BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023377
(283 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4IQJ2|ELP5_ARATH Elongator complex protein 5 OS=Arabidopsis thaliana GN=ELP5 PE=1
SV=1
Length = 374
Score = 285 bits (730), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/255 (56%), Positives = 193/255 (75%), Gaps = 6/255 (2%)
Query: 1 MADTICRTLRDGGLEGEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVV 60
MA++I R LRDGG EGE APALTI+++ ASPFG DV Y+LT LS+ ILAGKS S+GLV+
Sbjct: 1 MAESIFRKLRDGGEEGELAPALTIEETVASPFGLDVSGYLLTNLSSSILAGKSSSQGLVL 60
Query: 61 VAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASS--LSS 118
+ +SRSPSFY+ LLK++GI ++SS WI ILDCYTDPLGW ID+ + + L
Sbjct: 61 ITFSRSPSFYLQLLKQKGIVVSSSSKWIRILDCYTDPLGW----IDQSSTSFSEGSSLIK 116
Query: 119 FCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASISSVAGILSNLRSHD 178
+ V +L KL+S IIE G+ L+G GK RF +AIDSV+E++RH+++ V+G+L++LRSH
Sbjct: 117 LHKCVSDLKKLFSSIIEAGRELVGTGKTRFCVAIDSVNELLRHSAMPLVSGLLTDLRSHA 176
Query: 179 QVSSIFWLLHSDLHEIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGK 238
Q+SS+FW L++DLH+ K T+ LEY+S+M A++EP ++ GQR LENL + Q+F KG+
Sbjct: 177 QISSVFWSLNTDLHQEKVTNALEYISTMKANLEPLCPSSDGQRNALENLFSVHQDFGKGR 236
Query: 239 FHVRFKRRNGRVRVM 253
FHVRFK R GRVRVM
Sbjct: 237 FHVRFKLRKGRVRVM 251
>sp|A1A5V9|ELP5_DANRE Elongator complex protein 5 OS=Danio rerio GN=elp5 PE=2 SV=1
Length = 296
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 19/127 (14%)
Query: 88 IHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDR 147
+H + DPLGW+ SSF + LI + Q
Sbjct: 67 LHFHKGFPDPLGWRGK-------------SSFTVQQFTSQHITQLIRD------SQPAKA 107
Query: 148 FSIAIDSVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMV 207
+ +DS+S ++RH V L LR V +I LLHSDLH ++ +L+S V
Sbjct: 108 SVLVVDSLSLVLRHHDPVIVCQSLQELRKGGVVKTIIGLLHSDLHLQGIVGIVCHLASTV 167
Query: 208 ASVEPFN 214
SV P N
Sbjct: 168 ISVAPTN 174
>sp|B9MR57|GLYA_CALBD Serine hydroxymethyltransferase OS=Caldicellulosiruptor bescii
(strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=glyA PE=3
SV=1
Length = 415
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 14 LEGEHAPALTIKDSKASP--FGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYV 71
L EH P L + + A P F F + ++ Y++ + GLV SP Y
Sbjct: 161 LAKEHRPKLILAGASAYPRVIDFKKFREIADEVGAYLMVDMAHIAGLVAAGLHPSPVEYA 220
Query: 72 DLLKR---------RGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSF--- 119
D + RG I + ++D P G + ++ I+ +A +L
Sbjct: 221 DFVTTTTHKTLRGPRGGLILCKEKYAKLIDKSIFP-GIQGGPLEHVIAAKAVALKEAMTE 279
Query: 120 ------CQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAID 153
Q ++N L + +IE+G L+ G D + +D
Sbjct: 280 EFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVD 319
>sp|A4XL61|GLYA_CALS8 Serine hydroxymethyltransferase OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA
PE=3 SV=1
Length = 417
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 21/160 (13%)
Query: 14 LEGEHAPALTIKDSKASP--FGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYV 71
L EH P L + + A P F F + ++ Y++ + GLV SP Y
Sbjct: 163 LAKEHRPKLILAGASAYPRIIDFKKFREIADEVGAYLMVDMAHIAGLVAAGLHPSPVEYA 222
Query: 72 DLLKR---------RGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSF--- 119
D + RG I + ++D P G + ++ I+ +A +L
Sbjct: 223 DFVTTTTHKTLRGPRGGLILCKEKYAKLIDKSIFP-GIQGGPLEHVIAAKAVALKEAMTE 281
