Query 023376
Match_columns 283
No_of_seqs 241 out of 1749
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:43:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 5.4E-17 1.9E-21 124.7 7.0 80 193-277 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 6.5E-16 2.2E-20 114.0 3.8 68 205-278 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 5.5E-15 1.9E-19 102.3 4.3 51 226-276 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.5 1.2E-14 4.1E-19 105.2 6.3 54 226-279 12-65 (69)
5 2ep4_A Ring finger protein 24; 99.5 1.2E-14 4E-19 106.7 6.2 54 226-279 13-66 (74)
6 2ect_A Ring finger protein 126 99.5 1.6E-14 5.5E-19 107.0 6.3 54 226-279 13-66 (78)
7 3ng2_A RNF4, snurf, ring finge 99.4 4.5E-14 1.5E-18 102.3 3.5 56 226-281 8-67 (71)
8 2ecm_A Ring finger and CHY zin 99.4 1.1E-13 3.7E-18 95.5 4.7 51 226-276 3-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.4 8.4E-14 2.9E-18 104.7 3.2 52 227-278 14-77 (81)
10 2ea6_A Ring finger protein 4; 99.4 1.7E-13 5.9E-18 98.4 3.9 52 226-277 13-68 (69)
11 1v87_A Deltex protein 2; ring- 99.4 2.7E-13 9.2E-18 107.4 4.7 52 227-278 24-95 (114)
12 3dpl_R Ring-box protein 1; ubi 99.4 2.4E-13 8.2E-18 107.7 4.2 53 226-278 35-102 (106)
13 2xeu_A Ring finger protein 4; 99.4 1.1E-13 3.7E-18 98.0 1.6 53 227-279 2-58 (64)
14 2ecn_A Ring finger protein 141 99.4 3.3E-13 1.1E-17 97.8 3.5 51 226-280 13-63 (70)
15 2ct2_A Tripartite motif protei 99.3 1.4E-12 4.6E-17 98.2 6.5 54 226-279 13-70 (88)
16 2djb_A Polycomb group ring fin 99.3 2E-12 6.7E-17 94.5 5.8 53 226-280 13-65 (72)
17 1chc_A Equine herpes virus-1 r 99.3 1.3E-12 4.4E-17 94.0 4.1 49 226-276 3-51 (68)
18 4a0k_B E3 ubiquitin-protein li 99.3 1.7E-13 5.7E-18 110.5 -0.7 71 206-279 29-114 (117)
19 2d8t_A Dactylidin, ring finger 99.3 1.2E-12 4.2E-17 95.3 3.6 49 226-277 13-61 (71)
20 2d8s_A Cellular modulator of i 99.3 3.9E-12 1.3E-16 95.8 5.1 53 226-279 13-72 (80)
21 2yur_A Retinoblastoma-binding 99.2 4.6E-12 1.6E-16 93.1 4.9 50 226-278 13-65 (74)
22 2ysl_A Tripartite motif-contai 99.2 4.6E-12 1.6E-16 92.2 4.6 51 226-279 18-71 (73)
23 2ecy_A TNF receptor-associated 99.2 6.2E-12 2.1E-16 90.2 5.2 51 226-279 13-64 (66)
24 2csy_A Zinc finger protein 183 99.2 5.7E-12 2E-16 93.9 4.4 48 226-276 13-60 (81)
25 4ayc_A E3 ubiquitin-protein li 99.2 4.9E-12 1.7E-16 103.9 2.9 47 228-277 53-99 (138)
26 2ecw_A Tripartite motif-contai 99.2 1.8E-11 6.2E-16 91.0 5.6 50 226-278 17-72 (85)
27 1t1h_A Gspef-atpub14, armadill 99.2 1.2E-11 4.2E-16 91.3 4.0 50 226-278 6-56 (78)
28 2ecv_A Tripartite motif-contai 99.2 3E-11 1E-15 89.8 6.1 51 226-279 17-73 (85)
29 4ap4_A E3 ubiquitin ligase RNF 99.2 7.7E-12 2.6E-16 100.3 2.7 54 226-279 5-62 (133)
30 3ztg_A E3 ubiquitin-protein li 99.2 2.3E-11 7.9E-16 92.5 4.6 49 225-276 10-61 (92)
31 3lrq_A E3 ubiquitin-protein li 99.1 9E-12 3.1E-16 96.9 2.3 50 227-278 21-71 (100)
32 2egp_A Tripartite motif-contai 99.1 7.7E-12 2.6E-16 92.3 1.6 50 226-278 10-66 (79)
33 2ysj_A Tripartite motif-contai 99.1 4.6E-11 1.6E-15 84.7 5.3 43 226-271 18-63 (63)
34 1g25_A CDK-activating kinase a 99.1 2.4E-11 8.1E-16 86.8 3.6 52 228-279 3-57 (65)
35 2y43_A E3 ubiquitin-protein li 99.1 2.4E-11 8.3E-16 93.9 3.1 49 227-277 21-69 (99)
36 2ckl_B Ubiquitin ligase protei 99.1 4.4E-11 1.5E-15 100.7 4.8 50 226-277 52-102 (165)
37 2ecj_A Tripartite motif-contai 99.1 7E-11 2.4E-15 82.0 4.9 43 226-271 13-58 (58)
38 3fl2_A E3 ubiquitin-protein li 99.1 1.1E-11 3.8E-16 99.7 0.9 48 227-277 51-99 (124)
39 2ckl_A Polycomb group ring fin 99.1 4.6E-11 1.6E-15 93.8 4.1 51 226-278 13-63 (108)
40 2ct0_A Non-SMC element 1 homol 99.1 9E-11 3.1E-15 87.1 4.6 52 226-279 13-66 (74)
41 1jm7_A BRCA1, breast cancer ty 99.1 8.5E-11 2.9E-15 92.2 4.3 49 228-279 21-72 (112)
42 4ap4_A E3 ubiquitin ligase RNF 99.1 4.4E-11 1.5E-15 95.9 2.7 54 226-279 70-127 (133)
43 2kre_A Ubiquitin conjugation f 99.0 1.9E-10 6.5E-15 89.9 4.5 50 226-278 27-76 (100)
44 1z6u_A NP95-like ring finger p 99.0 1.2E-10 4.1E-15 97.3 3.3 49 227-278 77-126 (150)
45 2kr4_A Ubiquitin conjugation f 99.0 2E-10 6.8E-15 87.0 3.9 50 226-278 12-61 (85)
46 3hct_A TNF receptor-associated 99.0 1E-10 3.6E-15 93.3 1.9 50 226-278 16-66 (118)
47 3l11_A E3 ubiquitin-protein li 99.0 5.5E-11 1.9E-15 94.3 0.3 48 226-276 13-61 (115)
48 1e4u_A Transcriptional repress 99.0 3.3E-10 1.1E-14 84.7 4.1 54 226-279 9-64 (78)
49 1wgm_A Ubiquitin conjugation f 99.0 3.6E-10 1.2E-14 88.0 4.5 50 226-278 20-70 (98)
50 1bor_A Transcription factor PM 99.0 2.2E-10 7.6E-15 79.9 2.9 49 226-280 4-52 (56)
51 1rmd_A RAG1; V(D)J recombinati 98.9 2.6E-10 9E-15 90.5 2.9 50 227-279 22-72 (116)
52 2vje_A E3 ubiquitin-protein li 98.9 3.4E-10 1.2E-14 81.2 3.2 50 226-276 6-56 (64)
53 3knv_A TNF receptor-associated 98.9 2.4E-10 8.1E-15 94.6 1.3 49 226-277 29-78 (141)
54 1jm7_B BARD1, BRCA1-associated 98.9 6.6E-10 2.3E-14 88.5 3.1 47 227-278 21-68 (117)
55 2vje_B MDM4 protein; proto-onc 98.9 7E-10 2.4E-14 79.3 2.5 49 227-276 6-55 (63)
56 2y1n_A E3 ubiquitin-protein li 98.9 7.4E-10 2.5E-14 105.6 3.4 49 227-278 331-380 (389)
57 2yu4_A E3 SUMO-protein ligase 98.8 1.4E-09 4.8E-14 83.7 2.4 46 226-274 5-59 (94)
58 2c2l_A CHIP, carboxy terminus 98.8 1.6E-09 5.4E-14 97.0 3.1 50 226-278 206-256 (281)
59 3k1l_B Fancl; UBC, ring, RWD, 98.8 2.1E-09 7.1E-14 100.7 2.9 53 226-278 306-374 (381)
60 4ic3_A E3 ubiquitin-protein li 98.7 2.3E-09 7.9E-14 78.8 1.9 43 228-277 24-67 (74)
61 3hcs_A TNF receptor-associated 98.7 3.7E-09 1.3E-13 89.2 1.9 50 226-278 16-66 (170)
62 1wim_A KIAA0161 protein; ring 98.6 1.7E-08 5.9E-13 77.2 3.2 49 226-274 3-61 (94)
63 2ecg_A Baculoviral IAP repeat- 98.6 2E-08 6.9E-13 73.8 3.0 44 228-278 25-69 (75)
64 2f42_A STIP1 homology and U-bo 98.6 1.6E-08 5.4E-13 87.0 2.9 50 226-278 104-154 (179)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.6 3.5E-08 1.2E-12 70.1 3.5 49 226-277 4-59 (60)
66 2ea5_A Cell growth regulator w 98.5 8.2E-08 2.8E-12 69.6 4.4 45 226-277 13-58 (68)
67 2yho_A E3 ubiquitin-protein li 98.5 3.6E-08 1.2E-12 73.5 1.4 42 228-276 18-60 (79)
68 2bay_A PRE-mRNA splicing facto 98.4 8.2E-08 2.8E-12 68.3 2.1 49 228-279 3-52 (61)
69 3t6p_A Baculoviral IAP repeat- 98.3 1E-07 3.5E-12 89.7 2.0 45 226-277 293-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.3 1.5E-07 5.2E-12 85.2 2.9 51 226-278 179-233 (267)
71 3vk6_A E3 ubiquitin-protein li 98.0 3.8E-06 1.3E-10 65.3 3.6 45 230-276 3-48 (101)
72 3nw0_A Non-structural maintena 97.8 1.7E-05 5.8E-10 70.9 4.8 51 227-279 179-231 (238)
73 2ko5_A Ring finger protein Z; 95.5 0.0048 1.6E-07 47.2 1.8 48 226-278 26-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.009 3.1E-07 45.4 3.0 35 228-262 3-38 (101)
75 2lri_C Autoimmune regulator; Z 93.0 0.084 2.9E-06 37.6 3.6 47 226-275 10-60 (66)
76 1wil_A KIAA1045 protein; ring 91.9 0.16 5.4E-06 38.1 4.0 32 226-261 13-47 (89)
77 2k16_A Transcription initiatio 89.3 0.14 4.9E-06 36.8 1.7 54 226-279 16-73 (75)
78 2l5u_A Chromodomain-helicase-D 86.7 0.5 1.7E-05 32.8 3.1 46 226-274 9-58 (61)
79 1mm2_A MI2-beta; PHD, zinc fin 85.9 0.29 1E-05 34.0 1.5 48 226-276 7-58 (61)
80 1f62_A Transcription factor WS 85.8 0.41 1.4E-05 31.7 2.2 44 230-273 2-49 (51)
81 2lv9_A Histone-lysine N-methyl 85.1 0.52 1.8E-05 35.9 2.7 47 226-273 26-75 (98)
82 2puy_A PHD finger protein 21A; 85.0 0.18 6.1E-06 34.9 0.0 49 227-278 4-56 (60)
83 1fp0_A KAP-1 corepressor; PHD 84.7 0.71 2.4E-05 34.7 3.2 48 226-276 23-74 (88)
84 1we9_A PHD finger family prote 84.1 0.34 1.2E-05 33.7 1.2 49 226-274 4-58 (64)
85 3m62_A Ubiquitin conjugation f 83.4 0.46 1.6E-05 49.9 2.3 50 226-278 889-939 (968)
86 2yql_A PHD finger protein 21A; 82.6 0.27 9.3E-06 33.5 0.2 45 226-273 7-55 (56)
87 1xwh_A Autoimmune regulator; P 81.8 0.47 1.6E-05 33.4 1.2 47 226-275 6-56 (66)
88 2ysm_A Myeloid/lymphoid or mix 81.3 0.76 2.6E-05 35.4 2.4 38 226-263 5-42 (111)
89 2l43_A N-teminal domain from h 80.0 0.52 1.8E-05 35.3 0.9 52 226-277 23-78 (88)
90 1wem_A Death associated transc 77.3 1.5 5.1E-05 31.5 2.7 47 228-275 16-71 (76)
91 2e6r_A Jumonji/ARID domain-con 76.4 0.64 2.2E-05 35.0 0.5 49 226-274 14-66 (92)
92 2cs3_A Protein C14ORF4, MY039 75.3 3.3 0.00011 30.7 4.0 38 226-264 13-52 (93)
93 1weu_A Inhibitor of growth fam 72.3 3.4 0.00012 31.1 3.6 46 226-275 34-86 (91)
94 2ku3_A Bromodomain-containing 71.0 1.3 4.5E-05 31.7 1.0 49 226-274 14-66 (71)
95 3shb_A E3 ubiquitin-protein li 70.4 0.98 3.3E-05 33.0 0.2 44 230-273 28-76 (77)
96 1wen_A Inhibitor of growth fam 70.0 4.2 0.00014 29.0 3.5 46 226-275 14-66 (71)
97 2yt5_A Metal-response element- 69.5 1 3.5E-05 31.3 0.2 50 226-275 4-62 (66)
98 3v43_A Histone acetyltransfera 68.3 2 6.7E-05 33.2 1.6 45 229-273 62-111 (112)
99 1wep_A PHF8; structural genomi 67.9 4.7 0.00016 29.0 3.5 48 227-275 11-64 (79)
100 1wev_A Riken cDNA 1110020M19; 67.7 0.81 2.8E-05 34.1 -0.7 51 227-277 15-75 (88)
