKSGVRLVRGIVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 66 ----------------~-~~~~~~~~~~~l~~~gV~v~~~~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+ ...+.+.+.+.+.+.|++++..+|+++.. +. +++.+|+++.++.||.|+|..+.
T Consensus 173 ~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 173 YLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred EecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 0 11233455555677899985558888863 33 34567889999999999998763
No 150
>PLN02661 Putative thiazole synthesis
Probab=98.26 E-value=3.9e-05 Score=68.66 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=94.0
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------C-----------------
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------S----------------- 65 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------~----------------- 65 (283)
...|+|||||++|+-+|.+|++.. +.+|++||++ .... .
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~-------------g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~ 158 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNP-------------NVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVP 158 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcC-------------CCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCC
Confidence 358999999999999999998641 1788888875 2210 0
Q ss_pred CC-----------HHH-HHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEE------cC--C------cEEEeeEEEE
Q 023375 66 FD-----------DRL-RHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLIL------ND--G------TEVPYGLLVW 113 (283)
Q Consensus 66 ~~-----------~~~-~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~------~~--g------~~i~~d~vi~ 113 (283)
++ ... ...+.+.+++.||+++.+ .+.++.. + ++.+ .+ + ..+.++.||+
T Consensus 159 fd~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVl 238 (357)
T PLN02661 159 YDEQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVS 238 (357)
T ss_pred cccCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEE
Confidence 00 011 112223344578999888 6776532 2 3332 11 1 2689999999
Q ss_pred cCCCCCc---hhhhc---cCC----------CCCCCCccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHH-
Q 023375 114 STGVGPS---TLVKS---LDL----------PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE- 176 (283)
Q Consensus 114 a~G~~~~---~~~~~---~~l----------~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~- 176 (283)
|||..+. ..... +++ ..+..-...|+.+-++ +|++|+.|=.++-.+ | .|+..-..-++
T Consensus 239 ATGh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~~~--g-~~rmgp~fg~m~ 313 (357)
T PLN02661 239 SCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAEID--G-SPRMGPTFGAMM 313 (357)
T ss_pred cCCCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhhhc--C-CCccCchhHhHH
Confidence 9997653 11111 111 1111112445555555 899999997665221 2 22222223343
Q ss_pred HHHHHHHHHHHHHhh
Q 023375 177 RQGKYLFSLLNRIGK 191 (283)
Q Consensus 177 ~qg~~~a~~i~~~~~ 191 (283)
..|+.+|+.|...++
T Consensus 314 ~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 314 ISGQKAAHLALKALG 328 (357)
T ss_pred hhhHHHHHHHHHHHc
Confidence 679999999888775
No 151
>PTZ00058 glutathione reductase; Provisional
Probab=98.23 E-value=1.4e-05 Score=76.39 Aligned_cols=92 Identities=22% Similarity=0.347 Sum_probs=63.3
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC---------------------------C--
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------------------------S-- 65 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~---------------------------~-- 65 (283)
-.|+|||||+.|..+|..+++.+ .+|.+||++.+.. .
T Consensus 49 yDvvVIG~G~aG~~aA~~aa~~G--------------~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~G 114 (561)
T PTZ00058 49 YDLIVIGGGSGGMAAARRAARNK--------------AKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYG 114 (561)
T ss_pred ccEEEECcCHHHHHHHHHHHHcC--------------CeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcC
Confidence 47999999999999999999987 8999998643210 0
Q ss_pred ------CC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeE--------------------E--------
Q 023375 66 ------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKL--------------------I-------- 99 (283)
Q Consensus 66 ------~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v--------------------~-------- 99 (283)
++ ..+.+...+.+++.||+++.+.-.=++++.| +
T Consensus 115 i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (561)
T PTZ00058 115 FDTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQ 194 (561)
T ss_pred CCccCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeecccee
Confidence 00 0112334455677899999873211122222 2
Q ss_pred EcCCcEEEeeEEEEcCCCCCc
Q 023375 100 LNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 100 ~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.++|+++.+|.+|+|||.+|.
T Consensus 195 ~~~g~~i~ad~lVIATGS~P~ 215 (561)
T PTZ00058 195 LDDGQVIEGKNILIAVGNKPI 215 (561)
T ss_pred cCCCcEEECCEEEEecCCCCC
Confidence 246778999999999999986
No 152
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.22 E-value=3.4e-06 Score=79.28 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=65.7
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~ 81 (283)
...++|+|||||++|+.+|..|++.+ .+|+++++. .+. | .++.++.....+.+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAG--------------HKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAE 206 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhC
Confidence 34579999999999999999999876 899999986 331 2 23556666677788999
Q ss_pred CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375 82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 119 (283)
Q Consensus 82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~ 119 (283)
||+++++ .+. .+ +.. +.....+|.||+|+|..+
T Consensus 207 gv~~~~~~~v~-~~---~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 207 GIEFRTNVEVG-KD---ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred CcEEEeCCEEC-Cc---CCH-HHHHhhCCEEEEecCCCC
Confidence 9999998 442 11 111 111357999999999973
No 153
>PLN02507 glutathione reductase
Probab=98.21 E-value=1.6e-05 Score=75.30 Aligned_cols=92 Identities=23% Similarity=0.294 Sum_probs=66.3
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC----------CCCCC------CCCHH---------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----------NEILS------SFDDR--------- 69 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~----------~~~l~------~~~~~--------- 69 (283)
-.++||||||.|..+|..+++++ .+|.|||+ +.+.. -+|.+
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G--------------~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~ 91 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFG--------------AKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFG 91 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHH
Confidence 36999999999999999999988 89999994 11110 00100
Q ss_pred ----------------------------------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--cCCc--EEEeeEE
Q 023375 70 ----------------------------------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLL 111 (283)
Q Consensus 70 ----------------------------------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g~--~i~~d~v 111 (283)
+....++.+.+.||+++.+++..++++.+.. .+|+ ++.+|.|
T Consensus 92 ~~~~~~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~L 171 (499)
T PLN02507 92 GEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHI 171 (499)
T ss_pred HHHHHHHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEE
Confidence 1111223455679999999888888875544 5665 5889999
Q ss_pred EEcCCCCCc
Q 023375 112 VWSTGVGPS 120 (283)
Q Consensus 112 i~a~G~~~~ 120 (283)
|+|||.+|.
T Consensus 172 IIATGs~p~ 180 (499)
T PLN02507 172 LIATGSRAQ 180 (499)
T ss_pred EEecCCCCC
Confidence 999999986
No 154
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.21 E-value=1.8e-05 Score=72.42 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=35.8
Q ss_pred HHHHHHHhC-CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 73 YATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 73 ~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+.+.+.+. +|+++.+ ++++++.+ .+++.+|+++.+|.||.|.|..+.
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 344444455 4999988 88888643 356678889999999999998765
No 155
>PRK07588 hypothetical protein; Provisional
Probab=98.21 E-value=1.8e-05 Score=72.47 Aligned_cols=40 Identities=15% Similarity=0.358 Sum_probs=32.7
Q ss_pred CCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 81 SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 81 ~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+++++.+ +|++++.+ .|++++|+++.+|.||-|.|....
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 47999999 89888643 366789999999999999998664
No 156
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.20 E-value=4.1e-06 Score=81.73 Aligned_cols=90 Identities=16% Similarity=0.229 Sum_probs=66.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCCHHHHHHHHHHHHhCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKSG 82 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~--~~~~~~~~~~~~~l~~~g 82 (283)
..++|+|||||++|+.+|..|+..+ .+|+++++. .+ .| .++..+.+...+.+.+.|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~G 257 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG--------------HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMG 257 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcC
Confidence 4579999999999999999999877 899999986 43 12 246667777778889999
Q ss_pred CEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 83 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 83 V~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
|+++++....+ .+.+++. ...+|.||+|+|..+.
T Consensus 258 v~i~~~~~v~~---dv~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 258 AEFRFNTVFGR---DITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred CEEEeCCcccC---ccCHHHH-HhhcCEEEEEcCCCCC
Confidence 99998843221 1222221 2359999999998754
No 157
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.20 E-value=4.5e-06 Score=81.34 Aligned_cols=89 Identities=17% Similarity=0.279 Sum_probs=67.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKSG 82 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~g 82 (283)
..++|+|||||++|+.+|..|+..+ .+|+++++. .+. | .++....+...+.+++.|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G 374 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--------------VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG 374 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC
Confidence 4689999999999999999999887 899999987 321 2 256677777778899999
Q ss_pred CEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 83 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 83 V~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
|+++++ .+.. .+.+++ ....+|.|++|+|..+.
T Consensus 375 v~~~~~~~v~~----~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 375 IDFHLNCEIGR----DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred eEEEcCCccCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 999998 5521 122222 23469999999998654
No 158
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.20 E-value=1.3e-05 Score=76.08 Aligned_cols=130 Identities=21% Similarity=0.280 Sum_probs=81.6
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------------------------
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---------------------------- 64 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~---------------------------- 64 (283)
.|+|+|||||++|+..|..|.+.+ .+++++|+. .+..
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g--------------~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~ 66 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEG--------------LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMM 66 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT---------------EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGS
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--------------CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHh
Confidence 379999999999999999999877 899999885 4310
Q ss_pred ---CC-----------CHHHHHHHHHHHHhCCC--EEEeC-ceEEEeC--C-------eEEEcC-Cc--EEEeeEEEEcC
Q 023375 65 ---SF-----------DDRLRHYATTQLSKSGV--RLVRG-IVKDVDS--Q-------KLILND-GT--EVPYGLLVWST 115 (283)
Q Consensus 65 ---~~-----------~~~~~~~~~~~l~~~gV--~v~~~-~V~~v~~--~-------~v~~~~-g~--~i~~d~vi~a~ 115 (283)
.+ ..++.+|++.+.+..++ .+.++ +|.+|+. + .|++++ |+ +..+|.||+|+
T Consensus 67 ~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vvvat 146 (531)
T PF00743_consen 67 AFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVAT 146 (531)
T ss_dssp CCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE
T ss_pred cCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcC
Confidence 01 15788899998888887 36778 7888753 1 366643 42 45699999999
Q ss_pred CCCCchhhhc---cCCCCCCCCccccCCCcccC---CCCCEEEeccccc
Q 023375 116 GVGPSTLVKS---LDLPKSPGGRIGIDEWLRVP---SVQDVFAVGDCSG 158 (283)
Q Consensus 116 G~~~~~~~~~---~~l~~~~~g~i~Vd~~l~~~---~~~~VfaiGD~a~ 158 (283)
|.-..+.+.. .|++ +-+|.+.-....+.+ ...+|.++|-..+
T Consensus 147 G~~~~P~~P~~~~~G~e-~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 147 GHFSKPNIPEPSFPGLE-KFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp -SSSCESB-----CTGG-GHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred CCcCCCCCChhhhhhhh-cCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 9865443221 1332 124555544433321 3567999997654
No 159
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.19 E-value=2.1e-05 Score=72.12 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCC
Q 023375 68 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 129 (283)
Q Consensus 68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~ 129 (283)
..+.+.+.+.+.+.|++++.+ +|++++.+ .+++++|+++.+|.||.|.|..+. +.+.++++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~ 176 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIK 176 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCC
Confidence 345566667777889999998 89888643 366678889999999999998765 33334443
No 160
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.19 E-value=1.9e-05 Score=72.23 Aligned_cols=90 Identities=26% Similarity=0.414 Sum_probs=64.7
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------------------------------
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------------------------------ 64 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------------------------------ 64 (283)
.|+|||||++|+.+|..|++.+ .+|+|||+. .+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--------------~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--------------LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEY 66 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEE
Confidence 4899999999999999998765 677777754 2110
Q ss_pred --------------CC-CHHHHHHHHHHHHhCCCEEEeCceEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCC
Q 023375 65 --------------SF-DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP 119 (283)
Q Consensus 65 --------------~~-~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~ 119 (283)
.+ ...+.+.+.+.+.+.|++++.++|..++.+ .|++++|+++.++.||.|+|..+
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 67 RFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00 123345555666777999876677777543 35667888999999999999876
No 161
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.19 E-value=1.4e-05 Score=75.00 Aligned_cols=92 Identities=21% Similarity=0.368 Sum_probs=61.0
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC------CCHHH-----------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FDDRL----------------- 70 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~------~~~~~----------------- 70 (283)
-.|+||||||.|+++|..+++.+ .+|+|||+. .+... +|.+.
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G--------------~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~ 69 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLG--------------LKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFA 69 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhh
Confidence 47999999999999999999987 899999963 32110 11110
Q ss_pred --------------------------HHHHHHHHHhCCCEEEeCceEEEe-CCeEE--EcCCc--EEEeeEEEEcCCCCC
Q 023375 71 --------------------------RHYATTQLSKSGVRLVRGIVKDVD-SQKLI--LNDGT--EVPYGLLVWSTGVGP 119 (283)
Q Consensus 71 --------------------------~~~~~~~l~~~gV~v~~~~V~~v~-~~~v~--~~~g~--~i~~d~vi~a~G~~~ 119 (283)
.......+++.+|+++.+.. ++. ++.+. ..+|+ ++.||.+|+|||.+|
T Consensus 70 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 70 HLGIEVKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEP 148 (466)
T ss_pred hcCccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCC
Confidence 01112234455788777642 333 33443 34564 699999999999998
Q ss_pred ch
Q 023375 120 ST 121 (283)
Q Consensus 120 ~~ 121 (283)
.+
T Consensus 149 ~~ 150 (466)
T PRK06115 149 TP 150 (466)
T ss_pred CC
Confidence 63
No 162
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.19 E-value=4.9e-06 Score=81.33 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=66.4
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~ 81 (283)
...++|+|||||++|+.+|..|++.+ .+|+++|+. .+. | .++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--------------~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--------------VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 35689999999999999999999887 899999986 321 2 24566767677888999
Q ss_pred CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
||+++.+ .|. ..+.+++ ....+|.|++++|....
T Consensus 391 Gv~~~~~~~v~----~~i~~~~-~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 391 GIEFELNCEVG----KDISLES-LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred CeEEECCCEeC----CcCCHHH-HHhcCCEEEEeCCCCCC
Confidence 9999988 442 1111111 12369999999998643
No 163
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.18 E-value=8.7e-05 Score=66.66 Aligned_cols=156 Identities=20% Similarity=0.157 Sum_probs=97.5
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC--------------------CCH---
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS--------------------FDD--- 68 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~--------------------~~~--- 68 (283)
+...|.|||||.+|.|+-..|...... ...++..|.++ .++|. +++
T Consensus 186 ~~~~V~ViG~GQSAAEi~~~Ll~~~~~----------~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r 255 (436)
T COG3486 186 QKRSVTVIGSGQSAAEIFLDLLNSQPP----------QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEAR 255 (436)
T ss_pred cCceEEEEcCCccHHHHHHHHHhCCCC----------cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHH
Confidence 444599999999999999888754311 12467778775 44431 112
Q ss_pred ----------------HHHHHHHHHHH-------hCCCEEEeC-ceEEEeCCe---EEEc-------CCcEEEeeEEEEc
Q 023375 69 ----------------RLRHYATTQLS-------KSGVRLVRG-IVKDVDSQK---LILN-------DGTEVPYGLLVWS 114 (283)
Q Consensus 69 ----------------~~~~~~~~~l~-------~~gV~v~~~-~V~~v~~~~---v~~~-------~g~~i~~d~vi~a 114 (283)
++...+.+.|- +.+|.++.+ .|.+++..+ +.+. +.+++++|.||+|
T Consensus 256 ~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlA 335 (436)
T COG3486 256 DELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILA 335 (436)
T ss_pred HHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEe
Confidence 22222222221 335777777 788887653 4331 2357899999999
Q ss_pred CCCCCc--hhhhccC--CCCCCCCccccCCCcccCCCC----CEEEeccccccCcCCCCcCCCcchHHHHHHHHHH
Q 023375 115 TGVGPS--TLVKSLD--LPKSPGGRIGIDEWLRVPSVQ----DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182 (283)
Q Consensus 115 ~G~~~~--~~~~~~~--l~~~~~g~i~Vd~~l~~~~~~----~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~ 182 (283)
||.+.. ++++.+. +..+.+|+..|+.+.++...+ .||+-|-+.+. .+-.-|...-.|.+.+.++
T Consensus 336 TGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht----HGig~pdLsl~a~Raa~I~ 407 (436)
T COG3486 336 TGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT----HGIGAPDLSLGAWRAAVIL 407 (436)
T ss_pred cccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc----cccCCccchHHHHHHHHHH
Confidence 999854 3665553 556888999999887764322 69998877653 1222355665565555443
No 164
>PRK13748 putative mercuric reductase; Provisional
Probab=98.16 E-value=1.9e-05 Score=75.78 Aligned_cols=92 Identities=29% Similarity=0.398 Sum_probs=65.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC---------C---------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S--------------------- 64 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l---------~--------------------- 64 (283)
..|+|||||+.|+.+|..+++.+ .+|.|||++.+. |
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G--------------~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~ 164 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQG--------------ARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDG 164 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccC
Confidence 58999999999999999999987 899999975320 0
Q ss_pred CC-------C-HHHHHH------------HHHHHHhC-CCEEEeCceEEEeCCeEEE--cCCc--EEEeeEEEEcCCCCC
Q 023375 65 SF-------D-DRLRHY------------ATTQLSKS-GVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLVWSTGVGP 119 (283)
Q Consensus 65 ~~-------~-~~~~~~------------~~~~l~~~-gV~v~~~~V~~v~~~~v~~--~~g~--~i~~d~vi~a~G~~~ 119 (283)
.+ + ..+.++ ....+.+. +|+++.++++.++++.+.+ .+|+ ++.+|.+|+|||.+|
T Consensus 165 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p 244 (561)
T PRK13748 165 GIAATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASP 244 (561)
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 01 0 111111 11223444 8999988777777775544 4553 699999999999998
Q ss_pred c
Q 023375 120 S 120 (283)
Q Consensus 120 ~ 120 (283)
.
T Consensus 245 ~ 245 (561)
T PRK13748 245 A 245 (561)
T ss_pred C
Confidence 6
No 165
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.14 E-value=2.6e-05 Score=71.48 Aligned_cols=93 Identities=28% Similarity=0.413 Sum_probs=70.9
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--CCCCC----------------C---------
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSS----------------F--------- 66 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~~l~~----------------~--------- 66 (283)
..+|+|||||++|+-+|..|++.+ .+|+|||+. ++.+. +
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G--------------~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~ 67 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG--------------LDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEAL 67 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhc
Confidence 368999999999999999999987 777887774 22110 0
Q ss_pred -----------------------------------CHHHHHHHHHHHHhCC-CEEEeC-ceEEEeCC----eEEEc-CCc
Q 023375 67 -----------------------------------DDRLRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILN-DGT 104 (283)
Q Consensus 67 -----------------------------------~~~~~~~~~~~l~~~g-V~v~~~-~V~~v~~~----~v~~~-~g~ 104 (283)
...+.+.+.+.+.+.+ |+++.+ +|+.++.+ .++++ +|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~ 147 (387)
T COG0654 68 GVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGE 147 (387)
T ss_pred cCCceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCc
Confidence 1245566666676665 999998 89888754 37777 999
Q ss_pred EEEeeEEEEcCCCCCc
Q 023375 105 EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 105 ~i~~d~vi~a~G~~~~ 120 (283)
++.+|+||-|=|....
T Consensus 148 ~~~a~llVgADG~~S~ 163 (387)
T COG0654 148 TLDADLLVGADGANSA 163 (387)
T ss_pred EEecCEEEECCCCchH
Confidence 9999999999997554
No 166
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.14 E-value=2.3e-05 Score=74.89 Aligned_cols=90 Identities=24% Similarity=0.351 Sum_probs=63.4
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC------CC---------------C------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------SS---------------F------ 66 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l------~~---------------~------ 66 (283)
-.|+|||||++|+++|..+++.+ .+|.|+++. +.+ |. +
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G--------------~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~ 70 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMG--------------AKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGK 70 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcC--------------CcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHH
Confidence 47999999999999999999887 788888765 111 00 0
Q ss_pred ---------------------------C-HHHHHHHHHHHHhC-CCEEEeCceEEEe--CC---eEEEcCCcEEEeeEEE
Q 023375 67 ---------------------------D-DRLRHYATTQLSKS-GVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLV 112 (283)
Q Consensus 67 ---------------------------~-~~~~~~~~~~l~~~-gV~v~~~~V~~v~--~~---~v~~~~g~~i~~d~vi 112 (283)
+ ......+.+.+.+. |++++.+.|.++. ++ +|.+.+|.++.++.||
T Consensus 71 ~~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VI 150 (618)
T PRK05192 71 AIDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVV 150 (618)
T ss_pred HHhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEE
Confidence 0 01123333444444 7898766777763 33 4778889999999999
Q ss_pred EcCCCC
Q 023375 113 WSTGVG 118 (283)
Q Consensus 113 ~a~G~~ 118 (283)
.|+|..
T Consensus 151 lATGTF 156 (618)
T PRK05192 151 LTTGTF 156 (618)
T ss_pred EeeCcc
Confidence 999954
No 167
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.14 E-value=1.3e-05 Score=73.15 Aligned_cols=134 Identities=24% Similarity=0.377 Sum_probs=93.7
Q ss_pred HHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeC---Ce--EEEcC---C--cEEEee
Q 023375 41 VRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS---QK--LILND---G--TEVPYG 109 (283)
Q Consensus 41 ~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~~---~~--v~~~~---g--~~i~~d 109 (283)
++.+||+ .+|+++-.. +....+ .-++..+.-++.||+++.+++.+|.+ +. |..+| | .++++|
T Consensus 394 Ike~~Pd----~~v~I~YmDiRafG~~---yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~D 466 (622)
T COG1148 394 IKERYPD----TDVTIYYMDIRAFGKD---YEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEAD 466 (622)
T ss_pred hhhcCCC----cceeEEEEEeeccCcc---HHHHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccc
Confidence 3566776 888888665 433322 23334444457899999997666643 23 33333 2 478999
Q ss_pred EEEEcCCCCCch----hhhccCCCCCCCCccccC-CCccc--CCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHH
Q 023375 110 LLVWSTGVGPST----LVKSLDLPKSPGGRIGID-EWLRV--PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 182 (283)
Q Consensus 110 ~vi~a~G~~~~~----~~~~~~l~~~~~g~i~Vd-~~l~~--~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~ 182 (283)
+|++++|..|.+ +...++++.+++|++.-. +.++. ...++||.+|=|.. |+..+.++.||..+
T Consensus 467 LVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg----------PkdI~~siaqa~aA 536 (622)
T COG1148 467 LVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG----------PKDIADSIAQAKAA 536 (622)
T ss_pred eEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC----------CccHHHHHHHhHHH
Confidence 999999999863 455679999999987776 44442 15789999997663 88999999999988
Q ss_pred HHHHHHHhh
Q 023375 183 FSLLNRIGK 191 (283)
Q Consensus 183 a~~i~~~~~ 191 (283)
|......+.
T Consensus 537 A~kA~~~l~ 545 (622)
T COG1148 537 AAKAAQLLG 545 (622)
T ss_pred HHHHHHHhh
Confidence 877666554
No 168
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.14 E-value=3.3e-05 Score=70.49 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCC-CEEEeC-ceEEEeC--C--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~g-V~v~~~-~V~~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+++.| ++++ + +++++.. + .|++++|+++.+|.||.|.|....
T Consensus 113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 113 IERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 3445556667777 9998 6 7888753 3 356678888999999999998764
No 169
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.12 E-value=2.9e-05 Score=71.40 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 72 HYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 72 ~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+++.|++++.+ ++++++.+ .|++++|+++.+|.||.|.|....
T Consensus 116 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 34445566778999988 88888543 366778889999999999998664
No 170
>PRK08244 hypothetical protein; Provisional
Probab=98.11 E-value=3.4e-05 Score=72.90 Aligned_cols=92 Identities=24% Similarity=0.428 Sum_probs=65.0
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC-----------------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------------------------- 64 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------------------------- 64 (283)
..|+||||||+|+.+|..|++.+ .+|+|||+. ...+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G--------------~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~ 68 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAG--------------VKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGR 68 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcc
Confidence 47999999999999999999876 566666643 1100
Q ss_pred ---------------------C------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEc--CC-cEEEe
Q 023375 65 ---------------------S------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILN--DG-TEVPY 108 (283)
Q Consensus 65 ---------------------~------~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~--~g-~~i~~ 108 (283)
. + ...+.+.+.+.+++.|++++.+ ++++++. +. +++. +| +++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a 148 (493)
T PRK08244 69 KLPSGHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTS 148 (493)
T ss_pred cccceEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEe
Confidence 0 0 0234455566667789999999 8888753 33 3443 45 47999
Q ss_pred eEEEEcCCCCCc
Q 023375 109 GLLVWSTGVGPS 120 (283)
Q Consensus 109 d~vi~a~G~~~~ 120 (283)
|.||-|.|..+.
T Consensus 149 ~~vVgADG~~S~ 160 (493)
T PRK08244 149 SYVVGADGAGSI 160 (493)
T ss_pred CEEEECCCCChH
Confidence 999999998764
No 171
>PRK05868 hypothetical protein; Validated
Probab=98.10 E-value=4.1e-05 Score=69.76 Aligned_cols=41 Identities=7% Similarity=0.285 Sum_probs=33.5
Q ss_pred hCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 80 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 80 ~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
..|++++.+ +|++++.+ .|++++|+++.+|.||-|-|....
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 358999988 78888643 366789999999999999998765
No 172
>PRK07846 mycothione reductase; Reviewed
Probab=98.10 E-value=2.5e-05 Score=73.08 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=36.3
Q ss_pred HHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 78 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 78 l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+++.||+++.++..-++++.|++.+|+++.+|.+|+|||.+|.
T Consensus 99 ~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~ 141 (451)
T PRK07846 99 RDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPV 141 (451)
T ss_pred hhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCC
Confidence 5567899988865556778899988889999999999999986
No 173
>PRK06184 hypothetical protein; Provisional
Probab=98.10 E-value=4.3e-05 Score=72.45 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEE---cCCcEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LIL---NDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~---~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+.+.|++++.+ ++++++.+ . +++ .+++++.+|.||-|.|....
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 3445666677789999999 89888643 3 444 45678999999999998764
No 174
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.09 E-value=8.6e-06 Score=75.78 Aligned_cols=89 Identities=12% Similarity=0.178 Sum_probs=59.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHH-hhhhHHHhhcCCCCCccEEEEEeCC-CCC--------CCCC--HHHHHHHHHHHHh
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------SSFD--DRLRHYATTQLSK 80 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~-~~~~~~~~~~~~~~~~~~V~li~~~-~~l--------~~~~--~~~~~~~~~~l~~ 80 (283)
+.++|+||||||+|+++|..|.. .+ ++|+++|+. .+. |.-+ ..+...+.+.+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g--------------~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~ 103 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHER--------------VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLS 103 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC--------------CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhh
Confidence 56899999999999999998764 33 899999986 332 1111 2344555555666
Q ss_pred CCCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 81 SGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 81 ~gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+++++.+ .|.. .++.++= .-.+|.||+|+|..+.