Query: 120 ------CQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAID 153
Q ++N L +IE+G L+ G D + +D
Sbjct: 282 EFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVD 321
>sp|Q4R8N2|LIN9_MACFA Protein lin-9 homolog OS=Macaca fascicularis GN=LIN9 PE=2 SV=1
Length = 542
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 105 IDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI 164
++KD+++ + +C Y L +QG Q D + E+VRHA+
Sbjct: 398 LNKDLNKVLHKVQQYC---------YELAPDQGLQPADQPTDMRRRCEEEAQEIVRHANS 448
Query: 165 SSVAGILSNLRSHDQVSSIFWLL--------HSDLHEIKFTSVLEYLSSMVASVEPFNQA 216
S+ + N D +S + +L DL+ +F S+ + L+ + ++++ N +
Sbjct: 449 STGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNIS 508
Query: 217 AFGQRVDL 224
F V++
Sbjct: 509 CFQNNVEI 516
>sp|Q5TKA1|LIN9_HUMAN Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1
Length = 542
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 105 IDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI 164
++KD+++ + +C Y L +QG Q D + E+VRHA+
Sbjct: 398 LNKDLNKVLHKVQQYC---------YELAPDQGLQPADQPTDMRRRCEEEAQEIVRHANS 448
Query: 165 SSVAGILSNLRSHDQVSSIFWLL--------HSDLHEIKFTSVLEYLSSMVASVEPFNQA 216
S+ + N D +S + +L DL+ +F S+ + L+ + ++++ N +
Sbjct: 449 STGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNIS 508
Query: 217 AFGQRVDL 224
F V++
Sbjct: 509 CFQNNVEI 516
>sp|Q9UMZ2|SYNRG_HUMAN Synergin gamma OS=Homo sapiens GN=SYNRG PE=1 SV=2
Length = 1314
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 14 LEGEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGK---SQSRGL---VVVAYSRSP 67
+ G+H PA I+D K + FG N+ ++ L++Y + + +Q R L V+ A S SP
Sbjct: 861 VSGQHPPAADIEDLKYAAFGSYSSNFAVSTLTSYDWSDRDDATQGRKLSPFVLSAGSGSP 920
Query: 68 SFYVDLLKRRGIDIASSHD 86
S +L+++ SS +
Sbjct: 921 S-ATSILQKKETSFGSSEN 938
>sp|Q9UB00|GLCM4_CAEEL Putative glucosylceramidase 4 OS=Caenorhabditis elegans GN=gba-4
PE=3 SV=2
Length = 519
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 44 LSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNW 103
L+ AG + G + ++SR+ + DL+K G + DW +ILD P KN
Sbjct: 358 LATEACAGYFPADGPKLGSWSRAEQYANDLIKDMGNWVGGWVDWNYILDLQGGPNLAKN- 416
Query: 104 LIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVS 156
+D I A++ + Q + ++ +S ++ G +G S+ ++ +S
Sbjct: 417 FVDSTIIVNATAQEYYKQPIWHVMAQFSKFVKPGAIRVGINIIEKSVDVEGLS 469
>sp|B1HM45|GLYA_LYSSC Serine hydroxymethyltransferase OS=Lysinibacillus sphaericus
(strain C3-41) GN=glyA PE=3 SV=1
Length = 413
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 21/150 (14%)
Query: 17 EHAPALTIKDSKASP--FGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLL 74
EH P L + + A P F F + ++ Y + + GLV V +SP Y D +
Sbjct: 163 EHKPKLIVAGASAYPREIDFSKFREIADEVGAYFMVDMAHIAGLVAVGEHQSPVPYADFV 222
Query: 75 KR---------RGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSS------- 118
RG I +S +W L+ P G + + I+ +A +
Sbjct: 223 TSTTHKTLRGPRGGLILASKEWEQKLNKSVFP-GIQGGPLMHVIAAKAVAFGEVLQPEFK 281
Query: 119 -FCQDVR-NLDKLYSLIIEQGKGLIGQGKD 146
+ + ++ N L ++I +G ++ G D
Sbjct: 282 DYAKQIKLNAKALAEVLIAEGVEIVSGGTD 311
>sp|B4U198|GATB_STREM Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Streptococcus equi subsp. zooepidemicus (strain
MGCS10565) GN=gatB PE=3 SV=1
Length = 479
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 26/167 (15%)
Query: 94 YTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAID 153
+ +P+G+ W+ DI+ E S ++ +E+ G G D +S +D