101 3i2d_A E3 SUMO-protein ligase 67.1 3.9 0.00013 38.4 3.7 49 228-278 249-301 (371)
102 1wew_A DNA-binding family prot 66.5 3.1 0.00011 30.1 2.2 49 226-275 14-73 (78)
103 2e6s_A E3 ubiquitin-protein li 65.9 1.9 6.6E-05 31.3 1.1 45 229-273 27-76 (77)
104 2lbm_A Transcriptional regulat 65.9 6.2 0.00021 32.1 4.2 45 226-273 61-116 (142)
105 4fo9_A E3 SUMO-protein ligase 65.7 4.4 0.00015 38.0 3.6 49 228-278 215-267 (360)
106 3o70_A PHD finger protein 13; 65.6 2 6.8E-05 30.4 1.0 47 226-273 17-66 (68)
107 2kgg_A Histone demethylase jar 64.8 3.9 0.00013 27.1 2.3 43 230-272 4-52 (52)
108 2vpb_A Hpygo1, pygopus homolog 64.2 5.1 0.00018 28.0 3.0 34 226-259 6-41 (65)
109 1wee_A PHD finger family prote 64.0 2.2 7.6E-05 30.3 1.0 49 226-275 14-67 (72)
110 3v43_A Histone acetyltransfera 63.2 10 0.00035 29.1 4.8 34 227-260 4-43 (112)
111 3asl_A E3 ubiquitin-protein li 59.8 2.5 8.7E-05 30.0 0.7 44 230-273 20-68 (70)
112 2xb1_A Pygopus homolog 2, B-ce 59.2 6.5 0.00022 30.1 3.0 48 228-275 3-62 (105)
113 3ask_A E3 ubiquitin-protein li 58.4 2.9 0.0001 36.7 1.0 45 229-273 175-224 (226)
114 2kwj_A Zinc finger protein DPF 58.1 1.5 5.1E-05 34.1 -0.9 47 230-276 60-110 (114)
115 2d8v_A Zinc finger FYVE domain 57.9 8 0.00027 27.5 3.0 32 226-261 6-38 (67)
116 1y02_A CARP2, FYVE-ring finger 57.5 1.8 6.1E-05 34.3 -0.5 47 227-273 18-65 (120)
117 2rsd_A E3 SUMO-protein ligase 56.8 2 6.8E-05 30.3 -0.3 45 228-273 10-64 (68)
118 2ri7_A Nucleosome-remodeling f 55.1 3 0.0001 34.3 0.5 48 226-274 6-59 (174)
119 4gne_A Histone-lysine N-methyl 54.8 8.4 0.00029 29.7 3.0 45 226-275 13-63 (107)
120 2ysm_A Myeloid/lymphoid or mix 54.8 2.6 8.7E-05 32.3 -0.0 44 230-273 56-103 (111)
121 1z2q_A LM5-1; membrane protein 54.8 10 0.00036 27.6 3.4 36 226-261 19-55 (84)
122 2yw8_A RUN and FYVE domain-con 54.4 9.4 0.00032 27.7 3.0 36 226-261 17-53 (82)
123 1joc_A EEA1, early endosomal a 54.2 7.8 0.00027 30.5 2.8 34 228-261 69-103 (125)
124 3t7l_A Zinc finger FYVE domain 53.1 8.9 0.0003 28.4 2.8 36 227-262 19-55 (90)
125 1x4u_A Zinc finger, FYVE domai 52.9 11 0.00037 27.4 3.2 36 226-261 12-48 (84)
126 1wfk_A Zinc finger, FYVE domai 52.5 9.7 0.00033 28.1 2.9 50 226-275 7-64 (88)
127 3ql9_A Transcriptional regulat 50.6 16 0.00055 29.1 4.1 45 226-273 55-110 (129)
128 1wd2_A Ariadne-1 protein homol 50.5 3.2 0.00011 28.7 -0.1 37 228-264 6-47 (60)
129 3c6w_A P28ING5, inhibitor of g 49.7 3.4 0.00012 28.3 -0.0 43 227-273 8-57 (59)
130 1weo_A Cellulose synthase, cat 49.3 23 0.00079 26.6 4.5 50 227-276 15-69 (93)
131 1vfy_A Phosphatidylinositol-3- 48.5 13 0.00046 26.2 3.0 33 229-261 12-45 (73)
132 2vnf_A ING 4, P29ING4, inhibit 48.4 3.7 0.00013 28.2 -0.0 43 227-273 9-58 (60)
133 3fyb_A Protein of unknown func 48.1 6.6 0.00022 30.1 1.3 12 253-264 42-53 (104)
134 2o35_A Hypothetical protein DU 48.0 6.6 0.00023 30.1 1.3 12 253-264 43-54 (105)
135 1iml_A CRIP, cysteine rich int 46.8 10 0.00036 26.3 2.2 46 225-274 24-70 (76)
136 2cu8_A Cysteine-rich protein 2 46.8 15 0.00052 25.4 3.1 39 228-276 9-47 (76)
137 1dvp_A HRS, hepatocyte growth 46.6 10 0.00035 32.4 2.6 34 228-261 161-195 (220)
138 1z60_A TFIIH basal transcripti 44.9 9.9 0.00034 26.3 1.7 43 229-271 16-58 (59)
139 3zyq_A Hepatocyte growth facto 44.7 12 0.00041 32.3 2.7 48 228-275 164-220 (226)
140 2dj7_A Actin-binding LIM prote 44.3 21 0.00073 25.2 3.6 40 227-276 14-53 (80)
141 1zfo_A LAsp-1; LIM domain, zin 44.1 9.7 0.00033 22.5 1.4 28 229-258 4-31 (31)
142 3mjh_B Early endosome antigen 43.2 2.2 7.6E-05 26.3 -1.6 18 227-244 4-21 (34)
143 2kwj_A Zinc finger protein DPF 42.5 10 0.00035 29.2 1.7 33 229-261 2-41 (114)
144 1x64_A Alpha-actinin-2 associa 41.7 45 0.0015 23.7 5.1 39 227-276 24-62 (89)
145 1zbd_B Rabphilin-3A; G protein 41.0 15 0.00051 29.4 2.5 34 226-259 53-88 (134)
146 2co8_A NEDD9 interacting prote 39.3 27 0.00093 24.7 3.5 40 227-276 14-53 (82)
147 1loi_A Cyclic 3',5'-AMP specif 38.7 2.7 9.4E-05 23.7 -1.5 13 252-264 6-18 (26)
148 2g6q_A Inhibitor of growth pro 37.1 7.1 0.00024 27.0 -0.0 43 227-273 10-59 (62)
149 2jmi_A Protein YNG1, ING1 homo 36.8 9.9 0.00034 28.4 0.8 44 226-273 24-75 (90)
150 3o7a_A PHD finger protein 13 v 36.6 8.4 0.00029 25.4 0.3 42 232-273 7-51 (52)
151 3mpx_A FYVE, rhogef and PH dom 36.3 7.5 0.00026 36.2 0.0 49 227-275 374-430 (434)
152 1wyh_A SLIM 2, skeletal muscle 33.5 32 0.0011 23.2 3.0 28 229-257 6-33 (72)
153 1x62_A C-terminal LIM domain p 33.4 55 0.0019 22.7 4.3 38 227-275 14-51 (79)
154 3a1b_A DNA (cytosine-5)-methyl 33.3 26 0.0009 28.9 2.8 36 226-264 77-114 (159)
155 2gmg_A Hypothetical protein PF 33.0 8.2 0.00028 29.8 -0.3 24 248-276 72-95 (105)
156 2pv0_B DNA (cytosine-5)-methyl 32.8 31 0.0011 32.5 3.6 45 226-273 91-147 (386)
157 1a7i_A QCRP2 (LIM1); LIM domai 32.0 19 0.00065 25.2 1.6 38 229-276 8-45 (81)
158 2d8y_A Eplin protein; LIM doma 31.6 73 0.0025 22.7 4.9 27 229-257 16-42 (91)
159 2jmo_A Parkin; IBR, E3 ligase, 30.9 5.9 0.0002 28.7 -1.3 16 248-263 55-70 (80)
160 2cor_A Pinch protein; LIM doma 30.7 61 0.0021 22.6 4.2 38 228-276 15-52 (79)
161 1x63_A Skeletal muscle LIM-pro 29.5 45 0.0015 23.1 3.3 40 228-276 15-54 (82)
162 1g47_A Pinch protein; LIM doma 28.9 43 0.0015 22.8 3.1 41 227-276 10-50 (77)
163 1x61_A Thyroid receptor intera 28.8 43 0.0015 22.6 3.0 35 227-263 32-66 (72)
164 1x4k_A Skeletal muscle LIM-pro 28.6 36 0.0012 22.9 2.6 38 229-275 6-43 (72)
165 2fiy_A Protein FDHE homolog; F 28.2 6 0.00021 36.2 -2.1 48 226-274 180-231 (309)
166 1x4l_A Skeletal muscle LIM-pro 28.1 48 0.0016 22.4 3.1 38 229-275 6-45 (72)
167 2zet_C Melanophilin; complex, 27.3 31 0.0011 28.2 2.3 46 227-273 67-116 (153)
168 2l3k_A Rhombotin-2, linker, LI 27.2 33 0.0011 26.2 2.4 46 224-272 32-77 (123)
169 2d8z_A Four and A half LIM dom 26.3 45 0.0015 22.4 2.7 10 230-239 7-16 (70)
170 2pk7_A Uncharacterized protein 26.1 22 0.00074 25.2 1.0 11 266-276 9-19 (69)
171 2dar_A PDZ and LIM domain prot 25.6 51 0.0018 23.5 3.1 38 228-276 25-62 (90)
172 2l2l_B Methyl-CPG-binding doma 25.3 56 0.0019 20.3 2.6 17 112-128 18-34 (36)
173 2d8x_A Protein pinch; LIM doma 25.2 61 0.0021 21.7 3.3 10 230-239 7-16 (70)
174 3f6q_B LIM and senescent cell 25.2 48 0.0017 22.1 2.7 40 228-276 11-50 (72)
175 2l4z_A DNA endonuclease RBBP8, 24.7 36 0.0012 26.2 2.2 39 228-276 61-99 (123)
176 2ct7_A Ring finger protein 31; 24.4 23 0.00078 25.7 0.9 36 230-265 27-65 (86)
177 1nyp_A Pinch protein; LIM doma 23.9 36 0.0012 22.6 1.8 37 229-276 6-42 (66)
178 2xjy_A Rhombotin-2; oncoprotei 23.7 64 0.0022 24.5 3.5 50 226-276 27-77 (131)
179 1x68_A FHL5 protein; four-and- 23.6 49 0.0017 22.7 2.5 39 229-276 6-46 (76)
180 1v6g_A Actin binding LIM prote 23.0 52 0.0018 22.8 2.6 37 229-276 16-52 (81)
181 2cur_A Skeletal muscle LIM-pro 22.9 61 0.0021 21.6 2.9 10 230-239 7-16 (69)
182 3kqi_A GRC5, PHD finger protei 22.8 24 0.00081 25.0 0.7 46 229-274 10-61 (75)
183 2jny_A Uncharacterized BCR; st 22.2 20 0.00068 25.3 0.1 10 227-236 9-18 (67)
184 1wig_A KIAA1808 protein; LIM d 21.2 74 0.0025 21.7 3.1 34 226-260 29-62 (73)
185 1m3v_A FLIN4, fusion of the LI 20.8 56 0.0019 24.8 2.5 51 226-277 30-81 (122)
186 2jvx_A NF-kappa-B essential mo 20.5 29 0.001 20.3 0.6 11 266-276 4-14 (28)
187 2cuq_A Four and A half LIM dom 20.1 91 0.0031 21.3 3.4 36 229-275 16-51 (80)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=124.65 Aligned_cols=80 Identities=28% Similarity=0.612 Sum_probs=68.4
Q ss_pred cCCCCCCCCHHHHhhccceeeccccccccccCCCCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcc
Q 023376 193 KRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCR 272 (283)
Q Consensus 193 ~~~~~~~ls~~~i~~L~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR 272 (283)
......+++++.|+.|+...+...... ......|+||++.|..++.+..|||||.||..||..|+..+.+||+||
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~-----~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr 84 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGA-----VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSS-----SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTC
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccc-----cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcC
Confidence 345678899999999998887654322 245788999999999999888999999999999999999999999999
Q ss_pred cceec
Q 023376 273 RNIVV 277 (283)
Q Consensus 273 ~~l~~ 277 (283)
..+..
T Consensus 85 ~~~~~ 89 (91)
T 2l0b_A 85 CMFPP 89 (91)
T ss_dssp CBSSC
T ss_pred ccCCC
Confidence 98864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.5e-16 Score=113.97 Aligned_cols=68 Identities=29% Similarity=0.658 Sum_probs=55.7
Q ss_pred HhhccceeeccccccccccCCCCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecC
Q 023376 205 LDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 205 i~~L~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
++.|+...+..... ......|+||++.|..++.+..|||+|.||..||..|+..+.+||+||..+...
