Query 023377
Match_columns 283
No_of_seqs 61 out of 63
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8j_B Elongator complex prote 98.7 5.8E-08 2E-12 89.7 11.7 178 19-251 22-216 (270)
2 4a8j_C Elongator complex prote 97.9 0.00025 8.5E-09 66.0 15.7 172 15-217 31-235 (280)
3 3bs4_A Uncharacterized protein 97.9 0.00024 8.1E-09 64.7 13.6 165 32-212 33-213 (260)
4 2zts_A Putative uncharacterize 95.9 0.21 7.3E-06 41.5 13.5 172 16-211 26-206 (251)
5 2dr3_A UPF0273 protein PH0284; 94.5 0.52 1.8E-05 39.2 11.8 142 53-212 49-196 (247)
6 3bh0_A DNAB-like replicative h 94.4 0.35 1.2E-05 43.8 11.3 65 148-213 183-266 (315)
7 2w0m_A SSO2452; RECA, SSPF, un 92.8 2.2 7.6E-05 34.7 12.5 138 54-212 50-191 (235)
8 2i1q_A DNA repair and recombin 92.3 0.35 1.2E-05 43.2 7.6 125 56-212 143-290 (322)
9 2z43_A DNA repair and recombin 90.3 0.76 2.6E-05 41.5 7.7 127 55-212 141-289 (324)
10 4a8j_A Elongator complex prote 89.9 0.93 3.2E-05 43.3 8.2 89 125-216 199-295 (361)
11 2cvh_A DNA repair and recombin 89.8 2.6 8.7E-05 34.4 9.9 127 53-213 43-185 (220)
12 2q6t_A DNAB replication FORK h 89.0 4 0.00014 38.5 11.8 30 54-83 228-259 (444)
13 3bgw_A DNAB-like replicative h 87.7 3.6 0.00012 39.3 10.7 52 16-74 193-244 (444)
14 1q57_A DNA primase/helicase; d 86.8 7.1 0.00024 37.2 12.2 26 55-80 271-298 (503)
15 2r6a_A DNAB helicase, replicat 82.9 11 0.00039 35.4 11.6 66 148-214 315-400 (454)
16 3cmu_A Protein RECA, recombina 81.5 1.8 6.2E-05 49.5 6.3 120 52-212 59-202 (2050)
17 1xp8_A RECA protein, recombina 78.9 5.1 0.00018 37.5 7.6 119 54-213 101-243 (366)
18 1v5w_A DMC1, meiotic recombina 75.1 17 0.00057 33.1 9.7 39 54-92 155-195 (343)
19 2ehv_A Hypothetical protein PH 63.9 34 0.0012 28.0 8.5 139 53-211 57-206 (251)
20 3cmw_A Protein RECA, recombina 59.3 9.9 0.00034 42.9 5.5 118 53-211 60-201 (1706)
21 1u94_A RECA protein, recombina 59.3 22 0.00077 32.9 7.2 26 53-80 89-114 (356)
22 1n0w_A DNA repair protein RAD5 57.3 35 0.0012 27.9 7.4 28 54-81 57-86 (243)
23 3lda_A DNA repair protein RAD5 54.4 95 0.0032 29.2 10.8 127 54-213 211-363 (400)
24 2zr9_A Protein RECA, recombina 52.9 46 0.0016 30.6 8.1 63 148-212 141-229 (349)
25 3cmw_A Protein RECA, recombina 49.3 16 0.00055 41.3 5.1 133 32-212 395-551 (1706)
26 3cmu_A Protein RECA, recombina 45.0 1.1E+02 0.0037 35.4 10.9 119 53-212 409-551 (2050)
27 3hr8_A Protein RECA; alpha and 34.8 57 0.002 30.4 5.8 65 148-212 141-229 (356)
28 2jrp_A Putative cytoplasmic pr 29.1 15 0.00051 28.2 0.6 24 259-282 51-74 (81)
29 4dm9_A Ubiquitin carboxyl-term 21.1 67 0.0023 28.5 3.4 32 61-97 9-41 (228)
30 1xd3_A Ubiquitin carboxyl-term 20.5 79 0.0027 28.0 3.7 32 61-97 7-39 (230)
31 2wdt_A Ubiquitin carboxyl-term 20.2 74 0.0025 28.3 3.5 31 61-97 8-39 (232)
32 1gwm_A NCP1, non-catalytic pro 20.1 68 0.0023 26.8 2.9 43 205-255 36-78 (153)
No 1
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=98.75 E-value=5.8e-08 Score=89.67 Aligned_cols=178 Identities=14% Similarity=0.161 Sum_probs=113.3
Q ss_pred CCceeecccCCCCchhhHHHHHHHHHHHHHHhhccccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCC
Q 023377 19 APALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPL 98 (283)
Q Consensus 19 ap~l~i~Dsl~~~~g~~~~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ySDPL 98 (283)
.|++++.|||+-++ ..+.+-++. ..+.. .+...|.+|.||---. =.|. -+++||..
T Consensus 22 SPltLvLDSLeQsA-~pLi~E~i~----rak~~-~~k~~IIyvSFETl~k-------P~~a--------d~FI~a~~--- 77 (270)
T 4a8j_B 22 SPFILCLDSIAQTS-YKLIQEFVH----QSKSK-GNEYPIVYISFETVNK-------PSYC--------TQFIDATQ--- 77 (270)
T ss_dssp CSEEEEEEBTTBCS-HHHHHHHHH----HHHHT-SCCCCEEEEESSCCSC-------CTTC--------SEEEETTS---
T ss_pred CCeEEEeecccccC-hHHHHHHHH----HHhhc-cCCCcEEEEEeecccC-------CCCC--------CeeeEcCC---
Confidence 79999999999885 544444433 22211 1344599999985321 0012 23666432
Q ss_pred CCcccccCCccccccccccccccchhhhhHHHHHHHHhccCccCCCCCcEEEEEechhHHHHhcChHHHHHHHHhhhcCC
Q 023377 99 GWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASISSVAGILSNLRSHD 178 (283)
Q Consensus 99 GW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~si~e~~r~~~~~~k~~~tVaIDSLS~LL~h~s~~~vc~lL~~Lr~~~ 178 (283)
.. +..+...|.....+.....+.+..|+||||..++. ..+.++++.+-+ |
T Consensus 78 ---ks----------------------l~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~----~~L~~FlsSi~s-P 127 (270)
T 4a8j_B 78 ---MD----------------------FVHLVKQIISYLPAATATQAKKHMVIIDSLNYIST----EYITRFLSEIAS-P 127 (270)
T ss_dssp ---SC----------------------HHHHHHHHHHTCC-----CCCCEEEEESCGGGSCG----GGHHHHHHHHCC-T
T ss_pred ---CC----------------------HHHHHHHHHHhCCCccCCCCcceEEEEecCcchhh----hhHHHHHHHhhc-C
Confidence 21 12222233333321111113348999999999986 578888888885 5
Q ss_pred ceeEEEeeeccccc-------------chhhHhHHhhhheeEEEeecCCcccccccccchhhhhh----hccccceeEEE
Q 023377 179 QVSSIFWLLHSDLH-------------EIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSML----EQNFRKGKFHV 241 (283)
Q Consensus 179 ~vssVl~LLHsDLH-------------e~~~v~ALe~LSstvvtv~P~~~~~~~~~~~~~~~~~l----~~n~~k~~~~v 241 (283)
-.++++--|.|+. .|....-|.|||+++++|.|...+..-.|.--+.++-+ .-|...=++.+
T Consensus 128 -~~sLv~vYH~DvP~~~~~~~~~~n~y~Ps~LtLL~ylATTIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~l 206 (270)
T 4a8j_B 128 -HCTMVATYHKDIKDENRTVIPDWNNNYPDKLTLLQFMATTIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRL 206 (270)
T ss_dssp -TEEEEEEEETTSCCC------CTTBCCCCHHHHHHHHCSEEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEE
T ss_pred -CcEEEEEecCCCCCCCccccccccCCCCChHHHHHHhhhheEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEE
Confidence 4589999999974 56677889999999999999988775444322233322 45777778899
Q ss_pred EEeccCCcee
Q 023377 242 RFKRRNGRVR 251 (283)
Q Consensus 242 r~KrRnGRV~ 251 (283)
..||++||=.