T Consensus 104 ~~v~f~gnv~VG~----Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 104 PNYRFFGNVHVGV----DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred CCeEEEeeeEecC----ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 78888865 4421 1222111 1269999999998864
No 175
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.09 E-value=2.5e-05 Score=79.63 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=66.7
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC----------CC-CHHHHHHHHHHHHh
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------SF-DDRLRHYATTQLSK 80 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~----------~~-~~~~~~~~~~~l~~ 80 (283)
...+|+||||||+|+.+|.++++.+ .+|+|+|.. .+.. .. ..+......+.+.+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G--------------~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~ 227 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAG--------------ARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTA 227 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhc
Confidence 4578999999999999999999876 899999975 3321 11 12333445566666
Q ss_pred C-CCEEEeC-ceEEEeCCe-EEE----c-------CC------cEEEeeEEEEcCCCCCch
Q 023375 81 S-GVRLVRG-IVKDVDSQK-LIL----N-------DG------TEVPYGLLVWSTGVGPST 121 (283)
Q Consensus 81 ~-gV~v~~~-~V~~v~~~~-v~~----~-------~g------~~i~~d~vi~a~G~~~~~ 121 (283)
. +|+++.+ +|..+..+. +.. . ++ .++.+|.||+|||..+.+
T Consensus 228 ~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 228 MPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred CCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 6 5999988 787775532 110 0 11 168999999999998763
No 176
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.08 E-value=5.6e-05 Score=69.31 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=38.0
Q ss_pred HHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCC
Q 023375 75 TTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 128 (283)
Q Consensus 75 ~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l 128 (283)
.+.+++.|++++.+ +|.+++.+ .|.+.++ ++.+|.||.|+|.....+.+.+++
T Consensus 156 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~ 213 (393)
T PRK11728 156 AELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGL 213 (393)
T ss_pred HHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCC
Confidence 34445678999988 78887532 2455555 799999999999987666655554
No 177
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.08 E-value=3.8e-05 Score=72.29 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=63.8
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC-------CCCCC------CCCHH------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-------NEILS------SFDDR------------ 69 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~-------~~~l~------~~~~~------------ 69 (283)
..++|||||+.|+.+|..+++.+ .+|.+||+ ..+-. .+|.+
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g--------------~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~ 70 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLG--------------LKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENA 70 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHH
Confidence 47999999999999999999987 89999997 12110 00100
Q ss_pred -------------------------------HHHHHHHHHHhCCCEEEeCceEEEe----CCeEEEc--CCcEEEeeEEE
Q 023375 70 -------------------------------LRHYATTQLSKSGVRLVRGIVKDVD----SQKLILN--DGTEVPYGLLV 112 (283)
Q Consensus 70 -------------------------------~~~~~~~~l~~~gV~v~~~~V~~v~----~~~v~~~--~g~~i~~d~vi 112 (283)
+.+...+.++..+|+++.+++..++ +..|.+. +++++.+|.+|
T Consensus 71 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lV 150 (475)
T PRK06327 71 GHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVI 150 (475)
T ss_pred HhhHHhcCccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEE
Confidence 0111223345568888887665555 4456664 34689999999
Q ss_pred EcCCCCCc
Q 023375 113 WSTGVGPS 120 (283)
Q Consensus 113 ~a~G~~~~ 120 (283)
+|||.+|.
T Consensus 151 iATGs~p~ 158 (475)
T PRK06327 151 IATGSEPR 158 (475)
T ss_pred EeCCCCCC
Confidence 99999986
No 178
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.06 E-value=2.1e-05 Score=73.80 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=30.0
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~ 61 (283)
.+|+||||||.|+.+|..+++.+ .+|+|||++.
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G--------------~~V~lie~~~ 37 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLG--------------LKTAVVEKKY 37 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCC
Confidence 57999999999999999999887 8999999753
No 179
>PRK06753 hypothetical protein; Provisional
Probab=98.06 E-value=3.9e-05 Score=69.71 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=30.9
Q ss_pred CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 82 GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 82 gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+++.+ +|++++.+ .|++++|+++.+|.||-|-|..+.
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 4568888 78888643 366788999999999999997654
No 180
>PRK09126 hypothetical protein; Provisional
Probab=98.06 E-value=5.3e-05 Score=69.32 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=33.5
Q ss_pred hCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 80 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 80 ~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
..|++++.+ +|++++.+ .|++++|+++.+|.||.|.|..+.
T Consensus 123 ~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred CCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 468999999 88888543 366778889999999999998765
No 181
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.05 E-value=9e-06 Score=80.94 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=32.0
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
...++|+||||||+|+++|..|+..+ ++|+++|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G--------------h~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG--------------HNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEccc
Confidence 46789999999999999999999877 999999974
No 182
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.05 E-value=4.4e-05 Score=68.16 Aligned_cols=91 Identities=23% Similarity=0.373 Sum_probs=62.8
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-----------------------------
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS----------------------------- 65 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~----------------------------- 65 (283)
+|+|||||++|+-+|..|++.+ .+|+|||+. ...+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G--------------~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~ 68 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAG--------------IDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSP 68 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--------------CEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEE
T ss_pred eEEEECCCHHHHHHHHHHHhcc--------------cccccchhcccccccccccccccccccccccccchhhhhhhccc
Confidence 7999999999999999999987 777777764 22000
Q ss_pred ---------------------------------------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEE
Q 023375 66 ---------------------------------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LIL 100 (283)
Q Consensus 66 ---------------------------------------~-~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~ 100 (283)
+ ...+.+.+.+.+++.|++++.+ ++++++. ++ +.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~ 148 (356)
T PF01494_consen 69 HEVMRIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVV 148 (356)
T ss_dssp ECEEEEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEE
T ss_pred ccceeeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccccccccc
Confidence 0 1345666777778889999999 7876643 33 233
Q ss_pred c---CC--cEEEeeEEEEcCCCCCc
Q 023375 101 N---DG--TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 101 ~---~g--~~i~~d~vi~a~G~~~~ 120 (283)
. +| +++.+|.||-|-|....
T Consensus 149 ~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 149 RDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp EETCTCEEEEEEESEEEE-SGTT-H
T ss_pred ccccCCceeEEEEeeeecccCcccc
Confidence 2 34 36899999999998775
No 183
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.04 E-value=7.4e-05 Score=67.95 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCC-CEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~g-V~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+.+.| ++++.+ +|++++.+ .+++++|+++.+|.||.|.|....
T Consensus 108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 108 LQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 3444555566677 999988 88888643 356678889999999999998654
No 184
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.04 E-value=4.6e-05 Score=72.17 Aligned_cols=92 Identities=23% Similarity=0.328 Sum_probs=62.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC---------CCC------CCC------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---------ILS------SFD------------ 67 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~---------~l~------~~~------------ 67 (283)
-.|+||||||.|+.+|..+++.+ .+|+|||+.+ +-. -.|
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G--------------~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~ 71 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHG--------------KKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGS 71 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHH
Confidence 47999999999999999999987 8999999520 100 011
Q ss_pred -------------------HHHHHHHHHH-----------HHhCCCEEEeCceEEEeCCeEEEcC---CcEEEeeEEEEc
Q 023375 68 -------------------DRLRHYATTQ-----------LSKSGVRLVRGIVKDVDSQKLILND---GTEVPYGLLVWS 114 (283)
Q Consensus 68 -------------------~~~~~~~~~~-----------l~~~gV~v~~~~V~~v~~~~v~~~~---g~~i~~d~vi~a 114 (283)
.++.++..+. ++..+|+++.+...-.++..|.+.+ ++++.+|.||+|
T Consensus 72 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIA 151 (499)
T PTZ00052 72 IFHHDSQMYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIA 151 (499)
T ss_pred HHHhHHhcCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEe
Confidence 1122222222 2335777777654445556676643 357999999999
Q ss_pred CCCCCc
Q 023375 115 TGVGPS 120 (283)
Q Consensus 115 ~G~~~~ 120 (283)
||.+|.
T Consensus 152 TGs~p~ 157 (499)
T PTZ00052 152 TGGRPS 157 (499)
T ss_pred cCCCCC
Confidence 999987
No 185
>PRK07190 hypothetical protein; Provisional
Probab=98.03 E-value=6e-05 Score=71.15 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCC
Q 023375 71 RHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP 119 (283)
Q Consensus 71 ~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~ 119 (283)
...+.+.+.+.|++++.+ +|++++. ++ +++.+|+++.++.||.|.|...
T Consensus 112 e~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 112 EKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 344555667789999999 8988864 33 4556788899999999999855
No 186
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=98.03 E-value=2.2e-05 Score=74.00 Aligned_cols=76 Identities=24% Similarity=0.265 Sum_probs=59.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
+.++|+|||+|.+|+++|..|++.+ .+|++++..+ ........+.|++.||+++++ .+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--------------~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~~ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--------------ARVTVVDDGD------DERHRALAAILEALGATVRLGPGPT 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCcc
Confidence 4568999999999999999998877 8999998653 122344566788899999987 442
Q ss_pred EEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
....+|.||.++|..|+
T Consensus 75 ------------~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 75 ------------LPEDTDLVVTSPGWRPD 91 (480)
T ss_pred ------------ccCCCCEEEECCCcCCC
Confidence 12458999999999998
No 187
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.02 E-value=7.9e-05 Score=68.67 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=34.3
Q ss_pred HHHHHHHHHhC-CCEEEeC-ceEEEeCC----eEEEcC-C--cEEEeeEEEEcCCCCCc
Q 023375 71 RHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILND-G--TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 71 ~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~-g--~~i~~d~vi~a~G~~~~ 120 (283)
.+.+.+.+.+. +|+++.+ ++++++.+ .|++++ + .++.+|.||.|.|....
T Consensus 124 ~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 124 LEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 33444445454 7999988 88888543 255553 3 36999999999998764
No 188
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.01 E-value=8.2e-05 Score=68.48 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=35.1
Q ss_pred HHHHHHh-CCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 74 ATTQLSK-SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 74 ~~~~l~~-~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+ .||+++.+ +|++++.+ .|++++|+++.+|.||-|.|....
T Consensus 117 L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 117 LLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 3343444 37999988 88888543 467788999999999999997553
No 189
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.3e-05 Score=63.31 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=70.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---CC--------------CCCC-----CHHHHH
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------------LSSF-----DDRLRH 72 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---~~--------------l~~~-----~~~~~~ 72 (283)
-+|+|||+||.+...|.++++.. .+-.|+|.. .+ +|.+ ++++.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaarae--------------lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d 74 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAE--------------LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMD 74 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcc--------------cCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHH
Confidence 38999999999999999998754 344444431 11 2333 578999
Q ss_pred HHHHHHHhCCCEEEeCceEEEeCCe---EEEcCCcEEEeeEEEEcCCCCCc
Q 023375 73 YATTQLSKSGVRLVRGIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 73 ~~~~~l~~~gV~v~~~~V~~v~~~~---v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.++++-++.|.++++..|++++-.. ....|.+.+.+|.||++||..+.
T Consensus 75 ~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 75 KMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAK 125 (322)
T ss_pred HHHHHHHhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEeccccee
Confidence 9999999999999999888876542 33346678999999999998775
No 190
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.00 E-value=7.7e-05 Score=69.29 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEe--CCeE--EEcCCcEEEeeEEEEcCCCCC
Q 023375 71 RHYATTQLSKSGVRLVRG-IVKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGP 119 (283)
Q Consensus 71 ~~~~~~~l~~~gV~v~~~-~V~~v~--~~~v--~~~~g~~i~~d~vi~a~G~~~ 119 (283)
.+.+.+..++.|++++.+ +|+++. ++.+ ...+++++.+|.||.|+|...
T Consensus 111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 111 DAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 344555567789999999 888874 3333 335677899999999999743
No 191
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.99 E-value=9.2e-05 Score=67.73 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+.+. |++++.+ +|++++.+ .|.+++|+++.+|.||.|.|....
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 344455555665 9999988 88887533 356678889999999999998775
No 192
>PRK13984 putative oxidoreductase; Provisional
Probab=97.99 E-value=2e-05 Score=76.32 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=66.1
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-C-------CC--CCCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LS--SFDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~-------l~--~~~~~~~~~~~~~l~~~ 81 (283)
+..++|+|||+|++|+.+|..|++.+ .+|+++++.. . +| .+++++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--------------~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG--------------YEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 45689999999999999999999877 8999998763 2 11 23556666667788999
Q ss_pred CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375 82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 119 (283)
Q Consensus 82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~ 119 (283)
||+++.+ .|.. .+.+++ ....+|.||+|+|..+
T Consensus 347 gv~~~~~~~v~~----~~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 347 GVKIHLNTRVGK----DIPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred CcEEECCCEeCC----cCCHHH-HHhcCCEEEEEcCcCC
Confidence 9999998 5521 111111 2357999999999864
No 193
>PRK09897 hypothetical protein; Provisional
Probab=97.99 E-value=7.4e-05 Score=70.97 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=30.0
Q ss_pred HhCC--CEEEeC-ceEEEeCC--e--EEEcC-CcEEEeeEEEEcCCCCCc
Q 023375 79 SKSG--VRLVRG-IVKDVDSQ--K--LILND-GTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 79 ~~~g--V~v~~~-~V~~v~~~--~--v~~~~-g~~i~~d~vi~a~G~~~~ 120 (283)
.+.| ++++.+ +|++++.+ + |++.+ ++.+.+|.||+|+|..++
T Consensus 118 ~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 118 RQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWP 167 (534)
T ss_pred HHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCC
Confidence 3455 677777 88888643 3 44444 467999999999998654
No 194
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.98 E-value=7.6e-05 Score=68.07 Aligned_cols=93 Identities=19% Similarity=0.372 Sum_probs=65.1
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-C----------CC-----------------
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-S----------SF----------------- 66 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-~----------~~----------------- 66 (283)
.|+|||||++|..+|..|.+.. .+.+|.+||+. +.. + ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~------------~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~ 68 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR------------PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVY 68 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC------------CCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEE
Confidence 4899999999999999994322 12889999875 320 1 00
Q ss_pred -----------------CHHHHHHHHHHHHhCCCEEEeCceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 67 -----------------DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 67 -----------------~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
...+.+.+.+.+.+.++.++..+|++|+.+ .|++++|+++.++.||-|.|..+.
T Consensus 69 ~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 69 FPDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eCCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 123445555666655655555589998765 357889999999999999996544
No 195
>PRK08013 oxidoreductase; Provisional
Probab=97.98 E-value=0.00012 Score=67.31 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=36.8
Q ss_pred HHHHHHHHHhC-CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 71 RHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 71 ~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+.+.+.+.+. ||+++.+ +|++++.+ .+++.+|+++.+|.||-|-|....
T Consensus 114 ~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 114 HYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 33344444554 7999988 88888543 356678999999999999998654
No 196
>PRK07045 putative monooxygenase; Reviewed
Probab=97.97 E-value=0.0001 Score=67.45 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=37.4
Q ss_pred HHHHHHHHHHh-CCCEEEeC-ceEEEeCC------eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSK-SGVRLVRG-IVKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~-~gV~v~~~-~V~~v~~~------~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+.+ .|++++.+ +|++++.+ .|++++|+++.+|.||-|.|....
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 34444444443 47999999 88888542 366778899999999999998764
No 197
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.97 E-value=1.1e-05 Score=75.02 Aligned_cols=90 Identities=22% Similarity=0.268 Sum_probs=68.2
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~ 81 (283)
...++|+|||+||.|+.+|..|+..+ +.|+++++. ... | .++.++.+...+.|++.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G--------------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~ 186 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAG--------------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERS 186 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCC--------------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHc
Confidence 34489999999999999999999988 999999985 321 3 24678889999999999
Q ss_pred CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 82 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 82 gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
||+|+.+ ++-. .+++++ ..-++|.|++++|..-.
T Consensus 187 Gv~~~~~~~vG~----~it~~~-L~~e~Dav~l~~G~~~~ 221 (457)
T COG0493 187 GVEFKLNVRVGR----DITLEE-LLKEYDAVFLATGAGKP 221 (457)
T ss_pred CeEEEEcceECC----cCCHHH-HHHhhCEEEEeccccCC
Confidence 9999998 5521 222221 11235999999997544
No 198
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.96 E-value=0.00011 Score=67.37 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcE-EEeeEEEEcCCCCCchhhhccCCCCC
Q 023375 71 RHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTE-VPYGLLVWSTGVGPSTLVKSLDLPKS 131 (283)
Q Consensus 71 ~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~-i~~d~vi~a~G~~~~~~~~~~~l~~~ 131 (283)
...+.+.+.++|++++++ +|+.++. + .+.+.+|++ +.|+.||.|+|..+..+.+.++++.+
T Consensus 156 t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~ 223 (429)
T COG0579 156 TRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcc
Confidence 344445566789999999 8998864 3 245567766 99999999999999888888776653
No 199
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.96 E-value=2e-05 Score=70.89 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=54.5
Q ss_pred HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC---------CC-------------
Q 023375 11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------FD------------- 67 (283)
Q Consensus 11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~---------~~------------- 67 (283)
..+.++|+|||||.+|.|++..|.+..+. .+|+++.++ .+.|. +.
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~------------~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~ 254 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPE------------AKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDE 254 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TT------------EEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HH
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCC------------cEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHH
Confidence 45678999999999999999999987532 799999886 33221 11
Q ss_pred ------------------HHHHHHHHHHH------HhCCCEEEeC-ceEEEeC--C-eE--EEcC-----CcEEEeeEEE
Q 023375 68 ------------------DRLRHYATTQL------SKSGVRLVRG-IVKDVDS--Q-KL--ILND-----GTEVPYGLLV 112 (283)
Q Consensus 68 ------------------~~~~~~~~~~l------~~~gV~v~~~-~V~~v~~--~-~v--~~~~-----g~~i~~d~vi 112 (283)
+++.+.+.+.+ .+..+.++.+ +|++++. + ++ .+.+ ..++.+|.||
T Consensus 255 ~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~Vi 334 (341)
T PF13434_consen 255 ERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVI 334 (341)
T ss_dssp HHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEE
T ss_pred HHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEE
Confidence 12222222221 2335788888 7877743 2 33 3333 2478999999
Q ss_pred EcCCCC
Q 023375 113 WSTGVG 118 (283)
Q Consensus 113 ~a~G~~ 118 (283)
+|||.+
T Consensus 335 lATGy~ 340 (341)
T PF13434_consen 335 LATGYR 340 (341)
T ss_dssp E---EE
T ss_pred EcCCcc
Confidence 999964
No 200
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.95 E-value=8.3e-05 Score=70.15 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=65.0
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC---------CCC---------C------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---------EIL---------S------------ 64 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~---------~~l---------~------------ 64 (283)
-.++|||+|+.|..+|..+++.+ .+|++|++. .+- |
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G--------------~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~ 68 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYG--------------AKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQ 68 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHH
Confidence 36999999999999999999987 899999852 010 0
Q ss_pred ------C--C--CH------------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEc--CC--cEEEeeEEE
Q 023375 65 ------S--F--DD------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG--TEVPYGLLV 112 (283)
Q Consensus 65 ------~--~--~~------------------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g--~~i~~d~vi 112 (283)
. + .+ .+.......+++.||+++.+.-.-++++.|... +| +++.+|.+|
T Consensus 69 ~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lV 148 (484)
T TIGR01438 69 ALKDSRNYGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFL 148 (484)
T ss_pred HHhhhhhcCcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEE
Confidence 0 0 00 112233345677899999885444566666654 33 369999999
Q ss_pred EcCCCCCc
Q 023375 113 WSTGVGPS 120 (283)
Q Consensus 113 ~a~G~~~~ 120 (283)
+|||.+|.
T Consensus 149 IATGs~p~ 156 (484)
T TIGR01438 149 IATGERPR 156 (484)
T ss_pred EecCCCCC
Confidence 99999986
No 201
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.94 E-value=0.00011 Score=58.39 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=28.8
Q ss_pred CCCEEE--eCceEEEeCC----eEEEcCCcEEEeeEEEEcCCC
Q 023375 81 SGVRLV--RGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 117 (283)
Q Consensus 81 ~gV~v~--~~~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~ 117 (283)
.+|++. ..+|++|... .+++++|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 466654 3478888654 477899999999999999995
No 202
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.94 E-value=0.00016 Score=67.21 Aligned_cols=92 Identities=24% Similarity=0.372 Sum_probs=66.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------------------------C----
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------------------------S---- 65 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------------------------~---- 65 (283)
-.++|||+|+.|..+|..+++++ .+|.++|+. .+.. .
T Consensus 5 yDvvVIG~GpaG~~aA~raa~~G--------------~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~ 70 (454)
T COG1249 5 YDVVVIGAGPAGYVAAIRAAQLG--------------LKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKE 70 (454)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccc
Confidence 47999999999999999999988 558999887 4421 0
Q ss_pred ---------CC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEcC--CcEEEeeEEEEcCCCCCc
Q 023375 66 ---------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILND--GTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 66 ---------~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~--g~~i~~d~vi~a~G~~~~ 120 (283)
++ ..+....+..+++.||+++.+...=++++.|...+ .+++.++.+|+|||.+|.
T Consensus 71 ~Gi~~~~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~ 148 (454)
T COG1249 71 YGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPR 148 (454)
T ss_pred cceecCCCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCc
Confidence 00 01122233445667999998844334467777765 478999999999999997
No 203
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.93 E-value=0.0001 Score=69.50 Aligned_cols=93 Identities=16% Similarity=0.273 Sum_probs=63.1
Q ss_pred cCeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCccEEEEEeCC---------CCC---------C----------
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN---------EIL---------S---------- 64 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~~V~li~~~---------~~l---------~---------- 64 (283)
.-.++|||||+.|..+|..+++. + .+|.|||+. .+. |
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g--------------~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~ 68 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYK--------------KRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQY 68 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcC--------------CEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHH
Confidence 35799999999999999999986 6 899999952 120 0
Q ss_pred --------CC-----------C------------HHHHHHHHHHHHh-CCCEEEeCceEEEeCCeEEEcC--------Cc
Q 023375 65 --------SF-----------D------------DRLRHYATTQLSK-SGVRLVRGIVKDVDSQKLILND--------GT 104 (283)
Q Consensus 65 --------~~-----------~------------~~~~~~~~~~l~~-~gV~v~~~~V~~v~~~~v~~~~--------g~ 104 (283)
.+ + .++.+...+.|++ .||+++.++-.-++++.|...+ .+
T Consensus 69 ~~~~~~~~~~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~ 148 (486)
T TIGR01423 69 MDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKE 148 (486)
T ss_pred HHHHHHhhccCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcce
Confidence 00 0 0112222333555 4899998854334556665531 24
Q ss_pred EEEeeEEEEcCCCCCc
Q 023375 105 EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 105 ~i~~d~vi~a~G~~~~ 120 (283)
++.+|.+|+|||.+|.
T Consensus 149 ~~~~d~lIIATGs~p~ 164 (486)
T TIGR01423 149 RLQAEHILLATGSWPQ 164 (486)
T ss_pred EEECCEEEEecCCCCC
Confidence 7999999999999986
No 204
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.92 E-value=0.00015 Score=66.60 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHHHHHHHHh-CCCEEEeC-ceEEEeCC--e--EEE---cCCcEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSK-SGVRLVRG-IVKDVDSQ--K--LIL---NDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~-~gV~v~~~-~V~~v~~~--~--v~~---~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+.+ .+++++.+ +|++++.+ . +++ .+++++.+|.||-|-|....
T Consensus 109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 33444444444 47999999 88888653 3 344 23457999999999998764
No 205
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.92 E-value=9.8e-05 Score=67.97 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCC
Q 023375 69 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGP 119 (283)
Q Consensus 69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~ 119 (283)
.+.+.+.+.+++.|++++.+ +|+++..+ .+.+ +++++.+|.||+|+|...
T Consensus 106 ~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 106 DVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 44555666677889999988 78888543 2333 566899999999999754
No 206
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.91 E-value=0.00017 Score=65.25 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=37.7
Q ss_pred HHHHHHHhC-CCEEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCchhh
Q 023375 73 YATTQLSKS-GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 123 (283)
Q Consensus 73 ~~~~~l~~~-gV~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~~~ 123 (283)
.+.+.+.+. |++++.+ +|++++.+.|.+.+|+ +.+|.||+|+|.....++
T Consensus 150 ~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~-i~a~~VV~A~G~~s~~l~ 201 (365)
T TIGR03364 150 ALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGD-VHADQVFVCPGADFETLF 201 (365)
T ss_pred HHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCc-EEeCEEEECCCCChhhhC
Confidence 344444554 9999988 8999987777777664 789999999998765543
No 207
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.91 E-value=3.1e-05 Score=74.47 Aligned_cols=89 Identities=21% Similarity=0.311 Sum_probs=64.9
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCCHHHHHHHHHHHHhC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS 81 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-------~--~~~~~~~~~~~~~l~~~ 81 (283)
...++|+|||+|++|+.+|..|++.+ .+|+++++. .+. | .++.+....-.+.+.+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMG--------------HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 45689999999999999999999877 889999975 321 1 34556666666778889
Q ss_pred CCEEEeC-ce-EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 82 GVRLVRG-IV-KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 82 gV~v~~~-~V-~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
|++++.+ .+ .++..+.+ ...+|.||+|+|..+.
T Consensus 201 Gv~~~~~~~~~~~~~~~~~------~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQL------EGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCEEEeCCEECCcCCHHHH------HhhCCEEEEeeCCCCC
Confidence 9999888 44 33221111 1248999999998654
No 208
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.90 E-value=0.00018 Score=65.77 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+.+. ++. +.+ +|++++.+ .|++++|+++.+|.||.|.|....
T Consensus 113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 344445555555 466 556 78887533 366678889999999999998764
No 209
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.90 E-value=0.00019 Score=65.68 Aligned_cols=55 Identities=29% Similarity=0.380 Sum_probs=38.0
Q ss_pred HHHHHHHh-CCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCC
Q 023375 73 YATTQLSK-SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 128 (283)
Q Consensus 73 ~~~~~l~~-~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l 128 (283)
.+.+.+.+ .|++++.+ +|+++..+ .|++++|+++.+|.||.|.|.... +.+.+++
T Consensus 117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~~~ 177 (395)
T PRK05732 117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA-LREALGI 177 (395)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh-hHHhhCC
Confidence 34444444 47999988 78887532 356678888999999999998765 3333343
No 210
>PRK06996 hypothetical protein; Provisional
Probab=97.89 E-value=0.00024 Score=65.26 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEcCC---cEEEeeEEEEcCCCCCchhhhccC
Q 023375 68 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDG---TEVPYGLLVWSTGVGPSTLVKSLD 127 (283)
Q Consensus 68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~~g---~~i~~d~vi~a~G~~~~~~~~~~~ 127 (283)
..+.+.+.+.+.+.|++++.+ ++++++.+ + +.+.++ +++.+|.||-|-|...+...+.++
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 456777788888889999998 88888543 3 445544 589999999999964443333333
No 211
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.89 E-value=0.00012 Score=67.01 Aligned_cols=50 Identities=18% Similarity=0.405 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCEEEeCceEEEeCC----eEEEcC------C--cEEEeeEEEEcCCCCCc
Q 023375 71 RHYATTQLSKSGVRLVRGIVKDVDSQ----KLILND------G--TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 71 ~~~~~~~l~~~gV~v~~~~V~~v~~~----~v~~~~------g--~~i~~d~vi~a~G~~~~ 120 (283)
.+.+.+...+.|++++.++|+++..+ .+++.+ + .++.+|.||-|.|....
T Consensus 95 d~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 95 DSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred HHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 34455556678999976677777532 244442 2 47899999999997654
No 212
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.88 E-value=0.00017 Score=65.64 Aligned_cols=51 Identities=14% Similarity=0.335 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCC-CEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 69 RLRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 69 ~~~~~~~~~l~~~g-V~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+.+.+.+.+.+.+ ++++.+ +++++..+ .|.++++ ++.+|.||-|-|....
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 34455555556654 888888 78887433 3566565 8999999999998765
No 213
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.88 E-value=7.5e-05 Score=71.60 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=75.4
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC------C-CCC-----CHHHHHHHHHHHHh
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI------L-SSF-----DDRLRHYATTQLSK 80 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~------l-~~~-----~~~~~~~~~~~l~~ 80 (283)
..+++|||.|..|.-+..++.+..++ ..+||++... +. + +.+ -+++.-...++.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~-----------~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~ 71 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPD-----------LYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEE 71 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcc-----------cceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHH
Confidence 36899999999999999999985432 3789998653 11 1 222 23444455678899
Q ss_pred CCCEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 81 SGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 81 ~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.||+++.+ +|..|+.+ .|++++|.++.||.+|+|||+.|.
T Consensus 72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccc
Confidence 99999999 89999876 577788999999999999999997
No 214
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.88 E-value=0.0002 Score=65.26 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--C--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 69 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 69 ~~~~~~~~~l~~-~gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+.+.+.+.+.+ .|++++.+ +|++++. + .+++++|+++.+|.||.|.|....
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 345555566666 49999988 8988854 3 366678888999999999997654
No 215
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.87 E-value=0.00019 Score=68.59 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeCC--e--EEEc--CC--cEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~--~--v~~~--~g--~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+.+. |++++.+ +|++++.+ + ++++ +| +++.+|.||-|.|....
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 344455555554 8999999 89988643 3 4454 46 47999999999998664
No 216
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.87 E-value=9.8e-05 Score=67.51 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCCEEEeC-ceEEEeC--C--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 81 SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 81 ~gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.|++++.+ +|++++. + .|++++|+++.+|.||-|.|..+.
