BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023376
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 198 PGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDC 257
P ++E++D L EI ++ + A + C IC + GD LPC H FH C
Sbjct: 15 PPASKESIDALP-EIL----VTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPC 69
Query: 258 LDPWVRSCGDCPYCR 272
+ W++ G CP CR
Sbjct: 70 VSIWLQKSGTCPVCR 84
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 223 EASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
E + L+C +C E + G+ + LPC H FH C+ PW+ CP CR+++
Sbjct: 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 224 ASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSCGDCPYCRRNIVV 277
A ++C++CL DG+E LP C H FH++C+D W+ S CP CR +VV
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
C+ICL +G+++ LPC H FH C+D W+ + CP CR +I
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 220 SEGEASKTSLD--CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
S G+ + +L C++CLE F DEL PCKH FH CL W+ CP C ++
Sbjct: 5 SSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 176 FSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICL 235
F ++ ++ + L+ +++++K +E L S + + L C IC
Sbjct: 14 FEAIIQAKNKELEQTKEEKEKMQAQKEEVL-------------SHMNDVLENELQCIICS 60
Query: 236 ESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
E F + + L C H F S C++ W++ +CP CR++I
Sbjct: 61 EYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 176 FSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICL 235
F ++ ++ + L+ +++++K +E L S + + L C IC
Sbjct: 25 FEAIIQAKNKELEQTKEEKEKMQAQKEEVL-------------SHMNDVLENELQCIICS 71
Query: 236 ESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
E F + + L C H F S C++ W++ +CP CR++I
Sbjct: 72 EYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 176 FSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICL 235
F ++ ++ + L+ +++++K +E L S + + L C IC
Sbjct: 14 FEAIIQAKNKELEQTKEEKEKMQAQKEEVL-------------SHMNDVLENELQCIICS 60
Query: 236 ESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
E F + + L C H F S C++ W++ +CP CR++I
Sbjct: 61 EYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 215 SFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCR 272
S+ + S+ +L C +C+ F L LPC H FH+ C+D W+++ CP CR
Sbjct: 11 SYRFNPNNHQSEQTL-CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 36.2 bits (82), Expect = 0.022, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCR 272
C ICLE ++ + LPC H F C+ W+R CP C+
Sbjct: 8 CPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.8 bits (81), Expect = 0.025, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 229 LDCSICLESFTD----GDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
+ C IC++ +++ G ++ C H F S CL +++ CP CR+ I
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 35.8 bits (81), Expect = 0.028, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 228 SLDCSICLESFTD----GDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
++ C IC++ +++ G ++ C H F S CL +++ CP CR+ I
Sbjct: 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 212 IFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCPY 270
I + I + + L C ICL+ + + C HRF +DC+ +RS +CP
Sbjct: 38 ITDGLEIVVSPRSLHSELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPT 95
Query: 271 CRRNIV 276
CR+ +V
Sbjct: 96 CRKKLV 101
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 230 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
+C IC+ DG + LPC H F C+D W +CP CR +
Sbjct: 17 ECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 34.3 bits (77), Expect = 0.082, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD----CPYCRRNIV 276
CS+C +S G L+C C +H DCLDP +++ CP C+ ++
Sbjct: 8 CSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.9 bits (76), Expect = 0.094, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 249 CKHRFHSDCLDPWVRSCGDCPYCRRNIVV 277
C H FH+ C+ WV+ CP C+++ VV
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 212 IFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCPY 270
I + I + + L C ICL+ + + C HRF +DC+ +RS +CP
Sbjct: 37 ITDGLEIVVSPRSLHSELMCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPT 94
Query: 271 CRRNIV 276
CR+ +V
Sbjct: 95 CRKKLV 100
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 215 SFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWV-RSCGDCPYCRR 273
S A+ + S + C IC+E E + LPC H C V ++ CP+CRR
Sbjct: 2 SMALPKDAIPSLSECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRR 58
Query: 274 NI 275
+
Sbjct: 59 RV 60
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 212 IFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCPY 270
I + I + + L C ICL+ + + C HRF +DC+ +RS +CP
Sbjct: 18 ITDGLEIVVSPRSLHSELMCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPT 75
Query: 271 CRRNIV 276
CR+ +V
Sbjct: 76 CRKKLV 81
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD-CPYCRRNI 275
C IC E+ D + PC H + CL W S G CP+CR I
Sbjct: 29 CKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 32.0 bits (71), Expect = 0.39, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD-CPYCRRNI 275
C IC E+ D + PC H + CL W S G CP+CR I
Sbjct: 27 CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 222 GEASKTSLDCSICLESFTD----GDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