T Consensus 207 tnrRKSGRsl 216 (270)
T 4a8j_B 207 VNKRKSGRSL 216 (270)
T ss_dssp EEECTTSCEE
T ss_pred EeccccCcce
Confidence 9999999953
No 2
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=97.95 E-value=0.00025 Score=65.97 Aligned_cols=172 Identities=13% Similarity=0.168 Sum_probs=110.6
Q ss_pred cC-CCCCceeecccCCCCchhhHHHHHHHHHHHHHHhhc--------------cccceeEEEEeecChHHHHHHHhhcCc
Q 023377 15 EG-EHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGK--------------SQSRGLVVVAYSRSPSFYVDLLKRRGI 79 (283)
Q Consensus 15 ~g-e~ap~l~i~Dsl~~~~g~~~~~h~~~~l~s~i~a~~--------------~q~~~Vhvl~fe~Spe~y~~~lk~~G~ 79 (283)
++ +..-+++|..++.+.. +|++..+.....-|. .....|+++.|-+.+++|.+.+||-|+
T Consensus 31 ~~~~~~~L~liT~~~gTsp-----~WLin~lves~L~G~~~~~n~~~~~~~~~~~~~~Vv~~SF~~~~~fy~~~~~Klgi 105 (280)
T 4a8j_C 31 QDSNSHNLFFITHQSCTQP-----LWMINALVETHVLGSPSSLNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKI 105 (280)
T ss_dssp TSSSCCEEEEEEECTTSCC-----HHHHHHHHHHHHHSSCHHHHCC----CCCCCCCEEEEEESSSCHHHHHHHHHHTTC
T ss_pred CCCCCceEEEEccccCCCh-----HHHHHHHHHHHhcCCcccccccccccccCCCCceEEEEEeecCHHHHHHHHHHhCC
Confidence 55 6777888999885443 233333322222111 133579999999999999999999999
Q ss_pred CccCCCCeEEEEeccCCCCCCccc-ccCCccccccccccccccchhhhhHHHHHHHHhccCccCCCCCcEEEEEechhHH
Q 023377 80 DIASSHDWIHILDCYTDPLGWKNW-LIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEM 158 (283)
Q Consensus 80 d~~s~~~ri~i~D~ySDPLGW~~~-~~~~~~~~~~s~~~~~~~~v~~L~sl~~si~e~~r~~~~~~k~~~tVaIDSLS~L 158 (283)
|. .++.++|||||.. .++ .. .+ .. +..+++.+++..++.... + +.+|+||..-.|
T Consensus 106 dl----~~f~fvD~~tdl~--~~~~~~--kp---~~------~~l~~v~~~f~~~i~~~~------~-~~vlIldqpdlL 161 (280)
T 4a8j_C 106 PS----NNYNVLDFLSDFI--VNNIHN--KP---RD------KILSDVLAKFSAAIQNNP------T-DTIVIIEQPELL 161 (280)
T ss_dssp CG----GGEEEEESSTTHH--HHHTTT--CC---HH------HHHHHHHHHHHHHHHTST------T-SEEEEEECGGGH
T ss_pred Ch----hheeEEEecchhh--hhcccC--Cc---ch------hhhHHHHHHHhhhhhccC------C-CeEEEEcChHHH
Confidence 95 5799999999998 111 01 00 00 012455555555444321 2 379999999888
Q ss_pred HHh---cChHHH-HHHHHhhhcCCceeEEEeeecccc---cc----------hhhHhHHhhhheeEEEeecCCccc
Q 023377 159 VRH---ASISSV-AGILSNLRSHDQVSSIFWLLHSDL---HE----------IKFTSVLEYLSSMVASVEPFNQAA 217 (283)
Q Consensus 159 L~h---~s~~~v-c~lL~~Lr~~~~vssVl~LLHsDL---He----------~~~v~ALe~LSstvvtv~P~~~~~ 217 (283)
|-- ....++ -..|..|++... ..|+.+ ..|. |+ ..++-.+-|.|.++++|.|+.-+-
T Consensus 162 La~t~~it~~~L~~~~I~~L~k~~~-~lvvt~-saD~pli~~~~~t~~~~e~a~f~~~l~H~A~~visLrpL~TG~ 235 (280)
T 4a8j_C 162 LSLVSGLTCSELNNKFITPLLRQCK-VLIIVS-NSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGF 235 (280)
T ss_dssp HHHSTTCCHHHHHHHTHHHHHHTCS-EEEEEE-ECGGGCCSSCCHHHHTHHHHHHHHHHHHHCSEEEEEECCCC--
T ss_pred HHhccCCCHHHHHHHHHHHHHHhcc-eEEEEe-ccCccccccCCCCchHHHHHHHHHHHHHHhheEEeecccCCcc
Confidence 774 456666 888899987432 223332 3333 31 357788999999999999976543
No 3
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=97.85 E-value=0.00024 Score=64.68 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=101.1
Q ss_pred chhhHHHHHHHHHHHHHHhhccccceeEEEEeecChHHHHHHHhhcCcCccCC--CCeEEEEeccCCCCCCcccccCCcc
Q 023377 32 FGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDI 109 (283)
Q Consensus 32 ~g~~~~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~--~~ri~i~D~ySDPLGW~~~~~~~~~ 109 (283)
+|..+..+|+ .++..+++.+.+++||-+|++++.-++..|+|.+.. +.++.++|.|++..++......
T Consensus 33 ~~~~l~~qfl-------~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~~~~~~g~l~i~d~~~~~~~~~~~~~~--- 102 (260)
T 3bs4_A 33 RGKDILFYIL-------SRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVIKYLENHRLAIVDTFGSFHGIKATMPG--- 102 (260)
T ss_dssp CHHHHHHHHH-------HHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHHHHHHTTSEEEECHHHHHHTC---CTT---
T ss_pred cHHHHHHHHH-------HHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHHHHhhCCcEEEEEcccccccccccccc---
Confidence 4555445553 357788999999999999999999999999997641 3579999998855544332000
Q ss_pred ccccccccccccchhhhhHHHHHHHHhccC---ccC-CCCCcEEEEEechhHHHHhcChHHHHHHHHhhh----------
Q 023377 110 SQEASSLSSFCQDVRNLDKLYSLIIEQGKG---LIG-QGKDRFSIAIDSVSEMVRHASISSVAGILSNLR---------- 175 (283)
Q Consensus 110 ~~~~s~~~~~~~~v~~L~sl~~si~e~~r~---~~~-~~k~~~tVaIDSLS~LL~h~s~~~vc~lL~~Lr---------- 175 (283)
--+.+..+ ++..+-.....+++..|+ ... -+..|+.++||||+.+..-.+....-+.+.++.