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 36889888 7888854 3 477789999999999999998765
No 217
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.86 E-value=0.00029 Score=65.34 Aligned_cols=130 Identities=22% Similarity=0.187 Sum_probs=80.2
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-----------------------------
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL----------------------------- 63 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l----------------------------- 63 (283)
.++|+|||+|++|+..|.+|.+.+ .+++++|+. .+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g--------------~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~ 71 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREG--------------HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMM 71 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCC--------------CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhh
Confidence 579999999999999999999876 778888775 331
Q ss_pred --CCC-----------C-HHHHHHHHHHHHhCCC--EEEeC-ceEEEeCC-----eEEEcCC----cEEEeeEEEEcCCC
Q 023375 64 --SSF-----------D-DRLRHYATTQLSKSGV--RLVRG-IVKDVDSQ-----KLILNDG----TEVPYGLLVWSTGV 117 (283)
Q Consensus 64 --~~~-----------~-~~~~~~~~~~l~~~gV--~v~~~-~V~~v~~~-----~v~~~~g----~~i~~d~vi~a~G~ 117 (283)
+.+ + .++.+|++...+..++ .+..+ +|..|+.. .|.+.++ ++.-+|.|++|+|.
T Consensus 72 ~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh 151 (448)
T KOG1399|consen 72 GYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGH 151 (448)
T ss_pred cCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccC
Confidence 000 1 2567788888888776 34555 55555432 4666543 36779999999999
Q ss_pred CCchhhhcc-CCCC-CCCCccccCCCccc---CCCCCEEEecccc
Q 023375 118 GPSTLVKSL-DLPK-SPGGRIGIDEWLRV---PSVQDVFAVGDCS 157 (283)
Q Consensus 118 ~~~~~~~~~-~l~~-~~~g~i~Vd~~l~~---~~~~~VfaiGD~a 157 (283)
-..+-+... +... .-.|.+.-....+. -....|.+||--.
T Consensus 152 ~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~ 196 (448)
T KOG1399|consen 152 YVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN 196 (448)
T ss_pred cCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCc
Confidence 842322222 2111 12343333322222 1246788888544
No 218
>PRK14727 putative mercuric reductase; Provisional
Probab=97.85 E-value=0.00016 Score=68.12 Aligned_cols=94 Identities=24% Similarity=0.346 Sum_probs=63.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC---------------------------C
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------------------------S 64 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------------------------~ 64 (283)
...+++|||+|+.|+.+|..+++.+ .+|++||++ .+. +
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g--------------~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~ 80 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHG--------------ARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNP 80 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhcc
Confidence 3468999999999999999999987 889999874 221 0
Q ss_pred ---------CCCHH-HH-------H-----HHHHHHHhC-CCEEEeCceEEEeCCeEE--EcCCc--EEEeeEEEEcCCC
Q 023375 65 ---------SFDDR-LR-------H-----YATTQLSKS-GVRLVRGIVKDVDSQKLI--LNDGT--EVPYGLLVWSTGV 117 (283)
Q Consensus 65 ---------~~~~~-~~-------~-----~~~~~l~~~-gV~v~~~~V~~v~~~~v~--~~~g~--~i~~d~vi~a~G~ 117 (283)
.++.. +. . ...+.++.. ||+++.+...-++++.+. +.+|+ ++.+|.+|+|||.
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs 160 (479)
T PRK14727 81 FDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGS 160 (479)
T ss_pred ccCcccCCCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCC
Confidence 01110 00 0 012223333 889888765445555444 45663 6999999999999
Q ss_pred CCc
Q 023375 118 GPS 120 (283)
Q Consensus 118 ~~~ 120 (283)
+|.
T Consensus 161 ~p~ 163 (479)
T PRK14727 161 TPT 163 (479)
T ss_pred CCC
Confidence 886
No 219
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.84 E-value=0.0002 Score=68.57 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=63.3
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-------------------------------
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------------------------------- 63 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l------------------------------- 63 (283)
.|+|||||++|+++|..++..+ .+|.++++. ...
T Consensus 2 DViVIGaG~AGl~aA~ala~~G--------------~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~ 67 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMG--------------AKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKA 67 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCC--------------CCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHH
Confidence 5899999999999999999877 666666643 110
Q ss_pred ----------------C-------CCC-HHHHHHHHHHHHhC-CCEEEeCceEEEe---CC---eEEEcCCcEEEeeEEE
Q 023375 64 ----------------S-------SFD-DRLRHYATTQLSKS-GVRLVRGIVKDVD---SQ---KLILNDGTEVPYGLLV 112 (283)
Q Consensus 64 ----------------~-------~~~-~~~~~~~~~~l~~~-gV~v~~~~V~~v~---~~---~v~~~~g~~i~~d~vi 112 (283)
| .++ +.+...+.+.+++. +++++.+.|+++. .+ +|.+.+|.++.++.||
T Consensus 68 ~d~~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VI 147 (617)
T TIGR00136 68 ADKAGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVI 147 (617)
T ss_pred HHhhceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEE
Confidence 0 001 11223455556666 7899877666652 22 4778888899999999
Q ss_pred EcCCCCC
Q 023375 113 WSTGVGP 119 (283)
Q Consensus 113 ~a~G~~~ 119 (283)
+|+|...
T Consensus 148 LATGtfL 154 (617)
T TIGR00136 148 ITTGTFL 154 (617)
T ss_pred EccCccc
Confidence 9999984
No 220
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.82 E-value=0.00036 Score=63.36 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=35.3
Q ss_pred HHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhhcc
Q 023375 76 TQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSL 126 (283)
Q Consensus 76 ~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~ 126 (283)
+.+.+.|++++.+ +|+++..+ .|.+++| ++.+|.||.|+|.....+...+
T Consensus 157 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~ 211 (376)
T PRK11259 157 RLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPPL 211 (376)
T ss_pred HHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhcccc
Confidence 3445678998887 78887542 2455555 7999999999998766555433
No 221
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.81 E-value=0.0003 Score=63.94 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375 72 HYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 127 (283)
Q Consensus 72 ~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~ 127 (283)
..+.+.+++.|++++.+ +|++++.+ . |.++++ ++.+|.||+|+|.....+...++
T Consensus 149 ~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g 208 (380)
T TIGR01377 149 RALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLG 208 (380)
T ss_pred HHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcc
Confidence 33444456678999888 78888653 2 444444 79999999999987655555444
No 222
>PRK06185 hypothetical protein; Provisional
Probab=97.80 E-value=0.00037 Score=64.10 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=38.0
Q ss_pred HHHHHHHHHHh-CCCEEEeC-ceEEEeC--Ce---EEE--cCCc-EEEeeEEEEcCCCCCchhhhccCCC
Q 023375 70 LRHYATTQLSK-SGVRLVRG-IVKDVDS--QK---LIL--NDGT-EVPYGLLVWSTGVGPSTLVKSLDLP 129 (283)
Q Consensus 70 ~~~~~~~~l~~-~gV~v~~~-~V~~v~~--~~---v~~--~~g~-~i~~d~vi~a~G~~~~~~~~~~~l~ 129 (283)
+.+.+.+.+.+ .||+++.+ +++++.. +. |.+ .+|+ ++.+|.||.|.|.... +-+.++++
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~gi~ 178 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALAGLE 178 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHcCCC
Confidence 44445555555 48999988 7888753 32 333 3564 7999999999998764 33334443
No 223
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.78 E-value=0.00022 Score=65.90 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=30.1
Q ss_pred CCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 82 GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 82 gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
++.++.+ +|++++.+ .+.+++|+++.+|.||.|.|....
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 3556777 78888643 366788989999999999998764
No 224
>PRK10015 oxidoreductase; Provisional
Probab=97.78 E-value=0.00029 Score=65.44 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEeC--CeEE--EcCCcEEEeeEEEEcCCCCC
Q 023375 71 RHYATTQLSKSGVRLVRG-IVKDVDS--QKLI--LNDGTEVPYGLLVWSTGVGP 119 (283)
Q Consensus 71 ~~~~~~~l~~~gV~v~~~-~V~~v~~--~~v~--~~~g~~i~~d~vi~a~G~~~ 119 (283)
.+.+.+..++.|++++.+ +|+++.. +.+. ..++.++.+|.||.|.|...
T Consensus 111 d~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 111 DPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 344556667789999998 8888753 3332 23456799999999999744
No 225
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=8.6e-05 Score=65.36 Aligned_cols=107 Identities=16% Similarity=0.208 Sum_probs=75.2
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHH--HhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDV--RQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG 88 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~--~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~ 88 (283)
+.+-.|+||||||.|..+|.+.++.+-++- ..+|.. +-.+..=||.- .....-++++...+++..+++.|++...
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGG--QvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~ 286 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG--QVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNL 286 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCC--eeccccchhheeccccccchHHHHHHHHHHhhcCchhhhh
Confidence 566799999999999999999988763210 111111 00111111211 2223457899999999999999999876
Q ss_pred -ceEEEeC----C---eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 89 -IVKDVDS----Q---KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 89 -~V~~v~~----~---~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+++++ + .|++++|..+.+.++|++||.+-.
T Consensus 287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWR 326 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWR 326 (520)
T ss_pred hhhhcceecCCCCccEEEEecCCceeccceEEEecCcchh
Confidence 6666655 2 588999999999999999998754
No 226
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.77 E-value=5.7e-05 Score=63.98 Aligned_cols=92 Identities=25% Similarity=0.313 Sum_probs=62.6
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCE----------E
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR----------L 85 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~----------v 85 (283)
+++|||||.+|+.+|..|+.+.+. .+|.|+.++.+.... .--+.+-++|++..|+ +
T Consensus 1 kfivvgggiagvscaeqla~~~ps------------a~illitass~vksv--tn~~~i~~ylekfdv~eq~~~elg~~f 66 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPS------------AEILLITASSFVKSV--TNYQKIGQYLEKFDVKEQNCHELGPDF 66 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCC------------CcEEEEeccHHHHHH--hhHHHHHHHHHhcCccccchhhhcccH
Confidence 479999999999999999987532 799999887544321 1112233344444332 1
Q ss_pred E--eCceEEEe--CCeEEEcCCcEEEeeEEEEcCCCCCch
Q 023375 86 V--RGIVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPST 121 (283)
Q Consensus 86 ~--~~~V~~v~--~~~v~~~~g~~i~~d~vi~a~G~~~~~ 121 (283)
. .+.|..++ +..+.+++|+++.|+.+.+|+|.+|.-
T Consensus 67 ~~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 67 RRFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred HHHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcce
Confidence 1 11233332 346899999999999999999999973
No 227
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.75 E-value=0.00016 Score=67.59 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=32.1
Q ss_pred CCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 81 SGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 81 ~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.||+++.+...-.+...|.+.+|+++.+|.+|+|||.+|.
T Consensus 105 ~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~ 144 (452)
T TIGR03452 105 PNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPY 144 (452)
T ss_pred CCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCC
Confidence 6899888743323566788888888999999999999986
No 228
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.75 E-value=8.2e-05 Score=68.53 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=29.0
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||||.+|+|+|..|++.+ .+|+|+|+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G--------------~~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG--------------VPVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecc
Confidence 6999999999999999999987 999999975
No 229
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.73 E-value=0.00046 Score=63.48 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhh
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFI 37 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~ 37 (283)
.+|+||||||+|..+|..|++.+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G 23 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG 23 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 37999999999999999999876
No 230
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.72 E-value=0.001 Score=61.08 Aligned_cols=130 Identities=17% Similarity=0.174 Sum_probs=86.5
Q ss_pred EEEEeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe---EEEcCC--cEEEeeEEEEcCCCC-Cchhh
Q 023375 54 VTLIEANEILSS-FDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDG--TEVPYGLLVWSTGVG-PSTLV 123 (283)
Q Consensus 54 V~li~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~---v~~~~g--~~i~~d~vi~a~G~~-~~~~~ 123 (283)
..++|-..+-|. .+..+.+.+.+.++++|++++.+ +|.++. ++. |.++++ .++.+|.+|+|+|.. +..+.
T Consensus 248 ~~v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 248 LTLCELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred CCEEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence 344444433343 34678888999999999999998 888875 332 444555 479999999999998 66554
Q ss_pred hcc--------CCCC----CC---------------CCccccCCCccc----CCCCCEEEeccccccCcCCCCcCCCcch
Q 023375 124 KSL--------DLPK----SP---------------GGRIGIDEWLRV----PSVQDVFAVGDCSGYLESTGKTVLPALA 172 (283)
Q Consensus 124 ~~~--------~l~~----~~---------------~g~i~Vd~~l~~----~~~~~VfaiGD~a~~~~~~~~~~~p~~~ 172 (283)
+.+ ++++ ++ +-.|.+|+.||. +..+|+|++|-+....|+... -...
T Consensus 328 a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~--gcG~- 404 (419)
T TIGR03378 328 AEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE--GCGS- 404 (419)
T ss_pred hhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc--CCCc-
Confidence 433 2222 00 113778988883 137999999999876654110 0112
Q ss_pred HHHHHHHHHHHHHH
Q 023375 173 QVAERQGKYLFSLL 186 (283)
Q Consensus 173 ~~A~~qg~~~a~~i 186 (283)
-+|+..|-++|++|
T Consensus 405 GVai~Ta~~aa~~i 418 (419)
T TIGR03378 405 GVAVSTALHAAEQI 418 (419)
T ss_pred hhHHHHHHHHHHhh
Confidence 27888899998876
No 231
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.72 E-value=0.00036 Score=65.33 Aligned_cols=50 Identities=20% Similarity=0.428 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCEEEeCceEEEe--CC----eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 71 RHYATTQLSKSGVRLVRGIVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 71 ~~~~~~~l~~~gV~v~~~~V~~v~--~~----~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+.+.+...++||+++.++|.++. ++ .|++++|+++.+|.+|=|+|.+..
T Consensus 157 d~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 444556666889999988776653 33 477889999999999999998664
No 232
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.70 E-value=0.00048 Score=66.02 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeCC--eE--EE--cCCc-EEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ--KL--IL--NDGT-EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~--~v--~~--~~g~-~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+.+. +++++.+ ++++++.+ .+ ++ .+++ ++.+|.||.|.|..+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 334455555554 7999999 88888643 33 33 2454 6899999999998765
No 233
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.69 E-value=0.00054 Score=63.82 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCC---CEEEeC-ceEEEeC---------C--eEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKSG---VRLVRG-IVKDVDS---------Q--KLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~g---V~v~~~-~V~~v~~---------~--~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+...+.+.+.+.+ |+++.+ +|++++. + .|++.+|+++.+|.||-|-|....
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 4444555566654 999998 8888852 2 467788999999999999998665
No 234
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.66 E-value=0.00074 Score=61.92 Aligned_cols=49 Identities=8% Similarity=0.035 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeC-C----eEEE-cCCc--EEEeeEEEEcCCCCCc
Q 023375 72 HYATTQLSKSGVRLVRG-IVKDVDS-Q----KLIL-NDGT--EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 72 ~~~~~~l~~~gV~v~~~-~V~~v~~-~----~v~~-~~g~--~i~~d~vi~a~G~~~~ 120 (283)
+.+.+...+.|++++.+ ++++++. + .|++ .+|+ ++.+|.||-|-|....
T Consensus 107 ~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 107 RDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 33444446679999998 7887754 2 3566 3664 6899999999998765
No 235
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.65 E-value=0.00082 Score=61.92 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=37.3
Q ss_pred HHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEcCC-----cEEEeeEEEEcCCCCCchhhhccC
Q 023375 74 ATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG-----TEVPYGLLVWSTGVGPSTLVKSLD 127 (283)
Q Consensus 74 ~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g-----~~i~~d~vi~a~G~~~~~~~~~~~ 127 (283)
+.+.+++.|++++.+ +|++++. +. +.+.++ .++.+|.||+|+|.....+...++
T Consensus 203 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 203 LAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 345566789999998 7888854 33 333332 378999999999987765554433
No 236
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.64 E-value=0.00063 Score=62.54 Aligned_cols=91 Identities=23% Similarity=0.358 Sum_probs=63.8
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC------------------CCCC--------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------------------SSFD-------- 67 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l------------------~~~~-------- 67 (283)
..|+|||+||+|..+|..|++.+ .+|.++|+. .+- +...
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G--------------~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~ 69 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAG--------------LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVT 69 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcC--------------CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeee
Confidence 57999999999999999999987 777777764 220 0010
Q ss_pred -------------------------HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEEEcCC
Q 023375 68 -------------------------DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTG 116 (283)
Q Consensus 68 -------------------------~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G 116 (283)
..+-+.+.+..++.|++++.+ ++..+.. ++ .+..++.++.++.||.|.|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG 149 (396)
T COG0644 70 GARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADG 149 (396)
T ss_pred eeEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCC
Confidence 123334555667789999998 7877753 22 2223346899999999999
Q ss_pred CCC
Q 023375 117 VGP 119 (283)
Q Consensus 117 ~~~ 119 (283)
..+
T Consensus 150 ~~s 152 (396)
T COG0644 150 VNS 152 (396)
T ss_pred cch
Confidence 754
No 237
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.64 E-value=0.0006 Score=63.92 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=33.3
Q ss_pred HHHHHhCCCEEEeC-ceEEEeCCe---EEEcCCcEEEeeEEEEcCCCCCch
Q 023375 75 TTQLSKSGVRLVRG-IVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPST 121 (283)
Q Consensus 75 ~~~l~~~gV~v~~~-~V~~v~~~~---v~~~~g~~i~~d~vi~a~G~~~~~ 121 (283)
.+.+++.|++++.+ .|++++.+. |++.+| ++.+|.||+|+|.....
T Consensus 190 ~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~~ 239 (460)
T TIGR03329 190 RRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMAS 239 (460)
T ss_pred HHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEcccccccc
Confidence 34445778999888 788886542 555555 69999999999976443
No 238
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.62 E-value=0.00049 Score=67.09 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=28.7
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.++|||+|+.|..+|..+++++ .+|.|||..
T Consensus 117 yDviVIG~G~gG~~aA~~aa~~G--------------~kV~lie~~ 148 (659)
T PTZ00153 117 YDVGIIGCGVGGHAAAINAMERG--------------LKVIIFTGD 148 (659)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence 37999999999999999999988 889999854
No 239
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.00015 Score=67.40 Aligned_cols=90 Identities=24% Similarity=0.386 Sum_probs=60.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC------CCC---------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------SSF--------------------- 66 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l------~~~--------------------- 66 (283)
-.|+|||||.+|+|+|...++++ .++.|+..+ +-+ |..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG--------------~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~ 70 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMG--------------AKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGK 70 (621)
T ss_pred CceEEECCCccchHHHHhhhccC--------------CeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHH
Confidence 57999999999999999999988 555555443 110 000
Q ss_pred ---------------------------CH-HHHHHHHHHHHh-CCCEEEeCceEEEe--C----CeEEEcCCcEEEeeEE
Q 023375 67 ---------------------------DD-RLRHYATTQLSK-SGVRLVRGIVKDVD--S----QKLILNDGTEVPYGLL 111 (283)
Q Consensus 67 ---------------------------~~-~~~~~~~~~l~~-~gV~v~~~~V~~v~--~----~~v~~~~g~~i~~d~v 111 (283)
+. ..+..+++.++. .++.++.+.|+++. + .+|++.+|..+.++.|
T Consensus 71 ~~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aV 150 (621)
T COG0445 71 AADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAV 150 (621)
T ss_pred hhhhcCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEE
Confidence 00 122333444443 46777777555542 2 2588899999999999
Q ss_pred EEcCCCC
Q 023375 112 VWSTGVG 118 (283)
Q Consensus 112 i~a~G~~ 118 (283)
|++||.-
T Consensus 151 VlTTGTF 157 (621)
T COG0445 151 VLTTGTF 157 (621)
T ss_pred EEeeccc
Confidence 9999983
No 240
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.59 E-value=0.00033 Score=63.35 Aligned_cols=98 Identities=19% Similarity=0.281 Sum_probs=68.7
Q ss_pred HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC--CCC---------CHHHHHHHHHHH
Q 023375 11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--SSF---------DDRLRHYATTQL 78 (283)
Q Consensus 11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l--~~~---------~~~~~~~~~~~l 78 (283)
.-+.++|||+|+|..|+.+...|-... .+|++|.+. .++ |-+ -..+.+-+....
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~--------------YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~ 117 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSL--------------YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIA 117 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhccccc--------------cceEEeccccceEEeeccCCccccceeehhhhhhHHHHh
Confidence 345689999999999999988886554 899999986 322 333 234555566666
Q ss_pred HhC--CCEEEeCceEEEeCC--eEE----EcCC----cEEEeeEEEEcCCCCCchh
Q 023375 79 SKS--GVRLVRGIVKDVDSQ--KLI----LNDG----TEVPYGLLVWSTGVGPSTL 122 (283)
Q Consensus 79 ~~~--gV~v~~~~V~~v~~~--~v~----~~~g----~~i~~d~vi~a~G~~~~~~ 122 (283)
++. +++++...-..++++ .|. ++++ -.+.||.+|+|+|..++++
T Consensus 118 r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 118 RKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred hccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 655 566666655666665 333 2344 3689999999999999853
No 241
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.59 E-value=0.0011 Score=61.92 Aligned_cols=94 Identities=21% Similarity=0.368 Sum_probs=61.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC----------------------------
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------------------------- 63 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l---------------------------- 63 (283)
...+|+||||||+|.-+|..|++.+ .+|.|+|+. ...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G--------------~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~ 103 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGG--------------IETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTK 103 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhh
Confidence 3468999999999999999999876 556666543 100
Q ss_pred --------------------CC---CC-HHHHHHHHHHHHhCCCEEEeCceEEEeC-----C--eEEEcC-------C--
Q 023375 64 --------------------SS---FD-DRLRHYATTQLSKSGVRLVRGIVKDVDS-----Q--KLILND-------G-- 103 (283)
Q Consensus 64 --------------------~~---~~-~~~~~~~~~~l~~~gV~v~~~~V~~v~~-----~--~v~~~~-------g-- 103 (283)
+. ++ ..+.+.+.+...+.|++++.+++.+++. + .|++.+ |
T Consensus 104 ~~~~~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~ 183 (450)
T PLN00093 104 MKMISPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTP 183 (450)
T ss_pred heEecCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCc
Confidence 00 01 1223344455567799998776666641 1 244432 3
Q ss_pred cEEEeeEEEEcCCCCCc
Q 023375 104 TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 104 ~~i~~d~vi~a~G~~~~ 120 (283)
.++.+|.||-|.|....
T Consensus 184 ~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 184 KTLEVDAVIGADGANSR 200 (450)
T ss_pred cEEEeCEEEEcCCcchH
Confidence 47999999999997553
No 242
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.002 Score=59.43 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=27.4
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++|+|||||++|+.+|.+|.+..+. ...|+++|+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~-----------~~~Isi~e~~ 36 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRP-----------SGLISIFEPR 36 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCC-----------CCceEEeccc
Confidence 5899999999999999999876521 2337777764
No 243
>PRK07538 hypothetical protein; Provisional
Probab=97.57 E-value=0.00098 Score=61.53 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.9
Q ss_pred CeEEEEccCcHHHHHHHHHHHhh
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFI 37 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~ 37 (283)
++|+|||||++|+-+|..|++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G 23 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG 23 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC
Confidence 47999999999999999998875
No 244
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.57 E-value=7.4e-05 Score=69.38 Aligned_cols=99 Identities=29% Similarity=0.407 Sum_probs=26.1
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCC------------C------------------
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------S------------------ 65 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~------------~------------------ 65 (283)
.|||||||++|+.+|..+++.+ .+|.|||+...+. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--------------~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~ 66 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--------------AKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNR 66 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--------------S-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHS
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHH
Confidence 4899999999999999999988 8999999863321 0
Q ss_pred --------------------CC-HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEEcC---CcEEEeeEEEEcC
Q 023375 66 --------------------FD-DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILND---GTEVPYGLLVWST 115 (283)
Q Consensus 66 --------------------~~-~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~---g~~i~~d~vi~a~ 115 (283)
++ ......+.+.+.+.||+++.+ .|.++..+ +|++.+ ..++.++.+|=||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaT 146 (428)
T PF12831_consen 67 LRARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDAT 146 (428)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred Hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 011122344556789999988 78777543 455543 4679999999999
Q ss_pred CCCCchhhhccCCCC
Q 023375 116 GVGPSTLVKSLDLPK 130 (283)
Q Consensus 116 G~~~~~~~~~~~l~~ 130 (283)
|. -.+....|.+.
T Consensus 147 G~--g~l~~~aG~~~ 159 (428)
T PF12831_consen 147 GD--GDLAALAGAPY 159 (428)
T ss_dssp ---------------
T ss_pred cc--ccccccccccc
Confidence 94 23444445443
No 245
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.55 E-value=0.0013 Score=60.41 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeC---C--eEEEc-CCc--EEEeeEEEEcCCCCCc
Q 023375 72 HYATTQLSKSGVRLVRG-IVKDVDS---Q--KLILN-DGT--EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 72 ~~~~~~l~~~gV~v~~~-~V~~v~~---~--~v~~~-~g~--~i~~d~vi~a~G~~~~ 120 (283)
..+.+.+.+.|++++.+ +++++.. + .|++. +|+ ++.+|.||-|-|....
T Consensus 107 ~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 107 RDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 33445556678888877 6555522 2 57775 775 6899999999998664
No 246
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.55 E-value=0.001 Score=58.58 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEe----CC---eEEEcCCcEEEeeEEEEcCCCCCchhhh
Q 023375 71 RHYATTQLSKSGVRLVRG-IVKDVD----SQ---KLILNDGTEVPYGLLVWSTGVGPSTLVK 124 (283)
Q Consensus 71 ~~~~~~~l~~~gV~v~~~-~V~~v~----~~---~v~~~~g~~i~~d~vi~a~G~~~~~~~~ 124 (283)
.+.++..+++.|+.++.+ .|..++ ++ .|.+++|..+.++.+|+++|..-+.++.
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcC
Confidence 344566677899999998 676665 22 5778899999999999999987776665
No 247
>PRK06126 hypothetical protein; Provisional
Probab=97.51 E-value=0.00093 Score=64.02 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=33.8
Q ss_pred HHHHHHHHh-CCCEEEeC-ceEEEeCC--e--EEE---cCCc--EEEeeEEEEcCCCCCc
Q 023375 72 HYATTQLSK-SGVRLVRG-IVKDVDSQ--K--LIL---NDGT--EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 72 ~~~~~~l~~-~gV~v~~~-~V~~v~~~--~--v~~---~~g~--~i~~d~vi~a~G~~~~ 120 (283)
..+.+.+++ .+++++.+ +|++++.+ + +++ .+|+ ++.+|.||.|.|....
T Consensus 130 ~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 130 PILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 334444444 48999999 89988643 2 333 2353 6899999999998664
No 248
>PRK11445 putative oxidoreductase; Provisional
Probab=97.45 E-value=0.0019 Score=58.29 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=30.8
Q ss_pred HhCCCEEEeC-ceEEEeC--Ce--EEE-cCCc--EEEeeEEEEcCCCCCc
Q 023375 79 SKSGVRLVRG-IVKDVDS--QK--LIL-NDGT--EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 79 ~~~gV~v~~~-~V~~v~~--~~--v~~-~~g~--~i~~d~vi~a~G~~~~ 120 (283)
.+.||+++.+ ++++++. ++ |.+ ++|+ ++.+|.||.|.|....