T Consensus 6 i~~lp~~~~~~~~~------~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNNH------QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSSC------SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCccc------cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45566665554321 245678999999999998888999999999999999999999999999988764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.52 E-value=5.5e-15 Score=102.27 Aligned_cols=51 Identities=41% Similarity=1.095 Sum_probs=46.7
Q ss_pred CCCCcCccccCccCCCCeeEEcC-CCCccChhhHHHHHhcCCCCCCccccee
Q 023376 226 KTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LP-CgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
++..+|+||++.|..++.+..++ |||.||..||.+|+..+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999988888888 9999999999999999999999999875
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=105.18 Aligned_cols=54 Identities=37% Similarity=0.910 Sum_probs=48.8
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 279 (283)
.....|+||++.|..+..+..++|||.||..||..|+..+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 557889999999988888888999999999999999999999999999987654
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=106.67 Aligned_cols=54 Identities=37% Similarity=0.799 Sum_probs=49.0
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 279 (283)
.....|+||++.|..+..+..|+|+|.||..||..|+..+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 557889999999999988889999999999999999999999999999986543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=1.6e-14 Score=106.99 Aligned_cols=54 Identities=33% Similarity=0.985 Sum_probs=49.2
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 279 (283)
.....|+||++.|..+..+..|+|+|.||..||..|+..+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 557899999999999888888999999999999999999999999999987654
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.43 E-value=4.5e-14 Score=102.34 Aligned_cols=56 Identities=25% Similarity=0.701 Sum_probs=48.0
Q ss_pred CCCCcCccccCccCCC----CeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecCCCC
Q 023376 226 KTSLDCSICLESFTDG----DELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSDK 281 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~----~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~ 281 (283)
.+...|+||++.|..+ ..+..++|||.||..||..|+..+..||+||..+...+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 5578899999998764 4556789999999999999999999999999998876544
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.42 E-value=1.1e-13 Score=95.52 Aligned_cols=51 Identities=29% Similarity=0.641 Sum_probs=44.1
Q ss_pred CCCCcCccccCccCCC-CeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 226 KTSLDCSICLESFTDG-DELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~-~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
.....|+||++.|..+ ..+..++|+|.||..||..|+.....||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3467899999999654 45677899999999999999999999999998764
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=8.4e-14 Score=104.65 Aligned_cols=52 Identities=33% Similarity=0.830 Sum_probs=42.3
Q ss_pred CCCcCccccCccCC-----------CCeeEEcC-CCCccChhhHHHHHhcCCCCCCcccceecC
Q 023376 227 TSLDCSICLESFTD-----------GDELICLP-CKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 227 ~~~~C~ICle~~~~-----------~~~l~~LP-CgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
+...|+||++.|.. ++.++.++ |+|.||..||.+||..+++||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45678888888854 34455555 999999999999999999999999988654
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.7e-13 Score=98.41 Aligned_cols=52 Identities=27% Similarity=0.765 Sum_probs=44.9
Q ss_pred CCCCcCccccCccCCC----CeeEEcCCCCccChhhHHHHHhcCCCCCCcccceec
Q 023376 226 KTSLDCSICLESFTDG----DELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVV 277 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~----~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 277 (283)
.....|+||++.|..+ ..+..++|||.||..||..|+..+..||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 5678899999998754 344678999999999999999999999999998753
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.37 E-value=2.7e-13 Score=107.37 Aligned_cols=52 Identities=27% Similarity=0.476 Sum_probs=42.3
Q ss_pred CCCcCccccCccCCCC---------------eeEEcCCCCccChhhHHHHHh-----cCCCCCCcccceecC
Q 023376 227 TSLDCSICLESFTDGD---------------ELICLPCKHRFHSDCLDPWVR-----SCGDCPYCRRNIVVN 278 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~---------------~l~~LPCgH~FH~~CI~~WL~-----~~~tCPlCR~~l~~~ 278 (283)
.+..|+||++.|..+. .+..++|+|+||..||..||. .+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999997653 344679999999999999994 467899999987654
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.37 E-value=2.4e-13 Score=107.71 Aligned_cols=53 Identities=25% Similarity=0.555 Sum_probs=44.8
Q ss_pred CCCCcCccccCccCCCC---------------eeEEcCCCCccChhhHHHHHhcCCCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGD---------------ELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~---------------~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
.....|+||++.|.... .+..++|+|.||..||.+||..+.+||+||+++...
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 35678999999998651 356779999999999999999999999999986543
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.36 E-value=1.1e-13 Score=98.04 Aligned_cols=53 Identities=26% Similarity=0.746 Sum_probs=45.4
Q ss_pred CCCcCccccCccCCC----CeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecCC
Q 023376 227 TSLDCSICLESFTDG----DELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNS 279 (283)
Q Consensus 227 ~~~~C~ICle~~~~~----~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 279 (283)
+...|+||++.+..+ ..+..++|||.||..||..|+..+..||+||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 357899999998754 44567799999999999999999999999999987654
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.3e-13 Score=97.84 Aligned_cols=51 Identities=31% Similarity=0.905 Sum_probs=44.8
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecCCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSD 280 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 280 (283)
.....|+||++.+.. ..+||||.||..||..|+.....||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 557899999999876 567999999999999999999999999999876543
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=98.18 Aligned_cols=54 Identities=33% Similarity=0.758 Sum_probs=46.2
Q ss_pred CCCCcCccccCccCCCCe-eEEcCCCCccChhhHHHHHhcC---CCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDE-LICLPCKHRFHSDCLDPWVRSC---GDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~-l~~LPCgH~FH~~CI~~WL~~~---~tCPlCR~~l~~~~ 279 (283)
.+...|+||++.|...+. .+.++|||.||..||..|+... ..||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 557889999999987653 5677999999999999999986 78999999887654
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2e-12 Score=94.50 Aligned_cols=53 Identities=23% Similarity=0.472 Sum_probs=44.8
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecCCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSD 280 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 280 (283)
.....|+||++.+..+ +..++|||.||..||..|+.....||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 5578899999998874 2234899999999999999999999999999876543
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=1.3e-12 Score=94.00 Aligned_cols=49 Identities=33% Similarity=0.826 Sum_probs=42.5
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
.....|+||++.+..+ ...+||||.||..||..|+..+..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3467899999998754 356799999999999999999999999999875
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.30 E-value=1.7e-13 Score=110.51 Aligned_cols=71 Identities=23% Similarity=0.470 Sum_probs=8.1
Q ss_pred hhccceeeccccccccccCCCCCCcCccccCccCCCC---------------eeEEcCCCCccChhhHHHHHhcCCCCCC
Q 023376 206 DCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGD---------------ELICLPCKHRFHSDCLDPWVRSCGDCPY 270 (283)
Q Consensus 206 ~~L~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~---------------~l~~LPCgH~FH~~CI~~WL~~~~tCPl 270 (283)
..+..+++....... +......|+||++.|..+. .+..++|+|.||..||.+||..+.+||+
T Consensus 29 ~r~~ikkw~ava~w~---wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~ 105 (117)
T 4a0k_B 29 KRFEVKKWNAVALWA---WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105 (117)
T ss_dssp CSEEEEEEEEEEEEE---ECCCC---------------------------------------------------------
T ss_pred CceEEEEEEEEEEEe---ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCC
Confidence 444444444433332 1234678999999997532 2334589999999999999999999999
Q ss_pred cccceecCC
Q 023376 271 CRRNIVVNS 279 (283)
Q Consensus 271 CR~~l~~~~ 279 (283)
||.++...+
T Consensus 106 Cr~~~~~~k 114 (117)
T 4a0k_B 106 DNREWEFQK 114 (117)
T ss_dssp ---------
T ss_pred CCCeeeeec
Confidence 999875543
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=95.31 Aligned_cols=49 Identities=33% Similarity=0.664 Sum_probs=42.9
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceec
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVV 277 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 277 (283)
.....|+||++.+..+ +.++|||.||..||..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4568899999998765 455999999999999999999999999998754
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.9e-12 Score=95.78 Aligned_cols=53 Identities=28% Similarity=0.709 Sum_probs=45.2
Q ss_pred CCCCcCccccCccCCCCeeEEcCCC-----CccChhhHHHHHhcCC--CCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCK-----HRFHSDCLDPWVRSCG--DCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCg-----H~FH~~CI~~WL~~~~--tCPlCR~~l~~~~ 279 (283)
.....|.||+++|..++.+ ++||. |.||..||.+||..++ +||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4567899999999877766 58996 9999999999998864 8999999987654
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=4.6e-12 Score=93.15 Aligned_cols=50 Identities=28% Similarity=0.666 Sum_probs=42.2
Q ss_pred CCCCcCccccCccCCCCeeEEcC-CCCccChhhHHHHHhcC--CCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSC--GDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LP-CgH~FH~~CI~~WL~~~--~tCPlCR~~l~~~ 278 (283)
.....|+||++.|..+. .++ |||.||..||..|+... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 55789999999998764 369 99999999999999876 6899999976543
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.6e-12 Score=92.20 Aligned_cols=51 Identities=24% Similarity=0.660 Sum_probs=43.0
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHh---cCCCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVR---SCGDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~---~~~tCPlCR~~l~~~~ 279 (283)
.....|+||++.+..+ ..++|||.||..||..|+. ....||+||..+..++
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 5678999999998864 3459999999999999997 4568999999987664
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.2e-12 Score=90.17 Aligned_cols=51 Identities=24% Similarity=0.612 Sum_probs=43.5
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHh-cCCCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVR-SCGDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~-~~~tCPlCR~~l~~~~ 279 (283)
.+...|+||++.+..+.. ++|||.||..||..|+. ....||+||..+..++
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCeeE---CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 557889999999987755 49999999999999995 5678999999987653
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.7e-12 Score=93.94 Aligned_cols=48 Identities=23% Similarity=0.592 Sum_probs=42.3
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
.....|+||++.|..+ +.++|||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4568899999999764 34699999999999999999999999999875
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.19 E-value=4.9e-12 Score=103.89 Aligned_cols=47 Identities=38% Similarity=0.976 Sum_probs=41.5
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceec
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVV 277 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 277 (283)
...|+||++.|..+ +.+||||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 46799999999865 356999999999999999999999999998753
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=1.8e-11 Score=90.97 Aligned_cols=50 Identities=32% Similarity=0.700 Sum_probs=43.4
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc------CCCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS------CGDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~------~~tCPlCR~~l~~~ 278 (283)
.....|+||++.|..+. .++|||.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSCE---ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcce---eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 55789999999998764 4699999999999999988 67899999988754
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.18 E-value=1.2e-11 Score=91.25 Aligned_cols=50 Identities=16% Similarity=0.456 Sum_probs=43.2
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc-CCCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS-CGDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~~ 278 (283)
.....|+||++.|..+. .++|||.||..||..|+.. ..+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~Pv---~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV---IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSEE---EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCCE---EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 45789999999998764 3599999999999999987 77899999988654
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=3e-11 Score=89.78 Aligned_cols=51 Identities=33% Similarity=0.683 Sum_probs=43.8
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc------CCCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS------CGDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~------~~tCPlCR~~l~~~~ 279 (283)
.....|+||++.+..+.. ++|||.||..||..|+.. ...||+||..+...+
T Consensus 17 ~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLS---LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSSCBC---CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCCcee---CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 557899999999987644 499999999999999987 778999999887543
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.17 E-value=7.7e-12 Score=100.32 Aligned_cols=54 Identities=26% Similarity=0.741 Sum_probs=46.1
Q ss_pred CCCCcCccccCccCCC----CeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDG----DELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~----~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 279 (283)
.+...|+||++.|..+ ..++.++|||.||..||..|+..+.+||+||..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 4567899999999764 44567899999999999999999999999999886543
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.15 E-value=2.3e-11 Score=92.54 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=41.6
Q ss_pred CCCCCcCccccCccCCCCeeEEcC-CCCccChhhHHHHHhcC--CCCCCccccee
Q 023376 225 SKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSC--GDCPYCRRNIV 276 (283)
Q Consensus 225 ~~~~~~C~ICle~~~~~~~l~~LP-CgH~FH~~CI~~WL~~~--~tCPlCR~~l~ 276 (283)
..+...|+||++.|..+. .++ |||.||..||..|+... ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 356789999999998764 459 99999999999999764 58999999873
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.15 E-value=9e-12 Score=96.94 Aligned_cols=50 Identities=26% Similarity=0.771 Sum_probs=42.2
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcC-CCCCCcccceecC
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSC-GDCPYCRRNIVVN 278 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~-~tCPlCR~~l~~~ 278 (283)
+...|+||++.|..+ +..++|||.||..||..|+... ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 467899999999864 3226999999999999999988 6999999998654
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.14 E-value=7.7e-12 Score=92.26 Aligned_cols=50 Identities=26% Similarity=0.614 Sum_probs=43.0
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc-------CCCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS-------CGDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~-------~~tCPlCR~~l~~~ 278 (283)
.+...|+||++.|..+.. |+|||.||..||..|+.. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~p~~---l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLS---LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSCCC---CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCeeE---CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 567889999999987654 599999999999999987 56899999988654
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.6e-11 Score=84.72 Aligned_cols=43 Identities=26% Similarity=0.676 Sum_probs=37.0
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHh---cCCCCCCc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVR---SCGDCPYC 271 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~---~~~tCPlC 271 (283)
.+...|+||++.+..+. .++|||.||..||..|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCE---ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeE---EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 56789999999998763 459999999999999998 45689998
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.4e-11 Score=86.83 Aligned_cols=52 Identities=21% Similarity=0.573 Sum_probs=42.1
Q ss_pred CCcCccccC-ccCCCCe-eEEcCCCCccChhhHHHHHhc-CCCCCCcccceecCC
Q 023376 228 SLDCSICLE-SFTDGDE-LICLPCKHRFHSDCLDPWVRS-CGDCPYCRRNIVVNS 279 (283)
Q Consensus 228 ~~~C~ICle-~~~~~~~-l~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~~~ 279 (283)
...|+||++ .+..+.. ...++|||.||..||..|+.. ...||+||..+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 567999999 7777653 245699999999999999765 467999999987654
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.11 E-value=2.4e-11 Score=93.87 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=41.7
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceec
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVV 277 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 277 (283)
+...|+||++.|..+ +..++|||.||..||..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 356899999999864 2224899999999999999999999999998765
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.11 E-value=4.4e-11 Score=100.73 Aligned_cols=50 Identities=36% Similarity=0.850 Sum_probs=41.8
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc-CCCCCCcccceec
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS-CGDCPYCRRNIVV 277 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~ 277 (283)
.....|+||++.|..+ +..++|||.||..||..|+.. ...||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3457899999999864 334599999999999999997 7789999998853
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=7e-11 Score=81.96 Aligned_cols=43 Identities=30% Similarity=0.796 Sum_probs=36.7
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHh---cCCCCCCc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVR---SCGDCPYC 271 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~---~~~tCPlC 271 (283)
.....|+||++.+..+.. ++|||.||..||..|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVI---IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCC---CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEe---CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 567899999999988744 59999999999999954 56789998
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.10 E-value=1.1e-11 Score=99.67 Aligned_cols=48 Identities=29% Similarity=0.580 Sum_probs=41.2
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC-CCCCcccceec
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCPYCRRNIVV 277 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~-tCPlCR~~l~~ 277 (283)
....|+||++.|..+. .++|||.||..||..|+.... .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPI---TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcE---EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4578999999998653 459999999999999998654 89999999865
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.09 E-value=4.6e-11 Score=93.82 Aligned_cols=51 Identities=24% Similarity=0.615 Sum_probs=43.2
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
.....|+||++.|..+ +..++|||.||..||..|+.....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4467899999999764 33349999999999999999999999999988654
No 40
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=9e-11 Score=87.13 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=44.1
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcC--CCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSC--GDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~--~tCPlCR~~l~~~~ 279 (283)
+...+|+||.+.+..++... .|+|.||..||..||+.+ .+||+||.++....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 45689999999998765442 799999999999999987 88999999876544
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=8.5e-11 Score=92.20 Aligned_cols=49 Identities=31% Similarity=0.689 Sum_probs=41.7
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC---CCCCcccceecCC
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG---DCPYCRRNIVVNS 279 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~---tCPlCR~~l~~~~ 279 (283)
...|+||++.+..+.. ++|||.||..||..|+.... .||+||..+....