T Consensus 103 v~~~~~e~----d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl~~~~~~~~~~~~~~~ll~~~~~~~~~~ 178 (260)
T 3bs4_A 103 VWYLEGML----SSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGYLEVFTPEETLRYLETSAEVRYGHPAYK 178 (260)
T ss_dssp EECCCSCC----CTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGGGGTSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred eecccccC----CHHHHHHHHHHHHHhhccccchhhccCCceEEEEEeecchHHHHhChhhHHHHHHHHHHhhhhHHHHh
Confidence 00000001 233332224455554210 011 123457788888887777666655544444442
Q ss_pred cCCceeEEEeeecccccchhhHhHHhhhheeEEEeec
Q 023377 176 SHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVASVEP 212 (283)
Q Consensus 176 ~~~~vssVl~LLHsDLHe~~~v~ALe~LSstvvtv~P 212 (283)
+...+..++ ++. |.+.+.....+.++|-.||.+.-
T Consensus 179 ~~~~~ttil-~~~-~~~~~~~~~~l~~laD~VI~lr~ 213 (260)
T 3bs4_A 179 KYPRGTNFW-LWE-GVKDKRVLLSVYRRADYVLKTRS 213 (260)
T ss_dssp SSCCCEEEE-EEE-SCSCHHHHHHHHHHCSEEEEEEE
T ss_pred ccCCcEEEE-EEC-CCcccccccceEEEeeEEEEEEE
Confidence 214454444 455 78787778899999999999954
No 4
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.87 E-value=0.21 Score=41.54 Aligned_cols=172 Identities=13% Similarity=0.074 Sum_probs=83.4
Q ss_pred CCCCCceeecccCCCCchhhHHHHHHHHHHHHHHhhccccceeEEEEeecChHHHHHHHhhcCcCccC--CCCeEEEEec
Q 023377 16 GEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIAS--SHDWIHILDC 93 (283)
Q Consensus 16 ge~ap~l~i~Dsl~~~~g~~~~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s--~~~ri~i~D~ 93 (283)
|=+++.+++----...+=+.+..+++. .+.+.+++.|.++.+|-+++...+-+.+.|.+.+. ...++.+.|.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~------~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 99 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY------KGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDG 99 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH------HHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH------HHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhh
Confidence 445554444333333343444444432 12334577899999999999999988887776443 2346889998
Q ss_pred cCCCCCCcccccCCccccccccccccccchhhhhHHHHHHHHhccCccCCCCCcEEEEEechhHHHHhcC-hHHHHHHHH
Q 023377 94 YTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHAS-ISSVAGILS 172 (283)
Q Consensus 94 ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~si~e~~r~~~~~~k~~~tVaIDSLS~LL~h~s-~~~vc~lL~ 172 (283)
++...+....... ...+..+...+...+.+..+ +.++ -.|+||+++.+....+ ...+-..++
T Consensus 100 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~----~~~~-~~vviD~~~~l~~~~~~~~~~~~~~~ 162 (251)
T 2zts_A 100 VSSVVGLPSEEKF------------VLEDRFNVDNFLRYIYRVVK----AINA-KRLVIDSIPSIALRLEEERKIREVLL 162 (251)
T ss_dssp ------------------------------CCHHHHHHHHHHHHH----HTTC-SEEEEECHHHHHHHSSSGGGHHHHHH
T ss_pred HHHHhhcccchhc------------cccccccHHHHHHHHHHHHH----hcCC-cEEEEEcHHHHhhhccChHHHHHHHH
Confidence 8766543322110 00011112222333333333 1122 3789999999987553 233344444
Q ss_pred hhhcC---CceeEEEeeecc---cccchhhHhHHhhhheeEEEee
Q 023377 173 NLRSH---DQVSSIFWLLHS---DLHEIKFTSVLEYLSSMVASVE 211 (283)
Q Consensus 173 ~Lr~~---~~vssVl~LLHs---DLHe~~~v~ALe~LSstvvtv~ 211 (283)
.|.+. -.+. ++.+-|. +.......+.++++|.+++.+.
T Consensus 163 ~L~~~a~~~~i~-vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 163 KLNTILLEMGVT-TILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHCCE-EEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHcCCC-eEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 44441 1111 2222221 1112233457889999998884
No 5
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.51 E-value=0.52 Score=39.16 Aligned_cols=142 Identities=12% Similarity=0.144 Sum_probs=73.8
Q ss_pred cccceeEEEEeecChHHHHHHHhhcCcCccCC--CCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHH
Q 023377 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLY 130 (283)
Q Consensus 53 ~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~--~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~ 130 (283)
.+++.+.++.+|.++++..+-+++.|++.... ..++.+.|+|.+-.+....... +.. .+..++..+.
T Consensus 49 ~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~ 117 (247)
T 2dr3_A 49 KMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEK----------YIV-HDLTDIREFI 117 (247)
T ss_dssp HTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC--CCCS----------CBC-SCCSSHHHHH
T ss_pred hcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccccccccc----------ccc-cCccCHHHHH
Confidence 35789999999999999988888888875431 2368999987654432111000 000 0111222232
Q ss_pred HHHHHhccCccCCCCCcEEEEEechhHHHHhcChHHHHHHHHhhhc---CCceeEEEeeecccccchhh-HhHHhhhhee
Q 023377 131 SLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASISSVAGILSNLRS---HDQVSSIFWLLHSDLHEIKF-TSVLEYLSSM 206 (283)
Q Consensus 131 ~si~e~~r~~~~~~k~~~tVaIDSLS~LL~h~s~~~vc~lL~~Lr~---~~~vssVl~LLHsDLHe~~~-v~ALe~LSst 206 (283)
..+.+..+ . .++ -.|+||+++.++. ......-+.+..|.+ ... ..|+..-|..-.+... -.++++.+.+
T Consensus 118 ~~i~~~~~-~---~~~-~~vviD~~~~l~~-~~~~~~~~~l~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~~D~ 190 (247)
T 2dr3_A 118 EVLRQAIR-D---INA-KRVVVDSVTTLYI-NKPAMARSIILQLKRVLAGTG-CTSIFVSQVSVGERGFGGPGVEHGVDG 190 (247)
T ss_dssp HHHHHHHH-H---HTC-CEEEEETSGGGTT-TCGGGHHHHHHHHHHHHHHTT-CEEEEEEECC----CCC-CCHHHHSSE
T ss_pred HHHHHHHH-H---hCC-CEEEECCchHhhc-CCHHHHHHHHHHHHHHHHHCC-CeEEEEecCCCCcccccccccceeEEE
Confidence 33333332 0 123 3799999998872 222223333333332 122 2455455543221100 0036788888
Q ss_pred EEEeec
Q 023377 207 VASVEP 212 (283)
Q Consensus 207 vvtv~P 212 (283)
++.+..
T Consensus 191 vi~L~~ 196 (247)
T 2dr3_A 191 IIRLDL 196 (247)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888865
No 6
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.44 E-value=0.35 Score=43.78 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=37.0
Q ss_pred EEEEEechhHHHHhcC----hHHHHHHHHhhhc---CCceeEEEeeec--ccc----------cchhhHhHHhhhheeEE
Q 023377 148 FSIAIDSVSEMVRHAS----ISSVAGILSNLRS---HDQVSSIFWLLH--SDL----------HEIKFTSVLEYLSSMVA 208 (283)
Q Consensus 148 ~tVaIDSLS~LL~h~s----~~~vc~lL~~Lr~---~~~vssVl~LLH--sDL----------He~~~v~ALe~LSstvv 208 (283)
..|+||+|+.|-...+ ...+...++.|++ .-.+ .|+.+-| .+. ..-+-.+++|++|.+++
T Consensus 183 ~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i-~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi 261 (315)
T 3bh0_A 183 VIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDV-VVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIE 261 (315)
T ss_dssp EEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTC-EEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEE
T ss_pred eEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-eEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEE
Confidence 4899999998753211 1445555555543 1122 2444434 111 11223478999999999
Q ss_pred EeecC
Q 023377 209 SVEPF 213 (283)
Q Consensus 209 tv~P~ 213 (283)
.+...
T Consensus 262 ~L~r~ 266 (315)
T 3bh0_A 262 FLYRD 266 (315)
T ss_dssp EEEEH
T ss_pred EEecc
Confidence 99753
No 7
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.76 E-value=2.2 Score=34.67 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=72.9
Q ss_pred ccceeEEEEeecChHHHHHHHhhcCcCccCC-CCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHH
Q 023377 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASS-HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (283)
Q Consensus 54 q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~-~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~s 132 (283)
++..|.++++|.+++.....+++.|++.... ..++.++|.+....+ ...... .. +..++...+..
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~--~~~~~~~~~~~ 115 (235)
T 2w0m_A 50 DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-DQWSLV-----------NL--TPEELVNKVIE 115 (235)
T ss_dssp HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC-----CTTBCS-----------SC--CHHHHHHHHHH
T ss_pred CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccC-ceeeec-----------CC--CHHHHHHHHHH
Confidence 4668999999999998888777777775431 225778887765543 110000 00 22333332222
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHH--hcChHHHHHHHHhhhcCCceeEEEeeecccccchhhH-hHHhhhheeEEE
Q 023377 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVR--HASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFT-SVLEYLSSMVAS 209 (283)
Q Consensus 133 i~e~~r~~~~~~k~~~tVaIDSLS~LL~--h~s~~~vc~lL~~Lr~~~~vssVl~LLHsDLHe~~~v-~ALe~LSstvvt 209 (283)
..+..+ ++ ...|+||+++.++. ......+.+.|..+.+...+ .|+..-|..-.+.+.. ..+++++..++.