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 3568999988 7888754 33 443 4564 6899999999998654
No 249
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.44 E-value=0.0027 Score=52.81 Aligned_cols=92 Identities=21% Similarity=0.330 Sum_probs=56.8
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-------CC------------------
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------FD------------------ 67 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-------~~------------------ 67 (283)
...|+|||+||+|+.+|.+|++.+ .+|.++|++ .+-.. ++
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g--------------~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~ 82 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAG--------------LKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIP 82 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHT--------------S-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT--
T ss_pred cCCEEEECCChhHHHHHHHHHHCC--------------CeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCce
Confidence 368999999999999999999987 999999986 33110 10
Q ss_pred -------------HH-HHHHHHHHHHhCCCEEEeC-ceEEE--eC-C---eEEEc-----------CCcEEEeeEEEEcC
Q 023375 68 -------------DR-LRHYATTQLSKSGVRLVRG-IVKDV--DS-Q---KLILN-----------DGTEVPYGLLVWST 115 (283)
Q Consensus 68 -------------~~-~~~~~~~~l~~~gV~v~~~-~V~~v--~~-~---~v~~~-----------~g~~i~~d~vi~a~ 115 (283)
.+ .+..+.+.+ +.|++++.. .|+++ .+ + +|.+. |--++.+..||=+|
T Consensus 83 y~~~~~g~~v~d~~~~~s~L~s~a~-~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaT 161 (230)
T PF01946_consen 83 YEEYGDGYYVADSVEFTSTLASKAI-DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDAT 161 (230)
T ss_dssp -EE-SSEEEES-HHHHHHHHHHHHH-TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE--
T ss_pred eEEeCCeEEEEcHHHHHHHHHHHHh-cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCC
Confidence 11 222233333 489999988 77765 33 3 23321 22479999999999
Q ss_pred CCCCc
Q 023375 116 GVGPS 120 (283)
Q Consensus 116 G~~~~ 120 (283)
|....
T Consensus 162 GHda~ 166 (230)
T PF01946_consen 162 GHDAE 166 (230)
T ss_dssp -SSSS
T ss_pred CCchH
Confidence 98765
No 250
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00049 Score=63.07 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhh
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFI 37 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~ 37 (283)
-.|+|||||.+|+|+|...++.+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~G 51 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLG 51 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcC
Confidence 38999999999999999999988
No 251
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.42 E-value=0.00063 Score=67.81 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=28.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++|+|||||++|+-+|..|++.+. +.+|+|+|+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~------------G~~V~vlEr~ 34 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDP------------AHEVTVVERN 34 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCC------------CCeEEEEecC
Confidence 479999999999999999988621 1788888876
No 252
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.39 E-value=0.0016 Score=62.41 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHhCCCEEEeC-ceEEEeC--Ce---EEEc---CC--cEEEeeEEEEcCCCCCchhhhccC
Q 023375 78 LSKSGVRLVRG-IVKDVDS--QK---LILN---DG--TEVPYGLLVWSTGVGPSTLVKSLD 127 (283)
Q Consensus 78 l~~~gV~v~~~-~V~~v~~--~~---v~~~---~g--~~i~~d~vi~a~G~~~~~~~~~~~ 127 (283)
..++|++++++ +|+++.. +. |++. ++ .++.++.||.|+|.....+.+..+
T Consensus 159 A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 159 AKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred HHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC
Confidence 34779999988 7888753 22 4442 23 478999999999987766554433
No 253
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.39 E-value=0.0018 Score=63.55 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHhCCCEEEeC-ceEEEeC--Ce--EEEcCCcEEEeeEEEEcCCCCCchhhh
Q 023375 77 QLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVK 124 (283)
Q Consensus 77 ~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~~i~~d~vi~a~G~~~~~~~~ 124 (283)
.+++ |++++.+ +|++++. +. |.+.+|+.+.+|.||.|+|.....+..
T Consensus 417 ~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~ 468 (662)
T PRK01747 417 LAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQ 468 (662)
T ss_pred hccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccc
Confidence 3345 7888887 7887753 33 455566677899999999987765444
No 254
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.38 E-value=0.0014 Score=63.84 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=29.9
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++..+|+|||||++|+-+|..|++.+ .+|+|+|+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~G--------------i~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKG--------------FDVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecc
Confidence 56689999999999999999999876 677777653
No 255
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.38 E-value=0.00081 Score=61.78 Aligned_cols=71 Identities=24% Similarity=0.329 Sum_probs=50.8
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC-------CCHH------HHHHHHHH
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------FDDR------LRHYATTQ 77 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~-------~~~~------~~~~~~~~ 77 (283)
.-.++++|||||.+|+++|.+|++.+ .+|+|+|.+ .+... ||.. +.-.+.+.
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G--------------~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v 187 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMG--------------FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEV 187 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcC--------------CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhh
Confidence 34579999999999999999999998 999999987 44221 1111 11222222
Q ss_pred HHhCCCEEEeC-ceEEEeCC
Q 023375 78 LSKSGVRLVRG-IVKDVDSQ 96 (283)
Q Consensus 78 l~~~gV~v~~~-~V~~v~~~ 96 (283)
-..-+|++++. +|++|++.
T Consensus 188 ~~hp~i~l~TyaeV~ev~G~ 207 (622)
T COG1148 188 SNHPNIELITYAEVEEVSGS 207 (622)
T ss_pred ccCCceeeeeeeeeeeeccc
Confidence 33457999998 89998875
No 256
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.36 E-value=0.002 Score=61.18 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEE--cCC--cEEEeeEEEEcCCC
Q 023375 70 LRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLIL--NDG--TEVPYGLLVWSTGV 117 (283)
Q Consensus 70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~--~~g--~~i~~d~vi~a~G~ 117 (283)
+...+.+.+++.||+++++ +|+++..+ +|.+ .++ .++.++.||+|+|.
T Consensus 192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG 249 (506)
T PRK06481 192 LVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGG 249 (506)
T ss_pred HHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCC
Confidence 3344555567788999888 78887542 2434 333 36889999999984
No 257
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.35 E-value=0.0028 Score=58.31 Aligned_cols=52 Identities=10% Similarity=0.058 Sum_probs=35.9
Q ss_pred HHHHHhCCCEEEeC-ceEEEeC---Ce---EEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375 75 TTQLSKSGVRLVRG-IVKDVDS---QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 127 (283)
Q Consensus 75 ~~~l~~~gV~v~~~-~V~~v~~---~~---v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~ 127 (283)
.+.+.+.|++++.+ +|++++. +. |.+.+| ++.++.||+|+|.....+.+.++
T Consensus 190 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g 248 (407)
T TIGR01373 190 ARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAG 248 (407)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcC
Confidence 34456789999988 8888852 22 455566 69999999998876654444333
No 258
>PLN02985 squalene monooxygenase
Probab=97.30 E-value=0.0028 Score=60.26 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.7
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhh
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFI 37 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~ 37 (283)
....+|+|||||++|+-+|..|++.+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G 66 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDG 66 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcC
Confidence 34468999999999999999999866
No 259
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.26 E-value=0.0013 Score=60.08 Aligned_cols=91 Identities=29% Similarity=0.508 Sum_probs=63.7
Q ss_pred EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC---CC-CCCCH----------HHHHHHHHHHHhCC
Q 023375 17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---IL-SSFDD----------RLRHYATTQLSKSG 82 (283)
Q Consensus 17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~---~l-~~~~~----------~~~~~~~~~l~~~g 82 (283)
++|||+|..|..+|..+.+... +.+|+++.... .. +..+. .+..... ...+.+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~------------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 67 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLL------------AAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATG 67 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCC------------CCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhC
Confidence 5899999999999999876542 26777666542 11 11111 1111111 124678
Q ss_pred CEEEeC-ceEEEeCC--eEEEcCCcEEEeeEEEEcCCCCCch
Q 023375 83 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST 121 (283)
Q Consensus 83 V~v~~~-~V~~v~~~--~v~~~~g~~i~~d~vi~a~G~~~~~ 121 (283)
+++..+ +|++++.. .+.+.+| ++.+|.+++++|.+|..
T Consensus 68 i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 68 IDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred CEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccC
Confidence 999998 89999864 6788888 89999999999999984
No 260
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0049 Score=57.56 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=32.1
Q ss_pred HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+.-+.|+|+|||+|.+|+++|.+|++.+ .+|+++.++
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~g--------------a~vt~~qRs 207 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVG--------------ASVTLSQRS 207 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcC--------------CeeEEEecC
Confidence 3457799999999999999999999987 778888775
No 261
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.22 E-value=0.0055 Score=57.63 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEe--CCe---EEEcCCcEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKSGVRLVRGIVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~gV~v~~~~V~~v~--~~~---v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+++.||+++.+.++.+. ++. +.. +++.+.++.||+|||..+.
T Consensus 122 i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 122 IIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 4444555556677877655554443 222 333 5667899999999998765
No 262
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.20 E-value=0.0044 Score=58.57 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHh----CC--CEEEeC-ceEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCchhhhccCCCC
Q 023375 69 RLRHYATTQLSK----SG--VRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 130 (283)
Q Consensus 69 ~~~~~~~~~l~~----~g--V~v~~~-~V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~l~~ 130 (283)
.+...+.+.+++ .| ++++++ +|++++.+ .|.+.+| ++.+|.||+|+|.....+.+.+++..
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~ 284 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGL 284 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCC
Confidence 344555566667 67 788888 89988653 3555556 69999999999988877777777643
No 263
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.15 E-value=0.00073 Score=45.81 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=25.8
Q ss_pred EEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375 19 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61 (283)
Q Consensus 19 VvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~ 61 (283)
|||||++|+.+|..|++.+ .+|+|+|+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g--------------~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--------------YRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--------------SEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCC--------------CcEEEEecCc
Confidence 8999999999999999876 8999999973
No 264
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.10 E-value=0.0067 Score=59.24 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCC--CEEEeC-ceEEEeCC-------eEEEc------CC--cEEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKSG--VRLVRG-IVKDVDSQ-------KLILN------DG--TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~g--V~v~~~-~V~~v~~~-------~v~~~------~g--~~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+.+.+.+ +++..+ ++++++.+ .++++ +| +++.+|.||-|=|.+..
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH
Confidence 4455556666666 467777 78887532 24554 35 57999999999998653
No 265
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.10 E-value=0.01 Score=53.30 Aligned_cols=124 Identities=18% Similarity=0.253 Sum_probs=76.7
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC------CCC-------------------
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------SFD------------------- 67 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~------~~~------------------- 67 (283)
.-.++|||+||.|.-+|...++++ .+...||.. .+.. -.|
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlG--------------lkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~ 104 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLG--------------LKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDF 104 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhc--------------ceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHH
Confidence 357999999999999999999887 777777764 3210 000
Q ss_pred -------------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEc--CC--cEEEeeEEEEcCCCC
Q 023375 68 -------------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG--TEVPYGLLVWSTGVG 118 (283)
Q Consensus 68 -------------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g--~~i~~d~vi~a~G~~ 118 (283)
.++..-++..|++.+|.++.+.-+=++++.|... || ..+.+..+|+|||..
T Consensus 105 ~~rGi~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe 184 (506)
T KOG1335|consen 105 ASRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE 184 (506)
T ss_pred HhcCccccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc
Confidence 1122223344556666666653222345555553 44 478999999999985
Q ss_pred CchhhhccCCCCCCCCccccCCCcccCCCCC-EEEec
Q 023375 119 PSTLVKSLDLPKSPGGRIGIDEWLRVPSVQD-VFAVG 154 (283)
Q Consensus 119 ~~~~~~~~~l~~~~~g~i~Vd~~l~~~~~~~-VfaiG 154 (283)
-.++. |++.|++--+.-+..|.....|. +-++|
T Consensus 185 V~~~P---GI~IDekkIVSStgALsL~~vPk~~~viG 218 (506)
T KOG1335|consen 185 VTPFP---GITIDEKKIVSSTGALSLKEVPKKLTVIG 218 (506)
T ss_pred cCCCC---CeEecCceEEecCCccchhhCcceEEEEc
Confidence 54443 66666655455555566555554 44444
No 266
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.06 E-value=0.00069 Score=61.12 Aligned_cols=103 Identities=24% Similarity=0.390 Sum_probs=67.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHH------------------
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA------------------ 74 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~------------------ 74 (283)
+.-..+|||||..+...+..+.... ...+|.+|....-+|.+.+.+++.+
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~d------------a~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqws 244 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSND------------ATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWS 244 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCC------------CCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccC
Confidence 3456899999988876666554332 2367777755433433322222211
Q ss_pred -------------------HHHHHhCCCEEEeC-ceEEEeC--CeEEEcCCcEEEeeEEEEcCCCCCch--hhhccC
Q 023375 75 -------------------TTQLSKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPST--LVKSLD 127 (283)
Q Consensus 75 -------------------~~~l~~~gV~v~~~-~V~~v~~--~~v~~~~g~~i~~d~vi~a~G~~~~~--~~~~~~ 127 (283)
......-||-+..+ +|..|+. +.|++.||.+|.||.+++|||.+|.. .+++.+
T Consensus 245 GkeRsiffepd~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~ 321 (659)
T KOG1346|consen 245 GKERSIFFEPDGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEAS 321 (659)
T ss_pred CccceeEecCCcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcC
Confidence 01112457999999 7888865 47999999999999999999999973 444443
No 267
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.05 E-value=0.002 Score=55.19 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=29.0
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||+|+.|+.+|..|+..+ .+|+++|++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG--------------~~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAG--------------REVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcC--------------cEEEEEEcC
Confidence 6999999999999999999887 899999986
No 268
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.94 E-value=0.031 Score=51.86 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=33.5
Q ss_pred CccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHH----HHHHHHHHHHHHHHH
Q 023375 134 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV----AERQGKYLFSLLNRI 189 (283)
Q Consensus 134 g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~----A~~qg~~~a~~i~~~ 189 (283)
|.|.||...|| +.+++||+|.|+.. |=...-.+|.. +.--|..+|++|...
T Consensus 342 GGI~vD~~GrT-si~gLYAiGEvA~T----GlHGANRLASNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 342 GGIAVDANGRT-SIPGLYAIGEVACT----GLHGANRLASNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred ccEEECCCCcc-cCcccEEeeeeccc----ccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 67889999998 99999999999963 21222334444 444455555555543
No 269
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.82 E-value=0.0027 Score=59.04 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=58.3
Q ss_pred HcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC----CCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 023375 11 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----NEILSSFDDRLRHYATTQLSKSGVRLV 86 (283)
Q Consensus 11 ~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~----~~~l~~~~~~~~~~~~~~l~~~gV~v~ 86 (283)
.-+.++|+|||.|.+|+++|.+++... .+|.+... ....+.. .-.++..+
T Consensus 183 ~f~~k~VlVIG~g~SG~DIs~d~~~~a--------------k~v~~~~~~~~~~~~~~~~------------~~~~~~~~ 236 (448)
T KOG1399|consen 183 KFRDKVVLVVGCGNSGMDISLDLLRVA--------------KEVHLSVVSPKVHVEPPEI------------LGENLWQV 236 (448)
T ss_pred cccCceEEEECCCccHHHHHHHHHHhc--------------cCcceeeecccccccccce------------eecceEEc
Confidence 346689999999999999999998776 45555432 1111100 00122223
Q ss_pred eCceEEEeCCe-EEEcCCcEEEeeEEEEcCCCCCc-hhhhccC
Q 023375 87 RGIVKDVDSQK-LILNDGTEVPYGLLVWSTGVGPS-TLVKSLD 127 (283)
Q Consensus 87 ~~~V~~v~~~~-v~~~~g~~i~~d~vi~a~G~~~~-~~~~~~~ 127 (283)
.. |..+++++ +.+.++....+|.+|+|||..-. ++++..+
T Consensus 237 ~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 237 PS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred cc-cccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 33 66677776 44456678899999999999865 5555443
No 270
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.72 E-value=0.025 Score=51.39 Aligned_cols=100 Identities=20% Similarity=0.390 Sum_probs=67.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC------------------CCCC-------
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI------------------LSSF------- 66 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~------------------l~~~------- 66 (283)
..-.|+||||||+|+.+|..|.++..+. ..+.+|.++|.. .+ +|..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~--------~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl 146 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKA--------NKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPL 146 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhc--------CCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcc
Confidence 4468999999999999999998776321 123677777653 22 1110
Q ss_pred -----------------------C------------HHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC----eEEE----
Q 023375 67 -----------------------D------------DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ----KLIL---- 100 (283)
Q Consensus 67 -----------------------~------------~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~----~v~~---- 100 (283)
. ..+..++-+..++.||+++.+ ..++|- ++ +|.+
T Consensus 147 ~t~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~G 226 (621)
T KOG2415|consen 147 NTPVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVG 226 (621)
T ss_pred cccccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccc
Confidence 0 145566677778999999988 666652 22 2333
Q ss_pred -----------cCCcEEEeeEEEEcCCCCCc
Q 023375 101 -----------NDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 101 -----------~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.|-++.+...|+|-|.+.+
T Consensus 227 I~k~G~pKd~FerGme~hak~TifAEGc~G~ 257 (621)
T KOG2415|consen 227 ISKDGAPKDTFERGMEFHAKVTIFAEGCHGS 257 (621)
T ss_pred ccCCCCccccccccceecceeEEEeccccch
Confidence 22447889999999998876
No 271
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.69 E-value=0.002 Score=60.88 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=33.0
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI 62 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~ 62 (283)
.+.++|+|||||.+|+.+|..|.+.+ .+|+++|+. ++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G--------------~~V~VLEARdRv 50 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFG--------------FDVLVLEARDRV 50 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcC--------------CceEEEeccCCc
Confidence 45679999999999999999999998 899999985 54
No 272
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.66 E-value=0.002 Score=59.35 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=28.8
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 59 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~ 59 (283)
++|+|||||++|+|+|..|++.+ .+|+|+|+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~G--------------l~V~LiE~ 33 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRG--------------VPVELYEM 33 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CcEEEEEc
Confidence 58999999999999999999987 89999985
No 273
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.63 E-value=0.0096 Score=55.62 Aligned_cols=78 Identities=28% Similarity=0.333 Sum_probs=52.1
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 92 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~ 92 (283)
+.++++|+|+|.+|..+|..|++.+ .+|++++...- +.+ ....+.|.+.|++++.+.+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--------------~~V~~~d~~~~-----~~~-~~~~~~l~~~~~~~~~~~~~~ 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--------------AKVILTDEKEE-----DQL-KEALEELGELGIELVLGEYPE 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCch-----HHH-HHHHHHHHhcCCEEEeCCcch
Confidence 4579999999999999999999988 99999987531 122 222344677788887653211
Q ss_pred EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 93 VDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
...-.+|.||.++|..++
T Consensus 64 ----------~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 64 ----------EFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred ----------hHhhcCCEEEECCCCCCC
Confidence 001135666666666554
No 274
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.58 E-value=0.028 Score=52.35 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C----eEEEc--CCc--EEEeeEEEEcCCCCCc
Q 023375 69 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q----KLILN--DGT--EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 69 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~----~v~~~--~g~--~i~~d~vi~a~G~~~~ 120 (283)
.+...+.+.+++.||+++.+ +|+++.. + +|++. +++ .+.++.||+|+|....
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 45566677778889999998 7888753 2 24443 343 4789999999996443
No 275
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.57 E-value=0.024 Score=50.41 Aligned_cols=111 Identities=26% Similarity=0.358 Sum_probs=71.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC---------------------------
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS--------------------------- 64 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~--------------------------- 64 (283)
+.-..+|||||.-|+..|...+.++ .++.++|.. .+..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~G--------------Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~ 84 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHG--------------AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAK 84 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcC--------------ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhh
Confidence 3567899999999999999999888 777777765 4310
Q ss_pred ----------CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCC--eEEEcCCcE--EEeeEEEEcCCCC
Q 023375 65 ----------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQ--KLILNDGTE--VPYGLLVWSTGVG 118 (283)
Q Consensus 65 ----------~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~--~v~~~~g~~--i~~d~vi~a~G~~ 118 (283)
.++ ..+....++.|.+.+|+++.++-.=+.+. .|...||++ +.+..+++|+|.+
T Consensus 85 ~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~ 164 (478)
T KOG0405|consen 85 DYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGR 164 (478)
T ss_pred hcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCc
Confidence 000 01222334456677889988854445555 455567743 6789999999999
Q ss_pred Cc-hhhhccCCCCCCCCccc
Q 023375 119 PS-TLVKSLDLPKSPGGRIG 137 (283)
Q Consensus 119 ~~-~~~~~~~l~~~~~g~i~ 137 (283)
|. |-+....+..+.+|++.
T Consensus 165 p~~PnIpG~E~gidSDgff~ 184 (478)
T KOG0405|consen 165 PIIPNIPGAELGIDSDGFFD 184 (478)
T ss_pred cCCCCCCchhhccccccccc
Confidence 87 43332233334444443
No 276
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.56 E-value=0.026 Score=54.38 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=25.6
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.|+|||||.+|+-+|.++++.+ .+|+|+++.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G--------------~~V~lleK~ 31 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAG--------------LNTAVISKV 31 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence 4899999999999999998876 667776653
No 277
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.53 E-value=0.033 Score=54.19 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=27.2
Q ss_pred cCeEEEEccCcHHHHHHHHHHHh--hhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~--~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.-.|+|||||.+|+-+|.++++. + .+|+||++.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G--------------~~V~lieK~ 45 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPD--------------LKVLIVEKA 45 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCC--------------CeEEEEECC
Confidence 35799999999999999999886 5 677777653
No 278
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.49 E-value=0.031 Score=54.05 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCEEEeC-ceEEEe--CCe---EE---EcCCc--EEEeeEEEEcCCCCCc
Q 023375 73 YATTQLSKSGVRLVRG-IVKDVD--SQK---LI---LNDGT--EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 73 ~~~~~l~~~gV~v~~~-~V~~v~--~~~---v~---~~~g~--~i~~d~vi~a~G~~~~ 120 (283)
.+.+.+++.||+++.+ .++++. .+. +. ..+++ .+.++.||+|||....
T Consensus 140 ~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 140 ELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred HHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 3444455668888888 677753 232 22 23554 5889999999998653
No 279
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.48 E-value=0.031 Score=53.56 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.3
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhh
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFI 37 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~ 37 (283)
.-.|+|||+|.+|+-+|.++++.+
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G 39 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAG 39 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcC
Confidence 358999999999999999998765
No 280
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.43 E-value=0.014 Score=50.47 Aligned_cols=41 Identities=32% Similarity=0.432 Sum_probs=32.1
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCC-CCccEEEEEeCCCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV-KDYIHVTLIEANEI 62 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~-~~~~~V~li~~~~~ 62 (283)
..++|+|||||.+|+-.|..|++.. .. +....|+|||...+
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~---------sf~~~~~~ItifEs~~I 50 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHP---------SFKKGELDITIFESKEI 50 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCC---------ccCCCceeEEEEeeccc
Confidence 4489999999999999999998753 22 24588999987543
No 281
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.43 E-value=0.039 Score=52.23 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--Ce---EEEcC-C--cEEEeeEEEEcCCCCCc
Q 023375 69 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--QK---LILND-G--TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 69 ~~~~~~~~~l~~-~gV~v~~~-~V~~v~~--~~---v~~~~-g--~~i~~d~vi~a~G~~~~ 120 (283)
.+...+.+.+++ .||+++.+ .++++.. +. +...+ + ..+.++.||+|+|....
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 344445555555 58999988 7887743 22 33332 3 36889999999998654
No 282
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.37 E-value=0.014 Score=48.72 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=49.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 92 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~ 92 (283)
+.++|+|||||.+|..-+..|.+.+ .+|+++.+. +.+++. +..++.+|+++.+...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--------------a~VtVvsp~-----~~~~l~----~l~~~~~i~~~~~~~~- 63 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--------------AQLRVIAEE-----LESELT----LLAEQGGITWLARCFD- 63 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--------------CEEEEEcCC-----CCHHHH----HHHHcCCEEEEeCCCC-
Confidence 3579999999999999999999887 899999753 223332 2233345666544211
Q ss_pred EeCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375 93 VDSQKLILNDGTEVPYGLLVWSTGVG 118 (283)
Q Consensus 93 v~~~~v~~~~g~~i~~d~vi~a~G~~ 118 (283)
. +.--.++.||.|||..
T Consensus 64 --~-------~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 64 --A-------DILEGAFLVIAATDDE 80 (205)
T ss_pred --H-------HHhCCcEEEEECCCCH
Confidence 0 1112389999999986
No 283
>PRK08275 putative oxidoreductase; Provisional
Probab=96.36 E-value=0.051 Score=52.29 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeC--C----eEEE---cCCc--EEEeeEEEEcCCCCCc
Q 023375 72 HYATTQLSKSGVRLVRG-IVKDVDS--Q----KLIL---NDGT--EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 72 ~~~~~~l~~~gV~v~~~-~V~~v~~--~----~v~~---~~g~--~i~~d~vi~a~G~~~~ 120 (283)
+.+.+.+++.||+++.+ .++++.. + ++.. .+|+ .+.++.||+|||....
T Consensus 141 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 141 KVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 44445556678999888 7877732 2 2322 3554 4789999999998653
No 284
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.33 E-value=0.044 Score=51.07 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--C---eEE-EcCCc--EEEeeEEEEcCCCCC
Q 023375 69 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--Q---KLI-LNDGT--EVPYGLLVWSTGVGP 119 (283)
Q Consensus 69 ~~~~~~~~~l~~-~gV~v~~~-~V~~v~~--~---~v~-~~~g~--~i~~d~vi~a~G~~~ 119 (283)
.+.+.+.+.+++ .||+++.+ +++++.. + ++. ..+++ ++.++.||+|||...
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 344455555554 58999999 7888642 3 222 33454 588999999999744
No 285
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.016 Score=52.05 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=59.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC-C--------CCCCC--HHHHHHHHHHHHhCCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I--------LSSFD--DRLRHYATTQLSKSGV 83 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~-~--------l~~~~--~~~~~~~~~~l~~~gV 83 (283)
.+|.|||+||+|+-.|..|.+.. +..+|+++|... . .|..+ +...+.+.+.++....
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~------------~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rf 88 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRH------------PNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERF 88 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcC------------CCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccce
Confidence 49999999999999999997642 228999999862 2 23322 2344555666677777
Q ss_pred EEEeC-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 84 RLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 84 ~v~~~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+..| .| +..+.+.+ -+-.||.|++|.|....
T Consensus 89 sf~gNv~v----G~dvsl~e-L~~~ydavvLaYGa~~d 121 (468)
T KOG1800|consen 89 SFFGNVKV----GRDVSLKE-LTDNYDAVVLAYGADGD 121 (468)
T ss_pred EEEeccee----cccccHHH-HhhcccEEEEEecCCCC
Confidence 77776 55 11222221 12349999999998776
No 286
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.32 E-value=0.018 Score=52.87 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcEEEeeEEEEcCCCCCchhhhc
Q 023375 67 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKS 125 (283)
Q Consensus 67 ~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~d~vi~a~G~~~~~~~~~ 125 (283)
-+++.+.+.+.|++.|++++.+ +|.+++- + .|.+++|+++++|.||+|+|....+++..
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~ 236 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEM 236 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHH
Confidence 3567788889999999999999 8987753 2 57788999999999999999998875543
No 287
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.31 E-value=0.024 Score=51.34 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=29.2
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..+|+|||||..|+..|..|++.+ .+|.++|..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G--------------~~v~VlE~~ 34 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKG--------------IDVVVLESR 34 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcC--------------CeEEEEeec
Confidence 358999999999999999999987 888888875
No 288
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.30 E-value=0.037 Score=51.20 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=42.1
Q ss_pred HHHHHHhC-CCEEEeC-ceEEEeCC-----eEEEc-----CCcEEEeeEEEEcCCCCCchhhhccCCC
Q 023375 74 ATTQLSKS-GVRLVRG-IVKDVDSQ-----KLILN-----DGTEVPYGLLVWSTGVGPSTLVKSLDLP 129 (283)
Q Consensus 74 ~~~~l~~~-gV~v~~~-~V~~v~~~-----~v~~~-----~g~~i~~d~vi~a~G~~~~~~~~~~~l~ 129 (283)
+.+.+.+. |++++++ +|++++.. .|.+. +..++.++.|++.+|..+-+++..++++
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence 33444455 9999999 89998754 35442 2357999999999999888899988875
No 289
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.28 E-value=0.014 Score=54.14 Aligned_cols=70 Identities=20% Similarity=0.418 Sum_probs=47.1
Q ss_pred ccEEEEEeCCC-C--CC----CC-----C--HHHHHH-HHHHHHhCCCEEEeC-ceEEEeCC--eEEEcC---CcEEE--
Q 023375 51 YIHVTLIEANE-I--LS----SF-----D--DRLRHY-ATTQLSKSGVRLVRG-IVKDVDSQ--KLILND---GTEVP-- 107 (283)
Q Consensus 51 ~~~V~li~~~~-~--l~----~~-----~--~~~~~~-~~~~l~~~gV~v~~~-~V~~v~~~--~v~~~~---g~~i~-- 107 (283)
+.+|+||++.. + .| .+ . .....+ ..+.+.+.||+++.+ +|++++.+ .+.+.+ ++++.