T Consensus 21 ~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEPVS---TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSCCB---CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCeEE---CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 5679999999987654 49999999999999998754 8999999887643
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=4.4e-11 Score=95.88 Aligned_cols=54 Identities=26% Similarity=0.741 Sum_probs=46.1
Q ss_pred CCCCcCccccCccCCC----CeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDG----DELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~----~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 279 (283)
.....|+||++.|..+ .....++|||.||..||.+|+...++||+||..+..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4578899999998753 34467799999999999999999999999999987654
No 43
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.01 E-value=1.9e-10 Score=89.89 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=44.6
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
...+.|+||++.|.++..+ +|||.|+..||..||..+.+||+|+.++...
T Consensus 27 p~~~~CpI~~~~m~dPV~~---~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRL---PSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSEEEE---TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCCeEC---CCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 5678999999999987554 9999999999999999889999999988654
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=97.27 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=42.0
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC-CCCCcccceecC
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCPYCRRNIVVN 278 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~-tCPlCR~~l~~~ 278 (283)
....|+||++.|..+.. ++|||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~---~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT---TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEE---CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEE---cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 35789999999987543 69999999999999999765 799999998765
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.00 E-value=2e-10 Score=87.00 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=44.2
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
...+.|+||++.|.++.. ++|||.|+..||..||..+.+||+|+..+...
T Consensus 12 p~~~~CpI~~~~m~dPV~---~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVR---LPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSEEE---CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCCeE---CCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 457899999999998754 49999999999999999999999999987653
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.98 E-value=1e-10 Score=93.33 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=42.8
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC-CCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~-tCPlCR~~l~~~ 278 (283)
.....|+||++.+..+ +.++|||.||..||..|+.... .||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4567899999999876 3469999999999999998865 899999988654
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.98 E-value=5.5e-11 Score=94.27 Aligned_cols=48 Identities=31% Similarity=0.803 Sum_probs=41.1
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc-CCCCCCccccee
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS-CGDCPYCRRNIV 276 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~ 276 (283)
.+...|+||++.|..+. .|+|||.||..||..|+.. ...||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCE---ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCcee---EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 34678999999998764 4599999999999999977 668999999875
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.97 E-value=3.3e-10 Score=84.72 Aligned_cols=54 Identities=20% Similarity=0.514 Sum_probs=41.4
Q ss_pred CCCCcCccccCccCCCCe-eEEcCCCCccChhhHHHHHhc-CCCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDE-LICLPCKHRFHSDCLDPWVRS-CGDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~-l~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~~~ 279 (283)
.+...|+||++.+...+. +..++|||.||..||..|+.. ...||+||..+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 567899999998865432 222349999999999999854 567999999886543
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.97 E-value=3.6e-10 Score=88.01 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCCCcCccccCccCCCCeeEEcCCC-CccChhhHHHHHhcCCCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCK-HRFHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCg-H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
...+.|+||++.|.++.. ++|| |.|+..||..||..+.+||+|+.++...
T Consensus 20 p~~~~CpI~~~~m~dPV~---~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVV---LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSEEE---CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCCeE---CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 457899999999998754 4999 9999999999999989999999988754
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=2.2e-10 Score=79.87 Aligned_cols=49 Identities=29% Similarity=0.564 Sum_probs=40.9
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceecCCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSD 280 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 280 (283)
.+...|+||++.|..+.. |||||.||..||..| ...||+||..+.....
T Consensus 4 ~~~~~C~IC~~~~~~p~~---l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKL---LPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCCSC---STTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCeEE---cCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 456789999999998744 599999999999885 6689999999876554
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.94 E-value=2.6e-10 Score=90.45 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=42.4
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc-CCCCCCcccceecCC
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS-CGDCPYCRRNIVVNS 279 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~~~~ 279 (283)
+...|+||++.+..+. .++|||.||..||..|+.. ...||+||..+...+
T Consensus 22 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADPV---ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCcE---EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 3578999999998653 3699999999999999987 678999999986543
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.94 E-value=3.4e-10 Score=81.24 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=40.7
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCc-cChhhHHHHHhcCCCCCCccccee
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHR-FHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
.+...|.||++.+.... +..+||||. ||..|+..|+..+..||+||..+.
T Consensus 6 ~~~~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGC-IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEE-EEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEE-EECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34668999999866531 223499999 899999999999999999999874
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.90 E-value=2.4e-10 Score=94.60 Aligned_cols=49 Identities=24% Similarity=0.467 Sum_probs=41.8
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC-CCCCcccceec
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCPYCRRNIVV 277 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~-tCPlCR~~l~~ 277 (283)
.....|+||++.+..+. .++|||.||..||..|+.... .||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv---~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPF---QAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcE---ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 55788999999998873 459999999999999998765 89999997643
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=6.6e-10 Score=88.50 Aligned_cols=47 Identities=30% Similarity=0.729 Sum_probs=40.0
Q ss_pred CCCcCccccCccCCCCeeEEc-CCCCccChhhHHHHHhcCCCCCCcccceecC
Q 023376 227 TSLDCSICLESFTDGDELICL-PCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~L-PCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
....|+||++.|..+. .+ +|||.||..||..|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~pv---~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREPV---CLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSCB---CCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCcc---EeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 3678999999998763 44 8999999999999998 7899999988543
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.86 E-value=7e-10 Score=79.33 Aligned_cols=49 Identities=24% Similarity=0.506 Sum_probs=40.4
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCc-cChhhHHHHHhcCCCCCCccccee
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHR-FHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
....|.||++...... +..+||||. ||..|+..|+.....||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeE-EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4568999999865432 334599998 999999999998889999999874
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.86 E-value=7.4e-10 Score=105.61 Aligned_cols=49 Identities=35% Similarity=0.711 Sum_probs=41.8
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHh-cCCCCCCcccceecC
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVR-SCGDCPYCRRNIVVN 278 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~-~~~tCPlCR~~l~~~ 278 (283)
....|+||++.+..+ +.+||||.||..||..|+. ....||+||..+...
T Consensus 331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 347899999998654 4569999999999999999 678999999987654
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.4e-09 Score=83.66 Aligned_cols=46 Identities=22% Similarity=0.526 Sum_probs=38.9
Q ss_pred CCCCcCccccCccCCCCeeEEcC-CCCccChhhHHHHHhcC------CCCCC--cccc
Q 023376 226 KTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSC------GDCPY--CRRN 274 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LP-CgH~FH~~CI~~WL~~~------~tCPl--CR~~ 274 (283)
...+.|+||++.|.++.. ++ |||+|+..||..||..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~---~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVK---NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEE---ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEE---cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 457889999999998644 46 99999999999999864 48999 9855
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=1.6e-09 Score=97.04 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=42.5
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC-CCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~-tCPlCR~~l~~~ 278 (283)
...+.|+||++.|.++.. +||||+||..||..||...+ +||+||.++...
T Consensus 206 ~~~~~c~i~~~~~~dPv~---~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCI---TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSSEEE---CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcCCeE---CCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 457899999999998754 49999999999999998744 599999988643
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.77 E-value=2.1e-09 Score=100.67 Aligned_cols=53 Identities=30% Similarity=0.866 Sum_probs=41.9
Q ss_pred CCCCcCccccCccCCCCee----E-EcCCCCccChhhHHHHHhcC-----------CCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDEL----I-CLPCKHRFHSDCLDPWVRSC-----------GDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l----~-~LPCgH~FH~~CI~~WL~~~-----------~tCPlCR~~l~~~ 278 (283)
....+|+||++.+..+..+ . ..+|+|.||..||.+||+.. +.||+||.+|...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 5678999999999873322 1 23699999999999999762 4699999998754
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.74 E-value=2.3e-09 Score=78.83 Aligned_cols=43 Identities=26% Similarity=0.644 Sum_probs=36.6
Q ss_pred CCcCccccCccCCCCeeEEcCCCCc-cChhhHHHHHhcCCCCCCcccceec
Q 023376 228 SLDCSICLESFTDGDELICLPCKHR-FHSDCLDPWVRSCGDCPYCRRNIVV 277 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~~ 277 (283)
...|+||++.+... +.+||||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 56799999987764 45699999 999999999 789999998753
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.70 E-value=3.7e-09 Score=89.22 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=42.5
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC-CCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG-DCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~-tCPlCR~~l~~~ 278 (283)
.+...|+||++.+..+ +.++|||.||..||..|+.... .||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4578999999999876 3469999999999999998754 899999988654
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.61 E-value=1.7e-08 Score=77.18 Aligned_cols=49 Identities=24% Similarity=0.568 Sum_probs=40.4
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcC--------CCCCC--cccc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSC--------GDCPY--CRRN 274 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~--------~tCPl--CR~~ 274 (283)
.....|+||++.+..++.+..++|||.||..||..++... ..||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3467899999999877666556899999999999999741 36999 9987
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2e-08 Score=73.79 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=35.6
Q ss_pred CCcCccccCccCCCCeeEEcCCCCc-cChhhHHHHHhcCCCCCCcccceecC
Q 023376 228 SLDCSICLESFTDGDELICLPCKHR-FHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
...|+||++.+.... .+||||. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~~~---~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAIV---FVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCBC---CSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCEE---EecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 456999999987653 4599999 99999965 47899999988653
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.59 E-value=1.6e-08 Score=86.99 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=42.4
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcC-CCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSC-GDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~-~tCPlCR~~l~~~ 278 (283)
...+.|+||++.|.++.. +||||+|+..||..||..+ .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~DPV~---~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREPCI---TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSEEE---CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCCeE---CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 457899999999998744 4999999999999999875 4699999987653
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.56 E-value=3.5e-08 Score=70.08 Aligned_cols=49 Identities=24% Similarity=0.531 Sum_probs=38.4
Q ss_pred CCCCcCccccCccCCCCeeEEcCCC--C---ccChhhHHHHHhc--CCCCCCcccceec
Q 023376 226 KTSLDCSICLESFTDGDELICLPCK--H---RFHSDCLDPWVRS--CGDCPYCRRNIVV 277 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCg--H---~FH~~CI~~WL~~--~~tCPlCR~~l~~ 277 (283)
.....|.||+++.. +.+ ++||. + .||..||.+|+.. +.+||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45678999999843 334 57955 4 9999999999975 5789999998754
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=8.2e-08 Score=69.61 Aligned_cols=45 Identities=29% Similarity=0.801 Sum_probs=36.8
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCc-cChhhHHHHHhcCCCCCCcccceec
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHR-FHSDCLDPWVRSCGDCPYCRRNIVV 277 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~~ 277 (283)
.+...|.||++.... ++.+||||. ||..|+.. ...||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 456889999998654 456799999 99999984 5789999998753
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.46 E-value=3.6e-08 Score=73.53 Aligned_cols=42 Identities=26% Similarity=0.683 Sum_probs=35.0
Q ss_pred CCcCccccCccCCCCeeEEcCCCCc-cChhhHHHHHhcCCCCCCccccee
Q 023376 228 SLDCSICLESFTDGDELICLPCKHR-FHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
...|+||++.+.. ...+||||. ||..|+..| ..||+||..+.
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 4579999998765 345699999 999999987 38999999864
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.40 E-value=8.2e-08 Score=68.30 Aligned_cols=49 Identities=14% Similarity=0.309 Sum_probs=41.8
Q ss_pred CCcCccccCccCCCCeeEEc-CCCCccChhhHHHHHhcCCCCCCcccceecCC
Q 023376 228 SLDCSICLESFTDGDELICL-PCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNS 279 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~L-PCgH~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 279 (283)
.+.|+||++.+.++ +.+ +|||+|...||.+||..+++||+++.++..++
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 46799999999975 345 79999999999999999889999999886554
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.35 E-value=1e-07 Score=89.68 Aligned_cols=45 Identities=24% Similarity=0.679 Sum_probs=37.9
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCc-cChhhHHHHHhcCCCCCCcccceec
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHR-FHSDCLDPWVRSCGDCPYCRRNIVV 277 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~-FH~~CI~~WL~~~~tCPlCR~~l~~ 277 (283)
.+...|+||++.+..+ +.+||||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3567899999998764 45599999 999999998 789999998753
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.5e-07 Score=85.18 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=42.1
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcC--CCCCC--cccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSC--GDCPY--CRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~--~tCPl--CR~~l~~~ 278 (283)
.....|+||++.|..+.. .+.|||.||..||..|+..+ ..||+ |+..+...
T Consensus 179 ~~el~CPIcl~~f~DPVt--s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLI--SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCSSEEE--ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcccCCee--eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 557899999999987743 34899999999999999865 46999 99977543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.98 E-value=3.8e-06 Score=65.26 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=36.2
Q ss_pred cCccccCccCCCCeeEEcCCCCccChhhHHHHHhc-CCCCCCccccee
Q 023376 230 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS-CGDCPYCRRNIV 276 (283)
Q Consensus 230 ~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~ 276 (283)
.|.+|--.+.. ..+.+||+|+||.+|+..|.++ .+.||.|+.+|.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 48888766553 4566799999999999999855 688999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.79 E-value=1.7e-05 Score=70.88 Aligned_cols=51 Identities=24% Similarity=0.528 Sum_probs=42.2
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC--CCCCcccceecCC
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG--DCPYCRRNIVVNS 279 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~--tCPlCR~~l~~~~ 279 (283)
....|.||.+.+..+.... .|+|.||..|+..|++.+. .||.|+...+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 4788999999999875552 3999999999999998754 8999999876553
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.52 E-value=0.0048 Score=47.22 Aligned_cols=48 Identities=21% Similarity=0.509 Sum_probs=38.6
Q ss_pred CCCCcCccccCccCCCCeeEEcCCC-CccChhhHHHHHhcCCCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCK-HRFHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCg-H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
-.-..|..|.-..+ .++ .|. |.+|..||.-.|.....||+|+.+|+..