T Consensus 116 ~~~~~~-----~~-~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~d~vi~ 188 (235)
T 2w0m_A 116 AKQKLG-----YG-KARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNF-TIYATSQYAITTSQAFGFGVEHVADGIIR 188 (235)
T ss_dssp HHHHHC-----SS-CEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTE-EEEEEEC-----------CHHHHCSEEEE
T ss_pred HHHhhC-----CC-ceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCC-eEEEEeccCcccccccccchheeeeEEEE
Confidence 222211 22 25899999999873 22345566666666432232 4444444321222222 458889999888
Q ss_pred eec
Q 023377 210 VEP 212 (283)
Q Consensus 210 v~P 212 (283)
+.-
T Consensus 189 l~~ 191 (235)
T 2w0m_A 189 FRR 191 (235)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 8
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.35 E-value=0.35 Score=43.25 Aligned_cols=125 Identities=11% Similarity=0.069 Sum_probs=70.2
Q ss_pred ceeEEEEeecC--hHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHHH
Q 023377 56 RGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (283)
Q Consensus 56 ~~Vhvl~fe~S--pe~y~~~lk~~G~d~~s~~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~si 133 (283)
..|..+.+|.+ |+...+.+++.|+|.+..-+++.+.+.++ ..++..++..+
T Consensus 143 ~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~---------------------------~~~~~~~l~~l 195 (322)
T 2i1q_A 143 PKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN---------------------------SDMQMLFAEKI 195 (322)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSS---------------------------HHHHHHHHHTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCC---------------------------HHHHHHHHHHH
Confidence 78999999987 88888888888887543223466555321 11111222223
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhcC-----h----HHHHHHHHhhhcC---CceeEEEeeec--cccc-------
Q 023377 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHAS-----I----SSVAGILSNLRSH---DQVSSIFWLLH--SDLH------- 192 (283)
Q Consensus 134 ~e~~r~~~~~~k~~~tVaIDSLS~LL~h~s-----~----~~vc~lL~~Lr~~---~~vssVl~LLH--sDLH------- 192 (283)
.+..+. ..++ -.|+||||+.+.+..- . ..+.+.++.|++. -.+ .|+..-| .+..
T Consensus 196 ~~~~~~---~~~~-~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~-~vi~~nq~~~~~~~~~g~~~ 270 (322)
T 2i1q_A 196 EDLIQE---GNNI-KLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNC-VVLVTNQVSAKPDAFFGMAE 270 (322)
T ss_dssp HHHHHT---TCEE-EEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECEECC-------CC
T ss_pred HHHHhh---ccCc-cEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECceeecCCCCCCCCc
Confidence 333330 0223 5899999999986411 1 2356666666541 122 2222222 2222
Q ss_pred chhhHhHHhhhheeEEEeec
Q 023377 193 EIKFTSVLEYLSSMVASVEP 212 (283)
Q Consensus 193 e~~~v~ALe~LSstvvtv~P 212 (283)
.|.--.++++.+.+++.+..
T Consensus 271 ~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp EESSHHHHHHHCSEEEEEEE
T ss_pred CCCCcHHHHhcCcEEEEEEe
Confidence 23334589999999999975
No 9
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.32 E-value=0.76 Score=41.53 Aligned_cols=127 Identities=14% Similarity=0.047 Sum_probs=61.6
Q ss_pred cceeEEEEeecC--hHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHH
Q 023377 55 SRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (283)
Q Consensus 55 ~~~Vhvl~fe~S--pe~y~~~lk~~G~d~~s~~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~s 132 (283)
+..+..+.+|.+ |+...+.+++.|++.+..-+++.+.+.++ ..++..++..
T Consensus 141 ~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~---------------------------~~~~~~~l~~ 193 (324)
T 2z43_A 141 SGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN---------------------------TDHQIAIVDD 193 (324)
T ss_dssp SCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS---------------------------HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC---------------------------HHHHHHHHHH
Confidence 678999999987 88888888888887543223455554321 1111122233
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhc-----Ch----HHHHHHHHhhhcC----CceeEEEeeeccccc-------
Q 023377 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHA-----SI----SSVAGILSNLRSH----DQVSSIFWLLHSDLH------- 192 (283)
Q Consensus 133 i~e~~r~~~~~~k~~~tVaIDSLS~LL~h~-----s~----~~vc~lL~~Lr~~----~~vssVl~LLHsDLH------- 192 (283)
+.+..+. ..++ -.|+|||++.+.+.. .. ..+.+.++.|++. ....=++.-+..+..
T Consensus 194 l~~~~~~---~~~~-~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~ 269 (324)
T 2z43_A 194 LQELVSK---DPSI-KLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPT 269 (324)
T ss_dssp HHHHHHH---CTTE-EEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------------
T ss_pred HHHHHHh---ccCC-CEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCC
Confidence 3333330 0133 589999999998641 11 2356666666552 111111112222222
Q ss_pred chhhHhHHhhhheeEEEeec
Q 023377 193 EIKFTSVLEYLSSMVASVEP 212 (283)
Q Consensus 193 e~~~v~ALe~LSstvvtv~P 212 (283)
.|.--.++++.+.+++.+..
T Consensus 270 ~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 270 VAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp ------------CEEEEEEE
T ss_pred CCCchHHHHhhCcEEEEEEE
Confidence 22333479999999999975
No 10
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=89.86 E-value=0.93 Score=43.31 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHhccCccCCCCCcEEEEEechhHHHHhc----ChHHHHHHHHhhhc----CCceeEEEeeecccccchhh
Q 023377 125 NLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHA----SISSVAGILSNLRS----HDQVSSIFWLLHSDLHEIKF 196 (283)
Q Consensus 125 ~L~sl~~si~e~~r~~~~~~k~~~tVaIDSLS~LL~h~----s~~~vc~lL~~Lr~----~~~vssVl~LLHsDLHe~~~ 196 (283)
.+.+++..|.+..++ + ++.-.=|+|=||..-+... ....+-++|+.||. +.....++--++.+|-.+..
T Consensus 199 ~y~~lL~~I~~~i~~--~-~~~ilRIvI~SLgSP~wy~~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~~~~l 275 (361)
T 4a8j_A 199 PVSTILSQIEQTIKR--N-DKKLIRIVIPSLLHPAMYPPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIITPPL 275 (361)
T ss_dssp CHHHHHHHHHHHHHH--T-TTSEEEEEETTTTCTTTSCGGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTSCHHH
T ss_pred hHHHHHHHHHHHHhc--C-CCceEEEEecCCCCcccCCCcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHcChHH
Confidence 456666666666652 2 2332678898887665433 36778999999987 34444567779999999999
Q ss_pred HhHHhhhheeEEEeecCCcc
Q 023377 197 TSVLEYLSSMVASVEPFNQA 216 (283)
Q Consensus 197 v~ALe~LSstvvtv~P~~~~ 216 (283)
+.-+|+|+-+++.|+|.+..
T Consensus 276 ~~rle~l~D~vi~L~pF~~~ 295 (361)
T 4a8j_A 276 LVLLRNMFDSVINLEPFNQE 295 (361)
T ss_dssp HHHHHHHCSEEEEEEECCHH
T ss_pred HHHHHHhCcEEEEeeecCCc
Confidence 99999999999999998653
No 11
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.84 E-value=2.6 Score=34.35 Aligned_cols=127 Identities=11% Similarity=0.185 Sum_probs=68.6
Q ss_pred cccceeEEEEeec--ChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHH
Q 023377 53 SQSRGLVVVAYSR--SPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLY 130 (283)
Q Consensus 53 ~q~~~Vhvl~fe~--Spe~y~~~lk~~G~d~~s~~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~ 130 (283)
.++..+.++..|. +++.+.+.++..|++.+....++.+.+ |.++ .++...+
T Consensus 43 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------------------~~~~~~~ 95 (220)
T 2cvh_A 43 LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFT----PSDF-----------------------KEQRRVI 95 (220)
T ss_dssp HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEEC----CTTT-----------------------SHHHHHH
T ss_pred HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEe----cCCH-----------------------HHHHHHH
Confidence 4577899999988 888888877766665332122333332 2111 1122222
Q ss_pred HHHHHhccCccCCCCCcEEEEEechhHHHHhcCh-----HH---HHHHHHhhhcCCceeEEEeeecc--cc----cchhh
Q 023377 131 SLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI-----SS---VAGILSNLRSHDQVSSIFWLLHS--DL----HEIKF 196 (283)
Q Consensus 131 ~si~e~~r~~~~~~k~~~tVaIDSLS~LL~h~s~-----~~---vc~lL~~Lr~~~~vssVl~LLHs--DL----He~~~ 196 (283)
..+..+.+ + ++ -.|+||+++.++...+- .. +.+.|.++.+...+ .|+..-|. +. ..|.-
T Consensus 96 ~~~~~l~~----~-~~-~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~-~vi~~~h~~~~~~~~~~~p~~ 168 (220)
T 2cvh_A 96 GSLKKTVD----S-NF-ALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNI-PVIVINQVHFDSRTEMTKPVA 168 (220)
T ss_dssp HHHHHHCC----T-TE-EEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTC-CEEEEECSSSSCTTSSCCSCC
T ss_pred HHHHHHhh----c-CC-CEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCC-EEEEEeeEEEcCCCCccccCC
Confidence 22222232 2 33 58999999998865322 33 44445555432122 24433342 11 11222
Q ss_pred HhHHhhhheeEEEeecC
Q 023377 197 TSVLEYLSSMVASVEPF 213 (283)
Q Consensus 197 v~ALe~LSstvvtv~P~ 213 (283)
...+++++..++.+...