Sbjct: 95 FDEPIGYNGWI---DITLEDGSTKKI--------RIERAHLEEDAGKNTHGTDGYSY-VD 142
Query: 154 SVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVA----S 209
+ V I S A ++RS ++ + L + + V SM S
Sbjct: 143 LNRQGVPLIEIVSEA----DMRSPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANIS 198
Query: 210 VEPFNQAAFGQRVDLENLSMLEQNFRKG-KFHV----RFKRRNGRVR 251
+ P+ Q AFG + +L+NL+ N RKG +F V + R G +R
Sbjct: 199 LRPYGQEAFGTKTELKNLNSF-SNVRKGLEFEVERQAKILRSGGVIR 244
>sp|O66851|MTAD_AQUAE 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Aquifex
aeolicus (strain VF5) GN=mtaD PE=3 SV=1
Length = 430
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 137 GKGLIGQGK----DRFSIAIDSVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLH 192
GK ++G+ K + IA S + M H S++ + G+ ++L HD + + W L +
Sbjct: 33 GKNIVGEAKYTINGKGKIAFPSFANMHTHISMTLLRGLGADLPLHDWLQKVIWPLEGEFV 92
Query: 193 EIKF 196
+F
Sbjct: 93 SPEF 96
>sp|C0ME96|GATB_STRS7 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Streptococcus equi subsp. zooepidemicus (strain H70)
GN=gatB PE=3 SV=1
Length = 479
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 26/167 (15%)
Query: 94 YTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAID 153
+ +P+G+ W+ DI+ E S ++ +E+ G G D +S +D
Sbjct: 95 FDEPIGYNGWI---DITLEDGSTKKI--------RIERAHLEEDAGKNTHGTDGYSY-VD 142
Query: 154 SVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVA----S 209
+ V I S A ++RS ++ + L + + V SM S
Sbjct: 143 LNRQGVPLIEIVSEA----DMRSPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANIS 198
Query: 210 VEPFNQAAFGQRVDLENLSMLEQNFRKG-KFHV----RFKRRNGRVR 251
+ P+ Q AFG + +L+NL+ N RKG +F V + R G +R
Sbjct: 199 LRPYGQEAFGTKTELKNLNSF-SNVRKGLEFEVERQAKILRSGGVIR 244
>sp|C0M7E9|GATB_STRE4 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Streptococcus equi subsp. equi (strain 4047) GN=gatB
PE=3 SV=1
Length = 479
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 26/167 (15%)
Query: 94 YTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAID 153
+ +P+G+ W+ DI+ E S ++ +E+ G G D +S +D
Sbjct: 95 FDEPIGYNGWI---DITLEDGSTKKI--------RIERAHLEEDAGKNTHGTDGYSY-VD 142
Query: 154 SVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVA----S 209
+ V I S A ++RS ++ + L + + V SM S
Sbjct: 143 LNRQGVPLIEIVSEA----DMRSPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANIS 198
Query: 210 VEPFNQAAFGQRVDLENLSMLEQNFRKG-KFHV----RFKRRNGRVR 251
+ P+ Q AFG + +L+NL+ N RKG +F V + R G +R
Sbjct: 199 LRPYGQEAFGTKTELKNLNSF-SNVRKGLEFEVERQAKILRSGGVIR 244
>sp|Q4KK14|GSH1_PSEF5 Glutamate--cysteine ligase OS=Pseudomonas fluorescens (strain Pf-5
/ ATCC BAA-477) GN=gshA PE=3 SV=1
Length = 532
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 144 GKDRFSIAIDSVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYL 203
G D S A+D+ V+ +S++ A +L+ + H + + F L S H EY
Sbjct: 429 GSDVHSKALDAQLAKVKDSSLTPSAQVLAAMSEHKESFTQFSLRQSQAHA-------EYF 481
Query: 204 SSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHV 241
S S E R LE + LEQN G F V
Sbjct: 482 RSQTLSKEEQAAFEEAARKSLEQQTELEQN-EVGDFDV 518
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,132,976
Number of Sequences: 539616
Number of extensions: 3850591
Number of successful extensions: 9173
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 9165
Number of HSP's gapped (non-prelim): 21
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)