T Consensus 12 ~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~ 91 (427)
T TIGR03385 12 ESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEES 91 (427)
T ss_pred CCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecC
Confidence 38999999863 2 12 11 1 111222 233458889999877 89999743 566643 45677
Q ss_pred eeEEEEcCCCCCc
Q 023375 108 YGLLVWSTGVGPS 120 (283)
Q Consensus 108 ~d~vi~a~G~~~~ 120 (283)
||.||+|||.+|+
T Consensus 92 yd~lIiATG~~p~ 104 (427)
T TIGR03385 92 YDYLILSPGASPI 104 (427)
T ss_pred CCEEEECCCCCCC
Confidence 9999999999887
No 290
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.25 E-value=0.0048 Score=57.36 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=29.0
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++|+|||||.+|+-+|..|++.+. +.+|+|+|+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~------------~~~V~vlEa~ 34 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGP------------DADITLLEAS 34 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCC------------CCCEEEEEcC
Confidence 479999999999999999998642 1689999986
No 291
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.23 E-value=0.0059 Score=54.82 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
....|+|||+|.+|..+|..|++.+ .+|++||+.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdG--------------RrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDG--------------RRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCC--------------cEEEEEecc
Confidence 4457999999999999999999877 899999996
No 292
>PTZ00367 squalene epoxidase; Provisional
Probab=96.21 E-value=0.0077 Score=57.92 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=30.6
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~ 61 (283)
..+|+|||||++|+.+|..|++.+ .+|+++|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G--------------~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQG--------------RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcC--------------CEEEEEcccc
Confidence 458999999999999999999877 8999999863
No 293
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.18 E-value=0.0045 Score=53.60 Aligned_cols=40 Identities=25% Similarity=0.164 Sum_probs=34.0
Q ss_pred HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..++-+..+|+|||.|-.|.++|..|++.+- .+++|++..
T Consensus 24 ~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-------------g~itLiD~D 63 (268)
T PRK15116 24 ALQLFADAHICVVGIGGVGSWAAEALARTGI-------------GAITLIDMD 63 (268)
T ss_pred HHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-------------CEEEEEeCC
Confidence 3455677899999999999999999998873 689999876
No 294
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.0067 Score=56.42 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=31.4
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~ 62 (283)
+||+|+|||.+|+.+|.+|++.+ .+|||+|++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g--------------~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG--------------YDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC--------------CceEEEeccCc
Confidence 58999999999999999999998 99999999743
No 295
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.03 E-value=0.014 Score=55.36 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=31.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 63 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l 63 (283)
..|+|||||.+|+-+|.+|+.++ .+|.|+|+..+.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG--------------~~V~LlEk~d~~ 41 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRG--------------LKVLLCEKDDLA 41 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCCCC
Confidence 47999999999999999999887 899999997543
No 296
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.00 E-value=0.0084 Score=55.23 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=28.7
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||||.+|+.+|.+|++.+ .+|+|+|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g--------------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAG--------------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence 7999999999999999999876 899999986
No 297
>PLN02268 probable polyamine oxidase
Probab=95.99 E-value=0.0088 Score=55.56 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=28.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+|+|||||.+|+.+|..|.+.+ .+|+|+|+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g--------------~~v~vlEa~ 32 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDAS--------------FKVTLLESR 32 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence 37999999999999999998866 788888874
No 298
>PRK07233 hypothetical protein; Provisional
Probab=95.98 E-value=0.0077 Score=55.62 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=28.5
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||||.+|+.+|..|++.+ .+|+|+|+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G--------------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG--------------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEeC
Confidence 6899999999999999999877 889999886
No 299
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.97 E-value=0.0098 Score=54.08 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=30.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~ 61 (283)
...+|+|||||.+|+.+|.+|++.+ .+|+++|+..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G--------------~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERG--------------ADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC--------------CEEEEEecCc
Confidence 3468999999999999999999987 7999998753
No 300
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.94 E-value=0.028 Score=44.02 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=50.6
Q ss_pred EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCc-eEEEeC
Q 023375 17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS 95 (283)
Q Consensus 17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~-V~~v~~ 95 (283)
|+|+|+|..|.-+|..|++.+ .+|+++.+.. ..+.+++.|+.+.... -..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--------------~~V~l~~r~~------------~~~~~~~~g~~~~~~~~~~~~~~ 54 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--------------HDVTLVSRSP------------RLEAIKEQGLTITGPDGDETVQP 54 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--------------CEEEEEESHH------------HHHHHHHHCEEEEETTEEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCC--------------CceEEEEccc------------cHHhhhheeEEEEecccceeccc
Confidence 689999999999999999866 8999996521 1234778898887664 111111
Q ss_pred CeEEEcCC--cEEEeeEEEEcCCCCCc
Q 023375 96 QKLILNDG--TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 96 ~~v~~~~g--~~i~~d~vi~a~G~~~~ 120 (283)
. ....+. ..-++|.||+|+-....
T Consensus 55 ~-~~~~~~~~~~~~~D~viv~vKa~~~ 80 (151)
T PF02558_consen 55 P-IVISAPSADAGPYDLVIVAVKAYQL 80 (151)
T ss_dssp E-EEESSHGHHHSTESEEEE-SSGGGH
T ss_pred c-cccCcchhccCCCcEEEEEecccch
Confidence 1 112111 23569999999765443
No 301
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.90 E-value=0.0089 Score=55.45 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=31.3
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI 62 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~ 62 (283)
++|+|||||.+|+.+|.+|++.++ ..+|+|+|++ ++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p------------~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGP------------DVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCC------------CCcEEEEecCCCC
Confidence 479999999999999999998764 3899999996 44
No 302
>PRK07208 hypothetical protein; Provisional
Probab=95.89 E-value=0.0096 Score=56.03 Aligned_cols=33 Identities=33% Similarity=0.460 Sum_probs=29.2
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.++|+|||||.+|+.+|..|++.+ .+|+++|+.
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g--------------~~v~v~E~~ 36 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRG--------------YPVTVLEAD 36 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence 468999999999999999999876 788888875
No 303
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=95.88 E-value=0.13 Score=45.82 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=29.9
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.-.|+|||||-+|...|.-|.++..+ .+.+|.++|++
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd----------~gl~VvVVErd 122 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARD----------EGLNVVVVERD 122 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhc----------CCceEEEEecc
Confidence 45799999999999999999987632 34788888775
No 304
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.37 Score=44.81 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=34.4
Q ss_pred CCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 5 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 5 ~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.......+..-+|+|+|+|.+-++....|.+.+.+ .+||++.+.
T Consensus 187 ~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~------------g~It~iSRr 230 (474)
T COG4529 187 ANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHK------------GPITAISRR 230 (474)
T ss_pred CcccccccCCCceEEecCCchhHHHHHHHhccCCc------------cceEEEecc
Confidence 34444556666799999999999999999986643 788888774
No 305
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=95.79 E-value=0.011 Score=55.26 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=28.8
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++|+|||||.+|+.+|..|++..+ +.+.+|+|+|+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~----------~~g~~v~vlE~~ 38 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIP----------ELPVELTLVEAS 38 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC----------CCCCcEEEEEcC
Confidence 689999999999999999998620 001789999876
No 306
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.78 E-value=0.011 Score=56.19 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=30.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~ 62 (283)
..|+|||||.+|+.+|.+|+.++ .+|+|||++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG--------------l~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRG--------------LSVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCC
Confidence 57999999999999999999987 89999998643
No 307
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.17 Score=44.93 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=28.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 59 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~ 59 (283)
-.-..+|||||..|+.+|.+.+.++ ++|.+++-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G--------------~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLG--------------AKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcC--------------CcEEEEee
Confidence 3457899999999999999999998 77777764
No 308
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=95.70 E-value=0.013 Score=54.82 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=30.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI 62 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~ 62 (283)
++|+|||||.+|+.+|..|++.++.. +.+.+|+|+|+. ++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~--------~~~~~V~vlEa~~r~ 42 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDY--------NIDLNLILVEKEEYL 42 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhcc--------CCCccEEEEecCCCc
Confidence 57999999999999999998753100 012689999986 44
No 309
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.66 E-value=0.013 Score=55.33 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=31.0
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~ 61 (283)
..+|||||||..|+-+|..|++.+ .+|+++|++.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G--------------~~V~VlE~~~ 36 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAG--------------LKVTVLEKND 36 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCC--------------CEEEEEEecC
Confidence 468999999999999999999988 9999999763
No 310
>PLN02487 zeta-carotene desaturase
Probab=95.65 E-value=0.014 Score=56.21 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+.++|+|||||++|+.+|..|++.+ .+|+|+|+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g--------------~~v~i~E~~ 107 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQG--------------HEVDIYESR 107 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--------------CeeEEEecC
Confidence 4469999999999999999999877 899999986
No 311
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.61 E-value=0.019 Score=56.04 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=31.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~ 62 (283)
..|+|||||.+|+.+|.+|+..+ .+|+|||++++
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rG--------------l~V~LvE~~d~ 105 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRG--------------LRVGLVEREDF 105 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC--------------CEEEEEecccc
Confidence 57999999999999999999987 89999999754
No 312
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=95.50 E-value=0.08 Score=46.60 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=40.2
Q ss_pred HHHHhCCCEEEeC-ceEEEeCC-------eEEEc--CCcEEEeeEEEEcCCCCCchhhhccCCCCCC
Q 023375 76 TQLSKSGVRLVRG-IVKDVDSQ-------KLILN--DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSP 132 (283)
Q Consensus 76 ~~l~~~gV~v~~~-~V~~v~~~-------~v~~~--~g~~i~~d~vi~a~G~~~~~~~~~~~l~~~~ 132 (283)
+.++..|-++.++ +++.+..+ .++.. .++++.+..++-|+|....-..+.++++.++
T Consensus 204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dP 270 (453)
T KOG2665|consen 204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDP 270 (453)
T ss_pred HHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCCC
Confidence 3366677777777 77776543 13332 3678999999999999887666667777665
No 313
>PLN02576 protoporphyrinogen oxidase
Probab=95.50 E-value=0.016 Score=54.83 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=28.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHh-hhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~-~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+|+|||||.+|+.+|..|++. + .+|+|+|+.
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g--------------~~v~vlEa~ 45 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHG--------------VNVLVTEAR 45 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcC--------------CCEEEEecC
Confidence 4799999999999999999987 5 788888876
No 314
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.49 E-value=0.059 Score=48.54 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=52.9
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC-------CCCC--------------------
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LSSF-------------------- 66 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~-------l~~~-------------------- 66 (283)
..++.||.||.++.+|..|.+... .++..+|+. .+ ++..
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~-------------~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~ 69 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGD-------------LKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPF 69 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH----------------EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTT
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCC-------------CCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcc
Confidence 468999999999999999998762 778888854 22 1100
Q ss_pred ------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--------eEEEc----CCcEEEee
Q 023375 67 ------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--------KLILN----DGTEVPYG 109 (283)
Q Consensus 67 ------------------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--------~v~~~----~g~~i~~d 109 (283)
-.+..+|+.-..++.+-.+..+ +|++|+.. .|.+. +++++.++
T Consensus 70 sflnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar 149 (341)
T PF13434_consen 70 SFLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR 149 (341)
T ss_dssp SHHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES
T ss_pred cHHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC
Confidence 0123344433344555447777 78888542 34442 34689999
Q ss_pred EEEEcCCCCCc
Q 023375 110 LLVWSTGVGPS 120 (283)
Q Consensus 110 ~vi~a~G~~~~ 120 (283)
.||+++|..|.
T Consensus 150 ~vVla~G~~P~ 160 (341)
T PF13434_consen 150 NVVLATGGQPR 160 (341)
T ss_dssp EEEE----EE-
T ss_pred eEEECcCCCCC
Confidence 99999998776
No 315
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.38 E-value=0.2 Score=48.58 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEe--C----Ce---EEE---cCCc--EEEeeEEEEcCCCCCc
Q 023375 70 LRHYATTQLSKSGVRLVRG-IVKDVD--S----QK---LIL---NDGT--EVPYGLLVWSTGVGPS 120 (283)
Q Consensus 70 ~~~~~~~~l~~~gV~v~~~-~V~~v~--~----~~---v~~---~~g~--~i~~d~vi~a~G~~~~ 120 (283)
+...+.+.+++.||+++.+ .++++. + +. +.. .+++ .+.++.||+|||....
T Consensus 142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 3444555566778999888 777763 2 22 322 3454 5789999999998764
No 316
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.22 E-value=0.022 Score=53.80 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.7
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++|+|||||..|+.+|..|++.+ .+|+++|+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G--------------~~v~vlE~~ 33 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRG--------------YRVTLLEQH 33 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecC
Confidence 57999999999999999999887 899999987
No 317
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.22 E-value=0.059 Score=50.46 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=52.2
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD 94 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~ 94 (283)
+|+|||.|.+|+.+|..|.+.+ .+|++++..... . .....+.|++.|++++.+ ... .+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--------------~~V~~~D~~~~~-~-----~~~~~~~l~~~gi~~~~g~~~~-~~ 60 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--------------WEVVVSDRNDSP-E-----LLERQQELEQEGITVKLGKPLE-LE 60 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--------------CEEEEECCCCch-h-----hHHHHHHHHHcCCEEEECCccc-hh
Confidence 6999999999999999998887 899999876321 1 112234577789999876 221 10
Q ss_pred CCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 95 SQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 95 ~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+.. ..-.+|.||.++|..+.
T Consensus 61 --~~~~---~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 61 --SFQP---WLDQPDLVVVSPGIPWD 81 (459)
T ss_pred --hhhH---HhhcCCEEEECCCCCCC
Confidence 0000 01236788888888765
No 318
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.21 E-value=0.45 Score=43.04 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=49.4
Q ss_pred cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCccc---CCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHH
Q 023375 104 TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV---PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 180 (283)
Q Consensus 104 ~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~---~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~ 180 (283)
++++|++++.+.|.+..++....++. .+..+.-|...++ .-.|++|+.|=|.+-| ......++++|.
T Consensus 327 e~~p~~l~i~sIGYks~pv~~gipFd--~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP--------~GvIattm~dAf 396 (468)
T KOG1800|consen 327 ETLPCGLLIRSIGYKSVPVDSGIPFD--DKKGVVPNVNGRVLVSGCSPGLYASGWVKHGP--------TGVIATTMQDAF 396 (468)
T ss_pred EeeccceeEeeeeecccccCCCCCcc--cccCcccCCCceEEeeccCCceEEEeeeccCC--------cceeeehhhhHH
Confidence 57999999999999887665544432 2222222222222 1359999999887621 233445667777
Q ss_pred HHHHHHHHHhh
Q 023375 181 YLFSLLNRIGK 191 (283)
Q Consensus 181 ~~a~~i~~~~~ 191 (283)
.+|+.|...++
T Consensus 397 ~v~d~I~qD~~ 407 (468)
T KOG1800|consen 397 EVADTIVQDLK 407 (468)
T ss_pred HHHHHHHHHHH
Confidence 77777777665
No 319
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.20 E-value=0.15 Score=47.37 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeC----Ce---EEEc-CCcEEEeeEEEEcCCCCC
Q 023375 70 LRHYATTQLSKSGVRLVRG-IVKDVDS----QK---LILN-DGTEVPYGLLVWSTGVGP 119 (283)
Q Consensus 70 ~~~~~~~~l~~~gV~v~~~-~V~~v~~----~~---v~~~-~g~~i~~d~vi~a~G~~~ 119 (283)
+.+.+.+.+++.|++++++ +|+++.. +. |... ++.++.++.||+|+|...
T Consensus 125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 3445555667789999988 7888642 22 2333 335789999999999543
No 320
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=95.18 E-value=0.033 Score=51.40 Aligned_cols=43 Identities=26% Similarity=0.337 Sum_probs=34.4
Q ss_pred CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375 7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI 62 (283)
Q Consensus 7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~ 62 (283)
+-.+.++..+|||||+|.+|+.+|..|.+.+- .+++|+|+. ++
T Consensus 14 ~~~~~~~~~kIvIIGAG~AGLaAA~rLle~gf-------------~~~~IlEa~dRI 57 (498)
T KOG0685|consen 14 SGLKARGNAKIVIIGAGIAGLAAATRLLENGF-------------IDVLILEASDRI 57 (498)
T ss_pred hhhhccCCceEEEECCchHHHHHHHHHHHhCC-------------ceEEEEEecccc
Confidence 34455666799999999999999999996652 788888876 55
No 321
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=95.18 E-value=0.02 Score=54.25 Aligned_cols=30 Identities=33% Similarity=0.468 Sum_probs=27.7
Q ss_pred EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
|+|||||..|+.+|..|++.+ .+|+|+|++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G--------------~~V~VlE~~ 30 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG--------------IPVTVVEQR 30 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC--------------CcEEEEECC
Confidence 689999999999999999887 899999986
No 322
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.17 E-value=0.021 Score=53.37 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=28.1
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||||++|+.+|.+|.+.+ .+|+|+|+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G--------------~~v~vlE~~ 31 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAG--------------HTPIVLEAR 31 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence 5899999999999999999877 889999875
No 323
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=95.16 E-value=0.027 Score=51.35 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=31.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI 62 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~ 62 (283)
-.++|+|||||.+|+.+|..|+++.. +..|+|+|+. ++
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p------------~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGP------------DVTITLFEASPRV 48 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCC------------CceEEEEecCCcc
Confidence 34799999999999999999998763 3788899886 54
No 324
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.11 E-value=0.089 Score=46.62 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=29.3
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..+|+|+|+|..|.-+|+.|++.+ .+|+++.++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G--------------~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG--------------LPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEec
Confidence 358999999999999999999876 899999774
No 325
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.06 E-value=0.026 Score=41.44 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=29.7
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~ 61 (283)
+.++|+|||||..|..-+..|.+.+ .+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g--------------A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG--------------AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT--------------BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEECCch
Confidence 4579999999999999999998877 9999997643
No 326
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.05 E-value=0.03 Score=51.10 Aligned_cols=32 Identities=22% Similarity=0.492 Sum_probs=28.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+++|||||++|+.+|..|++.+ .+|+++|+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G--------------~~V~viEk~ 33 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLN--------------KRVLVVEKR 33 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecC
Confidence 36999999999999999999765 899999986
No 327
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.03 E-value=0.056 Score=47.77 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=29.4
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..|-|||||.+|.|+|..+++.+ ++|.|.|..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~G--------------v~V~L~EMR 35 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRG--------------VPVILYEMR 35 (439)
T ss_pred CceEEEcccccccHHHHHHHHcC--------------CcEEEEEcc
Confidence 57899999999999999999988 999999864
No 328
>PLN02529 lysine-specific histone demethylase 1
Probab=95.00 E-value=0.032 Score=55.16 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=30.0
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+.++|+|||||++|+.+|..|+..+ .+|+++|+.
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g--------------~~v~v~E~~ 192 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFG--------------FKVVVLEGR 192 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcC--------------CcEEEEecC
Confidence 34578999999999999999999877 778888774
No 329
>PRK07121 hypothetical protein; Validated
Probab=95.00 E-value=0.029 Score=53.12 Aligned_cols=34 Identities=26% Similarity=0.186 Sum_probs=30.1
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..-.|||||+|.+|+-+|.++++.+ .+|+|+|+.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G--------------~~VillEK~ 52 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAG--------------ARVLVLERA 52 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence 3468999999999999999999877 899999875
No 330
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.99 E-value=0.042 Score=52.88 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=63.3
Q ss_pred cCeEEEEccCcHHHHHHHH-------HHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEE
Q 023375 14 LLHCVVVGGGPTGVEFSGE-------LSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRL 85 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~-------L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v 85 (283)
++..+++|+|..++|.+.. +.+++ .+|++++.. ..+..++..+...+.+.+++.||++
T Consensus 160 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v 225 (557)
T PRK07843 160 PLNMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPV 225 (557)
T ss_pred cccccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEE
Confidence 3457899999999998864 34444 455555443 4445567788888889999999999
Q ss_pred EeC-ceEEEeCC-----eEEEc-CCc--EEEee-EEEEcCCCCC
Q 023375 86 VRG-IVKDVDSQ-----KLILN-DGT--EVPYG-LLVWSTGVGP 119 (283)
Q Consensus 86 ~~~-~V~~v~~~-----~v~~~-~g~--~i~~d-~vi~a~G~~~ 119 (283)
+++ +++++..+ +|+.. +++ .+.++ .||+|+|...
T Consensus 226 ~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 226 LLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred EeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 999 78887543 34343 443 47785 6888776543
No 331
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=94.91 E-value=0.022 Score=50.59 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=30.1
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI 62 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~ 62 (283)
..+|+|||+|.+|+.+|..|+.. .+|||+|++ ++
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r---------------hdVTLfEA~~rl 42 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR---------------HDVTLFEADRRL 42 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc---------------cceEEEeccccc
Confidence 46899999999999999999875 799999997 44
No 332
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.75 E-value=0.028 Score=45.81 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=27.1
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|.|||+|..|..+|..++..+ .+|++++.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--------------~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--------------YEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--------------SEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--------------CcEEEEECC
Confidence 6899999999999999999987 999999886
No 333
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.75 E-value=0.031 Score=48.93 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=27.4
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~ 62 (283)
.++|||+|+.|.-+|..|++.+ ..+|.|+|++..
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~-------------~~~VlvlEaG~~ 35 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAG-------------NKKVLVLEAGPR 35 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTST-------------TS-EEEEESSBS
T ss_pred CEEEECcCHHHHHHHHHHhhCC-------------CCcEEEEEcccc
Confidence 4899999999999999999764 179999999843
No 334
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.74 E-value=0.05 Score=43.28 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=28.7
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEe
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE 58 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~ 58 (283)
+.++|+|||||..|...|..|.+.+ .+|++|.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~g--------------a~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTG--------------AFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEc
Confidence 4579999999999999999999876 8999994
No 335
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.64 E-value=0.06 Score=41.49 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=29.7
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.++|+|+|.|..|.++|..|+..+- .+++|++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-------------~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-------------GKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-------------SEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-------------CceeecCCc
Confidence 4699999999999999999999873 689999885
No 336
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=94.62 E-value=0.038 Score=52.22 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=27.4
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 59 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~ 59 (283)
.|+|||||.+|+.+|.+|++..+ +.+|+++|+
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~------------g~~V~VlEk 33 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEP------------NWSITLIER 33 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCC------------CCeEEEEEc
Confidence 58999999999999999998621 278999987
No 337
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=94.59 E-value=0.041 Score=53.15 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=62.6
Q ss_pred ccCeEEEEccCc--HHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCC--------------CCHHHHHHHH
Q 023375 13 RLLHCVVVGGGP--TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS--------------FDDRLRHYAT 75 (283)
Q Consensus 13 ~~~~vvVvGgG~--~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~--------------~~~~~~~~~~ 75 (283)
...++.|+|+|+ ++.|++..+...+ .+++++... .+++. ....+...+.
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~ 221 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATR--------------SLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLA 221 (574)
T ss_pred CcccccccceecccchHHHHHHHhhcc--------------chhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHH
Confidence 345788999988 8889888887654 334433322 22211 2345677778
Q ss_pred HHHHhCCCEEEeC-ceEEEeC--C---eEEEcC--Cc-EEEee-EEEEcCCCCCc
Q 023375 76 TQLSKSGVRLVRG-IVKDVDS--Q---KLILND--GT-EVPYG-LLVWSTGVGPS 120 (283)
Q Consensus 76 ~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~--g~-~i~~d-~vi~a~G~~~~ 120 (283)
+.+++.||+++.+ .|+++.. + +|...+ ++ ++.++ .||+|+|..++
T Consensus 222 ~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 222 KSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 8888999999999 7888753 3 344433 33 46785 79999998773
No 338
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.58 E-value=0.28 Score=44.80 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=48.9
Q ss_pred EeCC-CCCCC--CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEEcCC-cEEEeeEEEEcCCCCCc
Q 023375 57 IEAN-EILSS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILNDG-TEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 57 i~~~-~~l~~--~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~v~~~~g-~~i~~d~vi~a~G~~~~ 120 (283)
.+.+ ++.|. -..++.+.+.+.+++.||+++++ +|++|+++ .+.+.++ +++.+|.||+|+|..+.
T Consensus 72 ~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~ 142 (376)
T TIGR03862 72 VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGASW 142 (376)
T ss_pred ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCccc
Confidence 3444 77774 34578888999999999999999 89999554 3554433 46999999999998764
No 339
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.58 E-value=0.036 Score=52.50 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=28.8
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..|+|||||.+|+.+|.+|++..+ +.+|+|+|+.
T Consensus 6 ~DVvIIGgGIiG~slA~~L~~~~~------------g~~V~VlEk~ 39 (494)
T PRK05257 6 TDVVLIGGGIMSATLGTLLKELEP------------EWSITMFERL 39 (494)
T ss_pred ceEEEECcHHHHHHHHHHHHHhCC------------CCeEEEEEcC
Confidence 479999999999999999997632 2789999874
No 340
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.53 E-value=0.046 Score=50.42 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=26.7
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.|+|||+|.+|+-+|.++++.+ .+|+|||+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G--------------~~V~lvek~ 31 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG--------------AKVLLVEKG 31 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT--------------T-EEEEESS
T ss_pred CEEEECCCHHHHHHHHHHhhhc--------------CeEEEEEee
Confidence 4899999999999999999988 899999886
No 341
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=94.46 E-value=0.045 Score=51.37 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|||||+|.+|+.+|.++++.+ .+|+|||+.
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G--------------~~V~vlEk~ 36 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAG--------------ASVLLLEAA 36 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence 47999999999999999999887 888888864
No 342
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=94.46 E-value=0.04 Score=51.95 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=28.2
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||||.+|+.+|..|++.+ .+|+++|+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G--------------~~v~v~E~~ 31 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAG--------------HEVDIYESR 31 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEec
Confidence 5899999999999999999876 889999986
No 343
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.35 E-value=0.22 Score=44.24 Aligned_cols=78 Identities=10% Similarity=0.149 Sum_probs=49.0
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEe--CceEE
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR--GIVKD 92 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~--~~V~~ 92 (283)
++|+|||+|..|.-+|..|++.+ .+|+++.++. . +.+.+.|+.+.. +.. .
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g--------------~~V~~~~r~~------~-------~~~~~~g~~~~~~~~~~-~ 57 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAG--------------FDVHFLLRSD------Y-------EAVRENGLQVDSVHGDF-H 57 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEEeCC------H-------HHHHhCCeEEEeCCCCe-e
Confidence 68999999999999999999876 8999997642 1 225566776643 111 1
Q ss_pred EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 93 VDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+-.+.......-++|.||+|+-....
T Consensus 58 ~~~~~~~~~~~~~~~~D~vilavK~~~~ 85 (313)
T PRK06249 58 LPPVQAYRSAEDMPPCDWVLVGLKTTAN 85 (313)
T ss_pred ecCceEEcchhhcCCCCEEEEEecCCCh
Confidence 1111111110111258999999876543
No 344
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.33 E-value=0.077 Score=48.07 Aligned_cols=58 Identities=17% Similarity=0.334 Sum_probs=42.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC--C-------CCCCCCHHHHHHHHHHHHhCCCEE
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-------ILSSFDDRLRHYATTQLSKSGVRL 85 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~--~-------~l~~~~~~~~~~~~~~l~~~gV~v 85 (283)
++|.|||.|+.|+-.|..|++.+ ++|+.++-. + ..|-+.+.+.+.+++...+....+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G--------------HeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f 66 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG--------------HEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF 66 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC--------------CeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE
Confidence 47999999999999999999998 899999764 2 246666776666555444433433
Q ss_pred E
Q 023375 86 V 86 (283)
Q Consensus 86 ~ 86 (283)
-
T Consensus 67 T 67 (414)
T COG1004 67 T 67 (414)
T ss_pred E
Confidence 3
No 345
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.32 E-value=0.13 Score=45.72 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=51.4
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 93 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 93 (283)
.+|.|+|+|..|.-+|..|++.+ .+|+++.+.+ . .+.+++.|+.+... . ..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--------------~~V~~~~R~~-----------~-~~~l~~~GL~i~~~~~--~~ 52 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--------------HDVTLLVRSR-----------R-LEALKKKGLRIEDEGG--NF 52 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--------------CeEEEEecHH-----------H-HHHHHhCCeEEecCCC--cc
Confidence 47999999999999999999886 7888885532 1 35577778888765 3 11
Q ss_pred eCCeEEEcC-CcEEEeeEEEEcCCCCCc
Q 023375 94 DSQKLILND-GTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 94 ~~~~v~~~~-g~~i~~d~vi~a~G~~~~ 120 (283)
........+ ....++|.||+++=....