T Consensus 26 ~G~~nCKsCWf~~k---~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK---GLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS---SEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cCcccChhhccccC---Cee--eecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 44678999986533 232 565 9999999999999999999999998765
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.38 E-value=0.009 Score=45.36 Aligned_cols=35 Identities=17% Similarity=0.551 Sum_probs=27.6
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccChhhHHH-HH
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHSDCLDP-WV 262 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~-WL 262 (283)
+..|.||++.+..+....-+.|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 467999998765544555579999999999998 54
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.98 E-value=0.084 Score=37.62 Aligned_cols=47 Identities=28% Similarity=0.591 Sum_probs=34.5
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC----CCCCcccce
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG----DCPYCRRNI 275 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~~l 275 (283)
.....|.||.+. ++.+.--.|...||..|+.+.|.... .||.|....
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999753 44454445999999999999887643 599997654
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.92 E-value=0.16 Score=38.09 Aligned_cols=32 Identities=28% Similarity=0.685 Sum_probs=23.3
Q ss_pred CCCCcCccccCccCCCCeeEEcC---CCCccChhhHHHH
Q 023376 226 KTSLDCSICLESFTDGDELICLP---CKHRFHSDCLDPW 261 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LP---CgH~FH~~CI~~W 261 (283)
..+..|.||- .|...+.. | |+-+||..||.+.
T Consensus 13 ~~D~~C~VC~-~~t~~~l~---pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLF---PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCS---SCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-ccccccee---ccccccccccHhhcccc
Confidence 4578899994 33333333 5 8899999999996
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.27 E-value=0.14 Score=36.83 Aligned_cols=54 Identities=19% Similarity=0.366 Sum_probs=36.3
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc----CCCCCCcccceecCC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS----CGDCPYCRRNIVVNS 279 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~----~~tCPlCR~~l~~~~ 279 (283)
.+...|.||.........+.--.|.-.||..|+..-+.. .-.||.|+..+....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~k 73 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSCC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhcc
Confidence 345679999877543234433349999999999765543 335999988775543
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=86.68 E-value=0.5 Score=32.79 Aligned_cols=46 Identities=28% Similarity=0.811 Sum_probs=32.8
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcC----CCCCCcccc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSC----GDCPYCRRN 274 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~----~tCPlCR~~ 274 (283)
.....|.||... ++.+.--.|.-.||..|+.+-+... -.||.|...
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999863 4444444588999999999865432 259999754
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.88 E-value=0.29 Score=34.00 Aligned_cols=48 Identities=27% Similarity=0.673 Sum_probs=33.0
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC----CCCCccccee
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG----DCPYCRRNIV 276 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~~l~ 276 (283)
.....|.||... ++.+.--.|.-.||..|+.+-|.... .||.|.....
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 456779999753 44443334889999999987655422 4999976543
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.79 E-value=0.41 Score=31.72 Aligned_cols=44 Identities=30% Similarity=0.766 Sum_probs=30.0
Q ss_pred cCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC----CCCCccc
Q 023376 230 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG----DCPYCRR 273 (283)
Q Consensus 230 ~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~ 273 (283)
.|.||...-..++.+.--.|.-.||..|+.+=|.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4889987644444454445999999999976554422 4999964
No 81
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=85.08 E-value=0.52 Score=35.89 Aligned_cols=47 Identities=26% Similarity=0.467 Sum_probs=32.3
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc---CCCCCCccc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS---CGDCPYCRR 273 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~---~~tCPlCR~ 273 (283)
.+...| ||-.....+..+.--.|.-.||..|+..=+.. .-.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 344567 89777666655554459999999999764332 236999964
No 82
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=85.01 E-value=0.18 Score=34.89 Aligned_cols=49 Identities=35% Similarity=0.816 Sum_probs=34.6
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC----CCCCcccceecC
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG----DCPYCRRNIVVN 278 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~~l~~~ 278 (283)
.+..|.||... ++.+.--.|.-.||..|+.+-|.... .||.|.......
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 46779999864 45554445999999999997655422 499997765543
No 83
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.65 E-value=0.71 Score=34.74 Aligned_cols=48 Identities=27% Similarity=0.672 Sum_probs=34.4
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC----CCCCccccee
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG----DCPYCRRNIV 276 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~~l~ 276 (283)
.....|.||... ++.+.--.|--.||..|+.+=|.... .||.|...-.
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 557789999864 44444345889999999988665532 4999976543
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.14 E-value=0.34 Score=33.68 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=33.7
Q ss_pred CCCCcCccccCccCCCC-eeEEcCCCCccChhhHHHHHh-----cCCCCCCcccc
Q 023376 226 KTSLDCSICLESFTDGD-ELICLPCKHRFHSDCLDPWVR-----SCGDCPYCRRN 274 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~-~l~~LPCgH~FH~~CI~~WL~-----~~~tCPlCR~~ 274 (283)
.+...|+||...+..+. .+.--.|...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45678999998875443 343335999999999864322 24569999653
No 85
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.41 E-value=0.46 Score=49.89 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=42.9
Q ss_pred CCCCcCccccCccCCCCeeEEcCCC-CccChhhHHHHHhcCCCCCCcccceecC
Q 023376 226 KTSLDCSICLESFTDGDELICLPCK-HRFHSDCLDPWVRSCGDCPYCRRNIVVN 278 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCg-H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 278 (283)
.+.+.|+|-++.|.++.. +|.| +.|-..+|..||..+.+||+=|.++...
T Consensus 889 P~~F~cPIs~~lM~DPVi---lpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVI---LPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSSEEE---CTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhCCeE---cCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 457899999999998754 4987 6899999999999999999999887643
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.58 E-value=0.27 Score=33.47 Aligned_cols=45 Identities=38% Similarity=0.850 Sum_probs=31.6
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC----CCCCccc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG----DCPYCRR 273 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~ 273 (283)
.....|.||... ++.+.--.|.-.||..|+.+-|.... .||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999874 44444445999999999987655422 4888853
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=81.80 E-value=0.47 Score=33.40 Aligned_cols=47 Identities=30% Similarity=0.769 Sum_probs=33.1
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC----CCCCcccce
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG----DCPYCRRNI 275 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~~l 275 (283)
..+..|.||... ++.+.--.|.-.||..|+.+-|.... .||.|...-
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 457789999864 44444335999999999987655422 499996643
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.29 E-value=0.76 Score=35.38 Aligned_cols=38 Identities=26% Similarity=0.621 Sum_probs=27.7
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHh
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVR 263 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~ 263 (283)
..+..|.||.+.-...+.+.--.|+..||..||...+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 56788999987633333344446999999999988765
No 89
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=79.99 E-value=0.52 Score=35.26 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=33.3
Q ss_pred CCCCcCccccCccCC-C-CeeEEcCCCCccChhhHHHHHhc--CCCCCCcccceec
Q 023376 226 KTSLDCSICLESFTD-G-DELICLPCKHRFHSDCLDPWVRS--CGDCPYCRRNIVV 277 (283)
Q Consensus 226 ~~~~~C~ICle~~~~-~-~~l~~LPCgH~FH~~CI~~WL~~--~~tCPlCR~~l~~ 277 (283)
.....|.||...-.. . ..+..-.|.-.||..|+.+-+.. .-.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 567889999875422 2 22322248899999999864322 2249999765443
No 90
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.29 E-value=1.5 Score=31.48 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=31.6
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccChhhHHHHH---------hcCCCCCCcccce
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWV---------RSCGDCPYCRRNI 275 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL---------~~~~tCPlCR~~l 275 (283)
...| ||...+..+..+.--.|.-.||..|+.--. .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4556 898876544445444599999999985321 2356799997643
No 91
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.38 E-value=0.64 Score=35.04 Aligned_cols=49 Identities=29% Similarity=0.568 Sum_probs=33.1
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC----CCCCcccc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG----DCPYCRRN 274 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~~ 274 (283)
.+...|.||...-.....+..-.|.-.||..|+.+=|.... .||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34567999987643333443335999999999986554422 49999764
No 92
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=75.34 E-value=3.3 Score=30.74 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=30.6
Q ss_pred CCCCcCccccCccCCCCeeEEcC--CCCccChhhHHHHHhc
Q 023376 226 KTSLDCSICLESFTDGDELICLP--CKHRFHSDCLDPWVRS 264 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LP--CgH~FH~~CI~~WL~~ 264 (283)
.....|.+|.+.++....+ +-| =.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 4567899999999887766 233 4699999999999876
No 93
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.30 E-value=3.4 Score=31.12 Aligned_cols=46 Identities=24% Similarity=0.608 Sum_probs=28.5
Q ss_pred CCCCcCccccCccCCCCeeEEcC--CC-CccChhhHHHHHhc----CCCCCCcccce
Q 023376 226 KTSLDCSICLESFTDGDELICLP--CK-HRFHSDCLDPWVRS----CGDCPYCRRNI 275 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LP--Cg-H~FH~~CI~~WL~~----~~tCPlCR~~l 275 (283)
.+...| ||..... +..+..=. |. ..||..||. |.. .-.||.|+...
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345567 9987643 44442223 55 689999997 333 33599997643
No 94
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.00 E-value=1.3 Score=31.72 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=31.7
Q ss_pred CCCCcCccccCcc--CCCCeeEEcCCCCccChhhHHHHHhcC--CCCCCcccc
Q 023376 226 KTSLDCSICLESF--TDGDELICLPCKHRFHSDCLDPWVRSC--GDCPYCRRN 274 (283)
Q Consensus 226 ~~~~~C~ICle~~--~~~~~l~~LPCgH~FH~~CI~~WL~~~--~tCPlCR~~ 274 (283)
.....|.||...- ..+..+.-=.|.-.||..|+..-..-. =.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4577899998764 223333333499999999997643222 248888653
No 95
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=70.45 E-value=0.98 Score=32.99 Aligned_cols=44 Identities=36% Similarity=0.785 Sum_probs=27.5
Q ss_pred cCccccCccCCCCeeEEcCCCCccChhhHHHHHhcC-----CCCCCccc
Q 023376 230 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSC-----GDCPYCRR 273 (283)
Q Consensus 230 ~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~-----~tCPlCR~ 273 (283)
.|.||...-..+..+.--.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 456665543333333323488999999999866542 35999875
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.96 E-value=4.2 Score=29.02 Aligned_cols=46 Identities=24% Similarity=0.608 Sum_probs=28.6
Q ss_pred CCCCcCccccCccCCCCeeEEcC--CC-CccChhhHHHHHhc----CCCCCCcccce
Q 023376 226 KTSLDCSICLESFTDGDELICLP--CK-HRFHSDCLDPWVRS----CGDCPYCRRNI 275 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LP--Cg-H~FH~~CI~~WL~~----~~tCPlCR~~l 275 (283)
.+...| ||..... +..+.-=. |. ..||..||. |.. .-.||.|+...
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345667 8987543 44442223 55 689999997 333 23599997643
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.48 E-value=1 Score=31.29 Aligned_cols=50 Identities=28% Similarity=0.613 Sum_probs=33.6
Q ss_pred CCCCcCccccCccCC--CCeeEEcCCCCccChhhHHHHHhc-------CCCCCCcccce
Q 023376 226 KTSLDCSICLESFTD--GDELICLPCKHRFHSDCLDPWVRS-------CGDCPYCRRNI 275 (283)
Q Consensus 226 ~~~~~C~ICle~~~~--~~~l~~LPCgH~FH~~CI~~WL~~-------~~tCPlCR~~l 275 (283)
.....|.||...... +..+.--.|.-.||..|+.+-+.. .=.||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456789999976533 334433359999999999875421 23599986543
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.26 E-value=2 Score=33.25 Aligned_cols=45 Identities=31% Similarity=0.682 Sum_probs=29.4
Q ss_pred CcCccccCcc-CCCCeeEEcCCCCccChhhHHHHHhcC----CCCCCccc
Q 023376 229 LDCSICLESF-TDGDELICLPCKHRFHSDCLDPWVRSC----GDCPYCRR 273 (283)
Q Consensus 229 ~~C~ICle~~-~~~~~l~~LPCgH~FH~~CI~~WL~~~----~tCPlCR~ 273 (283)
..|.||...- ..+..+.--.|...||..|+.+-|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3577887642 223334333499999999998766553 25999974
No 99
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.94 E-value=4.7 Score=29.03 Aligned_cols=48 Identities=21% Similarity=0.576 Sum_probs=31.4
Q ss_pred CCCcCccccCccC-CCCeeEEcCCCCccChhhHHHHHh-----cCCCCCCcccce
Q 023376 227 TSLDCSICLESFT-DGDELICLPCKHRFHSDCLDPWVR-----SCGDCPYCRRNI 275 (283)
Q Consensus 227 ~~~~C~ICle~~~-~~~~l~~LPCgH~FH~~CI~~WL~-----~~~tCPlCR~~l 275 (283)
....| ||...+. .+..+.--.|.-.||..|+.--.. ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34556 9988775 333444445999999999853221 245699998653
No 100
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.73 E-value=0.81 Score=34.13 Aligned_cols=51 Identities=25% Similarity=0.626 Sum_probs=34.2
Q ss_pred CCCcCccccCccCC--CCeeEEcCCCCccChhhHHHHHhc--------CCCCCCcccceec
Q 023376 227 TSLDCSICLESFTD--GDELICLPCKHRFHSDCLDPWVRS--------CGDCPYCRRNIVV 277 (283)
Q Consensus 227 ~~~~C~ICle~~~~--~~~l~~LPCgH~FH~~CI~~WL~~--------~~tCPlCR~~l~~ 277 (283)
....|.||...-.. +..+.-=.|...||..|+.+-|.. .=.|+.|......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 35689999876443 233322249999999999986642 2359999765543
No 101
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=67.08 E-value=3.9 Score=38.40 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=32.1
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccCh--hhHHHHHhcCC--CCCCcccceecC
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHS--DCLDPWVRSCG--DCPYCRRNIVVN 278 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~--~CI~~WL~~~~--tCPlCR~~l~~~ 278 (283)
...|+|-+..+..+ ++...|.|+-|. .-+........ .||+|...+...
