BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023377
         (283 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KT9|A Chain A, Solution Nmr Structure Of Probable 30s Ribosomal Protein
           Psrp-3 (Ycf65-Like Protein) From Synechocystis Sp.
           (Strain Pcc 6803), Northeast Structural Genomics
           Consortium Target Target Sgr46
          Length = 116

 Score = 28.1 bits (61), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 96  DPLGWKNWLIDKD---ISQEASSLSSFCQDVRNLDKLYSLIIEQGK 138
           D L  K+W+ + D   +  +A+ + +F QD++N +K  S+   QGK
Sbjct: 53  DELEAKHWIAEADRINVLNQATEVINFWQDLKNQNKQISMAEAQGK 98


>pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris
 pdb|1AX4|B Chain B, Tryptophanase From Proteus Vulgaris
 pdb|1AX4|C Chain C, Tryptophanase From Proteus Vulgaris
 pdb|1AX4|D Chain D, Tryptophanase From Proteus Vulgaris
          Length = 467

 Score = 27.3 bits (59), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 66  SPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQE 112
           S + Y+DLL   G +  S H W  ++       G +N+   KD ++E
Sbjct: 41  SSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKE 87


>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
           Domain
          Length = 168

 Score = 27.3 bits (59), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)

Query: 101 KNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQG 137
           K+ L+D+ I +      SFC   RNLDK +S I   G
Sbjct: 97  KDLLVDQTIEK-----VSFCAPDRNLDKAFSYICRDG 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,864,264
Number of Sequences: 62578
Number of extensions: 301104
Number of successful extensions: 827
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 4
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)