T Consensus 169 ~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 169 EQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CHHHHHTSSEEEEEEEC
T ss_pred CcceeecCcEEEEEEEe
Confidence 34889999999999764
No 12
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.95 E-value=4 Score=38.48 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=21.3
Q ss_pred ccceeEEEEeecChHHHHHHH--hhcCcCccC
Q 023377 54 QSRGLVVVAYSRSPSFYVDLL--KRRGIDIAS 83 (283)
Q Consensus 54 q~~~Vhvl~fe~Spe~y~~~l--k~~G~d~~s 83 (283)
+++.|.++.+|-++++...-+ ...|++...
T Consensus 228 ~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~ 259 (444)
T 2q6t_A 228 EGVGVGIYSLEMPAAQLTLRMMCSEARIDMNR 259 (444)
T ss_dssp TCCCEEEEESSSCHHHHHHHHHHHHTTCCTTT
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHcCCCHHH
Confidence 467899999999999877632 244666433
No 13
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.72 E-value=3.6 Score=39.31 Aligned_cols=52 Identities=6% Similarity=-0.095 Sum_probs=29.9
Q ss_pred CCCCCceeecccCCCCchhhHHHHHHHHHHHHHHhhccccceeEEEEeecChHHHHHHH
Q 023377 16 GEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLL 74 (283)
Q Consensus 16 ge~ap~l~i~Dsl~~~~g~~~~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~Spe~y~~~l 74 (283)
|=+++.+.+----...+=+.+..+++.. .+.+++.|.++.+|-|+++...=+
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~-------~a~~g~~vl~fSlEms~~ql~~R~ 244 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKN-------MSDNDDVVNLHSLEMGKKENIKRL 244 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHH-------HHHTTCEEEEECSSSCTTHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHH-------HHHcCCEEEEEECCCCHHHHHHHH
Confidence 4444444443333333334444444321 222478899999999999887643
No 14
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.76 E-value=7.1 Score=37.16 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=19.2
Q ss_pred cceeEEEEeecChHHHHHHH--hhcCcC
Q 023377 55 SRGLVVVAYSRSPSFYVDLL--KRRGID 80 (283)
Q Consensus 55 ~~~Vhvl~fe~Spe~y~~~l--k~~G~d 80 (283)
++.|.++.+|-++++...=+ ...|++
T Consensus 271 g~~vl~~s~E~s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 271 GKKVGLAMLEESVEETAEDLIGLHNRVR 298 (503)
T ss_dssp CCCEEEEESSSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHcCCC
Confidence 78899999999999876632 334554
No 15
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.88 E-value=11 Score=35.45 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=37.9
Q ss_pred EEEEEechhHHHHhc-----ChHHH---HHHHHhhhcCCceeEEEeeec--c------c----ccchhhHhHHhhhheeE
Q 023377 148 FSIAIDSVSEMVRHA-----SISSV---AGILSNLRSHDQVSSIFWLLH--S------D----LHEIKFTSVLEYLSSMV 207 (283)
Q Consensus 148 ~tVaIDSLS~LL~h~-----s~~~v---c~lL~~Lr~~~~vssVl~LLH--s------D----LHe~~~v~ALe~LSstv 207 (283)
-.|+||++..+.... ....+ .+.|.+|-+.-.+ .|+.+-| . | +..-+-.+++++.|.++
T Consensus 315 ~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i-~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~v 393 (454)
T 2r6a_A 315 GMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEV-PVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIV 393 (454)
T ss_dssp CEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTC-CEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEE
T ss_pred CEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC-eEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEE
Confidence 489999999987421 23344 4445444332122 3555555 1 1 11122235899999999
Q ss_pred EEeecCC
Q 023377 208 ASVEPFN 214 (283)
Q Consensus 208 vtv~P~~ 214 (283)
+.+....
T Consensus 394 i~l~r~~ 400 (454)
T 2r6a_A 394 AFLYRDD 400 (454)
T ss_dssp EEEEETT
T ss_pred EEEeccc
Confidence 9997543
No 16
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.55 E-value=1.8 Score=49.50 Aligned_cols=120 Identities=12% Similarity=0.158 Sum_probs=70.2
Q ss_pred ccccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHH
Q 023377 52 KSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (283)
Q Consensus 52 ~~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (283)
..+++.+..+.+|.+++..+ ++..|+|.+ ++.+. +|. . ..++..++.
T Consensus 59 ~~~Ge~vlYI~tEes~~~~r--a~~lG~dl~----~i~v~----~p~----~-------------------~e~ll~il~ 105 (2050)
T 3cmu_A 59 QREGKTCAFIDAEHALDPIY--ARKLGVDID----NLLCS----QPD----T-------------------GEQALEICD 105 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHH--HHHTTCCTT----TCEEE----CCS----S-------------------HHHHHHHHH
T ss_pred hccCCceEEEEccCcchhhH--HhhhccCcc----cceec----CCC----c-------------------HHHHHHHHH
Confidence 34688999999999999887 466787733 34433 341 0 112333333
Q ss_pred HHHHhccCccCCCCCcEEEEEechhHHHHhcCh-------------HHHHHHHHhhhc----CCceeEEE-------eee
Q 023377 132 LIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI-------------SSVAGILSNLRS----HDQVSSIF-------WLL 187 (283)
Q Consensus 132 si~e~~r~~~~~~k~~~tVaIDSLS~LL~h~s~-------------~~vc~lL~~Lr~----~~~vssVl-------~LL 187 (283)
.+.+.. ++ -.|+||||+.+.+.... ..+-+.+..|.+ +....=+. +..
