BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023376
(283 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 9/86 (10%)
Query: 196 KPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHS 255
+P GLT+E +D L F E +A KT CS+C+ +T+G++L LPC H +H
Sbjct: 542 QPRGLTKEQIDNLSTRNF------GENDALKT---CSVCITEYTEGNKLRKLPCSHEYHI 592
Query: 256 DCLDPWVRSCGDCPYCRRNIVVNSDK 281
C+D W+ CP CRR ++V S++
Sbjct: 593 HCIDRWLSENSTCPICRRAVLVASNR 618
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 200 LTQEALDCLHVEIFNSFAISS-EGE-------ASKTSLDCSICLESFTDGDELICLPCKH 251
L +AL+ + FNS + EG +S ++ DC+ICLE + DG+EL +PC H
Sbjct: 251 LAVQALEKMETRKFNSKSKGRREGSCGALDTLSSGSTSDCAICLEKYIDGEELRVIPCTH 310
Query: 252 RFHSDCLDPWVRSCGDCPYCRRNIV 276
RFH C+DPW+ CP+CR NI+
Sbjct: 311 RFHRKCVDPWLLQHHTCPHCRHNII 335
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 184 TERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDE 243
+ L+ ++ ++ K G C ++ +S +IS DC+ICLE + DG+E
Sbjct: 165 VQALEKMETRKFKAKGKVSREGSCGGLDTLSSSSIS----------DCAICLEKYIDGEE 214
Query: 244 LICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
L +PC HRFH C+DPW+ CP+CR NI+
Sbjct: 215 LRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNII 247
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 28/166 (16%)
Query: 120 LLERLRGVSLSENG-RSGRGLSSNNQRGNIFGDELRLV-DAGDWAAETSAGWSA--VSSP 175
+LER+ G SL++ G + G G N N+F + L + GD+A W A +
Sbjct: 305 ILERIFG-SLNQPGAQQGEGEPFN--PANMFSNIFNLSGNPGDYA------WGARGLDDI 355
Query: 176 FSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICL 235
S+LM Q P ++ + + V+ I EGE C+IC+
Sbjct: 356 ISQLMEQA--------QGHNAPAPAPEDVIAKMKVQKPPKELIDEEGE-------CTICM 400
Query: 236 ESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSDK 281
E F D++I LPCKH FH +C+ PW+R G C CR + NS +
Sbjct: 401 EMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQ 446
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 9/86 (10%)
Query: 196 KPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHS 255
+P GLT+E +D L + F E +A KT CS+C+ +T+G++L LPC H +H
Sbjct: 544 QPRGLTKEQIDNLAMRSF------GENDALKT---CSVCITEYTEGNKLRKLPCSHEYHV 594
Query: 256 DCLDPWVRSCGDCPYCRRNIVVNSDK 281
C+D W+ CP CRR ++ + ++
Sbjct: 595 HCIDRWLSENSTCPICRRAVLASGNR 620
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 196 KPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHS 255
+P GLT+E +D L F E +A KT CS+C+ +T+G++L LPC H +H
Sbjct: 559 QPRGLTKEQIDNLSTRNFG------ENDALKT---CSVCITEYTEGNKLRKLPCSHEYHV 609
Query: 256 DCLDPWVRSCGDCPYCRRNIVVNSDK 281
C+D W+ CP CRR ++V ++
Sbjct: 610 HCIDRWLSENSTCPICRRAVLVAGNR 635
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 9/86 (10%)
Query: 196 KPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHS 255
+P GLT+E +D L + F E +A KT CS+C+ +T+G++L LPC H +H
Sbjct: 520 QPRGLTKEQIDNLAMRSFG------ENDALKT---CSVCITEYTEGNKLRKLPCSHEYHV 570
Query: 256 DCLDPWVRSCGDCPYCRRNIVVNSDK 281
C+D W+ CP CRR ++ + ++
Sbjct: 571 HCIDRWLSENSTCPICRRAVLSSGNR 596
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 196 KPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHS 255
+P GLT+E +D L + E +A KT CS+C+ +T+G++L LPC H +H
Sbjct: 677 QPRGLTKEQIDNLSTRNYG------ENDALKT---CSVCITEYTEGNKLRKLPCSHEYHI 727
Query: 256 DCLDPWVRSCGDCPYCRRNIVV 277
C+D W+ CP CRR ++V
Sbjct: 728 HCIDRWLSENSTCPICRRAVLV 749
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
C+ICLE + DG+EL +PC HRFH C+DPW+ CP+CR NI+
Sbjct: 267 CAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNII 312
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
C+ICLE + DG+EL +PC HRFH C+DPW+ CP+CR NI+
Sbjct: 293 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
C+ICLE + DG+EL +PC HRFH C+DPW+ CP+CR NI+
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNII 311
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 199 GLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDC 257
GL Q A+D L V ++ + IS E DC++CL F+D D+L LP C H FH C
Sbjct: 180 GLDQTAIDALPVFLYGNVTISLE-----QPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHC 234
Query: 258 LDPWVRSCGDCPYCRRNI 275
+D W+ S CP CRR++
Sbjct: 235 IDTWLLSNSTCPLCRRSL 252
>sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp.