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred eecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 47899988887765 445579998444 33444333333 599998877543
No 102
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=66.49 E-value=3.1 Score=30.06 Aligned_cols=49 Identities=20% Similarity=0.440 Sum_probs=32.4
Q ss_pred CCCCcCccccCccCCCCeeEEc--CCCCccChhhHHHHHh---------cCCCCCCcccce
Q 023376 226 KTSLDCSICLESFTDGDELICL--PCKHRFHSDCLDPWVR---------SCGDCPYCRRNI 275 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~L--PCgH~FH~~CI~~WL~---------~~~tCPlCR~~l 275 (283)
.....| ||-.....+..+.-- .|...||..|+.---. ..-.||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345667 898875555555444 5999999999853211 245699997643
No 103
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.95 E-value=1.9 Score=31.32 Aligned_cols=45 Identities=27% Similarity=0.676 Sum_probs=29.9
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc--C---CCCCCccc
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS--C---GDCPYCRR 273 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~--~---~tCPlCR~ 273 (283)
..|.||...-..+..+.--.|...||..||.+=|.. . =.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 367888765334444433359999999999865543 1 25998864
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=65.94 E-value=6.2 Score=32.08 Aligned_cols=45 Identities=22% Similarity=0.502 Sum_probs=32.3
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHh---------c--CCCCCCccc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVR---------S--CGDCPYCRR 273 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~---------~--~~tCPlCR~ 273 (283)
..+..|.||.+. ++.+.-=.|--.||..||.+-|. . .-.||+|..
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 457889999864 54443335899999999997663 1 225999974
No 105
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=65.67 E-value=4.4 Score=37.96 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=32.9
Q ss_pred CCcCccccCccCCCCeeEEcCCCCc--cChhhHHHHHhcCC--CCCCcccceecC
Q 023376 228 SLDCSICLESFTDGDELICLPCKHR--FHSDCLDPWVRSCG--DCPYCRRNIVVN 278 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~--FH~~CI~~WL~~~~--tCPlCR~~l~~~ 278 (283)
...|+|-+..+..+ ++...|.|+ |-..-+..+....+ .||+|...+...
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 46799988887765 444579999 54444444443333 499999887654
No 106
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=65.60 E-value=2 Score=30.45 Aligned_cols=47 Identities=21% Similarity=0.555 Sum_probs=31.0
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHh---cCCCCCCccc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVR---SCGDCPYCRR 273 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~---~~~tCPlCR~ 273 (283)
.+...| ||...+.....+.--.|.-.||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 455678 9987765333454445999999999864322 2346988864
No 107
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=64.77 E-value=3.9 Score=27.14 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=28.3
Q ss_pred cCccccCccCCCCe-eEEc-CCCCccChhhHHHHH----hcCCCCCCcc
Q 023376 230 DCSICLESFTDGDE-LICL-PCKHRFHSDCLDPWV----RSCGDCPYCR 272 (283)
Q Consensus 230 ~C~ICle~~~~~~~-l~~L-PCgH~FH~~CI~~WL----~~~~tCPlCR 272 (283)
.|.||...+..+.. +.-- .|.-.||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47889888765443 3333 488899999975322 2456799885
No 108
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=64.16 E-value=5.1 Score=28.04 Aligned_cols=34 Identities=29% Similarity=0.768 Sum_probs=24.3
Q ss_pred CCCCcCccccCccCCCCeeE-Ec-CCCCccChhhHH
Q 023376 226 KTSLDCSICLESFTDGDELI-CL-PCKHRFHSDCLD 259 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~-~L-PCgH~FH~~CI~ 259 (283)
.....|.+|...+..+...+ -- .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45678999999987665443 33 699999999974
No 109
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.99 E-value=2.2 Score=30.26 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=32.1
Q ss_pred CCCCcCccccCccCCCC-eeEEcCCCCccChhhHHHHH----hcCCCCCCcccce
Q 023376 226 KTSLDCSICLESFTDGD-ELICLPCKHRFHSDCLDPWV----RSCGDCPYCRRNI 275 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~-~l~~LPCgH~FH~~CI~~WL----~~~~tCPlCR~~l 275 (283)
.....| ||...+..+. .+.--.|.-.||..|+.--. .....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 345668 7987765554 44333599999999986432 1244699997643
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.24 E-value=10 Score=29.07 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=22.9
Q ss_pred CCCcCccccCcc------CCCCeeEEcCCCCccChhhHHH
Q 023376 227 TSLDCSICLESF------TDGDELICLPCKHRFHSDCLDP 260 (283)
Q Consensus 227 ~~~~C~ICle~~------~~~~~l~~LPCgH~FH~~CI~~ 260 (283)
....|.||+..- ..++.+.--.|+..||..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 356799998753 1223343445999999999953
No 111
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=59.82 E-value=2.5 Score=30.03 Aligned_cols=44 Identities=36% Similarity=0.762 Sum_probs=27.6
Q ss_pred cCccccCccCCCCeeEEcCCCCccChhhHHHHHhc-----CCCCCCccc
Q 023376 230 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS-----CGDCPYCRR 273 (283)
Q Consensus 230 ~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~-----~~tCPlCR~ 273 (283)
.|.||...-..+..+.--.|...||..||.+=|.. .=.||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677654333333432348899999999865543 225999864
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=59.20 E-value=6.5 Score=30.08 Aligned_cols=48 Identities=21% Similarity=0.529 Sum_probs=32.6
Q ss_pred CCcCccccCccCCCCeeEEc--CCCCccChhhHHHHHh----------cCCCCCCcccce
Q 023376 228 SLDCSICLESFTDGDELICL--PCKHRFHSDCLDPWVR----------SCGDCPYCRRNI 275 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~L--PCgH~FH~~CI~~WL~----------~~~tCPlCR~~l 275 (283)
...|.||...+......+.- .|.-.||..|+.--.. ..-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46799999998655433333 5889999999853210 234699997653
No 113
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=58.45 E-value=2.9 Score=36.65 Aligned_cols=45 Identities=36% Similarity=0.781 Sum_probs=27.0
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhhHHHHHhc--CC---CCCCccc
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRS--CG---DCPYCRR 273 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~--~~---tCPlCR~ 273 (283)
..|.||...-..+..+..=.|...||..|+.+=|.. .. .||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 368888765333444433359999999999965543 22 4999965
No 114
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=58.15 E-value=1.5 Score=34.08 Aligned_cols=47 Identities=30% Similarity=0.638 Sum_probs=32.0
Q ss_pred cCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCC----CCCCccccee
Q 023376 230 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCG----DCPYCRRNIV 276 (283)
Q Consensus 230 ~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~----tCPlCR~~l~ 276 (283)
.|.||...-..+..+.--.|...||..|+.+=|.... .||.|...+.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 5778876544455554445999999999987554422 4999976543
No 115
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=57.91 E-value=8 Score=27.45 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=25.8
Q ss_pred CCCCcCccccCccCCCCeeEEcCC-CCccChhhHHHH
Q 023376 226 KTSLDCSICLESFTDGDELICLPC-KHRFHSDCLDPW 261 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPC-gH~FH~~CI~~W 261 (283)
.+..-|.||.++ ..++.+-| +-+||..|..+.
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 456789999987 45778889 899999997765
No 116
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=57.55 E-value=1.8 Score=34.34 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=28.8
Q ss_pred CCCcCccccCccCCCCe-eEEcCCCCccChhhHHHHHhcCCCCCCccc
Q 023376 227 TSLDCSICLESFTDGDE-LICLPCKHRFHSDCLDPWVRSCGDCPYCRR 273 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~-l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~ 273 (283)
....|.+|...|..-.. --.-.||.+||..|....+.....|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 34679999998864321 111259999999998776655566777643
No 117
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=56.80 E-value=2 Score=30.26 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=27.4
Q ss_pred CCcCccccCccCCCCeeEEc--CCCCccChhhHHHH----Hh----cCCCCCCccc
Q 023376 228 SLDCSICLESFTDGDELICL--PCKHRFHSDCLDPW----VR----SCGDCPYCRR 273 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~L--PCgH~FH~~CI~~W----L~----~~~tCPlCR~ 273 (283)
...| ||-.....+..+.-= .|.-.||..|+.-- .. ..-.||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3456 897665555544322 38889999997311 00 1346999974
No 118
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=55.15 E-value=3 Score=34.31 Aligned_cols=48 Identities=25% Similarity=0.590 Sum_probs=31.2
Q ss_pred CCCCcCccccCccCCCC-eeEEcCCCCccChhhHHHHHh-----cCCCCCCcccc
Q 023376 226 KTSLDCSICLESFTDGD-ELICLPCKHRFHSDCLDPWVR-----SCGDCPYCRRN 274 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~-~l~~LPCgH~FH~~CI~~WL~-----~~~tCPlCR~~ 274 (283)
.....| ||...+..+. .+..-.|.-.||..|+.--.. ..-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345678 9988765333 443335999999999853221 24469999763
No 119
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=54.84 E-value=8.4 Score=29.73 Aligned_cols=45 Identities=22% Similarity=0.594 Sum_probs=29.1
Q ss_pred CCCCcCccccCccCCCCeeEEc--CCCCccChhhHHHHHhcCC----CCCCcccce
Q 023376 226 KTSLDCSICLESFTDGDELICL--PCKHRFHSDCLDPWVRSCG----DCPYCRRNI 275 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~L--PCgH~FH~~CI~~WL~~~~----tCPlCR~~l 275 (283)
..+..|.||.+ .++.+.-= .|--.||..||. |.... .||.|...+
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 45678999984 24433322 377999999997 44322 488776544
No 120
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=54.80 E-value=2.6 Score=32.32 Aligned_cols=44 Identities=34% Similarity=0.755 Sum_probs=28.3
Q ss_pred cCccccCccCCCCeeEEcCCCCccChhhHHHHHhcC----CCCCCccc
Q 023376 230 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSC----GDCPYCRR 273 (283)
Q Consensus 230 ~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~----~tCPlCR~ 273 (283)
.|.||...-.....+.--.|...||..|+.+=|... -.||.|..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 466776553333344333599999999998755542 24888854
No 121
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=54.80 E-value=10 Score=27.56 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=25.4
Q ss_pred CCCCcCccccCccCCCCeeEEc-CCCCccChhhHHHH
Q 023376 226 KTSLDCSICLESFTDGDELICL-PCKHRFHSDCLDPW 261 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~L-PCgH~FH~~CI~~W 261 (283)
.+...|.+|...|..-..--.- .||.+||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456899999998754321111 49999999998665
No 122
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.37 E-value=9.4 Score=27.69 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=25.1
Q ss_pred CCCCcCccccCccCCCCeeEEc-CCCCccChhhHHHH
Q 023376 226 KTSLDCSICLESFTDGDELICL-PCKHRFHSDCLDPW 261 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~L-PCgH~FH~~CI~~W 261 (283)
.+...|.+|...|..-..--.- .||.+||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3456799999998743321111 49999999998654
No 123
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.23 E-value=7.8 Score=30.55 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=24.0
Q ss_pred CCcCccccCccCCCCeeEEc-CCCCccChhhHHHH
Q 023376 228 SLDCSICLESFTDGDELICL-PCKHRFHSDCLDPW 261 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~L-PCgH~FH~~CI~~W 261 (283)
...|.+|...|..-..--.- .||.+||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 46799999998743221111 49999999997654
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=53.09 E-value=8.9 Score=28.39 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=25.4
Q ss_pred CCCcCccccCccCCCCeeE-EcCCCCccChhhHHHHH
Q 023376 227 TSLDCSICLESFTDGDELI-CLPCKHRFHSDCLDPWV 262 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~-~LPCgH~FH~~CI~~WL 262 (283)
+...|.+|...|..-..-- --.||.+||..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3467999999887433211 22499999999987654
No 125
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.88 E-value=11 Score=27.44 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=24.5
Q ss_pred CCCCcCccccCccCCCCeeEE-cCCCCccChhhHHHH
Q 023376 226 KTSLDCSICLESFTDGDELIC-LPCKHRFHSDCLDPW 261 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~-LPCgH~FH~~CI~~W 261 (283)
.....|.+|...|..-..--. -.||.+||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 345689999999864321111 149999999997654
No 126
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=52.49 E-value=9.7 Score=28.14 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCCCcCccccCccCCCCeeEE-cCCCCccChhhHHHHHh-------cCCCCCCcccce
Q 023376 226 KTSLDCSICLESFTDGDELIC-LPCKHRFHSDCLDPWVR-------SCGDCPYCRRNI 275 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~-LPCgH~FH~~CI~~WL~-------~~~tCPlCR~~l 275 (283)
.....|.+|...|..-..--. -.||.+||..|....+. ....|-.|-..+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 445689999998875432111 14999999999865432 123466665544
No 127
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=50.60 E-value=16 Score=29.12 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=30.3
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHH------hc-----CCCCCCccc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWV------RS-----CGDCPYCRR 273 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL------~~-----~~tCPlCR~ 273 (283)
..+..|.||-+. ++.+.-=.|-..||..||.+-+ .. .=.|++|..