T Consensus 106 ~L~~~~-------~~-~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~~ak~~gitVVlTNQv~~~~g~~ 177 (2050)
T 3cmu_A 106 ALARSG-------AV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 177 (2050)
T ss_dssp HHHHHT-------CC-SEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCC
T ss_pred HHHhcc-------CC-cEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEEecccccccc
Confidence 333321 22 48999999999875321 123344444443 32111111 112
Q ss_pred cccccchhhHhHHhhhheeEEEeec
Q 023377 188 HSDLHEIKFTSVLEYLSSMVASVEP 212 (283)
Q Consensus 188 HsDLHe~~~v~ALe~LSstvvtv~P 212 (283)
+++-+.+..-.+++|++.+++.++=
T Consensus 178 fg~~~~~~gG~~l~~iaD~VI~L~r 202 (2050)
T 3cmu_A 178 FGNPETTTGGNALKFYASVRLDIRR 202 (2050)
T ss_dssp SSCCEECSSHHHHHHHEEEEEEEEE
T ss_pred cCcccccCCcchhhhhCcEEEEEEe
Confidence 3455667778899999999999953
No 17
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=78.92 E-value=5.1 Score=37.49 Aligned_cols=119 Identities=11% Similarity=0.118 Sum_probs=63.0
Q ss_pred ccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHHH
Q 023377 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (283)
Q Consensus 54 q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~si 133 (283)
++..|.++.+|.+++... +++.|+|. .++.+.| |. +..++... +
T Consensus 101 ~g~~vlyi~~E~s~~~~~--a~~~g~d~----~~l~i~~----~~-----------------------~~e~~l~~---l 144 (366)
T 1xp8_A 101 AGGTCAFIDAEHALDPVY--ARALGVNT----DELLVSQ----PD-----------------------NGEQALEI---M 144 (366)
T ss_dssp TTCCEEEEESSCCCCHHH--HHHTTCCG----GGCEEEC----CS-----------------------SHHHHHHH---H
T ss_pred CCCeEEEEECCCChhHHH--HHHcCCCH----HHceeec----CC-----------------------cHHHHHHH---H
Confidence 567899999999887654 46667773 3455443 31 11122221 1
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhcC-----------h--HHHHHHHHhhhc----CCceeEEEeeec-------c
Q 023377 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHAS-----------I--SSVAGILSNLRS----HDQVSSIFWLLH-------S 189 (283)
Q Consensus 134 ~e~~r~~~~~~k~~~tVaIDSLS~LL~h~s-----------~--~~vc~lL~~Lr~----~~~vssVl~LLH-------s 189 (283)
-++.+ ++++ -.|+|||++.+..+.. . ..+.+.|+.|.. .....=++.-+. +
T Consensus 145 ~~l~~----~~~~-~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg 219 (366)
T 1xp8_A 145 ELLVR----SGAI-DVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYG 219 (366)
T ss_dssp HHHHT----TTCC-SEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------
T ss_pred HHHHh----cCCC-CEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccC
Confidence 11222 1223 4899999999873211 1 235677777742 222221122222 2
Q ss_pred cccchhhHhHHhhhheeEEEeecC
Q 023377 190 DLHEIKFTSVLEYLSSMVASVEPF 213 (283)
Q Consensus 190 DLHe~~~v~ALe~LSstvvtv~P~ 213 (283)
|-..+.--.++++.|++++.+.-.
T Consensus 220 ~p~~~~gg~al~~~a~~rl~L~r~ 243 (366)
T 1xp8_A 220 NPETTTGGRALKFYASVRLDVRKI 243 (366)
T ss_dssp ------CHHHHHHHCSEEEEEEEE
T ss_pred CccccCCcchhhheeeEEEEEEec
Confidence 212233356899999999999654
No 18
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=75.14 E-value=17 Score=33.09 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.8
Q ss_pred ccceeEEEEeecC--hHHHHHHHhhcCcCccCCCCeEEEEe
Q 023377 54 QSRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILD 92 (283)
Q Consensus 54 q~~~Vhvl~fe~S--pe~y~~~lk~~G~d~~s~~~ri~i~D 92 (283)
++..+..+.+|.+ |+...+.+++.|++.+..-+++.+.+
T Consensus 155 ~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~ 195 (343)
T 1v5w_A 155 PGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYAR 195 (343)
T ss_dssp CCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEee
Confidence 4678999999996 88888888888887542123455544
No 19
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=63.94 E-value=34 Score=28.00 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=70.3
Q ss_pred cccceeEEEEeecChHHHHHHHhhcCcCccC--CCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHH
Q 023377 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIAS--SHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLY 130 (283)
Q Consensus 53 ~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s--~~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~ 130 (283)
.++.++.++..+.+++...+..++.|++... ...++.+.|.+..+.+...... .... +..++..+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~ 124 (251)
T 2ehv_A 57 EYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEK-----------FVLE-DRFNVDNFL 124 (251)
T ss_dssp HHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------------------------------CCHHHHH
T ss_pred hCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccccccc-----------eecc-CcccHHHHH
Confidence 4567888999999999888888878877543 1346888888766543211100 0000 011122222
Q ss_pred HHHHHhccCccCCCCCcEEEEEechhHHHHh-----cChHHHHHHHHhhhcCCceeEEEeeecccccch---hhHhHHhh
Q 023377 131 SLIIEQGKGLIGQGKDRFSIAIDSVSEMVRH-----ASISSVAGILSNLRSHDQVSSIFWLLHSDLHEI---KFTSVLEY 202 (283)
Q Consensus 131 ~si~e~~r~~~~~~k~~~tVaIDSLS~LL~h-----~s~~~vc~lL~~Lr~~~~vssVl~LLHsDLHe~---~~v~ALe~ 202 (283)
..+.+... ..+| -.|++|..+.++.. ..-..+..++..+++.+ ..|+..-| ++.+. .....+++
T Consensus 125 ~~~~~~l~----~~~p-~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g--~tii~vtH-~~~~~~~~~~~~~i~~ 196 (251)
T 2ehv_A 125 RYIYRVVK----AINA-KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMG--VTTILTTE-APDPQHGKLSRYGIEE 196 (251)
T ss_dssp HHHHHHHH----HTTC-SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHC--CEEEEEEC-CC----CCSSSSSCGG
T ss_pred HHHHHHHH----hhCC-CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCC--CeEEEEEC-CCCCCcccccccChhh
Confidence 22222222 1233 47999999999973 22234677777776532 23444444 33332 11133477
Q ss_pred hh-eeEEEee
Q 023377 203 LS-SMVASVE 211 (283)
Q Consensus 203 LS-stvvtv~ 211 (283)
++ ..++.+.
T Consensus 197 ~~aD~vi~l~ 206 (251)
T 2ehv_A 197 FIARGVIVLD 206 (251)
T ss_dssp GGCSEEEEEE
T ss_pred EeeeEEEEEe
Confidence 77 7777774
No 20
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.29 E-value=9.9 Score=42.91 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=67.9
Q ss_pred cccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHH
Q 023377 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (283)
Q Consensus 53 ~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~s 132 (283)
.+++.+..+.++.++++.+ +++.|+|. +++++. +|. ...++..++..
T Consensus 60 ~~G~~vlYI~te~~~~~l~--~~~lg~dl----~~i~i~----~p~-----------------------t~e~l~~ll~~ 106 (1706)
T 3cmw_A 60 REGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCS----QPD-----------------------TGEQALEICDA 106 (1706)
T ss_dssp HTTCCEEEECTTSCCCHHH--HHHTTCCG----GGCEEE----CCS-----------------------SHHHHHHHHHH
T ss_pred hCCCceEEEEecCccHHHH--HHhhccCc----cceeee----ccC-----------------------cHHHHHHHHHH
Confidence 4578999999999988877 46667773 335443 231 12233344344
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhcChH-------------HHHHHHHhhhc----CCceeEEEeee-------c
Q 023377 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHASIS-------------SVAGILSNLRS----HDQVSSIFWLL-------H 188 (283)
Q Consensus 133 i~e~~r~~~~~~k~~~tVaIDSLS~LL~h~s~~-------------~vc~lL~~Lr~----~~~vssVl~LL-------H 188 (283)
+.+.. ++ -.|+||||+.+.+..... .+.+++..|.+ +....=+...+ .