japonica GN=Os03g0188200 PE=2 SV=1
Length = 353
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 200 LTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCL 258
L +E ++ ++ + + A L+C++CL F D DEL LP C H FH DC+
Sbjct: 104 LDKEVVEAFPTAVYGD--VKARMAAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCI 161
Query: 259 DPWVRSCGDCPYCRRNI 275
DPW+ + CP CR N+
Sbjct: 162 DPWLAAAVTCPLCRANL 178
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 201 TQEALDCLHVEIFNSFAISSEG--EASKTSLDCSICLESFTDGDELICLP-CKHRFHSDC 257
T+ LD +E F +F S+ K +L+C +CL F D + L +P C H FH C
Sbjct: 86 TEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGC 145
Query: 258 LDPWVRSCGDCPYCRRNIVVNSDKSV 283
+D W+RS CP CR N+V +SV
Sbjct: 146 IDAWLRSQTTCPLCRANLVPVPGESV 171
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 178 ELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLES 237
E S T + QL Q GL Q +D L V ++ E + +K DC++CL
Sbjct: 97 EFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLY------KEIKGTKEPFDCAVCLCE 150
Query: 238 FTDGDELICLP-CKHRFHSDCLDPWVRSCGDCPYCR 272
F++ D+L LP C H FH DC+D W+ S CP CR
Sbjct: 151 FSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 204 ALDCLHVEIFNSFAISS--EGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDP 260
LD VE F FA SS E + L+C+ICL D + + LP C H FH DC+D
Sbjct: 95 GLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDT 154
Query: 261 WVRSCGDCPYCRRNIVVNSDK 281
W+ S CP CR N+ S+K
Sbjct: 155 WLYSHATCPVCRSNLTAKSNK 175
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 166 SAGWSAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHV----EIFNSFAISSE 221
SA S+ S+ F E+ TS + QL Q GL Q +D L V EI S
Sbjct: 74 SATASSRSNRFPEISTSDALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGG 133
Query: 222 GEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSCGDCPYCR 272
A++ DC++CL F++ D+L LP C H FH +C+D W++S CP CR
Sbjct: 134 NGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCR 185
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 161 WAAETSAGWSAVSS--PFSELMTSQTERLQLVQQKRKKPP----GLTQEALDCLHVEIFN 214
W E + + S P S ++ R + V + ++ P GL + L +HV +F
Sbjct: 51 WRVEQHFNLNLIQSDDPGSTVIGRNPRRRRFVFAQSQEDPLHNAGLDSKILQSIHVVVFK 110
Query: 215 SFAISSEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSCGDCPYCRR 273
K L+C++CL DGD+ LP C H FH DC+D W +S CP CR
Sbjct: 111 CTDF-------KDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRN 163
Query: 274 NI 275
+
Sbjct: 164 TV 165
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 223 EASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCR 272
+ ++ L CS+CLE T G+ + LPC H+FH+ C+DPW+R G CP C+
Sbjct: 203 KGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCK 252
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 197 PPGLTQEALDCLHVEIFNSFAISSEGEASKTSL----DCSICLESFTDGDELICLP-CKH 251
P GL + L + ++++ A + + KTS DC++CL F +GD + LP C H
Sbjct: 118 PYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFH 177
Query: 252 RFHSDCLDPWVRSCGDCPYCRRNIV 276
FH +C+D W+RS +CP CR I+
Sbjct: 178 AFHLECIDEWLRSHPNCPLCRTAIL 202
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Query: 188 QLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEA---SKTSLDCSICLESFTDGDEL 244
Q+V+ +R LT LD +E F +F + SE +A K ++C++CL F D + L
Sbjct: 95 QVVRIRR-----LTARGLDAEAIETFPTF-LYSEVKAVRIGKGGVECAVCLCEFEDDETL 148
Query: 245 -ICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278
+ PC H FH+DC+D W+ CP CR ++V+N
Sbjct: 149 RLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLN 183
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 199 GLTQEALDCLHVEIFNSFAISSE-GEASKTSLDCSICLESFTDGDELICLPCKHRFHSDC 257
GLT+E +D L + + SE G+ CS+C+ + G++L LPC H FH C
Sbjct: 587 GLTKEQIDNLSTRSYEQDGVDSELGKV------CSVCISDYVAGNKLRQLPCLHEFHIHC 640
Query: 258 LDPWVRSCGDCPYCRRNIV 276
+D W+ CP CRR ++