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 456779999864 3333222488999999999752 21 125999964
No 128
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.54 E-value=3.2 Score=28.68 Aligned_cols=37 Identities=24% Similarity=0.599 Sum_probs=26.0
Q ss_pred CCcCccccCccCCCCeeEEc---C--CCCccChhhHHHHHhc
Q 023376 228 SLDCSICLESFTDGDELICL---P--CKHRFHSDCLDPWVRS 264 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~L---P--CgH~FH~~CI~~WL~~ 264 (283)
...|+-|...++....-..+ . |++.||..|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 45688887777655532222 2 8899999999999754
No 129
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=49.72 E-value=3.4 Score=28.35 Aligned_cols=43 Identities=28% Similarity=0.660 Sum_probs=26.6
Q ss_pred CCCcCccccCccCCCCeeEEcC--CC-CccChhhHHHHHhc----CCCCCCccc
Q 023376 227 TSLDCSICLESFTDGDELICLP--CK-HRFHSDCLDPWVRS----CGDCPYCRR 273 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LP--Cg-H~FH~~CI~~WL~~----~~tCPlCR~ 273 (283)
+...| ||.... .+..+.-=. |. ..||..|+. |.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34556 998754 344443224 65 699999997 333 235998864
No 130
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.33 E-value=23 Score=26.59 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=35.4
Q ss_pred CCCcCccccCccCCCC----eeEEcCCCCccChhhHHHHHhc-CCCCCCccccee
Q 023376 227 TSLDCSICLESFTDGD----ELICLPCKHRFHSDCLDPWVRS-CGDCPYCRRNIV 276 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~----~l~~LPCgH~FH~~CI~~WL~~-~~tCPlCR~~l~ 276 (283)
....|.||-+.+.... .+...-|+--.|..|+.--.+. +..||-|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4578999999875432 2222248888899998655443 678999998775
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=48.48 E-value=13 Score=26.21 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=23.0
Q ss_pred CcCccccCccCCCCeeEEc-CCCCccChhhHHHH
Q 023376 229 LDCSICLESFTDGDELICL-PCKHRFHSDCLDPW 261 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~L-PCgH~FH~~CI~~W 261 (283)
..|.+|...|..-..--.- .||.+||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5799999988743221111 49999999997543
No 132
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=48.38 E-value=3.7 Score=28.23 Aligned_cols=43 Identities=26% Similarity=0.651 Sum_probs=25.8
Q ss_pred CCCcCccccCccCCCCeeEEcC--CC-CccChhhHHHHHhc----CCCCCCccc
Q 023376 227 TSLDCSICLESFTDGDELICLP--CK-HRFHSDCLDPWVRS----CGDCPYCRR 273 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LP--Cg-H~FH~~CI~~WL~~----~~tCPlCR~ 273 (283)
+...| ||..... +..+.-=. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 8977532 44332223 55 689999997 433 235998854
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.06 E-value=6.6 Score=30.09 Aligned_cols=12 Identities=33% Similarity=1.021 Sum_probs=10.8
Q ss_pred cChhhHHHHHhc
Q 023376 253 FHSDCLDPWVRS 264 (283)
Q Consensus 253 FH~~CI~~WL~~ 264 (283)
||..||..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
No 134
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=48.00 E-value=6.6 Score=30.13 Aligned_cols=12 Identities=42% Similarity=1.132 Sum_probs=10.8
Q ss_pred cChhhHHHHHhc
Q 023376 253 FHSDCLDPWVRS 264 (283)
Q Consensus 253 FH~~CI~~WL~~ 264 (283)
||..||..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 135
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=46.79 E-value=10 Score=26.30 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=28.1
Q ss_pred CCCCCcCccccCccCCCCeeEEcCCCCccCh-hhHHHHHhcCCCCCCcccc
Q 023376 225 SKTSLDCSICLESFTDGDELICLPCKHRFHS-DCLDPWVRSCGDCPYCRRN 274 (283)
Q Consensus 225 ~~~~~~C~ICle~~~~~~~l~~LPCgH~FH~-~CI~~WL~~~~tCPlCR~~ 274 (283)
-...+.|.+|...+..+... ..=+.+||. .|....+ ...|--|...
T Consensus 24 H~~CF~C~~C~~~L~~~~~~--~~~g~~yC~~~cy~~~f--~~~C~~C~~~ 70 (76)
T 1iml_A 24 HRPCLKCEKCGKTLTSGGHA--EHEGKPYCNHPCYSAMF--GPKGFGRGGA 70 (76)
T ss_dssp ETTTCBCTTTCCBCCTTTEE--EETTEEEETTTHHHHHS--SCCCSSCCCS
T ss_pred cCCCCCccccCccCCCCceE--CcCCeEeeCHHHHHHHh--CccCCCcCCc
Confidence 34578888888777665422 235677887 5875533 3457777543
No 136
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.76 E-value=15 Score=25.43 Aligned_cols=39 Identities=18% Similarity=0.542 Sum_probs=26.1
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
...|..|-..+..++.+. .-+..||..|+ .|..|...|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccC
Confidence 456888888877666543 34677777773 4777776664
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.58 E-value=10 Score=32.40 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=24.0
Q ss_pred CCcCccccCccCCCCeeEEc-CCCCccChhhHHHH
Q 023376 228 SLDCSICLESFTDGDELICL-PCKHRFHSDCLDPW 261 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~L-PCgH~FH~~CI~~W 261 (283)
...|.+|...|..-..--.- .||.+||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47899999988743211111 49999999997654
No 138
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.90 E-value=9.9 Score=26.27 Aligned_cols=43 Identities=28% Similarity=0.524 Sum_probs=27.3
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCc
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYC 271 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlC 271 (283)
..|--|+..+.......--.|++.||.+|=.=.-..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4588898888543222222499999999943222334469988
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.67 E-value=12 Score=32.34 Aligned_cols=48 Identities=17% Similarity=0.379 Sum_probs=30.9
Q ss_pred CCcCccccCccCCCCeeEEc-CCCCccChhhHHHHHhc--------CCCCCCcccce
Q 023376 228 SLDCSICLESFTDGDELICL-PCKHRFHSDCLDPWVRS--------CGDCPYCRRNI 275 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~L-PCgH~FH~~CI~~WL~~--------~~tCPlCR~~l 275 (283)
...|.+|...|..-..--.- .||.+||..|...++.. ...|-.|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 46899999988744321122 49999999998755321 22476665544
No 140
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.32 E-value=21 Score=25.22 Aligned_cols=40 Identities=23% Similarity=0.653 Sum_probs=28.0
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
....|.-|-..+..++.+.. -+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 35679999888876665543 4677888774 5777777664
No 141
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=44.08 E-value=9.7 Score=22.47 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=21.5
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhhH
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDCL 258 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~CI 258 (283)
..|+.|-..+...+.+. .-|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 46999998888776653 46788999884
No 142
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=43.21 E-value=2.2 Score=26.34 Aligned_cols=18 Identities=33% Similarity=0.748 Sum_probs=12.8
Q ss_pred CCCcCccccCccCCCCee
Q 023376 227 TSLDCSICLESFTDGDEL 244 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l 244 (283)
+.+.|+||+..+...+.+
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 357899998887765543
No 143
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.47 E-value=10 Score=29.19 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=22.3
Q ss_pred CcCccccCccCC------C-CeeEEcCCCCccChhhHHHH
Q 023376 229 LDCSICLESFTD------G-DELICLPCKHRFHSDCLDPW 261 (283)
Q Consensus 229 ~~C~ICle~~~~------~-~~l~~LPCgH~FH~~CI~~W 261 (283)
..|.||+..-.. + +.+.--.|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 359999875421 1 23333359999999999865
No 144
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.69 E-value=45 Score=23.74 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=26.3
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
....|..|-..+.. ..+ ..-+..||..|+ .|-.|...|.
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KARDKYRHPECF--------VCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ESSSCEECTTTC--------CCSSSCCCTT
T ss_pred cCCCcccCCCEecc-cEE--EECCceECccCC--------EecCCCCCCC
Confidence 45678889888774 322 246778888874 5777776654
No 145
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=40.97 E-value=15 Score=29.40 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=24.9
Q ss_pred CCCCcCccccCccCC--CCeeEEcCCCCccChhhHH
Q 023376 226 KTSLDCSICLESFTD--GDELICLPCKHRFHSDCLD 259 (283)
Q Consensus 226 ~~~~~C~ICle~~~~--~~~l~~LPCgH~FH~~CI~ 259 (283)
.....|.||...|.. +......-|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 457889999999942 3344444599999999964
No 146
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.31 E-value=27 Score=24.68 Aligned_cols=40 Identities=25% Similarity=0.524 Sum_probs=27.4
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
....|..|-..+...+.+. .-+..||..|+ .|-.|...|.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcC
Confidence 4567999988887665553 35778888874 4667766554
No 147
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=38.67 E-value=2.7 Score=23.66 Aligned_cols=13 Identities=31% Similarity=0.887 Sum_probs=10.7
Q ss_pred ccChhhHHHHHhc
Q 023376 252 RFHSDCLDPWVRS 264 (283)
Q Consensus 252 ~FH~~CI~~WL~~ 264 (283)
.||..|-++||..
T Consensus 6 ffcetcskpwlvg 18 (26)
T 1loi_A 6 FFCETCSKPWLVG 18 (26)
T ss_dssp HHHHTSSCTTGGG
T ss_pred HHHHhcCCchhhh
Confidence 5899999999853
No 148
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=37.13 E-value=7.1 Score=27.01 Aligned_cols=43 Identities=28% Similarity=0.642 Sum_probs=26.3
Q ss_pred CCCcCccccCccCCCCeeEEcC--CC-CccChhhHHHHHhc----CCCCCCccc
Q 023376 227 TSLDCSICLESFTDGDELICLP--CK-HRFHSDCLDPWVRS----CGDCPYCRR 273 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LP--Cg-H~FH~~CI~~WL~~----~~tCPlCR~ 273 (283)
+...| ||.... .+..+.-=. |. ..||..|+. |.. .-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34556 997753 344332223 54 799999997 322 235999964
No 149
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=36.76 E-value=9.9 Score=28.43 Aligned_cols=44 Identities=20% Similarity=0.520 Sum_probs=26.5
Q ss_pred CCCCcCccccCccCCCCeeEEcCCC---CccChhhHHHHHhc----CCCCCC-ccc
Q 023376 226 KTSLDCSICLESFTDGDELICLPCK---HRFHSDCLDPWVRS----CGDCPY-CRR 273 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCg---H~FH~~CI~~WL~~----~~tCPl-CR~ 273 (283)
.+...| ||..... ++.+..=.|. -.||..||. |.. .-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345567 9986433 4433222344 689999985 322 335999 975
No 150
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=36.65 E-value=8.4 Score=25.39 Aligned_cols=42 Identities=21% Similarity=0.529 Sum_probs=26.7
Q ss_pred ccccCccCCCCeeEEcCCCCccChhhHHHHHh---cCCCCCCccc
Q 023376 232 SICLESFTDGDELICLPCKHRFHSDCLDPWVR---SCGDCPYCRR 273 (283)
Q Consensus 232 ~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~---~~~tCPlCR~ 273 (283)
.||......+..+.--.|.-.||..|+.--.. ..-.||.|+.
T Consensus 7 C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 37876655334454445999999999864322 2346988864
No 151
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.26 E-value=7.5 Score=36.20 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCcCccccCccCCCCe-eEEcCCCCccChhhHHHHHhc-------CCCCCCcccce
Q 023376 227 TSLDCSICLESFTDGDE-LICLPCKHRFHSDCLDPWVRS-------CGDCPYCRRNI 275 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~-l~~LPCgH~FH~~CI~~WL~~-------~~tCPlCR~~l 275 (283)
....|.+|...|..-.. --.-.||++||..|...++.. ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35689999988863321 111249999999999776522 23477775443
No 152
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.51 E-value=32 Score=23.22 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=13.5
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhh
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDC 257 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~C 257 (283)
..|..|-..+...+.++ ..-+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C 33 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKL-EYGGQTWHEHC 33 (72)
T ss_dssp CBCSSSCCBCCSSSCEE-CSTTCCEETTT
T ss_pred CCCccCCCccccCccEE-EECccccCccc
Confidence 34666666555432221 12455566555
No 153
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.39 E-value=55 Score=22.67 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=25.9
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccce
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l 275 (283)
....|..|-..+.. ..+ ..-+..||..|+ .|-.|+..|
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFV--KLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCS-SCE--ECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccC-cEE--EECcceeCcCcC--------eeCCCCCCC
Confidence 35679999888774 333 246788888884 577776665
No 154
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.28 E-value=26 Score=28.93 Aligned_cols=36 Identities=28% Similarity=0.590 Sum_probs=25.6
Q ss_pred CCCCcCccccCccCCCCeeEEc--CCCCccChhhHHHHHhc
Q 023376 226 KTSLDCSICLESFTDGDELICL--PCKHRFHSDCLDPWVRS 264 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~L--PCgH~FH~~CI~~WL~~ 264 (283)
..+..|.||-+. ++.+.-- .|...||..||+.++..
T Consensus 77 G~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 446789999864 3333222 48899999999998754
No 155
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.97 E-value=8.2 Score=29.84 Aligned_cols=24 Identities=21% Similarity=0.599 Sum_probs=15.5
Q ss_pred CCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 248 PCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 248 PCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
.||+.|. .-+.....||.|+.+-.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 5888881 12234567999987643
No 156
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=32.85 E-value=31 Score=32.50 Aligned_cols=45 Identities=29% Similarity=0.547 Sum_probs=30.9
Q ss_pred CCCCcCccccCccCCCCeeEEc--CCCCccChhhHHHHHhc----------CCCCCCccc
Q 023376 226 KTSLDCSICLESFTDGDELICL--PCKHRFHSDCLDPWVRS----------CGDCPYCRR 273 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~L--PCgH~FH~~CI~~WL~~----------~~tCPlCR~ 273 (283)
..+..|.||-+. ++.+..= .|...||..||+.++.. .=.|=+|.-
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 456789999764 3333333 58899999999999832 224877753
No 157
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=32.01 E-value=19 Score=25.21 Aligned_cols=38 Identities=26% Similarity=0.576 Sum_probs=20.9
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
..|..|-..+..++.+. .-+..||..|+ .|-.|...|.