T Consensus 107 L~~~~-------~~-~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~~~tVIvTNqv~s~~g~~f 178 (1706)
T 3cmw_A 107 LARSG-------AV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 178 (1706)
T ss_dssp HHHHT-------CC-SEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHhcc-------CC-CEEEEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccccccccc
Confidence 33321 22 489999999988764211 23444444443 22221111112 1
Q ss_pred ccccchhhHhHHhhhheeEEEee
Q 023377 189 SDLHEIKFTSVLEYLSSMVASVE 211 (283)
Q Consensus 189 sDLHe~~~v~ALe~LSstvvtv~ 211 (283)
+|-+.+..-..++|++.+++.++
T Consensus 179 gd~~~a~~g~~l~h~ad~~I~L~ 201 (1706)
T 3cmw_A 179 GNPETTTGGNALKFYASVRLDIR 201 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEE
T ss_pred CccccccCcchhhhhCCEEEEEE
Confidence 23344555679999999999995
No 21
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=59.25 E-value=22 Score=32.93 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=18.0
Q ss_pred cccceeEEEEeecChHHHHHHHhhcCcC
Q 023377 53 SQSRGLVVVAYSRSPSFYVDLLKRRGID 80 (283)
Q Consensus 53 ~q~~~Vhvl~fe~Spe~y~~~lk~~G~d 80 (283)
.++..|.++..|-+++... .++.|++
T Consensus 89 ~~g~~vlyid~E~s~~~~~--a~~~g~~ 114 (356)
T 1u94_A 89 REGKTCAFIDAEHALDPIY--ARKLGVD 114 (356)
T ss_dssp HTTCCEEEEESSCCCCHHH--HHHTTCC
T ss_pred HCCCeEEEEeCCCCccHHH--HHHcCCC
Confidence 3567899999988776443 4566776
No 22
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=57.28 E-value=35 Score=27.89 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=21.3
Q ss_pred ccceeEEEEeec--ChHHHHHHHhhcCcCc
Q 023377 54 QSRGLVVVAYSR--SPSFYVDLLKRRGIDI 81 (283)
Q Consensus 54 q~~~Vhvl~fe~--Spe~y~~~lk~~G~d~ 81 (283)
+..++..+..+. +++...+.+++.|+++
T Consensus 57 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 86 (243)
T 1n0w_A 57 GEGKAMYIDTEGTFRPERLLAVAERYGLSG 86 (243)
T ss_dssp CSSEEEEEESSSCCCHHHHHHHHHHTTCCH
T ss_pred CCCeEEEEECCCCcCHHHHHHHHHHcCCCH
Confidence 367888888888 4777777778787774
No 23
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=54.39 E-value=95 Score=29.23 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=63.6
Q ss_pred ccceeEEEEeecC--hHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHH
Q 023377 54 QSRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (283)
Q Consensus 54 q~~~Vhvl~fe~S--pe~y~~~lk~~G~d~~s~~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (283)
++.++..+..|.+ ++......++.|+++...-.++.+.+.+. ......+..
T Consensus 211 ~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~---------------------------~~~~~~~l~ 263 (400)
T 3lda_A 211 GEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN---------------------------ADHQLRLLD 263 (400)
T ss_dssp CSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS---------------------------HHHHHHHHH
T ss_pred CCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC---------------------------hHHHHHHHH
Confidence 3566777777764 66666777777777543222344443210 001111112
Q ss_pred HHHHhccCccCCCCCcEEEEEechhHHHHhcCh------------HHHHHHHHhhhcCCceeEEEeeecc--cc------
Q 023377 132 LIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI------------SSVAGILSNLRSHDQVSSIFWLLHS--DL------ 191 (283)
Q Consensus 132 si~e~~r~~~~~~k~~~tVaIDSLS~LL~h~s~------------~~vc~lL~~Lr~~~~vssVl~LLHs--DL------ 191 (283)
.+.+..+ +.++ -.|+||+++.++...-- ..+.+.|..|.+... ..|+..-|- ..
T Consensus 264 ~~~~~l~----~~~~-~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g-itVIlv~Hv~~~~~g~~~~ 337 (400)
T 3lda_A 264 AAAQMMS----ESRF-SLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFG-VAVVVTNQVVAQVDGGMAF 337 (400)
T ss_dssp HHHHHHH----HSCE-EEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEEC----------
T ss_pred HHHHHHH----hcCC-ceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcC-CEEEEEEeecccCCccccc
Confidence 2222222 1233 57899999998764211 334555555543212 334444453 11
Q ss_pred ----cchhhHhHHhhhheeEEEeecC
Q 023377 192 ----HEIKFTSVLEYLSSMVASVEPF 213 (283)
Q Consensus 192 ----He~~~v~ALe~LSstvvtv~P~ 213 (283)
..|---..++|++.+++.+.-.
T Consensus 338 ~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 338 NPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ----------CHHHHHCSEEEEEEEC
T ss_pred cCCCccCCchhHHHHhcceEEEEEec
Confidence 1122236799999999999764
No 24
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=52.95 E-value=46 Score=30.58 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=35.6
Q ss_pred EEEEEechhHHHHhc-------C----hH--HHHHHHHhhhc----CCceeEEEeeec--ccc---c----chhhHhHHh
Q 023377 148 FSIAIDSVSEMVRHA-------S----IS--SVAGILSNLRS----HDQVSSIFWLLH--SDL---H----EIKFTSVLE 201 (283)
Q Consensus 148 ~tVaIDSLS~LL~h~-------s----~~--~vc~lL~~Lr~----~~~vssVl~LLH--sDL---H----e~~~v~ALe 201 (283)
-.|+|||++.++.+. . .+ .+.+.|+.|.. ... .|+..-| .+. + .+.--.+|+
T Consensus 141 ~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~--tVI~inh~~~~~~~~~~~p~~~~gg~~l~ 218 (349)
T 2zr9_A 141 DIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGT--TAIFINELREKIGVMFGSPETTTGGKALK 218 (349)
T ss_dssp SEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTC--EEEEEEECC-----------CCSSHHHHH
T ss_pred CEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCC--EEEEEeccccccCcccCCCcccCCchHhh
Confidence 489999999987311 0 22 45677777742 222 2333333 111 1 122246899
Q ss_pred hhheeEEEeec
Q 023377 202 YLSSMVASVEP 212 (283)
Q Consensus 202 ~LSstvvtv~P 212 (283)
+.|++++.+.-
T Consensus 219 ~~ad~~l~lrr 229 (349)
T 2zr9_A 219 FYASVRLDVRR 229 (349)
T ss_dssp HHCSEEEEEEE
T ss_pred hccceEEEEEE
Confidence 99999998754
No 25
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=49.27 E-value=16 Score=41.28 Aligned_cols=133 Identities=11% Similarity=0.135 Sum_probs=72.7
Q ss_pred chhhHHHHHHHHHHHHHHhhccccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCcccc
Q 023377 32 FGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQ 111 (283)
Q Consensus 32 ~g~~~~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ySDPLGW~~~~~~~~~~~ 111 (283)
+=+.+..|++.. ...+++.+.++.+|-+++... .++.|+|. +++.+.| |-
T Consensus 395 GKTtLaLq~a~~-------~~~~G~~vlyis~E~s~~~~~--a~~lGvd~----~~L~i~~----~~------------- 444 (1706)
T 3cmw_A 395 GKTTLTLQVIAA-------AQREGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCSQ----PD------------- 444 (1706)
T ss_dssp SHHHHHHHHHHH-------HHHTTCCEEEECTTSCCCHHH--HHHTTCCG----GGCEEEC----CS-------------
T ss_pred CHHHHHHHHHHH-------HHHhCCCeEEEEccCchHHHH--HHHcCCCH----HHeEEcC----CC-------------
Confidence 335555555432 233678999999999998864 57778874 3455533 21
Q ss_pred ccccccccccchhhhhHHHHHHHHhccCccCCCCCcEEEEEechhHHHHhc------C-------hHHHHHHHHhhhc--
Q 023377 112 EASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHA------S-------ISSVAGILSNLRS-- 176 (283)
Q Consensus 112 ~~s~~~~~~~~v~~L~sl~~si~e~~r~~~~~~k~~~tVaIDSLS~LL~h~------s-------~~~vc~lL~~Lr~-- 176 (283)
+..++.......++. .++ -.|+||||+.|.... + ...+.+.|+.|..
T Consensus 445 ----------~~e~~l~~l~~lv~~-------~~~-~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~a 506 (1706)
T 3cmw_A 445 ----------TGEQALEICDALARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506 (1706)
T ss_dssp ----------SHHHHHHHHHHHHHH-------TCC-SEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHh-------cCC-CEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 011222221222211 233 389999999987321 1 1235677777743
Q ss_pred --CCceeEEEeeecccc-------cchhhHhHHhhhheeEEEeec
Q 023377 177 --HDQVSSIFWLLHSDL-------HEIKFTSVLEYLSSMVASVEP 212 (283)
Q Consensus 177 --~~~vssVl~LLHsDL-------He~~~v~ALe~LSstvvtv~P 212 (283)
.....=++.-++.+. +.|.--++|++.|.+++.|.-
T Consensus 507 k~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R 551 (1706)
T 3cmw_A 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 551 (1706)
T ss_dssp HHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEE
T ss_pred HHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEe
Confidence 222222222233221 222234799999999999853
No 26
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=45.05 E-value=1.1e+02 Score=35.44 Aligned_cols=119 Identities=12% Similarity=0.161 Sum_probs=67.4
Q ss_pred cccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHH
Q 023377 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (283)
Q Consensus 53 ~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ySDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~s 132 (283)
.++..+.++.+|-+++... .++.|+|. +++.|.| |.. ..++......