Sbjct: 641 IDRWLSENCTCPVCRRPVL 659
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 213 FNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCR 272
N +++E DC ICL S+ DG EL LPC H FHS C+ W++ CP C+
Sbjct: 289 INGLCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCK 348
Query: 273 RNIV 276
NI+
Sbjct: 349 YNIL 352
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 204 ALDCLHVEIFNSFAISSEG--EASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDP 260
LD +E F +F S+ K +L+CS+CL F D + L +P C H FH C+D
Sbjct: 115 GLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDA 174
Query: 261 WVRSCGDCPYCRRNIVVNSDKSV 283
W+RS CP CR +++ +S+
Sbjct: 175 WLRSHTTCPLCRADLIPVPGESI 197
>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2
Length = 377
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 219 SSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278
+++G + C++CL+ F + L LPCKH FH DC+DPW+ CP C+ N++ N
Sbjct: 313 AAQGLPDPGAETCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCKFNVLGN 372
>sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN=Rnf215 PE=2 SV=1
Length = 379
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278
C++CL+ F + L LPCKH FH DC+DPW+ CP C+ N++ N
Sbjct: 327 CAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCKFNVLGN 374
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWV-RSCGDCPYCRRNIV 276
C+ICLE + DGD+L LPC H +H C+DPW+ ++ CP C++ +V
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWV-RSCGDCPYCRRNIV 276
C+ICLE + DGD+L LPC H +H C+DPW+ ++ CP C++ +V
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 199 GLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCL 258
GLT+E +D L + +I SE CS+C+ + G++L LPC H FH C+
Sbjct: 605 GLTKEQIDNLSTRHYEHNSIDSE-----LGKICSVCISDYVTGNKLRQLPCMHEFHIHCI 659
Query: 259 DPWVRSCGDCPYCRRNIV 276
D W+ CP CR+ ++
Sbjct: 660 DRWLSENCTCPICRQPVL 677
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 198 PGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDC 257
P ++E ++ L V IF + G + +C IC E+ GD++ LPCKH FH C
Sbjct: 201 PPASKEVVEKLPVIIFTEELLKKFGAEA----ECCICKENLVIGDKMQELPCKHTFHPPC 256
Query: 258 LDPWVRSCGDCPYCRRNIVVNSDK 281
L PW+ CP CR + + K
Sbjct: 257 LKPWLDEHNSCPICRHELPTDDQK 280
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 222 GEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
G+ + DCS+CL F+DG+ L LP C H FH C+D W++S +CP CR NI
Sbjct: 148 GDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANIT 203
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 199 GLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDC 257
GL + A++ L + F++ + SK LDCS+CL F + L LP C+H FH C
Sbjct: 97 GLDKTAIESLPLFRFSAL------KGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGC 150
Query: 258 LDPWVRSCGDCPYCRRNIVVNSDKSV 283
+D W+ CP CR + + D SV
Sbjct: 151 IDQWLEQHATCPLCRDRVSMEEDSSV 176
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 199 GLTQEALDCLHVEIFNSFAISSEGEASKT--SLDCSICLESFTDGDELICLP-CKHRFHS 255
GL ++AL L F + A S+ G A++ S +C+ICL F DG+E+ LP C H FH
Sbjct: 69 GLKKKALQSLPRSTFTA-AESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHV 127
Query: 256 DCLDPWVRSCGDCPYCRRNI 275
+C+D W+ S CP CRR +
Sbjct: 128 ECIDKWLVSRSSCPSCRRIL 147
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
C++C+ES+ D + LPCKH FH C+DPW+ CP C+ NI+
Sbjct: 264 CAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMCKLNIL 309
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 221 EGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
EGE S T C+ICL DG+++ LPC H FH C+D W+ CP CR +I
Sbjct: 284 EGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
C++C+ES+ D + LPCKH FH C+DPW+ CP C+ NI+
Sbjct: 264 CAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMCKLNIL 309
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 199 GLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDC 257