T Consensus 53 ~~~~~~~~~~~~~~~~Dlviv~vKa~q~ 80 (307)
T COG1893 53 TTPVVAATDAEALGPADLVIVTVKAYQL 80 (307)
T ss_pred ccccccccChhhcCCCCEEEEEeccccH
Confidence 111111111 123478999998865443
No 346
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.31 E-value=0.17 Score=47.16 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=50.3
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 92 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~ 92 (283)
.++++|+|+|.+|..+|..|++.+ .+|++.+.... +. ....+.|++.|+++..+ ....
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G--------------~~V~~~d~~~~-~~------~~~~~~l~~~g~~~~~~~~~~~ 63 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG--------------ANVTVNDGKPF-SE------NPEAQELLEEGIKVICGSHPLE 63 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC--------------CEEEEEcCCCc-cc------hhHHHHHHhcCCEEEeCCCCHH
Confidence 468999999999999999999887 89999876421 10 11224467778888754 2211
Q ss_pred EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 93 VDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+. .+ .+|.||.++|..+.
T Consensus 64 ~~------~~----~~d~vV~s~gi~~~ 81 (447)
T PRK02472 64 LL------DE----DFDLMVKNPGIPYT 81 (447)
T ss_pred Hh------cC----cCCEEEECCCCCCC
Confidence 10 00 36777777777654
No 347
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=94.25 E-value=0.063 Score=53.57 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=29.9
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
....+|+|||||++|+.+|..|++.+ .+|+++|+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g--------------~~v~v~E~~ 270 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMG--------------FKVVVLEGR 270 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence 34578999999999999999999876 778888774
No 348
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.24 E-value=0.092 Score=42.97 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=45.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-C--------CCCCCCHHHHHHHHHHHHhCCCEE
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E--------ILSSFDDRLRHYATTQLSKSGVRL 85 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~--------~l~~~~~~~~~~~~~~l~~~gV~v 85 (283)
++|.|||.|+.|+-+|..|++.+ .+|+.++.+ + .+|-..+.+.+.+.+.++..+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--------------~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--------------HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--------------SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCC--------------CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh
Confidence 48999999999999999999988 999999875 2 234455666666666665544444
Q ss_pred EeCceEEEeCCeEEEcCCcE--EEeeEEEEcCCC
Q 023375 86 VRGIVKDVDSQKLILNDGTE--VPYGLLVWSTGV 117 (283)
Q Consensus 86 ~~~~V~~v~~~~v~~~~g~~--i~~d~vi~a~G~ 117 (283)
..+ .+. -.+|.+++|.+.
T Consensus 67 t~~--------------~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 67 TTD--------------IEEAIKDADVVFICVPT 86 (185)
T ss_dssp ESE--------------HHHHHHH-SEEEE----
T ss_pred hhh--------------hhhhhhccceEEEecCC
Confidence 332 111 358899998875
No 349
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.04 E-value=0.059 Score=51.02 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=27.8
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.|+|||+|..|+.+|..|++.+ .+|+|+|++
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G--------------~~V~vlE~~ 32 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKG--------------AKVLVLERY 32 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCC--------------CcEEEEECC
Confidence 5899999999999999999987 788888875
No 350
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=93.96 E-value=0.44 Score=46.08 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEEcCCcEEEeeEEEEcCCCCCchhhhccC
Q 023375 72 HYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 127 (283)
Q Consensus 72 ~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~g~~i~~d~vi~a~G~~~~~~~~~~~ 127 (283)
..+....++.|+.++.+ .|++|.-. +|.+.-| .|++..+|-|+|+.+..+-...+
T Consensus 191 ~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~g 251 (856)
T KOG2844|consen 191 QALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAG 251 (856)
T ss_pred HHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcC
Confidence 33444456889999998 89887432 5777666 59999999999998875544444
No 351
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=93.94 E-value=0.43 Score=42.29 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=52.8
Q ss_pred HHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEE
Q 023375 40 DVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLV 112 (283)
Q Consensus 40 ~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi 112 (283)
++.+.+|.++.+..--++.+. ..+ -+..+...+.+.+.+.|++++.+ +|+++.. +. |.+.+| ++.+|.||
T Consensus 110 e~~~~~p~l~~~~~~g~~~~~~g~v--~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV 186 (337)
T TIGR02352 110 ALRRLEPYLSGGIRGAVFYPDDAHV--DPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVV 186 (337)
T ss_pred HHHHhCCCCCcccceEEEcCCCceE--ChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEE
Confidence 344555655433333333332 111 24677888888899999999998 8988864 33 344455 79999999
Q ss_pred EcCCCCCchh
Q 023375 113 WSTGVGPSTL 122 (283)
Q Consensus 113 ~a~G~~~~~~ 122 (283)
+|+|.....+
T Consensus 187 ~a~G~~~~~l 196 (337)
T TIGR02352 187 LAAGAWAGEL 196 (337)
T ss_pred EcCChhhhhc
Confidence 9999766544
No 352
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.93 E-value=0.046 Score=51.71 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=32.5
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 62 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~ 62 (283)
....|+|||||.+|+-+|..++..+ .+|.|+|++++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RG--------------l~v~LvE~~D~ 46 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRG--------------LKVALVEKGDL 46 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCC--------------CeEEEEecCcc
Confidence 4468999999999999999999988 99999998765
No 353
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.88 E-value=0.095 Score=43.52 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=47.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 92 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~ 92 (283)
+.++|+|||||..|...|..|.+.+ .+|+++++ .+.+++. +...+..+.+.....
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--------------a~V~VIs~-----~~~~~l~----~l~~~~~i~~~~~~~-- 63 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--------------AHIVVISP-----ELTENLV----KLVEEGKIRWKQKEF-- 63 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEcC-----CCCHHHH----HHHhCCCEEEEecCC--
Confidence 4579999999999999999999876 89999964 2333333 223333344422111
Q ss_pred EeCCeEEEcCCcEEEeeEEEEcCCCCC
Q 023375 93 VDSQKLILNDGTEVPYGLLVWSTGVGP 119 (283)
Q Consensus 93 v~~~~v~~~~g~~i~~d~vi~a~G~~~ 119 (283)
....--.+|.||.||+...
T Consensus 64 --------~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 64 --------EPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred --------ChhhcCCceEEEEcCCCHH
Confidence 1111234899999998654
No 354
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.82 E-value=0.096 Score=41.56 Aligned_cols=31 Identities=29% Similarity=0.347 Sum_probs=28.2
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|.|+|||..|..+|..|++.+ .+|+|..+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--------------~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--------------HEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--------------EEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcC--------------CEEEEEecc
Confidence 6899999999999999999987 899999654
No 355
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.76 E-value=0.26 Score=46.03 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=52.4
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHh--CCCEEEeCceE
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK--SGVRLVRGIVK 91 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~--~gV~v~~~~V~ 91 (283)
.++++|+|.|.+|+.+|..|++.+ .+|++.+.....+ . .+.|++ .||++..+.-.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g--------------~~v~~~d~~~~~~----~-----~~~l~~~~~gi~~~~g~~~ 61 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG--------------AEVAAYDAELKPE----R-----VAQIGKMFDGLVFYTGRLK 61 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCCCch----h-----HHHHhhccCCcEEEeCCCC
Confidence 468999999999999999999887 8999998753221 1 122444 47777655210
Q ss_pred EEeCCeEEEcCCcEEEeeEEEEcCCCCCc-hhh
Q 023375 92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLV 123 (283)
Q Consensus 92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~-~~~ 123 (283)
.. ..-.+|.||.++|..|. +.+
T Consensus 62 ----~~------~~~~~d~vv~spgi~~~~p~~ 84 (445)
T PRK04308 62 ----DA------LDNGFDILALSPGISERQPDI 84 (445)
T ss_pred ----HH------HHhCCCEEEECCCCCCCCHHH
Confidence 00 01248999999999885 433
No 356
>PLN02676 polyamine oxidase
Probab=93.70 E-value=0.089 Score=49.79 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=28.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCcc-EEEEEeCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~-~V~li~~~ 60 (283)
...+|+|||||++|+.+|..|++.+ . +|+++|+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g--------------~~~v~vlE~~ 59 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAG--------------IEDILILEAT 59 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcC--------------CCcEEEecCC
Confidence 3468999999999999999999876 4 58888875
No 357
>PLN02612 phytoene desaturase
Probab=93.68 E-value=0.085 Score=50.91 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=29.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+.++|+|||||.+|+.+|.+|++.+ .+|+++|+.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g--------------~~~~~~e~~ 125 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAG--------------HKPILLEAR 125 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecC
Confidence 4578999999999999999999877 788888875
No 358
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=93.67 E-value=0.1 Score=48.02 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=32.0
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI 62 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~ 62 (283)
.+..+|+|||+|.+|+-.|.+|.+.+ .+|+++|.. ++
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG--------------~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAG--------------YQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcC--------------cEEEEEeccCCc
Confidence 34568999999999999999999887 899999875 44
No 359
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=93.64 E-value=0.072 Score=50.41 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=29.3
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 59 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~ 59 (283)
...|+|||||.+|+.+|.+|++.. +..+|+|+|+
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~------------~~~~V~vlEr 39 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELD------------PDWNIEVVER 39 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCC------------CCCeEEEEEc
Confidence 357999999999999999999873 2289999998
No 360
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=93.62 E-value=0.078 Score=51.31 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 2 FLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 2 ~~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++|..++++-.....|+|||+|.+|+.+|..+++.+ .+|+|||+.
T Consensus 4 ~~~~~~~~~~~~~~dvvvvG~G~aG~~aa~~~~~~g--------------~~v~l~ek~ 48 (578)
T PRK12843 4 VVSELSPERWDAEFDVIVIGAGAAGMSAALFAAIAG--------------LKVLLVERT 48 (578)
T ss_pred ccccCCCCCCCCCCCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence 456666665555568999999999999999999876 788888763
No 361
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.56 E-value=0.26 Score=46.28 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=39.7
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG 88 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~ 88 (283)
.++|+|+|.|.+|+.+|..|...+ .+|++.+..+.. ..+ ...+.|++.|+.+..+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--------------~~V~~~D~~~~~-~~~-----~~~~~l~~~gi~~~~~ 68 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--------------AKVTAFDKKSEE-ELG-----EVSNELKELGVKLVLG 68 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--------------CEEEEECCCCCc-cch-----HHHHHHHhCCCEEEeC
Confidence 478999999999999999999887 899999875311 111 1123367778888754
No 362
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.55 E-value=0.22 Score=46.71 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=51.0
Q ss_pred ccCeEEEEccCcHHHH-HHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 023375 13 RLLHCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve-~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V 90 (283)
+.++|+|+|-|-+|+. +|..|.+.+ .+|++.+.... +. . +.|++.|+++..+ ..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G--------------~~V~~~D~~~~-----~~----~-~~l~~~gi~~~~~~~~ 61 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLG--------------YKVSGSDLKES-----AV----T-QRLLELGAIIFIGHDA 61 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCC--------------CeEEEECCCCC-----hH----H-HHHHHCCCEEeCCCCH
Confidence 3468999999999999 699998887 89999887532 11 1 2367778888754 21
Q ss_pred EEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 91 KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
..+ -.+|.||.++|+.+.
T Consensus 62 ~~~------------~~~d~vv~spgi~~~ 79 (461)
T PRK00421 62 ENI------------KDADVVVYSSAIPDD 79 (461)
T ss_pred HHC------------CCCCEEEECCCCCCC
Confidence 111 037888888888775
No 363
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=93.49 E-value=0.12 Score=49.50 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=29.9
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.++++|||||.+|+.+|..|.+.++ -++.+|+|+|+.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~----------~~G~~VtIlEk~ 58 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQ----------MPGENITILEEL 58 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccC----------CCCCcEEEEeCC
Confidence 4799999999999999999987541 023789999875
No 364
>PRK02106 choline dehydrogenase; Validated
Probab=93.48 E-value=0.082 Score=50.93 Aligned_cols=32 Identities=28% Similarity=0.542 Sum_probs=26.5
Q ss_pred CeEEEEccCcHHHHHHHHHHH-hhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~-~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.++|||||.+|+-+|..|++ .+ .+|.+||++
T Consensus 6 ~D~iIVG~G~aG~vvA~rLae~~g--------------~~VlvlEaG 38 (560)
T PRK02106 6 YDYIIIGAGSAGCVLANRLSEDPD--------------VSVLLLEAG 38 (560)
T ss_pred CcEEEECCcHHHHHHHHHHHhCCC--------------CeEEEecCC
Confidence 479999999999999999998 34 666666665
No 365
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.44 E-value=0.33 Score=42.73 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=46.9
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 94 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~ 94 (283)
.+|+|+|+|..|.-+|..|++.+ .+|+++.+. +. .+.+.+.|+.+....-....
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g--------------~~V~~~~r~-------~~-----~~~~~~~g~~~~~~~~~~~~ 54 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG--------------RDVTFLVRP-------KR-----AKALRERGLVIRSDHGDAVV 54 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--------------CceEEEecH-------HH-----HHHHHhCCeEEEeCCCeEEe
Confidence 37999999999999999999876 889998541 11 12355567666433100001
Q ss_pred CCeEEEcCCcE--EEeeEEEEcCCCCC
Q 023375 95 SQKLILNDGTE--VPYGLLVWSTGVGP 119 (283)
Q Consensus 95 ~~~v~~~~g~~--i~~d~vi~a~G~~~ 119 (283)
...+ ..+.++ -++|.+|+|+....
T Consensus 55 ~~~~-~~~~~~~~~~~d~vilavk~~~ 80 (305)
T PRK12921 55 PGPV-ITDPEELTGPFDLVILAVKAYQ 80 (305)
T ss_pred ccee-ecCHHHccCCCCEEEEEecccC
Confidence 1111 122221 35788888877544
No 366
>PLN03000 amine oxidase
Probab=93.38 E-value=0.11 Score=52.01 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=28.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
...+|+|||||++|+.+|..|...+ .+|+++|+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G--------------~~V~VlE~~ 216 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFG--------------FKVTVLEGR 216 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCC--------------CcEEEEEcc
Confidence 3478999999999999999999876 677777764
No 367
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=93.33 E-value=0.13 Score=50.21 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=35.5
Q ss_pred CCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 140 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 140 ~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
++++| +.|++||+|||+.. .....+..+..+|++++.++...+.
T Consensus 389 ~~~~T-~v~glyA~Ge~~~~-------~~~~l~~~s~~~g~~ag~~~~~~~~ 432 (608)
T PRK06854 389 YNRMT-TVEGLFAAGDVVGG-------SPHKFSSGSFAEGRIAAKAAVRYIL 432 (608)
T ss_pred ccccc-CCCCEEEeeecCCC-------CcchhHHHHHHHHHHHHHHHHHHHH
Confidence 88998 89999999999742 1244667788899999999887765
No 368
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=93.27 E-value=0.15 Score=44.93 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=30.7
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS 64 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~ 64 (283)
.+++|||+|.+|.-+|.+++.++ ++|.+||+. ++..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~g--------------k~VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLG--------------KRVLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcC--------------CEEEEEeccccCCC
Confidence 36899999999999999888887 899999986 5544
No 369
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.27 E-value=0.097 Score=45.94 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=31.3
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL 63 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l 63 (283)
..+|.|||+|..|..+|..++..+ .+|++++.+ +.+
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G--------------~~V~l~d~~~~~~ 41 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG--------------VDVLVFETTEELA 41 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC--------------CEEEEEECCHHHH
Confidence 358999999999999999999877 999999886 433
No 370
>PTZ00188 adrenodoxin reductase; Provisional
Probab=93.26 E-value=1.9 Score=40.83 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=32.3
Q ss_pred cEEEeeEEEEcCCCCCchhhhccCCCCCCCCccccCCCccc-CCCCCEEEeccccc
Q 023375 104 TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV-PSVQDVFAVGDCSG 158 (283)
Q Consensus 104 ~~i~~d~vi~a~G~~~~~~~~~~~l~~~~~g~i~Vd~~l~~-~~~~~VfaiGD~a~ 158 (283)
+++++|+|+-++|.+..++. +++.|.+ +.+.. .++ ...|++|+.|=+..
T Consensus 366 ~~~~~~lV~rsiGY~g~p~~---g~pFd~~--~~n~~-grv~~~~~g~Y~~GWiKr 415 (506)
T PTZ00188 366 KVLVTPLVIFATGFKKSNFA---ENLYNQS--VQMFK-EDIGQHKFAIFKAGWFDK 415 (506)
T ss_pred EEEEcCEEEEcccccCCCCC---CCCcccc--CCCCC-CcccCCCCCcEEeeecCc
Confidence 36899999999999998653 3444422 33321 221 13699999996665
No 371
>PLN02568 polyamine oxidase
Probab=93.23 E-value=0.12 Score=49.47 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=28.8
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+|+|||+|.+|+.+|..|++.+.. ..+.+|+|+|+.
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g~~---------~~~~~v~v~E~~ 42 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSSAA---------NDMFELTVVEGG 42 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcccc---------cCCceEEEEeCC
Confidence 5899999999999999999976410 112678888875
No 372
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.23 E-value=0.13 Score=42.72 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=32.7
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++-+..+|+|||+|-.|.++|..|+..+- .++++++..
T Consensus 16 q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-------------g~i~lvD~D 54 (200)
T TIGR02354 16 VQKLEQATVAICGLGGLGSNVAINLARAGI-------------GKLILVDFD 54 (200)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCC-------------CEEEEECCC
Confidence 445567899999999999999999998872 379998875
No 373
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.21 E-value=0.12 Score=43.74 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=33.2
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++-+..+|+|||.|.+|.++|..|+..+- .++++++..
T Consensus 16 q~~L~~~~VlivG~GglGs~va~~La~~Gv-------------g~i~lvD~D 54 (228)
T cd00757 16 QEKLKNARVLVVGAGGLGSPAAEYLAAAGV-------------GKLGLVDDD 54 (228)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCC
Confidence 455567899999999999999999999873 688998775
No 374
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=93.12 E-value=0.69 Score=41.02 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHhh
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFI 37 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~ 37 (283)
-.|||||||.+|+..+..|...+
T Consensus 10 spvvVIGgGLAGLsasn~iin~g 32 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKG 32 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcC
Confidence 35999999999999999998766
No 375
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.00 E-value=0.14 Score=42.55 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=33.7
Q ss_pred HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+++-+..+|+|||.|..|.++|..|+..+- .++++++..
T Consensus 15 ~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-------------~~i~lvD~d 54 (202)
T TIGR02356 15 GQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-------------GTIVIVDDD 54 (202)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-------------CeEEEecCC
Confidence 3455567899999999999999999998872 589999886
No 376
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.98 E-value=0.29 Score=40.51 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=33.7
Q ss_pred HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+++-+..+|+|||.|..|.|+|..|+..+- .++++++..
T Consensus 13 ~q~~L~~s~VlviG~gglGsevak~L~~~GV-------------g~i~lvD~d 52 (198)
T cd01485 13 AQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-------------DSITIVDHR 52 (198)
T ss_pred HHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEECC
Confidence 3455667899999999999999999998873 679999875
No 377
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=92.95 E-value=0.11 Score=50.15 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=29.3
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..|+|||+|.+|+.+|.++++.+ .+|+|+|+.
T Consensus 10 ~DVvVVG~G~aGl~AA~~aa~~G--------------~~v~llEk~ 41 (574)
T PRK12842 10 CDVLVIGSGAGGLSAAITARKLG--------------LDVVVLEKE 41 (574)
T ss_pred CCEEEECcCHHHHHHHHHHHHcC--------------CeEEEEecC
Confidence 47999999999999999999877 899999986
No 378
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.89 E-value=0.16 Score=45.22 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=30.4
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++..+|+|||+|.+|..+|..|...+-. .++.|++.+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~------------~el~L~D~~ 40 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIA------------DELVIIDIN 40 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCC------------CEEEEEeCC
Confidence 4567999999999999999999865411 489999875
No 379
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=92.83 E-value=0.3 Score=44.46 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEcCCcEEEeeEEEEcCCCCCchhhh
Q 023375 68 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVK 124 (283)
Q Consensus 68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~d~vi~a~G~~~~~~~~ 124 (283)
..+...+.+.+++ |++++.+ .|.+++.+ .|++.+|+.+.+|.||+|+|.....+..
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~ 195 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQ 195 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccccc
Confidence 5666777777888 9999998 79888643 3666778779999999999987665443
No 380
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=92.75 E-value=0.12 Score=49.21 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=27.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|||||+| +|+.+|.++++.+ .+|+|||+.
T Consensus 8 ~DVvVVG~G-aGl~aA~~aa~~G--------------~~V~vlEk~ 38 (513)
T PRK12837 8 VDVLVAGSG-GGVAGAYTAAREG--------------LSVALVEAT 38 (513)
T ss_pred cCEEEECch-HHHHHHHHHHHCC--------------CcEEEEecC
Confidence 479999999 9999999999877 888888864
No 381
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.68 E-value=0.15 Score=45.82 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=34.7
Q ss_pred CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375 7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61 (283)
Q Consensus 7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~ 61 (283)
+.+++-+.++|+|||.|..|.++|..|+..+- .+++|++...
T Consensus 17 ~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-------------g~i~lvD~D~ 58 (338)
T PRK12475 17 EGQRKIREKHVLIVGAGALGAANAEALVRAGI-------------GKLTIADRDY 58 (338)
T ss_pred HHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCCc
Confidence 34456677899999999999999999999872 4899998863
No 382
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.52 E-value=0.18 Score=41.66 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=34.3
Q ss_pred HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61 (283)
Q Consensus 8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~ 61 (283)
.+++-+..+|+|||.|..|.|+|..|+..+- .++++++...
T Consensus 15 ~Q~~L~~s~VlIiG~gglG~evak~La~~GV-------------g~i~lvD~d~ 55 (197)
T cd01492 15 AQKRLRSARILLIGLKGLGAEIAKNLVLSGI-------------GSLTILDDRT 55 (197)
T ss_pred HHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-------------CEEEEEECCc
Confidence 3455667899999999999999999998873 6899998763
No 383
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.43 E-value=0.15 Score=49.56 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=28.3
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..|+|||+|.+|+-+|.++++.+ .+|+|++..
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G--------------~~V~lieK~ 35 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAG--------------VHVDLFSLV 35 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcC--------------CcEEEEEcc
Confidence 47999999999999999999876 889999853
No 384
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.37 E-value=0.19 Score=42.87 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=36.5
Q ss_pred CCCCCH--HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375 3 LAGISE--EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61 (283)
Q Consensus 3 ~~~~~~--~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~ 61 (283)
+++..+ +++-+..+|+|||.|..|.++|..|+..+- .++++++...
T Consensus 11 l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-------------g~i~lvD~D~ 58 (240)
T TIGR02355 11 LRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-------------GNLTLLDFDT 58 (240)
T ss_pred cccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-------------CEEEEEeCCc
Confidence 444443 455667899999999999999999998873 6899998763
No 385
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.28 E-value=0.64 Score=41.65 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=49.0
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-c-eEE
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-I-VKD 92 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~-V~~ 92 (283)
++|.|||+|..|.-+|..|++.+ .+|++++++ + . .+.+.+.|+.+... . -..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G--------------~~V~~~~r~-------~----~-~~~~~~~g~~~~~~~~~~~~ 56 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAG--------------ADVTLIGRA-------R----I-GDELRAHGLTLTDYRGRDVR 56 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcC--------------CcEEEEecH-------H----H-HHHHHhcCceeecCCCccee
Confidence 57999999999999999999877 899999752 1 1 23456667766432 1 111
Q ss_pred EeCCeEEEc-CCc-EEEeeEEEEcCCCCC
Q 023375 93 VDSQKLILN-DGT-EVPYGLLVWSTGVGP 119 (283)
Q Consensus 93 v~~~~v~~~-~g~-~i~~d~vi~a~G~~~ 119 (283)
+....+... +-+ .-.+|.||+|+....
T Consensus 57 ~~~~~~~~~~~~~~~~~~D~vil~vk~~~ 85 (341)
T PRK08229 57 VPPSAIAFSTDPAALATADLVLVTVKSAA 85 (341)
T ss_pred cccceeEeccChhhccCCCEEEEEecCcc
Confidence 111222221 111 235888888886543
No 386
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.22 E-value=0.2 Score=45.10 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=33.2
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++-+..+|+|||+|-.|.++|..|+..+- .+|++++..
T Consensus 19 Q~~L~~~~VlVvG~GglGs~va~~La~aGv-------------g~i~lvD~D 57 (339)
T PRK07688 19 QQKLREKHVLIIGAGALGTANAEMLVRAGV-------------GKVTIVDRD 57 (339)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence 345566899999999999999999998872 489999886
No 387
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.18 E-value=0.16 Score=49.30 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=28.3
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||||.+|+-+|.++++.+ .+|+||+..
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G--------------~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAG--------------LSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence 58999999999999999998876 788888874
No 388
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.14 E-value=0.21 Score=42.77 Aligned_cols=39 Identities=28% Similarity=0.287 Sum_probs=33.0
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++-+..+|+|||.|..|.++|..|+..+- .++++++..
T Consensus 27 Q~~L~~~~VliiG~GglGs~va~~La~~Gv-------------g~i~lvD~D 65 (245)
T PRK05690 27 QEKLKAARVLVVGLGGLGCAASQYLAAAGV-------------GTLTLVDFD 65 (245)
T ss_pred HHHhcCCeEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCC
Confidence 445566899999999999999999998873 689999875
No 389
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.12 E-value=0.57 Score=44.16 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=50.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
..++|+|+|.|-+|+.+|..|.+.+ .+|++.+... .. ..+.+++.||++..+ .-.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G--------------~~V~~~D~~~------~~----~~~~l~~~gi~~~~~~~~~ 69 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELG--------------CDVVVADDNE------TA----RHKLIEVTGVADISTAEAS 69 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCC--------------CEEEEECCCh------HH----HHHHHHhcCcEEEeCCCch
Confidence 3468999999999999999998877 8888887531 01 122345578888754 110
Q ss_pred EEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
+.+ -.+|.||.++|+.+.
T Consensus 70 ----~~~-------~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 70 ----DQL-------DSFSLVVTSPGWRPD 87 (473)
T ss_pred ----hHh-------cCCCEEEeCCCCCCC
Confidence 001 137899999999876
No 390
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.07 E-value=0.16 Score=49.68 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=28.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||+|.+|+-+|.++++.+ .+|+||+..
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G--------------~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERG--------------LRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecc
Confidence 47999999999999999999876 788888774
No 391
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.07 E-value=0.21 Score=42.19 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=29.4
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++++|||+|..|..+|..|.+.+ .+|++|+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--------------~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--------------HNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--------------CceEEEEcC
Confidence 47999999999999999999987 899999875
No 392
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=92.06 E-value=0.18 Score=48.46 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=28.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||+|.+|+-+|.++++.+ .+|+|||+.
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G--------------~~VivlEK~ 36 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAG--------------KRVLLLDQE 36 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence 47999999999999999999877 889998865
No 393
>PRK08328 hypothetical protein; Provisional
Probab=92.01 E-value=0.23 Score=42.15 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=34.2
Q ss_pred CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+.+++-+..+|+|||.|-.|.++|..|+..+- .++++++..
T Consensus 20 ~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-------------g~i~lvD~D 60 (231)
T PRK08328 20 EGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-------------GRILLIDEQ 60 (231)
T ss_pred HHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCC
Confidence 34455667899999999999999999999873 689999875
No 394
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.98 E-value=0.19 Score=48.75 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=29.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..|||||+|.+|+.+|.++++.+ .+|+|+|+.
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G--------------~~VivlEk~ 43 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARG--------------LDTLVVEKS 43 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCC--------------CcEEEEEcC
Confidence 57999999999999999999877 899999875
No 395
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.94 E-value=0.23 Score=41.53 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+++-+..+|+|||.|-.|.++|..|+..+- .++++++..