G ++ C IC++ +++ G ++ C H F S CL +++ CP CR+ I
Sbjct: 1 GAMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 228 SLDCSICLESFTD----GDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
++ C IC++ +++ G ++ C H F S CL +++ CP CR+ I
Sbjct: 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 31.6 bits (70), Expect = 0.52, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD-CPYCRRNI 275
C IC E+ D + PC H + CL W S G CP+CR I
Sbjct: 30 CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 228 SLDCSICLESFTD----GDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
++ C IC++ +++ G ++ C H F S CL +++ CP CR+ I
Sbjct: 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 223 EASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD-CPYCRRNI 275
E T C IC E+ D D I PC H + CL W S G CP+CR I
Sbjct: 329 EMGSTFQLCKICAEN--DKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 223 EASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD-CPYCRRNI 275
E T C IC E+ D D I PC H + CL W S G CP+CR I
Sbjct: 329 EMGSTFQLCKICAEN--DKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 223 EASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD-CPYCRRNI 275
E T C IC E+ D D I PC H + CL W S G CP+CR I
Sbjct: 327 EMGSTFQLCKICAEN--DKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 223 EASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD-CPYCRRNI 275
E T C IC E+ D D I PC H + CL W S G CP+CR I
Sbjct: 333 EMGSTFQLCKICAEN--DKDVKI-EPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 223 EASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD-CPYCRRNI 275
E T C IC E+ D D I PC H + CL W S G CP+CR I
Sbjct: 327 EMGSTFQLCKICAEN--DKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 230 DCSICLESFTDGDELI-CLPCKHRFHSDCLDPWVRSCGDCPYC 271
+C ICLE + LPC H H C + ++ CP C
Sbjct: 7 NCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2O2C|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From T.
Brucei Containing Glucose-6-Phosphate In The Active Site
pdb|2O2C|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From T.
Brucei Containing Glucose-6-Phosphate In The Active Site
pdb|2O2C|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From T.
Brucei Containing Glucose-6-Phosphate In The Active Site
pdb|2O2D|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
pdb|2O2D|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
pdb|2O2D|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
Length = 613
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 138 GLSSNNQRGNIFG-DELRLVDAGDWAAETSAGWSAVSSP---------FSELMT 181
LS+NNQ+ FG DE + DW + WSA+ P F EL+T
Sbjct: 298 ALSTNNQKVKEFGIDEENMFQFWDWVGGRYSMWSAIGLPIMISIGYENFVELLT 351
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 223 EASKTSLDCSICLESFTDGDEL--ICLPCKHRFHSDCLDPWVRSCGD---CPYCRRNIVV 277
+A + L+C IC+ESFT+ ++L L C H CL+ + S + CP+C + +
Sbjct: 10 DALREVLECPICMESFTE-EQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68
Query: 278 NS 279
S
Sbjct: 69 TS 70
>pdb|3K1L|B Chain B, Crystal Structure Of Fancl
pdb|3K1L|A Chain A, Crystal Structure Of Fancl
Length = 381
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 223 EASKTSLDCSICLESFTDGDELICLPCKH-----RFHSDCLDPWVR-----------SCG 266
E L C+IC DG E+ + C + + H+ CL+ W + S G
Sbjct: 303 EEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFG 362
Query: 267 DCPYCRRNI 275
CP+C+ +
Sbjct: 363 QCPFCKAKL 371
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCP 269
+ +C ICL + E + PC HRF C+ +R G CP
Sbjct: 5 SKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCP 45
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCP 269
++ +C ICL + E + PC HRF C+ +R G CP
Sbjct: 23 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCP 64
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD----CPYCR 272
C +C + D ++C C FH CL P + D CP C+
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 28.5 bits (62), Expect = 4.5, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGD----CPYCRR 273
C +C + G+ ++C C +H CLDP + + CP+C +
Sbjct: 14 CEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 224 ASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVR 263
A K +C++C DG ELIC C FH CL P +R
Sbjct: 4 AQKNEDECAVC----RDGGELICCDGCPRAFHLACLSPPLR 40
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRS 264
CS+C +S G L+C C +H DCLDP +++
Sbjct: 12 CSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKT 42
>pdb|1WEV|A Chain A, Solution Structure Of Phd Domain In Protein Np_082203
Length = 88
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 224 ASKTSLDCSICLE-SFTDGDELI-CLPCKHRFHSDCLDPWV 262
A + L C +C + + G++L+ C C + +H DC P V
Sbjct: 12 AMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQV 52
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 27.3 bits (59), Expect = 9.9, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
Query: 223 EASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRR 273
+AS TS +C++ C H FH C+ W+++ CP R
Sbjct: 42 QASATSEECTVAWGV-----------CNHAFHFHCISRWLKTRQVCPLDNR 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,701,043
Number of Sequences: 62578
Number of extensions: 277972
Number of successful extensions: 523
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 68
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)