T Consensus 8 ~~C~~C~~~I~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQ--CDGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp CBCSSSCCBCSSTTEEE--ETTEEEESSSE--------ECSSSCCEEC
T ss_pred CcCcCcCccccCceeEE--eCCcccccccC--------ccCCCCCCCC
Confidence 45777766665554432 24556666663 3555655543
No 158
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.58 E-value=73 Score=22.66 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=13.3
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhh
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDC 257 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~C 257 (283)
..|.-|-..+...+.+ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~v--~a~~~~~H~~C 42 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LANQQVFHISC 42 (91)
T ss_dssp CBCTTTCCBCCTTSEE--ECSSSEEETTT
T ss_pred CcCccCCCccCCceeE--EECCCEECCCC
Confidence 4466665555544333 23445555555
No 159
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=30.85 E-value=5.9 Score=28.67 Aligned_cols=16 Identities=19% Similarity=0.650 Sum_probs=13.7
Q ss_pred CCCCccChhhHHHHHh
Q 023376 248 PCKHRFHSDCLDPWVR 263 (283)
Q Consensus 248 PCgH~FH~~CI~~WL~ 263 (283)
.|++.||..|...|=.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 4899999999999833
No 160
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.66 E-value=61 Score=22.56 Aligned_cols=38 Identities=18% Similarity=0.538 Sum_probs=22.1
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
...|.-|-..+. +..+ ..-+..||..|+ .|-.|...|.
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCCC--------EeCCCCCccC
Confidence 456777777666 3322 235666776663 4666666554
No 161
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.51 E-value=45 Score=23.12 Aligned_cols=40 Identities=28% Similarity=0.647 Sum_probs=25.3
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
...|..|-..+..++.++ ..-+..||..|+ .|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCT
T ss_pred CCcCccCCcccccCceEE-EECccccccccC--------chhhCCCccC
Confidence 356888888777655432 234677787774 5777766654
No 162
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.94 E-value=43 Score=22.85 Aligned_cols=41 Identities=20% Similarity=0.599 Sum_probs=25.2
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
....|+-|-..+...+.++. .-+..||..|+ .|-.|...|.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE-ETTEEECTTTC--------CCTTTCCCCG
T ss_pred CCCCchhcCCccCCCceEEE-eCccEeccccC--------eECCCCCCCC
Confidence 34668888888765443321 34667777773 4666766554
No 163
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.82 E-value=43 Score=22.62 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=15.8
Q ss_pred CCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHh
Q 023376 227 TSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVR 263 (283)
Q Consensus 227 ~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~ 263 (283)
..+.|..|...+..... ...=+.+||..|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~--~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHF--YAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCE--EESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcC--EeeCCeEECHHHHHHHHc
Confidence 34555555555432111 112345555555555444
No 164
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.64 E-value=36 Score=22.94 Aligned_cols=38 Identities=21% Similarity=0.540 Sum_probs=19.2
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccce
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l 275 (283)
..|..|-..+...+.++. .-+..||..|+ .|-.|...|
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L 43 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETCF--------ICHRCQQPI 43 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTTT--------CCSSSCCCC
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccCC--------cccccCCcc
Confidence 346666666665432211 23555666553 455555544
No 165
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.15 E-value=6 Score=36.17 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=31.2
Q ss_pred CCCCcCccccCccCCCCeeEE--cCCC--CccChhhHHHHHhcCCCCCCcccc
Q 023376 226 KTSLDCSICLESFTDGDELIC--LPCK--HRFHSDCLDPWVRSCGDCPYCRRN 274 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~--LPCg--H~FH~~CI~~WL~~~~tCPlCR~~ 274 (283)
+....|+||-..-... .+.. -.=| +.+|.-|-..|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5678899996553322 1110 0122 567778888998888899999654
No 166
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.13 E-value=48 Score=22.41 Aligned_cols=38 Identities=24% Similarity=0.692 Sum_probs=19.9
Q ss_pred CcCccccCccCC--CCeeEEcCCCCccChhhHHHHHhcCCCCCCcccce
Q 023376 229 LDCSICLESFTD--GDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275 (283)
Q Consensus 229 ~~C~ICle~~~~--~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l 275 (283)
..|..|-..+.. ...++ ..-+..||..|+ .|-.|...|
T Consensus 6 ~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~CF--------~C~~C~~~L 45 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYI-SFEERQWHNDCF--------NCKKCSLSL 45 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCE-ECSSCEECTTTC--------BCSSSCCBC
T ss_pred CCCcCCCccccCCCCcceE-EECCcccCcccC--------EeccCCCcC
Confidence 456667666654 22221 134566666663 456665554
No 167
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.33 E-value=31 Score=28.16 Aligned_cols=46 Identities=20% Similarity=0.423 Sum_probs=31.2
Q ss_pred CCCcCccccCccC--CCCeeEEcCCCCccChhhHHHHHhcCC--CCCCccc
Q 023376 227 TSLDCSICLESFT--DGDELICLPCKHRFHSDCLDPWVRSCG--DCPYCRR 273 (283)
Q Consensus 227 ~~~~C~ICle~~~--~~~~l~~LPCgH~FH~~CI~~WL~~~~--tCPlCR~ 273 (283)
....|.+|...|. .+......-|.|.+|..|- -|+.... .|-+|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 5788999999864 3444445569999999997 3443332 2666654
No 168
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=27.20 E-value=33 Score=26.20 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=28.9
Q ss_pred CCCCCCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcc
Q 023376 224 ASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCR 272 (283)
Q Consensus 224 ~~~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR 272 (283)
+-...+.|.+|-..+..++... +.=+..||..|....+... |..|.
T Consensus 32 ~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~~~--~~~~~ 77 (123)
T 2l3k_A 32 YHLECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTKIN--GGSGG 77 (123)
T ss_dssp CCTTTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHHHH--TCCCC
T ss_pred cccccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhccc--cCCCC
Confidence 4456788888887775554332 2357788888887776543 44443
No 169
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.29 E-value=45 Score=22.37 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=4.8
Q ss_pred cCccccCccC
Q 023376 230 DCSICLESFT 239 (283)
Q Consensus 230 ~C~ICle~~~ 239 (283)
.|..|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8z_A 7 GCVQCKKPIT 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred CCcccCCeec
Confidence 3555554443
No 170
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.13 E-value=22 Score=25.22 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=4.8
Q ss_pred CCCCCccccee
Q 023376 266 GDCPYCRRNIV 276 (283)
Q Consensus 266 ~tCPlCR~~l~ 276 (283)
-.||.|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (69)
T 2pk7_A 9 LACPICKGPLK 19 (69)
T ss_dssp CCCTTTCCCCE
T ss_pred eeCCCCCCcCe
Confidence 34444444443
No 171
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.59 E-value=51 Score=23.46 Aligned_cols=38 Identities=18% Similarity=0.570 Sum_probs=20.9
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
...|..|-..+. +..+. .-+..||..|+ .|-.|...|.
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--ALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--ETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEec-ceEEE--ECCccccccCC--------ccCCCCCCCC
Confidence 345777766663 33332 34666676663 4666665553
No 172
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=25.33 E-value=56 Score=20.27 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhcCC
Q 023376 112 TVLLARARLLERLRGVS 128 (283)
Q Consensus 112 ~v~~Ar~RL~erLR~~~ 128 (283)
-|..||.||.+.|++-.
T Consensus 18 rV~~aR~rL~eaL~ad~ 34 (36)
T 2l2l_B 18 RVQQVRKKLEEALMADI 34 (36)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHccc
Confidence 58899999999998653
No 173
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.23 E-value=61 Score=21.67 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=5.1
Q ss_pred cCccccCccC
Q 023376 230 DCSICLESFT 239 (283)
Q Consensus 230 ~C~ICle~~~ 239 (283)
.|..|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8x_A 7 GCHQCGEFII 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCCEec
Confidence 4555555544
No 174
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=25.19 E-value=48 Score=22.05 Aligned_cols=40 Identities=20% Similarity=0.609 Sum_probs=27.2
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
...|..|-..+...+.++. .-+..||..|+ .|-.|...|.
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCC
Confidence 4579999888886664422 35677888875 5777776654
No 175
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.73 E-value=36 Score=26.22 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=27.8
Q ss_pred CCcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 228 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 228 ~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
...|.-|-..+.....+. .-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEccccc--------CcCcCCCccc
Confidence 467999988887554343 36778888884 5888887774
No 176
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=24.45 E-value=23 Score=25.72 Aligned_cols=36 Identities=22% Similarity=0.485 Sum_probs=21.6
Q ss_pred cCccccCccCC--CCeeEEcC-CCCccChhhHHHHHhcC
Q 023376 230 DCSICLESFTD--GDELICLP-CKHRFHSDCLDPWVRSC 265 (283)
Q Consensus 230 ~C~ICle~~~~--~~~l~~LP-CgH~FH~~CI~~WL~~~ 265 (283)
-|+-|-..+.. +...+.-| |++.||..|-.+|=..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC
Confidence 36655443321 11223345 99999999999984443
No 177
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.88 E-value=36 Score=22.59 Aligned_cols=37 Identities=16% Similarity=0.495 Sum_probs=20.1
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
..|+.|-..+. +..+ ..-+..||..|+ .|-.|...|.
T Consensus 6 ~~C~~C~~~I~-~~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV--NAMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECC-SCEE--CCTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCcccCCEec-ceEE--EECccccccCcC--------EECCCCCCCC
Confidence 45666666665 3322 234566666663 4666665553
No 178
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.72 E-value=64 Score=24.45 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=27.4
Q ss_pred CCCCcCccccCccCC-CCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 226 KTSLDCSICLESFTD-GDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 226 ~~~~~C~ICle~~~~-~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
...+.|..|...+.. +... ...=|..||..|...-+.....|..|...|.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCE-EEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeE-EEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 456777777666642 2111 1134556777776654443335777766664
No 179
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.58 E-value=49 Score=22.71 Aligned_cols=39 Identities=23% Similarity=0.669 Sum_probs=21.6
Q ss_pred CcCccccCccCC--CCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 229 LDCSICLESFTD--GDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 229 ~~C~ICle~~~~--~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
..|+.|-..+.. .... +..-+..||..|+ .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCcccC--------ChhhCCCcCC
Confidence 457777777664 2222 1235666777763 4666665553
No 180
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.02 E-value=52 Score=22.82 Aligned_cols=37 Identities=24% Similarity=0.612 Sum_probs=22.9
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCccccee
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 276 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~ 276 (283)
..|+.|-..+. +..+. .-+..||..|+ .|-.|...|.
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec-cceEE--ECCceeCccCC--------ccccCCCCCC
Confidence 46888888776 33332 35677777774 4666665554
No 181
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.94 E-value=61 Score=21.63 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=5.1
Q ss_pred cCccccCccC
Q 023376 230 DCSICLESFT 239 (283)
Q Consensus 230 ~C~ICle~~~ 239 (283)
.|..|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 4555555543
No 182
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=22.76 E-value=24 Score=24.97 Aligned_cols=46 Identities=22% Similarity=0.499 Sum_probs=29.5
Q ss_pred CcCccccCccCCC-CeeEEcCCCCccChhhHHHHHh-----cCCCCCCcccc
Q 023376 229 LDCSICLESFTDG-DELICLPCKHRFHSDCLDPWVR-----SCGDCPYCRRN 274 (283)
Q Consensus 229 ~~C~ICle~~~~~-~~l~~LPCgH~FH~~CI~~WL~-----~~~tCPlCR~~ 274 (283)
....||...+..+ ..+.--.|.-.||..|+.---. ..-.||.|+..
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3344898766533 3443345999999999953321 24569999765
No 183
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.19 E-value=20 Score=25.30 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=4.9
Q ss_pred CCCcCccccC
Q 023376 227 TSLDCSICLE 236 (283)
Q Consensus 227 ~~~~C~ICle 236 (283)
+...|++|..
T Consensus 9 eiL~CP~ck~ 18 (67)
T 2jny_A 9 EVLACPKDKG 18 (67)
T ss_dssp CCCBCTTTCC
T ss_pred HHhCCCCCCC
Confidence 3345555544
No 184
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.16 E-value=74 Score=21.71 Aligned_cols=34 Identities=24% Similarity=0.551 Sum_probs=14.6
Q ss_pred CCCCcCccccCccCCCCeeEEcCCCCccChhhHHH
Q 023376 226 KTSLDCSICLESFTDGDELICLPCKHRFHSDCLDP 260 (283)
Q Consensus 226 ~~~~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~ 260 (283)
.+.+.|..|...+..+.... +.=+.+||..|...
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQA 62 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHH
T ss_pred CCcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChH
Confidence 34455555655554222111 12334455555443
No 185
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.79 E-value=56 Score=24.79 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=34.9
Q ss_pred CCCCcCccccCccCC-CCeeEEcCCCCccChhhHHHHHhcCCCCCCcccceec
Q 023376 226 KTSLDCSICLESFTD-GDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVV 277 (283)
Q Consensus 226 ~~~~~C~ICle~~~~-~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l~~ 277 (283)
...+.|..|-..+.. +... ...=+..||..|....+.....|-.|...|..
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hhCCCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 345788888877752 2111 12456789999988877665579999887764
No 186
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.52 E-value=29 Score=20.28 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=7.2
Q ss_pred CCCCCccccee
Q 023376 266 GDCPYCRRNIV 276 (283)
Q Consensus 266 ~tCPlCR~~l~ 276 (283)
..||+|+..++
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 35788877654
No 187
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.14 E-value=91 Score=21.32 Aligned_cols=36 Identities=25% Similarity=0.684 Sum_probs=20.3
Q ss_pred CcCccccCccCCCCeeEEcCCCCccChhhHHHHHhcCCCCCCcccce
Q 023376 229 LDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNI 275 (283)
Q Consensus 229 ~~C~ICle~~~~~~~l~~LPCgH~FH~~CI~~WL~~~~tCPlCR~~l 275 (283)
..|..|-..+... .+ ..-+..||..|+ .|-.|...|
T Consensus 16 ~~C~~C~~~I~~~-~v--~a~~~~~H~~CF--------~C~~C~~~L 51 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GV--TYRDQPWHRECL--------VCTGCQTPL 51 (80)
T ss_dssp CCCTTTCCCCCSC-CE--ESSSSEECTTTC--------BCSSSCCBC
T ss_pred CcCCCCCCEecCc-EE--EECCchhhhhhC--------CcccCCCcC
Confidence 4577776666532 22 245666776663 466666555
Done!