T Consensus 409 ~~G~~vlyis~E~s~~~~~--a~~lGvd~----~~L~I~~----~~~-----------------------~e~il~~~~~ 455 (2050)
T 3cmu_A 409 REGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCSQ----PDT-----------------------GEQALEICDA 455 (2050)
T ss_dssp TTTCCEEEECTTSCCCHHH--HHHTTCCT----TTCEEEC----CSS-----------------------HHHHHHHHHH
T ss_pred hcCCeEEEEEcCCCHHHHH--HHHcCCCH----HHeEEeC----CCC-----------------------HHHHHHHHHH
Confidence 3567899999999998765 67778873 4465544 321 1122222111
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhc------C-------hHHHHHHHHhhh----cCCceeEEEeeecccc----
Q 023377 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHA------S-------ISSVAGILSNLR----SHDQVSSIFWLLHSDL---- 191 (283)
Q Consensus 133 i~e~~r~~~~~~k~~~tVaIDSLS~LL~h~------s-------~~~vc~lL~~Lr----~~~~vssVl~LLHsDL---- 191 (283)
+++. .++ -.|+||||..|..+. + ...+.+.|+.|. ......=++.-++.+.
T Consensus 456 lv~~-------~~~-~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~ 527 (2050)
T 3cmu_A 456 LARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 527 (2050)
T ss_dssp HHHH-------TCC-SEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS
T ss_pred HHHh-------cCC-cEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccccc
Confidence 1111 233 389999999887311 1 124677888884 3332222223343332
Q ss_pred ---cchhhHhHHhhhheeEEEeec
Q 023377 192 ---HEIKFTSVLEYLSSMVASVEP 212 (283)
Q Consensus 192 ---He~~~v~ALe~LSstvvtv~P 212 (283)
..|.--+++++.|++++.+.-
T Consensus 528 g~p~~psGg~ale~~ADv~l~L~R 551 (2050)
T 3cmu_A 528 GNPETTTGGNALKFYASVRLDIRR 551 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEE
T ss_pred CCCcCCCCcchhhhhCCEEEEEEe
Confidence 222234589999999998864
No 27
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=34.82 E-value=57 Score=30.39 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=35.7
Q ss_pred EEEEEechhHHHHh--cC-----------hHHHHHHHHhhhc---C-CceeEEEeeec-------ccccchhhHhHHhhh
Q 023377 148 FSIAIDSVSEMVRH--AS-----------ISSVAGILSNLRS---H-DQVSSIFWLLH-------SDLHEIKFTSVLEYL 203 (283)
Q Consensus 148 ~tVaIDSLS~LL~h--~s-----------~~~vc~lL~~Lr~---~-~~vssVl~LLH-------sDLHe~~~v~ALe~L 203 (283)
-.|+|||+..+... .. ...+++.|+.|++ . ....=++.-+. +|-..+---.+|+|+
T Consensus 141 dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~ 220 (356)
T 3hr8_A 141 DLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFY 220 (356)
T ss_dssp SEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHH
T ss_pred CeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhh
Confidence 37899999887631 11 1234555554443 2 22222222232 121123335789999
Q ss_pred heeEEEeec
Q 023377 204 SSMVASVEP 212 (283)
Q Consensus 204 Sstvvtv~P 212 (283)
+++++.++-
T Consensus 221 ~~~rl~l~k 229 (356)
T 3hr8_A 221 ATMRMEVRR 229 (356)
T ss_dssp CSEEEEEEE
T ss_pred CcEEEEEEe
Confidence 999999975
No 28
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.11 E-value=15 Score=28.24 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=19.3
Q ss_pred HhhhccchhhhhhccceeEeeecc
Q 023377 259 LYFCGECADLLYRKSSYIYFTPLL 282 (283)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~ 282 (283)
-|||..|..|.-+|.--+-|.|.|
T Consensus 51 ~yFC~~C~~LiSkkrv~f~~~~~~ 74 (81)
T 2jrp_A 51 DYFCQNGHGLISKKRVNFVISDQL 74 (81)
T ss_dssp EECCTTTTCCCCTTSSEEEECCSC
T ss_pred CeeeccCCCEeecceEEEEecchh
Confidence 799999999998887766666654
No 29
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=21.12 E-value=67 Score=28.50 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=26.7
Q ss_pred EEeecChHHHHHHHhhcCcCccCCCCeEEEEeccC-CC
Q 023377 61 VAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (283)
Q Consensus 61 l~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~yS-DP 97 (283)
+-.|..|+.|.+++++-|+. . .+.++|.|+ ||
T Consensus 9 ~pLESnP~Vft~l~~~LGv~----~-~~~f~DVysLD~ 41 (228)
T 4dm9_A 9 KPMEINPEMLNKVLSRLGVA----G-QWRFVDVLGLEE 41 (228)
T ss_dssp CCCCCSHHHHHHHHHHTTBC----S-SEEEEEECCSSH
T ss_pred eeccCCHHHHHHHHHHcCCC----C-ceEEEEeecCCH
Confidence 34689999999999999987 2 479999998 44
No 30
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=20.50 E-value=79 Score=28.05 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=26.9
Q ss_pred EEeecChHHHHHHHhhcCcCccCCCCeEEEEeccC-CC
Q 023377 61 VAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (283)
Q Consensus 61 l~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~yS-DP 97 (283)
+-.|..|+.|.+++++-|+. . .+.++|.|+ ||
T Consensus 7 ~plESnP~Vft~l~~~lGv~----~-~~~f~DVysld~ 39 (230)
T 1xd3_A 7 LPLEANPEVTNQFLKQLGLH----P-NWQFVDVYGMDP 39 (230)
T ss_dssp CCCBCCHHHHHHHHHHTTBC----T-TEEEEECCCSSH
T ss_pred ccccCCHHHHHHHHHHcCCC----c-eEEEEEeccCCH
Confidence 45799999999999999987 3 289999998 44
No 31
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=20.25 E-value=74 Score=28.30 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=26.8
Q ss_pred EEeecChHHHHHHHhhcCcCccCCCCeEEEEeccC-CC
Q 023377 61 VAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (283)
Q Consensus 61 l~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~yS-DP 97 (283)
+-.|..|+.|.+++++-|+. . +.++|.|+ ||
T Consensus 8 ~plESnP~Vft~l~~~lGv~----~--~~f~DVysld~ 39 (232)
T 2wdt_A 8 TPLESNPDSLYLYSCKLGQS----K--LKFVDIYGFNN 39 (232)
T ss_dssp CCCBCCHHHHHHHHHHHTCC----S--EEEEECCCSSH
T ss_pred eeecCCHHHHHHHHHHhCCC----C--eEEEEcccCCH
Confidence 44789999999999999988 4 89999999 54
No 32
>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain, glucomannan, cellohexaose, mannohexaose, cellulosome; HET: GLC BGC; 1.15A {Piromyces equi} SCOP: b.18.1.19 PDB: 1gwk_A* 1gwl_A* 1w90_A 1w8t_A* 1w8u_A* 1w8w_A 1w8z_A 1w9f_A 1oh3_A*
Probab=20.09 E-value=68 Score=26.81 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=30.0
Q ss_pred eeEEEeecCCcccccccccchhhhhhhccccceeEEEEEeccCCceehhhh
Q 023377 205 SMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMVI 255 (283)
Q Consensus 205 stvvtv~P~~~~~~~~~~~~~~~~~l~~n~~k~~~~vr~KrRnGRV~~~~e 255 (283)
+|+++-.|.--. +-.|.| +..||+-|.++.-.| .-|+|++++|
T Consensus 36 s~ii~~~~~~YG----AiSLK~---~~~~~rGG~i~~~~K-~EG~VKi~V~ 78 (153)
T 1gwm_A 36 AMIINPQEGKYG----AVSLKR---NSGSFRGGSLRFDMK-NEGKVKILVE 78 (153)
T ss_dssp EEEEEECTTSCC----EEEEEE---SSCCBCSSEEEEEEE-ESSCEEEEEE
T ss_pred eEEEcCCCCccc----eEEeec---cCCCccCceEEEEEe-cCcEEEEEEe
Confidence 456666654332 222333 678999999999999 8899998865
Done!