T Consensus 22 ~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-------------g~i~lvD~D 61 (212)
T PRK08644 22 LLEKLKKAKVGIAGAGGLGSNIAVALARSGV-------------GNLKLVDFD 61 (212)
T ss_pred HHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence 3456677899999999999999999998872 578898876
No 396
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.85 E-value=0.18 Score=49.08 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=27.7
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||||.+|+.+|.++++.+ .+|+|+++.
T Consensus 13 ~DVvVIG~G~AGl~AAl~Aa~~G--------------~~V~lveK~ 44 (598)
T PRK09078 13 YDVVVVGAGGAGLRATLGMAEAG--------------LKTACITKV 44 (598)
T ss_pred cCEEEECccHHHHHHHHHHHHcC--------------CcEEEEEcc
Confidence 47999999999999999999876 788888664
No 397
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=91.83 E-value=0.15 Score=49.66 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=26.2
Q ss_pred EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
|+|||+|.+|+-+|.++++.+ .+|+|+++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G--------------~~VilleK~ 30 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELG--------------YHVKLFSYV 30 (603)
T ss_pred CEEECccHHHHHHHHHHHHcC--------------CCEEEEEec
Confidence 689999999999999998876 778888764
No 398
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.76 E-value=0.29 Score=41.22 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=48.2
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 92 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~ 92 (283)
+.++|+|||||..|..=+..|.+.+ .+|++|.+ .+.+++.. ......|+++....
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~g--------------A~VtVVap-----~i~~el~~----l~~~~~i~~~~r~~-- 78 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKG--------------CYVYILSK-----KFSKEFLD----LKKYGNLKLIKGNY-- 78 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEcC-----CCCHHHHH----HHhCCCEEEEeCCC--
Confidence 4568999999999999888888876 89999964 34445433 23334466654321
Q ss_pred EeCCeEEEcCCcEEEeeEEEEcCCCC
Q 023375 93 VDSQKLILNDGTEVPYGLLVWSTGVG 118 (283)
Q Consensus 93 v~~~~v~~~~g~~i~~d~vi~a~G~~ 118 (283)
++ +.--.+++||.||+-.
T Consensus 79 -~~-------~dl~g~~LViaATdD~ 96 (223)
T PRK05562 79 -DK-------EFIKDKHLIVIATDDE 96 (223)
T ss_pred -Ch-------HHhCCCcEEEECCCCH
Confidence 11 1112378999998743
No 399
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=91.73 E-value=0.22 Score=46.55 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=31.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 63 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l 63 (283)
-.|+|||+|.+|+-+|+.|+..+ ++|.++|++...
T Consensus 5 ~DViViGtGL~e~ilAa~Ls~~G--------------kkVLhlD~n~~y 39 (443)
T PTZ00363 5 YDVIVCGTGLKECILSGLLSVNG--------------KKVLHMDRNPYY 39 (443)
T ss_pred ceEEEECCChHHHHHHhhhhhCC--------------CEEEEecCCCCc
Confidence 46999999999999999999887 999999998443
No 400
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=91.68 E-value=0.21 Score=46.41 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=28.3
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..|+|||+|.+|+.+|..+++.+ .+|++|+++
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g--------------~~v~vi~~~ 34 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAG--------------KRVALVAKG 34 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCC--------------CcEEEEECC
Confidence 47999999999999999999877 889999864
No 401
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.68 E-value=0.19 Score=48.55 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=28.0
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||+|.+|+-+|.++++.+ .+|+|++..
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G--------------~~V~lveK~ 37 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAG--------------FKVAVISKV 37 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCC--------------CcEEEEEcc
Confidence 47999999999999999998876 788888864
No 402
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=91.67 E-value=0.25 Score=47.77 Aligned_cols=45 Identities=18% Similarity=0.376 Sum_probs=37.7
Q ss_pred CCCCCCHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 2 FLAGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 2 ~~~~~~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+|+.+.+ +-+..+|+|||+|-.|..+|..|+.++- .++++++.+
T Consensus 327 llP~l~~e-kL~~~kVLIvGaGGLGs~VA~~La~~GV-------------g~ItlVD~D 371 (664)
T TIGR01381 327 LHPDLQLE-RYSQLKVLLLGAGTLGCNVARCLIGWGV-------------RHITFVDNG 371 (664)
T ss_pred cCChhhHH-HHhcCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEEcCC
Confidence 46777774 5566799999999999999999999984 689999875
No 403
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=91.64 E-value=0.18 Score=48.28 Aligned_cols=22 Identities=32% Similarity=0.777 Sum_probs=19.8
Q ss_pred eEEEEccCcHHHHHHHHHHHhh
Q 023375 16 HCVVVGGGPTGVEFSGELSDFI 37 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~ 37 (283)
.++|||||.+|+-+|..|++.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~ 22 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDV 22 (532)
T ss_pred CEEEECCCchHHHHHHHhccCC
Confidence 3799999999999999999764
No 404
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=91.62 E-value=0.45 Score=41.68 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=34.8
Q ss_pred CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+.+++-+..+|+|||.|-.|.|+|..|+..+- .+|+|++..
T Consensus 12 eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-------------g~itI~D~d 52 (286)
T cd01491 12 EAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-------------KSVTLHDTK 52 (286)
T ss_pred HHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-------------CeEEEEcCC
Confidence 44566677899999999999999999998873 689999875
No 405
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.62 E-value=0.22 Score=43.60 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=29.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++|.|||+|..|..+|..++..+ .+|++++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G--------------~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG--------------FDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC--------------CeEEEEeCC
Confidence 58999999999999999999876 899999875
No 406
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.54 E-value=0.76 Score=43.54 Aligned_cols=73 Identities=26% Similarity=0.333 Sum_probs=50.1
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 92 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~ 92 (283)
..++|+|+|.|.+|+.++..|...+ .+|++.+... .. . +.+++.|+.+..+.-
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G--------------~~v~~~D~~~------~~----~-~~l~~~g~~~~~~~~-- 63 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFG--------------ARPTVCDDDP------DA----L-RPHAERGVATVSTSD-- 63 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC--------------CEEEEEcCCH------HH----H-HHHHhCCCEEEcCcc--
Confidence 4578999999999999998888776 8999987431 11 1 235667887765410
Q ss_pred EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 93 VDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
..+.+ -.+|.||.++|+.+.
T Consensus 64 -~~~~l-------~~~D~VV~SpGi~~~ 83 (488)
T PRK03369 64 -AVQQI-------ADYALVVTSPGFRPT 83 (488)
T ss_pred -hHhHh-------hcCCEEEECCCCCCC
Confidence 00000 136999999999876
No 407
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.37 E-value=0.43 Score=40.78 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=33.1
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCC--CccEEEEEeCC
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK--DYIHVTLIEAN 60 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~--~~~~V~li~~~ 60 (283)
.-..+..+|+|||+|-+|.+++..|++.+-. ...+. .+.++++++..
T Consensus 6 ~~~~~~~~V~vvG~GGlGs~v~~~Lar~G~a-----~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 6 ALLSRPVSVVLVGAGGTGSQVIAGLARLHHA-----LKALGHPGGLAVTVYDDD 54 (244)
T ss_pred HHHhCCCeEEEEcCChHHHHHHHHHHHcccc-----ccccCCCCCCEEEEECCC
Confidence 3346778999999999999999999986410 00001 12489999875
No 408
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.28 E-value=0.27 Score=47.75 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=28.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||+|.+|+-+|.++++.+ .+|+|++..
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G--------------~~V~lleK~ 39 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSG--------------QSCALLSKV 39 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcC--------------CcEEEEEcc
Confidence 36999999999999999998876 899999875
No 409
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.25 E-value=0.23 Score=47.91 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=29.4
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||+|.+|+-+|..+++.+ .+|+|||+.
T Consensus 8 ~DvvVvG~G~aG~~aA~~aa~~G--------------~~v~llEk~ 39 (557)
T PRK07843 8 YDVVVVGSGAAGMVAALTAAHRG--------------LSTVVVEKA 39 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence 47999999999999999999887 899999985
No 410
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.25 E-value=0.23 Score=47.91 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=28.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||+|.+|+.+|.++++.+ .+|+|||+.
T Consensus 7 ~DvvIiG~G~aGl~aA~~~a~~G--------------~~v~liEk~ 38 (557)
T PRK12844 7 YDVVVVGSGGGGMCAALAAADSG--------------LEPLIVEKQ 38 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence 47999999999999999999887 788888864
No 411
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=91.19 E-value=0.23 Score=48.50 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=27.9
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||||.+|+-+|.++++.+ .+|+|++..
T Consensus 30 ~DVlVIG~G~AGl~AAi~Aa~~G--------------~~V~lveK~ 61 (617)
T PTZ00139 30 YDAVVVGAGGAGLRAALGLVELG--------------YKTACISKL 61 (617)
T ss_pred cCEEEECccHHHHHHHHHHHHcC--------------CcEEEEecc
Confidence 47999999999999999998876 788888764
No 412
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.16 E-value=0.23 Score=48.64 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=27.3
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 59 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~ 59 (283)
..|+|||+|.+|+-+|.++++.+ .+|+|++.
T Consensus 36 ~DVlVVG~G~AGl~AAi~Aae~G--------------~~VilieK 66 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATLGELG--------------YNVKVFCY 66 (640)
T ss_pred cCEEEECccHHHHHHHHHHHHcC--------------CcEEEEec
Confidence 47999999999999999998876 78888874
No 413
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.15 E-value=0.4 Score=36.95 Aligned_cols=77 Identities=10% Similarity=0.168 Sum_probs=48.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
+.++++|||+|-+|-.++..|...+. .+|+++.+.. ++ .+.+.+.+....+++..- ...
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-------------~~i~i~nRt~------~r-a~~l~~~~~~~~~~~~~~~~~~ 70 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-------------KEITIVNRTP------ER-AEALAEEFGGVNIEAIPLEDLE 70 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-------------SEEEEEESSH------HH-HHHHHHHHTGCSEEEEEGGGHC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-------------CEEEEEECCH------HH-HHHHHHHcCccccceeeHHHHH
Confidence 56899999999999999999998862 5699997741 22 233333343334444321 111
Q ss_pred EEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
...-.+|.||.||+....
T Consensus 71 -----------~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 71 -----------EALQEADIVINATPSGMP 88 (135)
T ss_dssp -----------HHHHTESEEEE-SSTTST
T ss_pred -----------HHHhhCCeEEEecCCCCc
Confidence 011249999999987644
No 414
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=91.12 E-value=0.78 Score=43.42 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcEEEeeEEEEcCCCC
Q 023375 68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 118 (283)
Q Consensus 68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~d~vi~a~G~~ 118 (283)
..+.+.+.+.+++.|++++.+ +|++|.. + +|.+.+|+++.+|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 467778888899999999999 8988853 2 5777889899999999999853
No 415
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=91.08 E-value=0.27 Score=47.13 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=27.8
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.|+|||+|++|.-+|..|++.+ .+|.+||++
T Consensus 2 dv~ivg~Gp~G~~~a~~l~~~g--------------~~v~~~e~~ 32 (544)
T TIGR02462 2 DVFIAGSGPIGCTYARLCVDAG--------------LKVAMVEIG 32 (544)
T ss_pred cEEEECCchHHHHHHHHHHHCC--------------CeEEEEecc
Confidence 5899999999999999999876 888888875
No 416
>PRK08223 hypothetical protein; Validated
Probab=91.02 E-value=0.35 Score=42.36 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=34.7
Q ss_pred CHHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 7 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 7 ~~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+.+++-+..+|+|||.|-.|.++|..|+..+- .+++|++..
T Consensus 20 e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-------------G~i~lvD~D 60 (287)
T PRK08223 20 TEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-------------GKFTIADFD 60 (287)
T ss_pred HHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-------------CeEEEEeCC
Confidence 34556677899999999999999999999873 688998875
No 417
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=90.97 E-value=0.69 Score=43.77 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-e--EEE---cCC--cEEEeeEEEEcCCCCCchhhhccCCC
Q 023375 68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-K--LIL---NDG--TEVPYGLLVWSTGVGPSTLVKSLDLP 129 (283)
Q Consensus 68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~-~--v~~---~~g--~~i~~d~vi~a~G~~~~~~~~~~~l~ 129 (283)
..+...+.+.+++.|++++.+ +|++++. + . +.+ .+| .++.+|.||+|+|.....+.+.+|++
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 567777778888899999999 8998864 2 2 332 223 36899999999999887777777665
No 418
>PLN02602 lactate dehydrogenase
Probab=90.91 E-value=0.47 Score=42.90 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=28.3
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+|+|||+|..|..+|..|....- ..++.|++..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l------------~~el~LiDi~ 71 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDL------------ADELALVDVN 71 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------------CCEEEEEeCC
Confidence 699999999999999999886441 1589999875
No 419
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.88 E-value=0.36 Score=40.99 Aligned_cols=40 Identities=33% Similarity=0.261 Sum_probs=34.0
Q ss_pred HHHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 8 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 8 ~~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.+++-+..+|+|+|.|-.|.++|..|++.+- .+++|++..
T Consensus 5 ~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-------------g~i~LvD~D 44 (231)
T cd00755 5 GLEKLRNAHVAVVGLGGVGSWAAEALARSGV-------------GKLTLIDFD 44 (231)
T ss_pred HHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-------------CEEEEECCC
Confidence 3456677899999999999999999998873 689999875
No 420
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=90.87 E-value=0.25 Score=48.33 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=28.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||+|.+|+-+|.++++.+ .+|+||+..
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G--------------~~VilveK~ 82 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHG--------------FNTACITKL 82 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcC--------------CcEEEEEcC
Confidence 57999999999999999999876 788888765
No 421
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=90.81 E-value=0.25 Score=48.59 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=28.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||||.+|+-+|.++++.+ .+|+|++..
T Consensus 6 ~DVlVIG~G~AGl~AAi~Aae~G--------------~~VivleK~ 37 (657)
T PRK08626 6 TDALVIGAGLAGLRVAIAAAQRG--------------LDTIVLSLV 37 (657)
T ss_pred ccEEEECccHHHHHHHHHHHHcC--------------CCEEEEeCC
Confidence 36999999999999999999876 888888853
No 422
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=90.78 E-value=0.23 Score=47.68 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=29.4
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.-.+||||+|..|..+|..|++.+ .+|.++|++
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g--------------~~VllLEaG 39 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAG--------------LSVLVLEAG 39 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCC--------------CeEEEEeCC
Confidence 358999999999999999999654 899999987
No 423
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=90.72 E-value=0.28 Score=47.74 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=25.9
Q ss_pred eEEEEccCcHHHHHHHHHH----HhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELS----DFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~----~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.|+|||||.+|+-+|.+++ +.+ .+|+|+++.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G--------------~~VilieK~ 35 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKG--------------LKIVLVEKA 35 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCC--------------CeEEEEEcc
Confidence 4899999999999999998 334 788888774
No 424
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=90.70 E-value=0.3 Score=47.29 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=29.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
....|+|||+|.+|+.+|.++++.+ .+|+|||+.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g--------------~~v~~iek~ 44 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHG--------------LKVIVVEKD 44 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecC
Confidence 3468999999999999999999876 888888864
No 425
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.70 E-value=0.44 Score=36.95 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=28.3
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||.|-.|.++|..|+..+- .++++++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-------------~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-------------GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-------------CEEEEEcCC
Confidence 58999999999999999998872 589999875
No 426
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=90.68 E-value=0.76 Score=41.10 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=30.7
Q ss_pred cccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++.+|.|||+ |..|..+|..|....-. ......++.|++..
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~-------~~~~~~el~L~Di~ 43 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELF-------GKDQPVVLHLLDIP 43 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcc-------cCCCccEEEEEecC
Confidence 46789999998 99999999998854311 01122489999875
No 427
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=90.58 E-value=0.91 Score=41.72 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEcCCcEEEeeEEEEcCCCCCchhhhcc
Q 023375 68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSL 126 (283)
Q Consensus 68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~d~vi~a~G~~~~~~~~~~ 126 (283)
..+...+.+.+++.|++++.+ +|++++. +. |++. +.++.+|.||.|+|.....+....
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~ 264 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPL 264 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHh
Confidence 355666777788899999998 8988864 32 4444 457999999999998776555444
No 428
>PRK04148 hypothetical protein; Provisional
Probab=90.52 E-value=0.38 Score=37.12 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=28.8
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+.+++++||.| .|.++|..|++.+ .+|+.++.+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G--------------~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESG--------------FDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCC--------------CEEEEEECC
Confidence 34789999999 9999999999877 899999765
No 429
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.51 E-value=0.29 Score=43.66 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=30.3
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.++|.|||+|..|..+|..++..+ .+|++++..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG--------------~~V~l~D~~ 39 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG--------------LDVVAWDPA 39 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence 468999999999999999999887 999999876
No 430
>PLN02612 phytoene desaturase
Probab=90.42 E-value=0.95 Score=43.77 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce----EEEcCCcEEEeeEEEEcCCC
Q 023375 68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK----LILNDGTEVPYGLLVWSTGV 117 (283)
Q Consensus 68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~----v~~~~g~~i~~d~vi~a~G~ 117 (283)
..+.+.+.+.|++.|++|+++ +|++|+. ++ +.+.+|+++.+|.||.+++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 567788888888899999999 8999963 33 66678989999999999863
No 431
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.18 E-value=0.26 Score=47.37 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=26.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..|+|||+|.+|+-+|.++ +.+ .+|+|++..
T Consensus 8 ~DVlVVG~G~AGl~AAi~A-~~G--------------~~VilleK~ 38 (543)
T PRK06263 8 TDVLIIGSGGAGARAAIEA-ERG--------------KNVVIVSKG 38 (543)
T ss_pred cCEEEECccHHHHHHHHHH-hcC--------------CCEEEEEcc
Confidence 5799999999999999999 655 778887764
No 432
>PLN02976 amine oxidase
Probab=90.16 E-value=0.34 Score=51.14 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=28.9
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..+|+|||||++|+.+|..|...+ .+|+++|+.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G--------------~~V~VlEa~ 725 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQG--------------FSVTVLEAR 725 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCC--------------CcEEEEeec
Confidence 468999999999999999999876 788888864
No 433
>PRK08275 putative oxidoreductase; Provisional
Probab=90.10 E-value=0.44 Score=45.86 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=37.5
Q ss_pred CccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 134 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 134 g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
|.+.||..++| +.|++||+|||+.. + -.....|.-.|+.++.++...+.
T Consensus 357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~----~----~~~~~~~~~~G~~a~~~~~~~~~ 405 (554)
T PRK08275 357 SGVWVNEKAET-TVPGLYAAGDMASV----P----HNYMLGAFTYGWFAGENAAEYVA 405 (554)
T ss_pred CcEEECCCCcc-CCCCEEECcccCCc----h----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 56999999998 89999999998742 1 12334577889999988877654
No 434
>PLN02785 Protein HOTHEAD
Probab=89.97 E-value=0.32 Score=47.12 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.4
Q ss_pred cCeEEEEccCcHHHHHHHHHHH
Q 023375 14 LLHCVVVGGGPTGVEFSGELSD 35 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~ 35 (283)
.-.++|||||.+|+-+|..|++
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~ 76 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ 76 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc
Confidence 3689999999999999999997
No 435
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=89.93 E-value=0.92 Score=42.43 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=47.8
Q ss_pred eEEEEccCcHHHH-HHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 023375 16 HCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 93 (283)
Q Consensus 16 ~vvVvGgG~~Gve-~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 93 (283)
++.+||-|-+|+. +|..|.+.+ .+|+..+.... + ..+.|++.||++..+ ....+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G--------------~~v~~~D~~~~-~---------~~~~l~~~gi~~~~g~~~~~~ 56 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG--------------YQVSGSDIAEN-A---------TTKRLEALGIPIYIGHSAENL 56 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC--------------CeEEEECCCcc-h---------HHHHHHHCcCEEeCCCCHHHC
Confidence 4789999999998 899998887 89999876531 1 123467789988754 21111
Q ss_pred eCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 94 DSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 94 ~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
-.+|+||.++|+.+.
T Consensus 57 ------------~~~d~vV~spgi~~~ 71 (448)
T TIGR01082 57 ------------DDADVVVVSAAIKDD 71 (448)
T ss_pred ------------CCCCEEEECCCCCCC
Confidence 026778888877764
No 436
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=89.70 E-value=0.44 Score=46.17 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=27.7
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.|+|||+|.+|+-+|.++++.+. +.+|+|+++.
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~------------g~~V~lleK~ 38 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANP------------NLKIALISKV 38 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCC------------CCcEEEEEcc
Confidence 69999999999999999987531 1689999875
No 437
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.60 E-value=1.3 Score=41.66 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=49.1
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
+.++|+|+|.|-+|..+|..|.+.+ .+|++.+...... . +. . +.|++ ++.+..+ .-
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g--------------~~v~~~d~~~~~~-~-~~----~-~~l~~-~~~~~~~~~~- 63 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHL--------------PAQALTLFCNAVE-A-RE----V-GALAD-AALLVETEAS- 63 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcC--------------CEEEEEcCCCccc-c-hH----H-HHHhh-cCEEEeCCCC-
Confidence 3578999999999999999999887 8999988653211 1 11 1 12444 4444332 10
Q ss_pred EEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 92 DVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 92 ~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
.+.+ -.+|+||.++|+.+.
T Consensus 64 ---~~~~-------~~~d~vV~SpgI~~~ 82 (468)
T PRK04690 64 ---AQRL-------AAFDVVVKSPGISPY 82 (468)
T ss_pred ---hHHc-------cCCCEEEECCCCCCC
Confidence 0001 138999999999876
No 438
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=89.56 E-value=0.43 Score=43.58 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=29.0
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
...|+|||||++|..+|++|...-.- ...+|.|++.+
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~----------~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPF----------QDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCcc----------chheeeEEecc
Confidence 56899999999999999999843211 23888898876
No 439
>PRK07411 hypothetical protein; Validated
Probab=89.54 E-value=0.63 Score=42.78 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=36.0
Q ss_pred CCCCCHH--HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 3 LAGISEE--EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 3 ~~~~~~~--~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|....+ ++-+..+|+|||.|-.|.++|..|+..+- .+++|++..
T Consensus 25 l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-------------g~l~lvD~D 71 (390)
T PRK07411 25 LPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-------------GRIGIVDFD 71 (390)
T ss_pred hhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEECCC
Confidence 4444433 55567899999999999999999999873 688998875
No 440
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.43 E-value=0.5 Score=43.08 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=33.0
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++-+..+|+|||.|..|.++|..|+..+- .++++++..
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~~Gv-------------g~i~ivD~D 74 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLASAGV-------------GTITLIDDD 74 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEeCC
Confidence 345566899999999999999999998873 589999875
No 441
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.31 E-value=1.3 Score=41.29 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=52.9
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 92 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~ 92 (283)
.++|+|+|-|-+|..+|..|.+.+ .+|++.+........ . ...+...+|++..+ .-.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--------------~~v~v~D~~~~~~~~-~------~~~~~~~~i~~~~g~~~~- 64 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--------------AEVTVSDDRPAPEGL-A------AQPLLLEGIEVELGSHDD- 64 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--------------CeEEEEcCCCCccch-h------hhhhhccCceeecCccch-
Confidence 689999999999999999999988 999999875322211 1 11234457777765 211
Q ss_pred EeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 93 VDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 93 v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
. ..-.+|.||..+|+.+.
T Consensus 65 --------~--~~~~~d~vV~SPGi~~~ 82 (448)
T COG0771 65 --------E--DLAEFDLVVKSPGIPPT 82 (448)
T ss_pred --------h--ccccCCEEEECCCCCCC
Confidence 0 12358999999999887
No 442
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.30 E-value=0.55 Score=41.70 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=28.5
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||.|..|.|+|..|+..+- .+++|++..
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-------------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-------------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-------------CeEEEEcCC
Confidence 58999999999999999998873 789999875
No 443
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=89.27 E-value=1.3 Score=41.89 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEcCCcEEEeeEEEEcCCC
Q 023375 68 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGV 117 (283)
Q Consensus 68 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~d~vi~a~G~ 117 (283)
..+.+.+.+.+++.|++++++ .|++|.. + +|++++|+++.+|.||.+++.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcH
Confidence 456777888888999999999 8988753 3 477788889999999999885
No 444
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.25 E-value=0.76 Score=33.99 Aligned_cols=73 Identities=23% Similarity=0.321 Sum_probs=46.1
Q ss_pred EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeCC
Q 023375 17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQ 96 (283)
Q Consensus 17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~ 96 (283)
|+|+|.|..|.++|..|.+.. .+|++++.++ + ..+.+++.|++++.+..++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--------------~~vvvid~d~-------~----~~~~~~~~~~~~i~gd~~~~--- 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--------------IDVVVIDRDP-------E----RVEELREEGVEVIYGDATDP--- 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--------------SEEEEEESSH-------H----HHHHHHHTTSEEEES-TTSH---
T ss_pred eEEEcCCHHHHHHHHHHHhCC--------------CEEEEEECCc-------H----HHHHHHhcccccccccchhh---
Confidence 689999999999999999843 6999997752 1 13456777888776621100
Q ss_pred eEEEcCCcEEEeeEEEEcCCCC
Q 023375 97 KLILNDGTEVPYGLLVWSTGVG 118 (283)
Q Consensus 97 ~v~~~~g~~i~~d~vi~a~G~~ 118 (283)
. .++.-.--.++.++.+++..
T Consensus 53 ~-~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 53 E-VLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp H-HHHHTTGGCESEEEEESSSH
T ss_pred h-HHhhcCccccCEEEEccCCH
Confidence 0 01111112488888888743
No 445
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.19 E-value=0.54 Score=42.61 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=33.0
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++-+..+|+|||.|-.|.++|..|+..+- .++++++..
T Consensus 23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-------------g~i~lvD~D 61 (355)
T PRK05597 23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGV-------------GHITIIDDD 61 (355)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence 445566899999999999999999998873 688999875
No 446
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=89.09 E-value=0.53 Score=48.11 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=37.2
Q ss_pred CccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhh
Q 023375 134 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 134 g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
|.|.||.+.+| +.|++||+|||+... -...-.|.-.|+.++.++...+.
T Consensus 362 GGi~vd~~~~T-~v~GLfAaGE~a~~~--------~nsl~~a~v~G~~Ag~~a~~~~~ 410 (897)
T PRK13800 362 SGVWVDEHART-TVPGLYAAGDLACVP--------HNYMIGAFVFGDLAGAHAAGTLA 410 (897)
T ss_pred ceEEecCCCcc-cCCCeEechhccCcc--------hhhhhhHHHhHHHHHHHHHHHHh
Confidence 46889999998 899999999997521 23334577888888888876653
No 447
>PLN02735 carbamoyl-phosphate synthase
Probab=89.03 E-value=1.1 Score=46.79 Aligned_cols=45 Identities=24% Similarity=0.424 Sum_probs=35.6
Q ss_pred CCCCCCHHHHcccCeEEEEccCcH-----------HHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 2 FLAGISEEEKSRLLHCVVVGGGPT-----------GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 2 ~~~~~~~~~~~~~~~vvVvGgG~~-----------Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
|-..+++.+|...++|+|+|+|+. |.+++..|.+.+ .+|++++.+
T Consensus 11 ~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G--------------~~Vi~vd~n 66 (1102)
T PLN02735 11 WSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEG--------------YEVVLINSN 66 (1102)
T ss_pred ccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcC--------------CEEEEEeCC
Confidence 344566667778899999999985 677888888877 888888865
No 448
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.99 E-value=0.42 Score=47.47 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=31.9
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+..++|.|||+|..|..+|..++..+ .+|++++.+
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G--------------~~V~l~d~~ 345 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKG--------------TPIVMKDIN 345 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence 46679999999999999999999887 999999986
No 449
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.95 E-value=0.82 Score=36.63 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=27.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 59 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~ 59 (283)
.+.+|+|+|+|.+|..+|..+..++ .+++.++.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG--------------a~v~~~d~ 51 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG--------------AEVVVPDE 51 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT---------------EEEEEES
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC--------------CEEEeccC
Confidence 4579999999999999999999987 89999865
No 450
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=88.78 E-value=0.8 Score=44.43 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=38.9
Q ss_pred CCccccCCCcccCCCCCEEEeccccccCcCCCCcCC-CcchHHHHHHHHHHHHHHHHHhh
Q 023375 133 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 133 ~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~-p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
.|.|.||.+.++ ..|++||+|||+... ..|...+ -.....|.-.|+++++++...+.