GL ++A++ L F++ + K L+CS+CL F D + L LP C+H FH C
Sbjct: 98 GLDKKAIESLPFFRFSAL------KGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGC 151
Query: 258 LDPWVRSCGDCPYCRRNIVVNSDKSV 283
+D W+ CP CR + + D SV
Sbjct: 152 IDQWLEQHATCPLCRNRVNIEDDLSV 177
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 221 EGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
EGE S T C+ICL DG+++ LPC H FH C+D W+ CP CR +I
Sbjct: 285 EGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 339
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWV-RSCGDCPYCRRNIV 276
C+ICL+ + DGD+L LPC H +H C+DPW+ ++ CP C++ +V
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 222 GEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
G + ++ C+ICLE F++G EL + C H FH C+DPW+ CP C NIV
Sbjct: 263 GSSCSSTPVCAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNIV 317
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
C++C+ES+ D + LPCKH FH C+DPW+ CP C+ NI+
Sbjct: 264 CAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPMCKLNIL 309
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 204 ALDCLHVEIFNSFAIS--SEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDP 260
LD VE F +F S + K L+C+ICL F D + L LP C H FH C+D
Sbjct: 99 GLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDA 158
Query: 261 WVRSCGDCPYCRRNI 275
W+ + CP CR N+
Sbjct: 159 WLEAHVTCPVCRANL 173
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWV-RSCGDCPYCRRNIV 276
C+ICL+ + DGD+L LPC H +H C+DPW+ ++ CP C++ +V
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWV-RSCGDCPYCRRNIV 276
C+ICL+ + DGD+L LPC H +H C+DPW+ ++ CP C++ +V
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWV-RSCGDCPYCRRNIV 276
C+ICL+ + DGD+L LPC H +H C+DPW+ ++ CP C++ +V
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 188 QLVQQ------KRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDG 241
QL+QQ R P ++ A+D L + SE C++C++ F DG
Sbjct: 173 QLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQ------CAVCMDEFEDG 226
Query: 242 DELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275
++ +PCKH FH DCL PW+ CP CR +
Sbjct: 227 SDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 199 GLTQEALDCLHVEIFNSF-AISSEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSD 256
GL + A+ + V F ++ E + SK S +CS+CL F + ++L +P C H FH D
Sbjct: 101 GLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHID 160
Query: 257 CLDPWVRSCGDCPYCRRNI 275
C+D W++ +CP CR ++
Sbjct: 161 CIDIWLQGNANCPLCRTSV 179
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 162 AAETSAGWSAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSE 221
A WS S E L LV + PP + ++ L + +S
Sbjct: 28 ARRVRGAWSWAPGGRSLFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVISS------ 81
Query: 222 GEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSD 280
+K L C +CL F + +I +PC H FHS+C+ PW+ CP CR + + D
Sbjct: 82 ---AKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDD 137
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 204 ALDCLHVEIFNSFAIS--SEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDP 260
LD +E F +F S + K +L+C+ICL F D + L LP C H FH C+
Sbjct: 95 GLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGA 154
Query: 261 WVRSCGDCPYCRRNI 275
W++ CP CR N+
Sbjct: 155 WLQGHVTCPVCRTNL 169
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 231 CSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276
C+IC+E++ D + LPCKH FH +C+DPW+ CP C+ +++
Sbjct: 303 CAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMCKLDVL 348
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,974,114
Number of Sequences: 539616
Number of extensions: 4499368
Number of successful extensions: 19086
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 17743
Number of HSP's gapped (non-prelim): 1110
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)