BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023378
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OQH|A Chain A, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic
pdb|3OQH|B Chain B, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic
pdb|3OQI|A Chain A, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
Complex With Ches
pdb|3OQJ|A Chain A, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
Complex With Capso
pdb|3OQJ|B Chain B, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
Complex With Capso
Length = 257
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 120 EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADI------KEEYILMAEPDHII 169
E+P FIA P G+++ + +RPW + + + + + Y++++E D +
Sbjct: 184 ELPFFIAAPDILGVEETLLAYHRPWKLGEQISRNEFAVKMRPNQGYLMVSEADERV 239
>pdb|3OQI|B Chain B, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
Complex With Ches
Length = 257
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 120 EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADI------KEEYILMAEPDHII 169
E+P FIA P G+++ + +RPW + + + + + Y++++E D +
Sbjct: 184 ELPFFIAAPDILGVEETLLAYHRPWKLGEQISRNEFAVKMRPNQGYLMVSEADERV 239
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 210 ITNIDPIGNSPVVVGRDSLKKIAPVWMNV-------SLAMKKDPETDKAFGWVLEMYAYA 262
I + D + + P G + +K I +M S ++PE + +AYA
Sbjct: 50 IADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYA 109
Query: 263 VASALNGVGNILYKDFMIQVG 283
+ L+ + + DF ++VG
Sbjct: 110 LVGKLDAINKHSFNDFKLRVG 130
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 210 ITNIDPIGNSPVVVGRDSLKKIAPVWMNV-------SLAMKKDPETDKAFGWVLEMYAYA 262
I + D + + P G + +K I +M S ++PE + +AYA
Sbjct: 46 IADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYA 105
Query: 263 VASALNGVGNILYKDFMIQVG 283
+ L+ + + DF ++VG
Sbjct: 106 LVGKLDAINKHSFNDFKLRVG 126
>pdb|3IZG|G Chain G, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|A Chain A, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|B Chain B, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|C Chain C, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|D Chain D, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|E Chain E, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|F Chain F, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|2XVR|A Chain A, Phage T7 Empty Mature Head Shell
pdb|2XVR|B Chain B, Phage T7 Empty Mature Head Shell
pdb|2XVR|C Chain C, Phage T7 Empty Mature Head Shell
pdb|2XVR|D Chain D, Phage T7 Empty Mature Head Shell
pdb|2XVR|E Chain E, Phage T7 Empty Mature Head Shell
pdb|2XVR|F Chain F, Phage T7 Empty Mature Head Shell
pdb|2XVR|G Chain G, Phage T7 Empty Mature Head Shell
Length = 345
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 152 KADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPIT 211
KA + ++ L E + K L+K+ + AA FY +P Y ++L P
Sbjct: 171 KAALTDQVALGKEIIAALTKARAALTKNYVPAADRVFYCDPDSYSAILAALMPNAANYAA 230
Query: 212 NIDP 215
IDP
Sbjct: 231 LIDP 234
>pdb|3S7T|A Chain A, Crystal Structure Of Semet B. Licheniformis Cdps Yvmc-Blic
pdb|3S7T|B Chain B, Crystal Structure Of Semet B. Licheniformis Cdps Yvmc-Blic
Length = 257
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 120 EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADI------KEEYILMAEPDHII 169
E+P FIA P G+++ + +RPW + + + + + Y+ ++E D +
Sbjct: 184 ELPFFIAAPDILGVEETLLAYHRPWKLGEQISRNEFAVKXRPNQGYLXVSEADERV 239
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 210 ITNIDPIGNSPVVVGRDSLKKIAPVWMNV-------SLAMKKDPETDKAFGWVLEMYAYA 262
I + D + + P G + +K I +M S ++PE + +AYA
Sbjct: 49 IADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYA 108
Query: 263 VASALNGVGNILYKDFMIQVG 283
+ L+ + + DF ++VG
Sbjct: 109 LVGKLDAINKHSFNDFKLRVG 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,844,575
Number of Sequences: 62578
Number of extensions: 377320
Number of successful extensions: 586
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 11
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)