T Consensus 358 ~GGi~vd~~~~t-~i~GLyAaGe~~~~g-~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 358 MGGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred CCCEEECCCCcc-ccCCEEecccccccc-cCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 367889988998 899999999997421 1121111 12334577789999999887664
No 451
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=88.75 E-value=0.5 Score=45.82 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=27.2
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.|+|||||.+|+-+|.++++.++ +.+|+|+++.
T Consensus 5 DVlVIG~G~AGl~AAl~aa~~g~------------g~~V~lveK~ 37 (580)
T TIGR01176 5 DIAVIGAGGAGLRAAIAAAEANP------------HLDVALISKV 37 (580)
T ss_pred eEEEECccHHHHHHHHHHHHhCC------------CCcEEEEEcc
Confidence 69999999999999999987531 1688888875
No 452
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=88.73 E-value=0.63 Score=39.57 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=28.3
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||+|..|.|++..|+..+- .++++++..
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-------------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-------------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence 58999999999999999998773 688998875
No 453
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.69 E-value=0.61 Score=40.84 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=29.1
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++|.|||+|..|..+|..|+..+ .+|++++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--------------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--------------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--------------CcEEEEeCC
Confidence 57999999999999999999876 899999876
No 454
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.68 E-value=0.6 Score=41.35 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=29.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++|.|||+|..|..+|..|+..+ .+|+++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G--------------~~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG--------------HEVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC--------------CeeEEEeCC
Confidence 47999999999999999999877 899999876
No 455
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.66 E-value=0.32 Score=42.80 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=29.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-+|+|+|||..|.+.|.-..-++ .+|++++.+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg--------------A~Vtild~n 200 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG--------------ADVTILDLN 200 (371)
T ss_pred ccEEEECCccccchHHHHHhccC--------------CeeEEEecC
Confidence 48999999999999999998887 999999876
No 456
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=88.62 E-value=0.49 Score=49.68 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=29.9
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
....|||||+|.+|+-+|.+.++.+ .+|+++|+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~G--------------a~VivlEK~ 441 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCG--------------AQVILLEKE 441 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEcc
Confidence 3468999999999999999999877 899999875
No 457
>PRK12839 hypothetical protein; Provisional
Probab=88.61 E-value=0.51 Score=45.66 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=28.5
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
...|+|||+|.+|+.+|..+++.+ .+|++||+.
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g--------------~~v~~iek~ 40 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGG--------------AKVLVVEKA 40 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence 358999999999999999999876 788888764
No 458
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=88.59 E-value=0.62 Score=40.76 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=47.3
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 91 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 91 (283)
++++|+|||||..|+ +.++.+... -.+++++ .+++.+.+..++.|....-... . +++
T Consensus 76 ~pk~VLiiGgGdG~t--lRevlkh~~------------ve~i~~V-------EID~~Vi~~ar~~l~~~~~~~~-dpRv~ 133 (282)
T COG0421 76 NPKRVLIIGGGDGGT--LREVLKHLP------------VERITMV-------EIDPAVIELARKYLPEPSGGAD-DPRVE 133 (282)
T ss_pred CCCeEEEECCCccHH--HHHHHhcCC------------cceEEEE-------EcCHHHHHHHHHhccCcccccC-CCceE
Confidence 446999999999875 566665432 2788998 4566777777777655421111 3 443
Q ss_pred EEeCCeEEE-cCCcEEEeeEEEEcC
Q 023375 92 DVDSQKLIL-NDGTEVPYGLLVWST 115 (283)
Q Consensus 92 ~v~~~~v~~-~~g~~i~~d~vi~a~ 115 (283)
=+..|+..+ ++.+. .+|.||+-.
T Consensus 134 i~i~Dg~~~v~~~~~-~fDvIi~D~ 157 (282)
T COG0421 134 IIIDDGVEFLRDCEE-KFDVIIVDS 157 (282)
T ss_pred EEeccHHHHHHhCCC-cCCEEEEcC
Confidence 333333221 12222 688888754
No 459
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=88.58 E-value=0.57 Score=41.73 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=28.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..|+|||+|..|+-.|+||++.+ .+|.+++..
T Consensus 6 ~dvivvgaglaglvaa~elA~aG--------------~~V~ildQE 37 (552)
T COG3573 6 ADVIVVGAGLAGLVAAAELADAG--------------KRVLILDQE 37 (552)
T ss_pred ccEEEECccHHHHHHHHHHHhcC--------------ceEEEEccc
Confidence 47999999999999999999988 888888764
No 460
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=88.57 E-value=0.59 Score=41.54 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=27.2
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||||..|+.++..|.+.+ ++..||..+
T Consensus 3 fDv~IIGGGLAGltc~l~l~~~G--------------k~c~iv~~g 34 (421)
T COG3075 3 FDVAIIGGGLAGLTCGLALQQAG--------------KRCAIVNRG 34 (421)
T ss_pred ccEEEEcCcHHHHHHHHHHHhcC--------------CcEEEEeCC
Confidence 36999999999999999999988 667777654
No 461
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=88.57 E-value=0.52 Score=43.58 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=26.6
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++|||||.+|+-+|..+++.+ .+|.+++.+
T Consensus 2 Dv~IIGgG~aGl~~A~~l~~~g--------------~~v~lv~~~ 32 (419)
T TIGR03378 2 DVIIIGGGLAGLSCALRLAEAG--------------KKCAIIAAG 32 (419)
T ss_pred CEEEECchHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence 5899999999999999998765 678888764
No 462
>PRK07395 L-aspartate oxidase; Provisional
Probab=88.57 E-value=0.43 Score=45.98 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=26.3
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||+|.+|+-+|.+++. + .+|+||+..
T Consensus 10 ~DVlVVG~G~AGl~AAi~A~~-G--------------~~V~lieK~ 40 (553)
T PRK07395 10 FDVLVVGSGAAGLYAALCLPS-H--------------LRVGLITKD 40 (553)
T ss_pred CCEEEECccHHHHHHHHHhhc-C--------------CCEEEEEcc
Confidence 479999999999999999863 4 788888774
No 463
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=88.52 E-value=0.51 Score=48.22 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=27.9
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
-.|+|||||.+|+-+|.++++.+ .+|+|++..
T Consensus 14 ~DVlVVG~G~AGl~AAl~Aa~~G--------------~~V~lleK~ 45 (897)
T PRK13800 14 CDVLVIGGGTAGTMAALTAAEHG--------------ANVLLLEKA 45 (897)
T ss_pred cCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecc
Confidence 57999999999999999998766 788888764
No 464
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=88.50 E-value=0.57 Score=43.10 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++-+..+|+|||.|-.|.++|..|+..+- .+++|++..
T Consensus 37 q~~L~~~~VlviG~GGlGs~va~~La~~Gv-------------g~i~lvD~D 75 (392)
T PRK07878 37 QKRLKNARVLVIGAGGLGSPTLLYLAAAGV-------------GTLGIVEFD 75 (392)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCC
Confidence 345567899999999999999999998873 588898875
No 465
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=88.49 E-value=1.9 Score=36.17 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=48.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC-CCCCHHHHHHHHHHHHhCCCEEEeCce
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-SSFDDRLRHYATTQLSKSGVRLVRGIV 90 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l-~~~~~~~~~~~~~~l~~~gV~v~~~~V 90 (283)
+.++|+|.|-|..|..+|..|.+.+. ..|.+.+.+ .+. |.++. .+.++...+..++..... .
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~-------------~vV~vsD~~g~i~~~Gld~--~~l~~~~~~~~~~~~~~~-~ 85 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGG-------------KVLAVSDPDGYIYDPGITT--EELINYAVALGGSARVKV-Q 85 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-------------EEEEEEcCCCcEECCCCCH--HHHHHHHHhhCCccccCc-c
Confidence 45899999999999999999998861 345555554 332 34443 233333333334432211 1
Q ss_pred EEEeCCeEEEcCCcEEEeeEEEEcCCC
Q 023375 91 KDVDSQKLILNDGTEVPYGLLVWSTGV 117 (283)
Q Consensus 91 ~~v~~~~v~~~~g~~i~~d~vi~a~G~ 117 (283)
..++++.+. ..+||.++.|+..
T Consensus 86 ~~~~~~~l~-----~~~~DVlipaA~~ 107 (217)
T cd05211 86 DYFPGEAIL-----GLDVDIFAPCALG 107 (217)
T ss_pred cccCcccce-----eccccEEeecccc
Confidence 112222222 3579999998864
No 466
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=88.47 E-value=2.7 Score=36.83 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=49.6
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 92 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~ 92 (283)
..++++|+|+|-++-.++..|++.+. .+|+++.+.. +-.+.+.+.+.+.+..+.....
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~-------------~~i~V~NRt~-------~ra~~La~~~~~~~~~~~~~~~-- 182 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA-------------KRITVVNRTR-------ERAEELADLFGELGAAVEAAAL-- 182 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEeCCH-------HHHHHHHHHhhhcccccccccc--
Confidence 35789999999999999999998873 6899997642 2244455556665541111011
Q ss_pred EeCCeEEEcCCcEE-EeeEEEEcCCCC
Q 023375 93 VDSQKLILNDGTEV-PYGLLVWSTGVG 118 (283)
Q Consensus 93 v~~~~v~~~~g~~i-~~d~vi~a~G~~ 118 (283)
.+-+.. .+|.+|-||..-
T Consensus 183 --------~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 183 --------ADLEGLEEADLLINATPVG 201 (283)
T ss_pred --------cccccccccCEEEECCCCC
Confidence 111112 699999999653
No 467
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.45 E-value=0.73 Score=37.25 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=28.0
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||.|-.|.++|..|+..+- .++++++..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-------------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-------------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence 58999999999999999998872 469999876
No 468
>PRK08071 L-aspartate oxidase; Provisional
Probab=88.40 E-value=0.45 Score=45.32 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=26.5
Q ss_pred CeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
..|+|||+|.+|+-+|.++++ + .+|+|++..
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g--------------~~V~lveK~ 34 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-E--------------YNVIIITKK 34 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-C--------------CCEEEEecc
Confidence 479999999999999999875 4 788888764
No 469
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=88.38 E-value=0.64 Score=43.17 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=28.9
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||+|..|+|++..|+..+-. .++..++++++..
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~--------~g~~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVG--------TGESGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--------cCCCCeEEEECCC
Confidence 589999999999999999988720 0112589999875
No 470
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=88.29 E-value=0.51 Score=45.55 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=28.1
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.-.|||||+| .|+.+|.+.++.+ .+|.|||+.
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G--------------~~v~v~Ek~ 47 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELG--------------LSVLIVEKS 47 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCC--------------CcEEEEecC
Confidence 3589999999 8999999999877 899999875
No 471
>PRK06153 hypothetical protein; Provisional
Probab=88.28 E-value=0.69 Score=42.14 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=85.5
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC-----CC--------CCH--HHHHH
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----SS--------FDD--RLRHY 73 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l-----~~--------~~~--~~~~~ 73 (283)
+++-+.++|+|||.|-+|..++..|++.+- .+++|++...+. .. ++. .-.+.
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-------------geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVev 237 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKTPV-------------REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDY 237 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHcCC-------------CEEEEECCCEecccccccccccCCHhHcCCcchHHHH
Confidence 456677899999999999999999999873 689999875221 11 111 22334
Q ss_pred HHHHHHhCCCEEEeCceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCch-----hhhccCCCCCCCC-cccc-CCC----c
Q 023375 74 ATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-----LVKSLDLPKSPGG-RIGI-DEW----L 142 (283)
Q Consensus 74 ~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~~-----~~~~~~l~~~~~g-~i~V-d~~----l 142 (283)
+.+.+.+.+.++..- ...++++.+. .--.+|.||-|+...... ++...+++.=.-| .+.+ +.. +
T Consensus 238 aa~rl~~in~~I~~~-~~~I~~~n~~----~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~~~~g~l~G~~ 312 (393)
T PRK06153 238 FKSRYSNMRRGIVPH-PEYIDEDNVD----ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLELSNGSLGGIL 312 (393)
T ss_pred HHHHHHHhCCeEEEE-eecCCHHHHH----HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecceecCCCcCcEE
Confidence 555566555333210 1112222211 112489999999865542 2222333310001 0111 111 1
Q ss_pred c----cCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHhhh
Q 023375 143 R----VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 192 (283)
Q Consensus 143 ~----~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~~~ 192 (283)
| +++.++.. -+.+.+.++....-.....|.|...|-.|+-.+.++-+.
T Consensus 313 Rvt~~~p~~~~~~--~~~~s~~~~~~~~~Y~~niQiaelNalnA~lavikwKk~ 364 (393)
T PRK06153 313 RVTLSTPDKRDHV--DGRLPFSDDDDNDVYSSNIQIAELNALNAALAVIKWKKL 364 (393)
T ss_pred EEEEecCCccccc--cccCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1 11122211 233333322222234557888888888888777776553
No 472
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.26 E-value=0.51 Score=46.91 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=31.4
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+..++|.|||+|..|..+|..++..+ .+|++++.+
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G--------------~~V~l~d~~ 345 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASKG--------------VPVIMKDIN 345 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhCC--------------CeEEEEeCC
Confidence 34578999999999999999999887 999999886
No 473
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=88.20 E-value=4.7 Score=38.30 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHH-hCCCEEEeC-ceEEEeCC---e--EE---EcCCc--EEEeeEEEEcCCCCCchhhhccCCC
Q 023375 68 DRLRHYATTQLS-KSGVRLVRG-IVKDVDSQ---K--LI---LNDGT--EVPYGLLVWSTGVGPSTLVKSLDLP 129 (283)
Q Consensus 68 ~~~~~~~~~~l~-~~gV~v~~~-~V~~v~~~---~--v~---~~~g~--~i~~d~vi~a~G~~~~~~~~~~~l~ 129 (283)
..+.+.+.+.+. ..|++++++ +|++++.+ . +. +.+++ ++.+|.||+|+|.....+.+.+|++
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 355566666665 458999999 89888532 2 33 23342 6899999999999888888777764
No 474
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.14 E-value=0.56 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.6
Q ss_pred CeEEEEccCcHHHHHHHHHHHhh
Q 023375 15 LHCVVVGGGPTGVEFSGELSDFI 37 (283)
Q Consensus 15 ~~vvVvGgG~~Gve~A~~L~~~~ 37 (283)
-.|+|||||.+|+-+|.++++.+
T Consensus 6 ~DVlVVG~G~AGl~AA~~Aa~~G 28 (577)
T PRK06069 6 YDVVIVGSGLAGLRAAVAAAERS 28 (577)
T ss_pred cCEEEECccHHHHHHHHHHHHhC
Confidence 36999999999999999998764
No 475
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=88.09 E-value=0.53 Score=45.27 Aligned_cols=38 Identities=34% Similarity=0.473 Sum_probs=31.8
Q ss_pred HHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 10 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 10 ~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+....-.++|||||-+|+-+|..|++.- ..+|.|+|++
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~-------------~~~VLLLEaG 90 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENP-------------NWSVLLLEAG 90 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCC-------------CceEEEEecC
Confidence 3455678999999999999999999753 2789999986
No 476
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.93 E-value=1.1 Score=40.15 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=29.7
Q ss_pred ccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 13 RLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
++.+|.|||+ |..|..+|..|...+-. ......++.|++..
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~-------~~~~~~el~L~Di~ 42 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMF-------GPDQPVILQLLELP 42 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccc-------CCCCceEEEEEecC
Confidence 3579999998 99999999988754411 00122589999875
No 477
>PRK05442 malate dehydrogenase; Provisional
Probab=87.88 E-value=2 Score=38.51 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=30.0
Q ss_pred cccCeEEEEcc-CcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGg-G~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++.+|.|||+ |..|..+|..|...+-. . .....++.|++..
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~---~----~~~~~el~LiDi~ 44 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDML---G----KDQPVILQLLEIP 44 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhc---C----CCCccEEEEEecC
Confidence 45689999998 99999999988754310 0 0112489999874
No 478
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=87.61 E-value=1.8 Score=37.37 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=49.4
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCCCCCHHHHHHHHHHHHhCCCEEEe
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVR 87 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~ 87 (283)
++.....+|.|||+|..|+.+|..+...+-. .++.|++-. +.+.. ++ .+ | .+|-.|..
T Consensus 15 ~~~~~~~KItVVG~G~VGmAca~siL~k~La------------del~lvDv~~dklkG---E~----MD-L-qH~s~f~~ 73 (332)
T KOG1495|consen 15 EKEFKHNKITVVGVGQVGMACAISILLKGLA------------DELVLVDVNEDKLKG---EM----MD-L-QHGSAFLS 73 (332)
T ss_pred cccccCceEEEEccchHHHHHHHHHHHhhhh------------hceEEEecCcchhhh---hh----hh-h-cccccccc
Confidence 3334467999999999999999988755422 688888765 32221 11 11 0 12333433
Q ss_pred C-ceEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 88 G-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 88 ~-~V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
. +|..-.+-.+ +-..+.||+++|.++.
T Consensus 74 ~~~V~~~~Dy~~------sa~S~lvIiTAGarq~ 101 (332)
T KOG1495|consen 74 TPNVVASKDYSV------SANSKLVIITAGARQS 101 (332)
T ss_pred CCceEecCcccc------cCCCcEEEEecCCCCC
Confidence 3 3321111111 2347789999998877
No 479
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=87.57 E-value=0.76 Score=40.40 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=28.2
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||+|..|.|++..|+..+- .++++++..
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-------------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-------------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCC
Confidence 58999999999999999998873 688998875
No 480
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=87.53 E-value=0.63 Score=43.01 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=38.0
Q ss_pred ccccCCCcccCCCCCEEEeccccccCcCCCCcCCCcchHHHHHHHHHHHHHHHHHh
Q 023375 135 RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 190 (283)
Q Consensus 135 ~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~p~~~~~A~~qg~~~a~~i~~~~ 190 (283)
++.+|+.+.+ +.+++|++||+|-+ ..-...|...|-.+|+.|.+..
T Consensus 438 ri~~d~~~~t-~i~gLy~aGdGAG~---------argI~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 438 RIKVDEDLST-SIKGLYPAGDGAGL---------ARGIVSAAADGIKAAEGIARKY 483 (486)
T ss_pred eEeeccccee-eecceEEccccccc---------cchhHHHhhhhHHHHHHHHHHh
Confidence 6888988777 99999999999954 5556778899999999887653
No 481
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.46 E-value=0.83 Score=40.05 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.9
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|.|||+|..|.-+|..|++.+ .+|+++.+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g--------------~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG--------------HDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence 6999999999999999999876 899999763
No 482
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=87.37 E-value=1.1 Score=41.86 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.4
Q ss_pred ccCeEEEEcc-CcHHHHHHHHHHHh
Q 023375 13 RLLHCVVVGG-GPTGVEFSGELSDF 36 (283)
Q Consensus 13 ~~~~vvVvGg-G~~Gve~A~~L~~~ 36 (283)
++.+|.|||+ |..|..+|..|...
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc
Confidence 4679999999 99999999999864
No 483
>PRK00536 speE spermidine synthase; Provisional
Probab=87.33 E-value=1.1 Score=38.65 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=25.2
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.++++|+|||||..|. |.|+.+.. .+|+++|-.
T Consensus 71 ~~pk~VLIiGGGDGg~--~REvLkh~--------------~~v~mVeID 103 (262)
T PRK00536 71 KELKEVLIVDGFDLEL--AHQLFKYD--------------THVDFVQAD 103 (262)
T ss_pred CCCCeEEEEcCCchHH--HHHHHCcC--------------CeeEEEECC
Confidence 4678999999999884 67776542 489999643
No 484
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=87.33 E-value=0.64 Score=44.79 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=29.0
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
...|+|||||.+|+-+|.++++.+ .+|.|++..
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g--------------~~V~l~~K~ 38 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAG--------------LKVALLSKA 38 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcC--------------CcEEEEEcc
Confidence 358999999999999999999987 788888764
No 485
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.32 E-value=0.89 Score=39.87 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=29.5
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.++|.|||+|..|..+|..++..+ .+|++++.+
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G--------------~~V~l~d~~ 35 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTG--------------YDVTIVDVS 35 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcC--------------CeEEEEeCC
Confidence 368999999999999999999876 899999875
No 486
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.17 E-value=1.9 Score=36.49 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=30.4
Q ss_pred ccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCC
Q 023375 13 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 61 (283)
Q Consensus 13 ~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~ 61 (283)
+.++|+|+|+|-+|..+|..|.+.+-. ..+|+++++..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~-----------~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAK-----------PENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcC-----------cceEEEEeCCC
Confidence 346999999999999999999876510 13799999973
No 487
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=87.14 E-value=0.85 Score=40.18 Aligned_cols=32 Identities=22% Similarity=0.623 Sum_probs=28.5
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+|+|||+|-.|.++|..|+.++- .++++++.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-------------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-------------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCC
Confidence 58999999999999999999883 688998865
No 488
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=87.03 E-value=0.6 Score=46.55 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=31.6
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+..++|.|||+|..|..+|..++..+ .+|++++.+
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G--------------~~V~l~d~~ 367 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKG--------------LKTVLKDAT 367 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCC--------------CcEEEecCC
Confidence 45678999999999999999999877 999999886
No 489
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=87.02 E-value=0.35 Score=45.65 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=31.7
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 63 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l 63 (283)
...|+|||||.+|.-+|.-.+.++ .++.|+|.+++.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRG--------------LktaLVE~~DF~ 102 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRG--------------LKTALVEAGDFA 102 (680)
T ss_pred cccEEEECCCccCcceeehhhccc--------------ceeEEEeccccc
Confidence 368999999999999999988877 999999987664
No 490
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.00 E-value=0.96 Score=39.66 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=29.5
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.++|.|||+|..|..+|..|+..+ .+|++++.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G--------------~~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAG--------------YDVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence 368999999999999999999876 899999875
No 491
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=86.99 E-value=0.89 Score=39.79 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=29.7
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 59 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~ 59 (283)
..+|+|||+|.+|+..|.+|.+..... ..+..+|++++.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~-------~ip~~~vtv~~D 41 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSV-------LIPVAKVTVISD 41 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhc-------cCCcceEEEecC
Confidence 468999999999999999998865211 123488999865
No 492
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.86 E-value=0.84 Score=41.70 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=33.4
Q ss_pred HHHcccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 9 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 9 ~~~~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+++-+..+|+|||.|-.|.++|..|+..+- .++++++..
T Consensus 130 q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-------------g~i~lvD~d 168 (376)
T PRK08762 130 QRRLLEARVLLIGAGGLGSPAALYLAAAGV-------------GTLGIVDHD 168 (376)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence 455677899999999999999999998873 589999876
No 493
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=86.74 E-value=1.4 Score=34.08 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=27.4
Q ss_pred EEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCCC
Q 023375 17 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS 64 (283)
Q Consensus 17 vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l~ 64 (283)
++|+|+|+.+..+|..+...+ .+|++++.. +.+|
T Consensus 1 L~I~GaG~va~al~~la~~lg--------------~~v~v~d~r~e~~~ 35 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLG--------------FRVTVVDPRPERFP 35 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCT--------------EEEEEEES-CCC-T
T ss_pred CEEEeCcHHHHHHHHHHHhCC--------------CEEEEEcCCccccC
Confidence 589999999999999999887 999999986 4444
No 494
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=86.62 E-value=1.3 Score=35.63 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=28.7
Q ss_pred ccCeEEEEccCc-HHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 13 RLLHCVVVGGGP-TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 13 ~~~~vvVvGgG~-~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+.++++|||+|- .|..+|..|...+ .+|+++++.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g--------------~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRN--------------ATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC--------------CEEEEEECC
Confidence 458999999997 4888999998876 789999864
No 495
>PRK09077 L-aspartate oxidase; Provisional
Probab=86.55 E-value=0.74 Score=44.16 Aligned_cols=30 Identities=17% Similarity=0.504 Sum_probs=0.0
Q ss_pred eEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 16 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 16 ~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.|+|||+|.+|+-+|.++++. .+|+|+++.
T Consensus 10 DVlVVG~G~AGl~AA~~aa~~---------------~~VilveK~ 39 (536)
T PRK09077 10 DVLIIGSGAAGLSLALRLAEH---------------RRVAVLSKG 39 (536)
T ss_pred CEEEECchHHHHHHHHHHHHC---------------CCEEEEecc
No 496
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=86.49 E-value=0.6 Score=39.24 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=32.8
Q ss_pred cccCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC-CCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL 63 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~-~~l 63 (283)
...++|.|||+|..|.-+|.-.+..+ ..|.|++++ +.|
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg--------------~~V~l~d~~~~aL 47 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSG--------------LNVWLVDANEDAL 47 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcC--------------CceEEecCCHHHH
Confidence 45579999999999999999988877 999999987 544
No 497
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.37 E-value=1.2 Score=39.19 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=29.7
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
.++|.|||+|..|..+|..|+..+ .+|++++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G--------------~~V~~~d~~ 36 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAG--------------MDVWLLDSD 36 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcC--------------CeEEEEeCC
Confidence 368999999999999999999876 899999876
No 498
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.27 E-value=0.77 Score=45.63 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=30.7
Q ss_pred cccCeEEEEccCcHHHHHHHHHH-HhhhhHHHhhcCCCCCccEEEEEeCC
Q 023375 12 SRLLHCVVVGGGPTGVEFSGELS-DFIMRDVRQRYSHVKDYIHVTLIEAN 60 (283)
Q Consensus 12 ~~~~~vvVvGgG~~Gve~A~~L~-~~~~~~~~~~~~~~~~~~~V~li~~~ 60 (283)
+..++|.|||+|..|..+|..++ ..+ .+|++++.+
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~G--------------~~V~l~d~~ 342 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKAG--------------LPVRIKDIN 342 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHcC--------------CeEEEEeCC
Confidence 35679999999999999999998 556 999999886
No 499
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.98 E-value=1.7 Score=42.06 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=38.5
Q ss_pred CCccccCCCcccCCCCCEEEeccccccCcCCCCcCC-CcchHHHHHHHHHHHHHHHHHhh
Q 023375 133 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 191 (283)
Q Consensus 133 ~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~-p~~~~~A~~qg~~~a~~i~~~~~ 191 (283)
.|.+.||...++.+.|++||+|+|+... ..|...+ -.....|.-.|+.+++++...++
T Consensus 346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g-~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 346 MGGIDVDIDGRNPDIVGLFSAGEAACVS-VHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred cCCeEECCCCCcCCcCCeEecccccccC-CCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3678888888874599999999997410 1121111 11345677889999998877654
No 500
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.98 E-value=2.4 Score=39.62 Aligned_cols=72 Identities=22% Similarity=0.189 Sum_probs=47.6
Q ss_pred cCeEEEEccCcHHHHHHHHHHHhhhhHHHhhcCCCCCccEEEEEeCCCCCCCCCHHHHHHHHHHHHh--CCCEEEeC--c
Q 023375 14 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK--SGVRLVRG--I 89 (283)
Q Consensus 14 ~~~vvVvGgG~~Gve~A~~L~~~~~~~~~~~~~~~~~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~--~gV~v~~~--~ 89 (283)
.-.|+|+|-|-+|+.+|..|.+.+ .+|+..+..... + . .+.|++ .||++..+ .
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G--------------~~v~~~D~~~~~----~-~----~~~l~~~~~g~~~~~~~~~ 62 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQG--------------IPFAVMDSREQP----P-G----LDTLAREFPDVELRCGGFD 62 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCC--------------CeEEEEeCCCCc----h-h----HHHHHhhcCCcEEEeCCCC
Confidence 357999999999999999998887 899998865311 1 1 122555 38887653 1
Q ss_pred eEEEeCCeEEEcCCcEEEeeEEEEcCCCCCc
Q 023375 90 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 120 (283)
Q Consensus 90 V~~v~~~~v~~~~g~~i~~d~vi~a~G~~~~ 120 (283)
...+ -.+|.||.++|..+.
T Consensus 63 ~~~~------------~~~d~vV~sp~i~~~ 81 (448)
T PRK03803 63 CELL------------VQASEIIISPGLALD 81 (448)
T ss_pred hHHh------------cCCCEEEECCCCCCC
Confidence 1111 126777777777664
Done!